Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 223 of 318
Found at i:70803807 original size:22 final size:22
Alignment explanation
Indices: 70803756--70803819 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
70803746 CCAATTATTT
*
70803756 TGATTATGGCTTTGTGCAAACC
1 TGATTATGGCTTTGTGCCAACC
*
70803778 T-ACATATGGCTTTGTGCCAACC
1 TGA-TTATGGCTTTGTGCCAACC
*
70803800 TGATTATGGCTGTGTGCCAA
1 TGATTATGGCTTTGTGCCAA
70803820 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (22 bp):
TGATTATGGCTTTGTGCCAACC
Found at i:70804008 original size:27 final size:27
Alignment explanation
Indices: 70803978--70804085 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
70803968 ATTCTGTTAA
* *
70803978 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* * *
70804005 GTGGTTATGCCACAAATATCT-ATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
70804032 GTGGCTCTGCCACAATATATGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
70804059 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
70804085 G
1 G
70804086 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 11 0.17
27 49 0.74
28 6 0.09
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:70804073 original size:54 final size:53
Alignment explanation
Indices: 70803978--70804085 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
70803968 ATTCTGTTAA
* * * * **
70803978 GTGGCTTTGCCACATTATCTGTTTCTGGTGGTTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCACAATATATGTATCTGGTGACTATGCCAC-AATATCTATTCTG
* * *
70804032 GTGGCTCTGCCACAATATATGTATCTGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATATGTATCTGGTGACTATGCCACAATATCTATTCTG
70804085 G
1 G
70804086 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATATGTATCTGGTGACTATGCCACAATATCTATTCTG
Found at i:70804240 original size:6 final size:6
Alignment explanation
Indices: 70804225--70804327 Score: 68
Period size: 6 Copynumber: 16.8 Consensus size: 6
70804215 ATTCTCTTAC
* * * *
70804225 CTGATA CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT TTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
* * * *
70804274 CTGATT CTG-TCAC CTGATT TTGATT CTGATT CTCATT TTGATT CT-AGTT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT
70804323 CTGAT
1 CTGAT
70804328 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 15, Indels: 16
0.70 0.14 0.15
Matches are distributed among these distances:
5 3 0.04
6 63 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:70804251 original size:25 final size:25
Alignment explanation
Indices: 70804213--70804267 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
70804203 ATTCTAATTT
* *
70804213 TGATTCTCTTACCTGATACTGATTC
1 TGATTCTCTCACCTAATACTGATTC
* *
70804238 TGATTCTGTCACCTAATTCTGATTC
1 TGATTCTCTCACCTAATACTGATTC
70804263 TGATT
1 TGATT
70804268 TTGATTCTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (25 bp):
TGATTCTCTCACCTAATACTGATTC
Found at i:70804266 original size:37 final size:37
Alignment explanation
Indices: 70804225--70804318 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
70804215 ATTCTCTTAC
*
70804225 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
70804262 CTGATTTTGATTCTGATTCTGTCACCTGATTTTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
70804299 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
70804319 AGTTCTGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:70810893 original size:8 final size:8
Alignment explanation
Indices: 70810880--70810949 Score: 54
Period size: 8 Copynumber: 8.2 Consensus size: 8
70810870 TTATTTTCTC
70810880 AAAAATTT
1 AAAAATTT
70810888 AAAAATTACT
1 AAAAATT--T
*
70810898 AATAATTT
1 AAAAATTT
*
70810906 AATAAATTG
1 AA-AAATTT
70810915 AAAAA-TT
1 AAAAATTT
70810922 AAATAATTT
1 AAA-AATTT
70810931 AATAAAATTT
1 -A-AAAATTT
70810941 -AAAATTT
1 AAAAATTT
70810948 AA
1 AA
70810950 GAGGTCTCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
7 11 0.22
8 16 0.32
9 8 0.16
10 13 0.26
11 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (8 bp):
AAAAATTT
Found at i:70810932 original size:25 final size:26
Alignment explanation
Indices: 70810882--70810936 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 26
70810872 ATTTTCTCAA
*
70810882 AAATTTAAAAATTACTAATAATTTAAT
1 AAATTGAAAAATTAC-AATAATTTAAT
70810909 AAATTGAAAAATTA-AATAATTTAAT
1 AAATTGAAAAATTACAATAATTTAAT
70810934 AAA
1 AAA
70810937 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 14 0.52
27 13 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
AAATTGAAAAATTACAATAATTTAAT
Found at i:70810944 original size:25 final size:26
Alignment explanation
Indices: 70810881--70810946 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
70810871 TATTTTCTCA
70810881 AAAATTTAAAAATTACTAATAATTTAAT
1 AAAATTT-AAAATTAC-AATAATTTAAT
*
70810909 -AAATTGAAAAATTA-AATAATTTAAT
1 AAAATT-TAAAATTACAATAATTTAAT
70810934 AAAATTTAAAATT
1 AAAATTTAAAATT
70810947 TAAGAGGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 17 0.50
26 5 0.15
27 12 0.35
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAATTTAAAATTACAATAATTTAAT
Found at i:70810949 original size:17 final size:18
Alignment explanation
Indices: 70810881--70810942 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
70810871 TATTTTCTCA
*
70810881 AAAATTTAA-AAATTACT
1 AAAATTTAATAAATTAAT
*
70810898 AATAATTTAATAAATTGA-
1 AA-AATTTAATAAATTAAT
* *
70810916 AAAATTAAATAATTTAAT
1 AAAATTTAATAAATTAAT
70810934 AAAATTTAA
1 AAAATTTAA
70810943 AATTTAAGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
17 14 0.39
18 17 0.47
19 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAATTTAATAAATTAAT
Found at i:70823795 original size:42 final size:42
Alignment explanation
Indices: 70823748--70823831 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
70823738 TGAGACAACG
70823748 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
1 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
70823790 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
1 GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
70823832 CTATCACCCG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.38
Consensus pattern (42 bp):
GAGATGGTTAGAATTAATTAAGGATTATGATCTGATTATTGA
Found at i:70827035 original size:27 final size:27
Alignment explanation
Indices: 70827002--70827057 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
70826992 CTAGAAACTC
70827002 AACGGGATTAATATGATGTATGTCAAT
1 AACGGGATTAATATGATGTATGTCAAT
70827029 AACGGGATTAATATGATGTATGTCAAT
1 AACGGGATTAATATGATGTATGTCAAT
70827056 AA
1 AA
70827058 TATGATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (27 bp):
AACGGGATTAATATGATGTATGTCAAT
Found at i:70835428 original size:20 final size:20
Alignment explanation
Indices: 70835400--70835449 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
70835390 AAGACTATGA
*
70835400 ACCACTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
70835420 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
**
70835440 TTCATTCCAT
1 ACCATTCCAT
70835450 GTTCTTAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:70838917 original size:29 final size:29
Alignment explanation
Indices: 70838875--70838964 Score: 162
Period size: 29 Copynumber: 3.1 Consensus size: 29
70838865 TTCCTGGATG
*
70838875 ATAGTCAATAACCAAATCATAATCTTTGA
1 ATAGTCAATAACCAAATCATAATCTTTCA
70838904 ATAGTCAATAACCAAATCATAATCTTTCA
1 ATAGTCAATAACCAAATCATAATCTTTCA
*
70838933 ATAGTCAATACCCAAATCATAATCTTTCA
1 ATAGTCAATAACCAAATCATAATCTTTCA
70838962 ATA
1 ATA
70838965 ACTCAAGCCA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.31
Consensus pattern (29 bp):
ATAGTCAATAACCAAATCATAATCTTTCA
Found at i:70846005 original size:43 final size:43
Alignment explanation
Indices: 70845938--70846049 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 43
70845928 TACCATACCA
* * **
70845938 ATGCC-ATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCAATAGCCCAGATATGATCTTACATGAAATCTCATATCG
*
70845980 ATGCCAATAGCCCAGCTATGATCTTACATGAAATCTCATATCG
1 ATGCCAATAGCCCAGATATGATCTTACATGAAATCTCATATCG
* * *
70846023 ATGCC-ATATCCTAGATATGGTCTTACA
1 ATGCCAATAGCCCAGATATGATCTTACA
70846050 CGTAATCTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 23 0.38
43 37 0.62
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (43 bp):
ATGCCAATAGCCCAGATATGATCTTACATGAAATCTCATATCG
Found at i:70848490 original size:25 final size:25
Alignment explanation
Indices: 70848444--70848491 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
70848434 CTGAGCTAAA
*
70848444 CAGGAAACTCATAAGAGTTTTTACC
1 CAGGAAACTCATAAGAGCTTTTACC
*
70848469 CAGGAAGCTCAT-AGAGCCTTTTA
1 CAGGAAACTCATAAGAG-CTTTTA
70848492 GATATCTACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
CAGGAAACTCATAAGAGCTTTTACC
Found at i:70854702 original size:3 final size:3
Alignment explanation
Indices: 70854694--70854739 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
70854684 TATATGTTAC
70854694 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
70854740 ATAGTAGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:70854772 original size:24 final size:24
Alignment explanation
Indices: 70854728--70854773 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
70854718 ATAATAATAA
* *
70854728 TAATAATAATAAATAGTAGAAACT
1 TAATAATAAGAAATAGAAGAAACT
70854752 TAATAA-AAGAAATAGAAAGAAA
1 TAATAATAAGAAATAG-AAGAAA
70854774 GTGGAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.65, C:0.02, G:0.11, T:0.22
Consensus pattern (24 bp):
TAATAATAAGAAATAGAAGAAACT
Found at i:70858238 original size:27 final size:27
Alignment explanation
Indices: 70857921--70858237 Score: 400
Period size: 27 Copynumber: 11.7 Consensus size: 27
70857911 TACTAAAATG
** *
70857921 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
70857948 CTCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
70857975 CCCTCGATTTATAGCATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
70858002 TCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
70858029 TCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
70858056 CCCTCGATTTACAGAATTACCGCTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
70858083 CCCTCGATTTACAGAATAACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
70858110 CTCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
70858137 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
70858164 CCCTCAATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
70858191 CCCTTGATTTGCAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
70858218 CCCTCAATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
70858238 TAAAATACTC
Statistics
Matches: 252, Mismatches: 38, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:70858256 original size:81 final size:81
Alignment explanation
Indices: 70857901--70858266 Score: 367
Period size: 81 Copynumber: 4.5 Consensus size: 81
70857891 AATACTTTAG
* * * ** * *
70857901 TTTACCAAATTACTAAAATGCCCTCGATTTGTAGAATTACCATTTTACTCTCGATTTATAGAATT
1 TTTACAAAATTACTAATATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATT
70857966 A-CTGTTTTACCCTCGA
66 ATC-GTTTTACCCTCGA
* ** *** * * * *
70857982 TTTATAGCATTACCGTTTTATCCTCGATTTACAGAATTACCGTTTTATCCTCGATTTACAGAATT
1 TTTACAAAATTACTAATATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATT
70858047 ATCGTTTTACCCTCGA
66 ATCGTTTTACCCTCGA
* *** * * * *
70858063 TTTACAGAATTACCGCTTTACCCTCGATTTACAGAATAACCATTTTACTCTCGATTTATAGAATT
1 TTTACAAAATTACTAATATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATT
70858128 ATCGTTTTACCCTCGA
66 ATCGTTTTACCCTCGA
* * * * * *
70858144 TTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTTGATTTGCAGAATT
1 TTTACAAAATTACTAATATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATT
*
70858209 A-CTGTTTTACCCTCAA
66 ATC-GTTTTACCCTCGA
* * * * *
70858225 TTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCA
1 TTTACAAAATTACTAATATACCCTCGATTTACAGAATTACCA
70858267 AAATACCCTC
Statistics
Matches: 238, Mismatches: 45, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
80 1 0.00
81 236 0.99
82 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
TTTACAAAATTACTAATATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATT
ATCGTTTTACCCTCGA
Found at i:70858263 original size:54 final size:54
Alignment explanation
Indices: 70858034--70858302 Score: 180
Period size: 54 Copynumber: 5.0 Consensus size: 54
70858024 TTTTATCCTC
* * * * * **** *
70858034 GATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGCTTTACCCTC
1 GATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTT
* * * * * * * **** *
70858088 GATTTACAGAATAACCATTTTACTCTCGATTTATAGAATTATCGTTTTACCCTC
1 GATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTT
* ***
70858142 GATTTACAAAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTT
1 GATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTT
* * ** * *
70858196 GATTTGCAGAATTACTGTTTTACCCTCAATTTACAAAATTACTAAAATACTCTT
1 GATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTT
* *** * *
70858250 GGTTTACAAAATTACCAAAATACCCTCAA-TCAGTAAAATTACCAAAATACCCT
1 GATTTACAAAATTACCATTTTACCCTCAATTTA-CAAAATTACCAAAATACCCT
70858303 GGTCTGTAAA
Statistics
Matches: 177, Mismatches: 37, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
53 2 0.01
54 175 0.99
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (54 bp):
GATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTT
Found at i:70858287 original size:27 final size:27
Alignment explanation
Indices: 70858216--70858436 Score: 171
Period size: 27 Copynumber: 8.2 Consensus size: 27
70858206 ATTACTGTTT
* ** *
70858216 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTCAGTTTGTAAAATTACCAAAA
* ** **
70858243 TACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAGTTTGTAAAATTACCAAAA
* **
70858270 TACCCTCAATCAGTAAAATTACCAAAA
1 TACCCTCAGTTTGTAAAATTACCAAAA
* * * *
70858297 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCAGTTTGTAAAATTACCAAAA
*
70858323 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-AGTTTGTAAAATTACCAAAA
* *
70858350 TACCACT-AGTTTGTGAAATTACCGAAA
1 TACC-CTCAGTTTGTAAAATTACCAAAA
*
70858377 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAGTTTGTAAAATTACCAAAA
* * **
70858404 TACCCTTAATTTACAAAATTA-CAGAAA
1 TACCCTCAGTTTGTAAAATTACCA-AAA
70858431 TACCCT
1 TACCCT
70858437 TGACTTTCTA
Statistics
Matches: 158, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 24 0.15
27 133 0.84
28 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCAGTTTGTAAAATTACCAAAA
Found at i:70858369 original size:80 final size:80
Alignment explanation
Indices: 70858230--70858436 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 80
70858220 CTCAATTTAC
* *
70858230 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
70858295 AATACCCTGGTCTGT
66 AATACCCTGGTCTGT
* ** * ** * *
70858310 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCACT-AGTTTGTGAAATTACCG
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACC-CTCAATCAGTAAAATTACCA
** *
70858374 AAATACCCTCAATTTGT
65 AAATACCCT-GGTCTGT
* * **
70858391 AAAATTACCAAAATACCCTTAATTTACAAAATTA-CAGAAATACCCT
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCA-AAATACCCT
70858437 TGACTTTCTA
Statistics
Matches: 104, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
80 64 0.62
81 40 0.38
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
AATACCCTGGTCTGT
Found at i:70858423 original size:54 final size:54
Alignment explanation
Indices: 70858216--70858520 Score: 231
Period size: 54 Copynumber: 5.6 Consensus size: 54
70858206 ATTACTGTTT
** * * * *
70858216 TACCCTCAATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCGAAA
** * * ** * **
70858270 TACCCTCAATCAGTAAAATTACCAAAATACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCGAAA
** ***
70858323 TACCC-CTGGTTTGTAAAATTACCAAAATACCAC-TAGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACC-CTTAGTTTACAAAATTACCGAAA
* *
70858377 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCGAAA
* * * * * *
70858431 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTAGTTTACAAAATTACTGAAA
1 TACCC-TCAATTTGT-AAAATTACCA-AAATACCCTTAGTTTACAAAATTACCGAAA
*** * * *
70858487 TACCCTTGGTTTGTAGATTTACCAAAACACCCTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT
70858521 GTAGGATGAA
Statistics
Matches: 199, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
52 1 0.01
53 42 0.21
54 103 0.52
55 14 0.07
56 39 0.20
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCGAAA
Found at i:70858498 original size:27 final size:27
Alignment explanation
Indices: 70858225--70858521 Score: 147
Period size: 27 Copynumber: 11.0 Consensus size: 27
70858215 TTACCCTCAA
* *
70858225 TTTACAAAATTACTAAAATACTCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
**
70858252 TTTACAAAATTACCAAAATACCC-TCA
1 TTTACAAAATTACCAAAATACCCTTGG
* * *
70858278 ATCAGTAAAATTACCAAAATACCC-TGG
1 TTTA-CAAAATTACCAAAATACCCTTGG
* ** * * *
70858305 TCTGTAAAATTGCTAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** *
70858332 TTTGTAAAATTACCAAAATACCAC-TAG
1 TTTACAAAATTACCAAAATACC-CTTGG
*** * ***
70858359 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACCAAAATACCCTTGG
** **
70858386 TTTGTAAAATTACCAAAATACCCTTAA
1 TTTACAAAATTACCAAAATACCCTTGG
*
70858413 TTTACAAAATTA-CAGAAATACCCTTGAC
1 TTTACAAAATTACCA-AAATACCCTTG-G
* * *
70858441 TTT-CTAAAAATTA-TAGAAATACCATTAG
1 TTTAC--AAAATTACCA-AAATACCCTTGG
**
70858469 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** * * *
70858496 TTTGTAGATTTACCAAAACACCCTTG
1 TTTACAAAATTACCAAAATACCCTTG
70858522 TAGGATGAAA
Statistics
Matches: 216, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 23 0.11
27 166 0.77
28 8 0.04
29 19 0.09
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:70858582 original size:27 final size:27
Alignment explanation
Indices: 70858538--70858612 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
70858528 GAAATGACTA
*
70858538 TAATACCCCTAATA-GGTAAAAAGACCG
1 TAATACCCCT-GTAGGGTAAAAAGACCG
**
70858565 TAA-AGCCCCTGTAGGGTAAAGTGACCG
1 TAATA-CCCCTGTAGGGTAAAAAGACCG
* *
70858592 TAATACCCTTGTATGGTAAAA
1 TAATACCCCTGTAGGGTAAAA
70858613 TGACGAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
TAATACCCCTGTAGGGTAAAAAGACCG
Found at i:70858616 original size:27 final size:27
Alignment explanation
Indices: 70858552--70858616 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
70858542 ACCCCTAATA
*
70858552 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
70858579 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
70858606 GGTAAAATGAC
1 GGTAAAATGAC
70858617 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:70859248 original size:25 final size:25
Alignment explanation
Indices: 70859219--70859266 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
70859209 TTATAATGTG
70859219 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTGTTTTGCCCCTAGGTA
70859244 AAAATGACTGTTTTGCCCCTAGG
1 AAAATGACTGTTTTGCCCCTAGG
70859267 GTTTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
AAAATGACTGTTTTGCCCCTAGGTA
Found at i:70859327 original size:20 final size:20
Alignment explanation
Indices: 70859293--70859368 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
70859283 GATACGTGGG
70859293 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
70859310 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
70859331 GCATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
*
70859351 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
70859369 GAATTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:70859329 original size:11 final size:11
Alignment explanation
Indices: 70859313--70859368 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
70859303 CATGATTGAT
70859313 ATGATATGCAC
1 ATGATATGCAC
70859324 ATGATATG--C
1 ATGATATGCAC
70859333 ATGATATGCAC
1 ATGATATGCAC
*
70859344 ATGATATG--T
1 ATGATATGCAC
*
70859353 ATGAAATGCAC
1 ATGATATGCAC
70859364 ATGAT
1 ATGAT
70859369 GAATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70859496 original size:52 final size:51
Alignment explanation
Indices: 70859418--70859539 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
70859408 GAGGAAGTGC
*
70859418 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
70859470 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
70859521 AAAAGGGCTT-TG-CCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
70859540 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
49 7 0.10
50 2 0.03
51 25 0.36
52 35 0.51
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:70859515 original size:25 final size:26
Alignment explanation
Indices: 70859418--70859539 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
70859408 GAGGAAGTGC
* **
70859418 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
70859444 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
70859470 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
70859496 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
70859521 AAAAGGGCTT-TG-CCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
70859540 ATTAAAGAGG
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 7 0.08
25 25 0.28
26 57 0.64
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:70859748 original size:42 final size:42
Alignment explanation
Indices: 70859684--70859775 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
70859674 TAGTCTCCCC
* * *
70859684 AAATAGGCTTTCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
70859726 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
70859768 AAATGGGC
1 AAATGGGC
70859776 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:70859866 original size:30 final size:31
Alignment explanation
Indices: 70859799--70859876 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
70859789 CGTTTACAAT
70859799 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
70859830 AAAGGCTTTGGCCCAGTGATTTGATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
70859860 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
70859877 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 16 0.36
31 28 0.64
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:70863637 original size:24 final size:24
Alignment explanation
Indices: 70863610--70863687 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
70863600 AAGGCTGTCA
*
70863610 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
70863634 GGAGAGGATTTAGGAGCGGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
70863658 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
70863682 GGAGAA
1 GGAGAA
70863688 CGGTGTTGGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.33, C:0.04, G:0.44, T:0.19
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:70865157 original size:27 final size:26
Alignment explanation
Indices: 70865115--70865198 Score: 114
Period size: 27 Copynumber: 3.2 Consensus size: 26
70865105 AGGAAGCATC
*
70865115 CTGGTGGCTATGCCACATTTATCTGTT
1 CTGGTGGCTCTGCCACA-TTATCTGTT
*
70865142 CTGGTGGCTCTACCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
70865169 CTGGTGACTCTGCCACATTATTTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
70865195 CTGG
1 CTGG
70865199 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 13 0.25
27 37 0.73
28 1 0.02
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:70871428 original size:24 final size:24
Alignment explanation
Indices: 70871401--70871454 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
70871391 AAGGCTGTCA
*
70871401 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
70871425 GGAGAGGATTTAGGAGTTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
70871449 GGAGAA
1 GGAGAA
70871455 CGGTGTTGGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.43, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:70887946 original size:27 final size:27
Alignment explanation
Indices: 70887881--70887957 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
70887871 AAATTACTGA
* * *
70887881 AATACCCTTGTAGTGTAAAATGATCGT
1 AATACCCTTGTAGGGTAAAATGACCAT
*
70887908 AATGCCCTTGTAGGGTAAAATGACCAT
1 AATACCCTTGTAGGGTAAAATGACCAT
* *
70887935 AATACTCC-TGTATGGTAGAATGA
1 AATAC-CCTTGTAGGGTAAAATGA
70887958 TGATTATGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 40 0.95
28 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAAAATGACCAT
Found at i:70888143 original size:22 final size:22
Alignment explanation
Indices: 70888115--70888160 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
70888105 GTAGTCATTT
*
70888115 TGTACAAGGCTTTTAGCCGTTC
1 TGTACAAGGCTTTCAGCCGTTC
*
70888137 TGTACAAGGCTTTCAGCCTTTC
1 TGTACAAGGCTTTCAGCCGTTC
70888159 TG
1 TG
70888161 CGATACTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (22 bp):
TGTACAAGGCTTTCAGCCGTTC
Found at i:70890492 original size:11 final size:11
Alignment explanation
Indices: 70890476--70890500 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70890466 ATATGATATT
70890476 TTATTATTTTA
1 TTATTATTTTA
70890487 TTATTATTTTA
1 TTATTATTTTA
70890498 TTA
1 TTA
70890501 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:70895628 original size:24 final size:24
Alignment explanation
Indices: 70895590--70895649 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
70895580 CCAACACTGT
* *
70895590 TCTCCCTAATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
70895614 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
70895638 TCTCCCTTATCA
1 TCTCCCTTATCA
70895650 ACTCACAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.22, C:0.40, G:0.03, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:70897667 original size:25 final size:25
Alignment explanation
Indices: 70897638--70897687 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
70897628 AGTCATAATC
70897638 CTTAAGCAACTCAATCCATCTCCTT
1 CTTAAGCAACTCAATCCATCTCCTT
70897663 CTTAAGCAACTCAATCCATCTCCTT
1 CTTAAGCAACTCAATCCATCTCCTT
70897688 TGCCTAAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.36, G:0.04, T:0.32
Consensus pattern (25 bp):
CTTAAGCAACTCAATCCATCTCCTT
Found at i:70901982 original size:27 final size:27
Alignment explanation
Indices: 70901926--70902036 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
70901916 AGCATGGCTG
* *
70901926 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
70901952 CCAGAATAGATAATTATGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
70901979 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
70902006 GCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
70902033 CCAG
1 CCAG
70902037 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
26 14 0.20
27 56 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:70902017 original size:54 final size:53
Alignment explanation
Indices: 70901926--70902036 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
70901916 AGCATGGCTG
* *
70901926 CCAGAACAGATAATGTGACAGAGTCACCAGAATAGATAATTATGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAATAGATAAATATGGCAGAGCCA
* * * *
70901979 CCAGAACAGATATATGTGGCAGAGCCAGCAG-ATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAAT-AGATAAATATGGCAGAGCCA
70902033 CCAG
1 CCAG
70902037 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 14 0.28
54 36 0.72
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAATAGATAAATATGGCAGAGCCA
Found at i:70903507 original size:24 final size:24
Alignment explanation
Indices: 70903469--70903545 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
70903459 CCAACACCAT
* *
70903469 TCTCCCTAATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
70903493 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
70903517 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
70903541 TCTCC
1 TCTCC
70903546 AAATAGCCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.21, C:0.42, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:70905257 original size:28 final size:28
Alignment explanation
Indices: 70905187--70905289 Score: 125
Period size: 28 Copynumber: 3.7 Consensus size: 28
70905177 CATATTCGAC
* * * *
70905187 ATCTCGCACATTAAGTGCCATTCTTAGT
1 ATCTCGCACACTAAGTGCCATACTCAAT
* * * * *
70905215 GTTTCGTACATTAAGTTCCATACTCAAT
1 ATCTCGCACACTAAGTGCCATACTCAAT
70905243 ATCTCGCACACTAAGTGCCATACTCAAT
1 ATCTCGCACACTAAGTGCCATACTCAAT
70905271 ATCTCGCACACTAAGTGCC
1 ATCTCGCACACTAAGTGCC
70905290 GTACATAGCC
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (28 bp):
ATCTCGCACACTAAGTGCCATACTCAAT
Found at i:70905339 original size:40 final size:41
Alignment explanation
Indices: 70905275--70905382 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 41
70905265 CTCAATATCT
70905275 CGCACACTAAGTGCCGTACA--TAGCCGAAGC-AATGTCGAAC
1 CGCACACTAAGTGCC--ACATTTAGCCGAAGCTAATGTCGAAC
* * *
70905315 CGCACACTAAGTGCCACATTTAGCCAAAGCTATTTTCGAAC
1 CGCACACTAAGTGCCACATTTAGCCGAAGCTAATGTCGAAC
**
70905356 TACACACTAAGTGCCACATTTAGCCGA
1 CGCACACTAAGTGCCACATTTAGCCGA
70905383 TATGTCGTCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
38 3 0.05
40 24 0.41
41 32 0.54
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (41 bp):
CGCACACTAAGTGCCACATTTAGCCGAAGCTAATGTCGAAC
Found at i:70910755 original size:14 final size:14
Alignment explanation
Indices: 70910736--70910765 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70910726 TTTTGATTAA
70910736 ATAACTGAAGGTAT
1 ATAACTGAAGGTAT
70910750 ATAACTGAAGGTAT
1 ATAACTGAAGGTAT
70910764 AT
1 AT
70910766 GTGAAACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (14 bp):
ATAACTGAAGGTAT
Found at i:70911235 original size:27 final size:27
Alignment explanation
Indices: 70911197--70911877 Score: 699
Period size: 27 Copynumber: 25.6 Consensus size: 27
70911187 TAATAAAGAG
* *
70911197 AAATTACTGAAATACCCTCGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
70911224 AAATTACCGAAATACCCTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
***
70911250 AAATTATTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911277 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
***
70911303 AAATTATTAAAATACCCTCGATTTGT-
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911329 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
*
70911355 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911382 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
***
70911408 AAATTATTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
70911435 AAATTACTAAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
***
70911461 AAATTATTAAAATACCCTCGATTTGT-
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911487 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
*
70911513 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911540 AAATTACCGAAATACCCTCTA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
70911566 AAATTACCAAAACACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
70911593 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911620 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
** *
70911646 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911673 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911699 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911726 AAATTATCGAAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911753 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70911780 AAATTTCC-AAA-ACACTTCCGATTTGTA
1 AAATTACCGAAATAC-CCT-CGATTTGTA
* * * * *
70911807 AAATTATCAAAATACCCT-TATAGTGTT
1 AAATTACCGAAATACCCTCGAT-TTGTA
* * *
70911834 AAATTACCAAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
70911861 AAATAACCGACATACCC
1 AAATTACCGAAATACCC
70911878 CTATAGGGTA
Statistics
Matches: 558, Mismatches: 79, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
25 12 0.02
26 233 0.42
27 306 0.55
28 5 0.01
29 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:70911254 original size:53 final size:53
Alignment explanation
Indices: 70911196--70911877 Score: 777
Period size: 53 Copynumber: 12.8 Consensus size: 53
70911186 ATAATAAAGA
* *
70911196 GAAATTACTGAAATACCCTCGATTTTTAAAATTACCGAAATACCCTCGATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* * *
70911249 AAAATTATTAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* *
70911302 GAAATTATTAAAATACCCTCGATTTGT-AAATTACCGAAATACCCTCAATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* *
70911354 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* **
70911407 GAAATTATTAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* *
70911460 GAAATTATTAAAATACCCTCGATTTGT-AAATTACCGAAATACCCTCAATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* *
70911512 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCTATTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
* * * *
70911565 GAAATTACCAAAACACTCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * ** *
70911619 AAAATTACCAAAATACCCTCGA-TTGTGAAATTACTAAAATACCCTCAATTTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * * *
70911672 AAAATTACTGAAATACCCTCGA-TTGTGAAATTATCGAAACACCCTCGATTTGT
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * * *
70911725 AAAATTA-TCGAAATACCCCCGATTTGTAAAATTACCAAAATACCCTCAATTTGT
1 GAAATTACT-AAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGT
* * * * * * * *
70911779 AAAATTTCCAAAACA-CTTCCGATTTGTAAAATTATCAAAATACCCT-TATAGTGT
1 GAAATTACTAAAATACCCT-CGATTTGTAAAATTACCGAAATACCCTCGAT--TGT
* * * * * *
70911833 TAAATTACCAAAATACCCTTG-TAGTGTAAAATAACCGACATACCC
1 GAAATTACTAAAATACCCTCGAT-TTGTAAAATTACCGAAATACCC
70911878 CTATAGGGTA
Statistics
Matches: 554, Mismatches: 64, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
52 97 0.18
53 337 0.61
54 118 0.21
55 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGT
Found at i:70911416 original size:158 final size:158
Alignment explanation
Indices: 70911196--70911771 Score: 886
Period size: 158 Copynumber: 3.6 Consensus size: 158
70911186 ATAATAAAGA
* *
70911196 GAAATTACTGAAATACCCTCGATTTTTAAAATTACCGAAATACCCTCGATTGTAAAATTATTAAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTATCAAA
*
70911261 ATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTGTGAAATTATTAAAATACCCTCGATT
66 ATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTATTAAAATACCCTCGATT
70911326 TGTAAATTACCGAAATACCCTCAATTGT
131 TGTAAATTACCGAAATACCCTCAATTGT
* * *
70911354 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTGTGAAATTATTAAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTATCAAA
70911419 ATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTATTAAAATACCCTCGATT
66 ATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTATTAAAATACCCTCGATT
70911484 TGTAAATTACCGAAATACCCTCAATTGT
131 TGTAAATTACCGAAATACCCTCAATTGT
* * *
70911512 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCTATTGTGAAATTACCAAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTATCAAA
* * * * **
70911577 ACACTCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGA-
66 ATACCCTCGATTTGTAAAATTACTAAAATACCCTCGA-TTGTGAAATTATTAAAATACCCTCGAT
**
70911641 TTGTGAAATTACTAAAATACCCTCAATTTGT
130 TTGT-AAATTACCGAAATACCCTCAA-TTGT
* * * * *
70911672 AAAATTACTGAAATACCCTCGA-TTGTGAAATTATCGAAACACCCTCGATTTGTAAAATTATCGA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTATCAA
* *
70911736 AATACCCCCGATTTGTAAAATTACCAAAATACCCTC
65 AATACCCTCGATTTGTAAAATTACTAAAATACCCTC
70911772 AATTTGTAAA
Statistics
Matches: 385, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
158 253 0.66
159 64 0.17
160 68 0.18
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (158 bp):
GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTAAAATTATCAAA
ATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTATTAAAATACCCTCGATT
TGTAAATTACCGAAATACCCTCAATTGT
Found at i:70912367 original size:11 final size:11
Alignment explanation
Indices: 70912351--70912376 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
70912341 ATTGCATGTA
70912351 TGATATTATTG
1 TGATATTATTG
70912362 TGATATTATTG
1 TGATATTATTG
70912373 TGAT
1 TGAT
70912377 GTAGCCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:70915578 original size:14 final size:14
Alignment explanation
Indices: 70915559--70915588 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70915549 TTTTGATTAA
70915559 ATAACTGAAGGTAT
1 ATAACTGAAGGTAT
70915573 ATAACTGAAGGTAT
1 ATAACTGAAGGTAT
70915587 AT
1 AT
70915589 GTGAAACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (14 bp):
ATAACTGAAGGTAT
Found at i:70919632 original size:28 final size:27
Alignment explanation
Indices: 70919583--70919641 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
70919573 TAACGCCCCA
*
70919583 ATTTTCAGGATTTTCAGGATTTCTGTG
1 ATTTTCAGGATTTTCAGAATTTCTGTG
70919610 ATTTTCAAGGAATTTT-AGAATTTCTGTG
1 ATTTTC-AGG-ATTTTCAGAATTTCTGTG
70919638 -TTTT
1 ATTTT
70919642 GACTATCTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 10 0.34
28 14 0.48
29 5 0.17
ACGTcount: A:0.22, C:0.08, G:0.19, T:0.51
Consensus pattern (27 bp):
ATTTTCAGGATTTTCAGAATTTCTGTG
Found at i:70931269 original size:43 final size:43
Alignment explanation
Indices: 70931221--70931345 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 43
70931211 CTAATATGTT
* ** * *
70931221 ATCATATATCGATGCCTCTGTCCCAGGCAGGGTTTTACACGAA
1 ATCATATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
* *
70931264 ATCATATAACGATGCCAATGTCCCAGACATGGTCTTACACGTA
1 ATCATATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
* * *
70931307 ATCACA-ATACAATGCCAATGTCCCAGACATGGTCTTACA
1 ATCATATA-ACGATGCCAATGTCCCAGACAGGGTCTTACA
70931346 TGTAATCACA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 71 0.99
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATCATATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
Found at i:70933101 original size:135 final size:135
Alignment explanation
Indices: 70932859--70933253 Score: 610
Period size: 135 Copynumber: 2.9 Consensus size: 135
70932849 CTCGACTGCC
* * * * *
70932859 ACTAACATTACTGGGGTGACGGGGTGGTCTACCTTTTTAGACAGGATTACTCGGCTTTTGAGCTG
1 ACTAACATTACTGAGGTGACGGGGTGGTCTGCCTCTCTAGACAGGATTACTCGGCTTTTAAGCTG
* * *
70932924 GTTCTATCTCTTTTTCAACTCTTTCTGGATAGTCCCTGAGAAAATGGTCAAGTGAACCACATCCG
66 GTTCTATCTCTTTTTCAACTCTTTCTGGACAATCCCTAAGAAAATGGTCAAGTGAACCACATCCG
70932989 GAACT
131 GAACT
* **
70932994 ACTAACATTACTGAGGTAACGGGGTGGTCTGCCTCTCTAGACAGGATTACTCGATTTTTAAGCTG
1 ACTAACATTACTGAGGTGACGGGGTGGTCTGCCTCTCTAGACAGGATTACTCGGCTTTTAAGCTG
* * *
70933059 GTGCTATCTCTTTTTCAGCCCTTTCTGGACAATCCCTAAGAAAATGGTCAAGTGAACCACATCCG
66 GTTCTATCTCTTTTTCAACTCTTTCTGGACAATCCCTAAGAAAATGGTCAAGTGAACCACATCCG
70933124 GAACT
131 GAACT
* * * *
70933129 ACTAACATTACCGAGGTGACGGGGTGGTCTGCCTCTCTAGACAGGATTACTTGGCTTTGAAGATG
1 ACTAACATTACTGAGGTGACGGGGTGGTCTGCCTCTCTAGACAGGATTACTCGGCTTTTAAGCTG
* *
70933194 GTTCTATCTCCTTTTCAACTCTTTTTGGACAATCCCTAAGAAAATGGTCAAGTGAACCAC
66 GTTCTATCTCTTTTTCAACTCTTTCTGGACAATCCCTAAGAAAATGGTCAAGTGAACCAC
70933254 TTTCAAAAGA
Statistics
Matches: 234, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
135 234 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (135 bp):
ACTAACATTACTGAGGTGACGGGGTGGTCTGCCTCTCTAGACAGGATTACTCGGCTTTTAAGCTG
GTTCTATCTCTTTTTCAACTCTTTCTGGACAATCCCTAAGAAAATGGTCAAGTGAACCACATCCG
GAACT
Found at i:70934711 original size:22 final size:21
Alignment explanation
Indices: 70934686--70934739 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
70934676 TGCAGGGCTT
*
70934686 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGTCC-AGGC
* ** *
70934708 ACACACCTATGTGGTCCTGGC
1 ACACGCCCGTGTGGTCCAGGC
70934729 ACACGCCCGTG
1 ACACGCCCGTG
70934740 CTAGAGGCTA
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.17
Consensus pattern (21 bp):
ACACGCCCGTGTGGTCCAGGC
Found at i:70937634 original size:27 final size:27
Alignment explanation
Indices: 70937519--70937635 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
70937509 GGCAAAAAGC
* * *
70937519 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
70937546 TAATTCTACCCTATAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * **
70937573 TATTTCTACCCTACATGGGTATTTTAG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
70937600 TAACTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGG
70937627 TAATTCTAC
1 TAATTCTAC
70937636 AACTTATCCA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:70944574 original size:39 final size:40
Alignment explanation
Indices: 70944476--70944736 Score: 318
Period size: 40 Copynumber: 6.6 Consensus size: 40
70944466 AATGATGTCT
* * *
70944476 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* *
70944516 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
70944556 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
70944595 GGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
70944635 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
70944674 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
70944714 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
70944737 AACGAGTAGC
Statistics
Matches: 191, Mismatches: 23, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
39 70 0.37
40 111 0.58
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:70944769 original size:79 final size:79
Alignment explanation
Indices: 70944526--70944734 Score: 366
Period size: 79 Copynumber: 2.6 Consensus size: 79
70944516 GGACTAAGAT
70944526 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
70944591 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
70944605 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
70944670 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
70944684 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
70944735 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
78 2 0.02
79 111 0.89
80 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:70950079 original size:28 final size:28
Alignment explanation
Indices: 70950016--70950197 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
70950006 ATATTAAGTC
* *
70950016 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70950043 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
70950071 CACACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70950099 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
70950127 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
70950155 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70950183 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
70950198 GTACAATTTA
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
27 22 0.15
28 125 0.85
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:70953862 original size:80 final size:79
Alignment explanation
Indices: 70953725--70954022 Score: 266
Period size: 80 Copynumber: 3.8 Consensus size: 79
70953715 TTGAATGCTG
* * * * **
70953725 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCCGGGTTAA-ATCCCGAAGGCA
*
70953787 TTTGTGCGAGATACAAA
63 TTTGTGCGAGTTACAAA
* *
70953804 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATT
* *
70953869 CGTGCGAGTTATTAAA
65 TGTGCGAGTTA-CAAA
* * * * **
70953885 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGTTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTT
*
70953949 GTGTGAGTTACTAAA
66 GTGCGAGTTAC-AAA
* * * ** * *
70953964 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-GCTATATCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GATACTAAATCCGGGTTAAATCCCGAAGG
70954023 TACGTGATTT
Statistics
Matches: 178, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
78 13 0.07
79 46 0.26
80 106 0.60
81 12 0.07
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTT
GTGCGAGTTACAAA
Found at i:70953975 original size:39 final size:40
Alignment explanation
Indices: 70953725--70953987 Score: 264
Period size: 40 Copynumber: 6.6 Consensus size: 40
70953715 TTGAATGCTG
* * * * * *
70953725 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * *
70953765 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
70953804 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
70953845 TCCGGGTTAAATCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
70953885 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
70953925 TCCGGTTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
70953964 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70953988 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 36 0.19
40 147 0.76
41 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:70960840 original size:40 final size:40
Alignment explanation
Indices: 70960803--70961018 Score: 212
Period size: 40 Copynumber: 5.5 Consensus size: 40
70960793 ATATCCGGAC
*
70960803 TAAGAT-CCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
1 TAAGATCCCGAAGGCATTCGTGCGAGATACAAA-TCCGGGT
* * *
70960843 TAAG-CCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAGATCCCGAAGGCATTCGTGCGAGATAC-AAATCCGGGT
* *
70960883 TAA-ATCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGATCCCGAAGGCATTCGTGCGAGATA-CAAATCCGGGT
* *
70960923 TAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGATCCCGAAGGCATTCGTGCGAGATA-CAAATCCGGGT
* * * * *
70960963 TATG-TCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGATCCCGAAGGCATTCGTGCGAGATAC-AAATCCGGGT
*
70961002 TATG-TCCCGAAGGCATT
1 TAAGATCCCGAAGGCATT
70961019 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 34 0.22
40 121 0.77
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGATCCCGAAGGCATTCGTGCGAGATACAAATCCGGGT
Found at i:70960893 original size:80 final size:79
Alignment explanation
Indices: 70960756--70961053 Score: 275
Period size: 80 Copynumber: 3.8 Consensus size: 79
70960746 TTGAATGCTG
* * * * **
70960756 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCCGGGTTAA-ATCCCGAAGGCA
*
70960818 TTTGTGCGAGATACAAA
63 TTTGTGCGAGTTACAAA
* *
70960835 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATT
* *
70960900 CGTGCGAGTTATTAAA
65 TGTGCGAGTTA-CAAA
* * * **
70960916 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTT
*
70960980 GTGTGAGTTACTAAA
66 GTGCGAGTTAC-AAA
* * * ** * *
70960995 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-GCTATATCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GATACTAAATCCGGGTTAAATCCCGAAGG
70961054 TACGTGATTT
Statistics
Matches: 180, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
78 14 0.08
79 46 0.26
80 107 0.59
81 12 0.07
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAATCCCGAAGGCATTT
GTGCGAGTTACAAA
Found at i:70965915 original size:40 final size:40
Alignment explanation
Indices: 70965714--70965901 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
70965704 ATTCGGATTG
*
70965714 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70965753 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
70965793 ATAACTGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70965833 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70965873 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
70965902 AGTGAGTAGC
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 126 0.91
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:70965915 original size:80 final size:80
Alignment explanation
Indices: 70965714--70965934 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 80
70965704 ATTCGGATTG
70965714 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
70965778 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * * *
70965793 ATAACTGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
70965858 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* **
70965873 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
70965935 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 28 0.22
80 98 0.78
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:70981371 original size:14 final size:14
Alignment explanation
Indices: 70981352--70981380 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70981342 ACAGATGGAT
70981352 TCGTATAATTCTTA
1 TCGTATAATTCTTA
70981366 TCGTATAATTCTTA
1 TCGTATAATTCTTA
70981380 T
1 T
70981381 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:70985609 original size:20 final size:21
Alignment explanation
Indices: 70985543--70985611 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
70985533 TCACTTCGTT
70985543 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
70985564 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
70985585 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
70985606 -CTTTTT
1 TCTTTTT
70985612 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:70989511 original size:21 final size:21
Alignment explanation
Indices: 70989481--70989569 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
70989471 CTCACAAAGA
* *
70989481 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
70989501 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
70989522 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
70989543 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
70989567 AAA
1 AAA
70989570 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:70989562 original size:24 final size:21
Alignment explanation
Indices: 70989481--70989549 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
70989471 CTCACAAAGA
* * *
70989481 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
70989501 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
70989522 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
70989543 AAAAAGA
1 AAAAAGA
70989550 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:70993730 original size:14 final size:14
Alignment explanation
Indices: 70993711--70993739 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70993701 TACAATATAT
70993711 ATAAGAATTATACG
1 ATAAGAATTATACG
70993725 ATAAGAATTATACG
1 ATAAGAATTATACG
70993739 A
1 A
70993740 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:70996530 original size:13 final size:15
Alignment explanation
Indices: 70996505--70996544 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
70996495 TATTTTATTA
70996505 AATAAATATTAAATT
1 AATAAATATTAAATT
70996520 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
70996533 AATAAATATTAA
1 AATAAATATTAA
70996545 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:71008293 original size:12 final size:12
Alignment explanation
Indices: 71008276--71008300 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71008266 CAGAGGCTAT
71008276 TAACAATATTTA
1 TAACAATATTTA
71008288 TAACAATATTTA
1 TAACAATATTTA
71008300 T
1 T
71008301 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:71021124 original size:21 final size:21
Alignment explanation
Indices: 71021094--71021182 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
71021084 CTCACAAAGA
* *
71021094 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
71021114 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
71021135 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
71021156 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
71021180 AAA
1 AAA
71021183 TCTTTTTGTC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:71021175 original size:24 final size:21
Alignment explanation
Indices: 71021094--71021162 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
71021084 CTCACAAAGA
* * *
71021094 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
71021114 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
71021135 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
71021156 AAAAAGA
1 AAAAAGA
71021163 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:71025318 original size:14 final size:14
Alignment explanation
Indices: 71025299--71025327 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
71025289 TACAATATAT
71025299 ATAAGAATTATACG
1 ATAAGAATTATACG
71025313 ATAAGAATTATACG
1 ATAAGAATTATACG
71025327 A
1 A
71025328 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:71028112 original size:13 final size:15
Alignment explanation
Indices: 71028087--71028126 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
71028077 TTATTTATTA
71028087 AATAAATATTAAATT
1 AATAAATATTAAATT
71028102 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
71028115 AATAAATATTAA
1 AATAAATATTAA
71028127 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:71052550 original size:28 final size:28
Alignment explanation
Indices: 71052519--71052576 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
71052509 CTAATTTTGT
* *
71052519 GAGTTTAATT-GTATAGTACTAAGTGTGC
1 GAGTTTAATTATTA-AGCACTAAGTGTGC
*
71052547 GAGTTTGATTATTAAGCACTAAGTGTGC
1 GAGTTTAATTATTAAGCACTAAGTGTGC
71052575 GA
1 GA
71052577 ACTTACTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.36
Consensus pattern (28 bp):
GAGTTTAATTATTAAGCACTAAGTGTGC
Found at i:71053822 original size:19 final size:19
Alignment explanation
Indices: 71053800--71053836 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
71053790 GGTATTGAAT
71053800 TGTGTTCTTAAAATTGGTA
1 TGTGTTCTTAAAATTGGTA
71053819 TGTGTTCTTAAAATTGGT
1 TGTGTTCTTAAAATTGGT
71053837 TATATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.22, T:0.49
Consensus pattern (19 bp):
TGTGTTCTTAAAATTGGTA
Found at i:71056970 original size:43 final size:42
Alignment explanation
Indices: 71056887--71057002 Score: 112
Period size: 42 Copynumber: 2.8 Consensus size: 42
71056877 AGTCCAAACT
* * * * *
71056887 CGTTGAGTGGTACGGGTTCGTGA-GGTATG-TAACATTCGAGCC
1 CGTTGAGTGGTCCGAGTTCATGATGG-ATGCAAACATCCGAG-C
*
71056929 CGTTGA-TAGGTCCGAGTTCATTATGGATGCAAACATCCGAGC
1 CGTTGAGT-GGTCCGAGTTCATGATGGATGCAAACATCCGAGC
* *
71056971 TGTTGAGTGGTCTGAGTTCATGATGGATGCAA
1 CGTTGAGTGGTCCGAGTTCATGATGGATGCAA
71057003 TTCATGTAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.02
42 48 0.79
43 12 0.20
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.29
Consensus pattern (42 bp):
CGTTGAGTGGTCCGAGTTCATGATGGATGCAAACATCCGAGC
Found at i:71058353 original size:13 final size:13
Alignment explanation
Indices: 71058335--71058372 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
71058325 AGGCCGTGTG
71058335 AAGGACACGGGCC
1 AAGGACACGGGCC
71058348 AAGGACACGGGCC
1 AAGGACACGGGCC
71058361 AAGGACACGGGC
1 AAGGACACGGGC
71058373 ATGTGCTCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.32, C:0.29, G:0.39, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:71061866 original size:40 final size:40
Alignment explanation
Indices: 71061822--71062041 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
71061812 TATTCGAATG
* *
71061822 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGGTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
71061862 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG-TGACT
* * * *
71061902 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* *
71061942 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * * * **
71061982 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
71062021 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
71062042 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
38 13 0.09
39 16 0.11
40 118 0.79
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:71061955 original size:80 final size:80
Alignment explanation
Indices: 71061822--71062041 Score: 261
Period size: 80 Copynumber: 2.8 Consensus size: 80
71061812 TATTCGAATG
* * * * *
71061822 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGGTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
71061886 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
71061902 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
71061966 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
71061982 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
71062042 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 13 0.11
79 20 0.17
80 88 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:71063494 original size:46 final size:46
Alignment explanation
Indices: 71063443--71063655 Score: 338
Period size: 46 Copynumber: 4.6 Consensus size: 46
71063433 TGCCATAATG
* * *
71063443 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
** * *
71063489 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
71063535 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
71063581 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
71063627 TCTTTCAACTATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
71063656 TTTAGAAAGC
Statistics
Matches: 158, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 4 0.03
46 154 0.97
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
Found at i:71065563 original size:9 final size:9
Alignment explanation
Indices: 71065543--71065575 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
71065533 AAAGAAAAAC
71065543 TTCTTC-TT
1 TTCTTCTTT
71065551 TTCTTCTTT
1 TTCTTCTTT
*
71065560 TTCTTCTTG
1 TTCTTCTTT
71065569 TTCTTCT
1 TTCTTCT
71065576 CACGTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 6 0.26
9 17 0.74
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (9 bp):
TTCTTCTTT
Found at i:71068430 original size:22 final size:23
Alignment explanation
Indices: 71068399--71068467 Score: 90
Period size: 22 Copynumber: 3.1 Consensus size: 23
71068389 TATGTATTAT
71068399 TAAACAGAGAGCACTAAA-GTGC
1 TAAACAGAGAGCACTAAATGTGC
*
71068421 TATACAGAGAGCAC-AAATGTGC
1 TAAACAGAGAGCACTAAATGTGC
* *
71068443 TAAACGGAGAGCACT-AATATGC
1 TAAACAGAGAGCACTAAATGTGC
71068465 TAA
1 TAA
71068468 TAATCAGAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.07
22 38 0.93
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (23 bp):
TAAACAGAGAGCACTAAATGTGC
Found at i:71069818 original size:46 final size:46
Alignment explanation
Indices: 71069753--71069980 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
71069743 TTATCTTCGA
* * * * * *
71069753 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
*
71069799 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
71069845 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
71069891 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
71069937 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
71069981 TTCAGAAAGC
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 167 0.98
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:71072796 original size:29 final size:30
Alignment explanation
Indices: 71072719--71072796 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 30
71072709 AGAATACCCT
* *
71072719 TAAAGTATTGATTTTGTTTGAGTTAGGTACC
1 TAAATTATTGATTTTG-TTAAGTTAGGTACC
* *
71072750 TAAATTATT--TTTTGGTTAATTTGGGTACC
1 TAAATTATTGATTTT-GTTAAGTTAGGTACC
71072779 TAAATT-TTGATTTTGTTA
1 TAAATTATTGATTTTGTTA
71072797 TTGAAGTTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
28 2 0.05
29 25 0.62
30 5 0.12
31 8 0.20
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (30 bp):
TAAATTATTGATTTTGTTAAGTTAGGTACC
Found at i:71072908 original size:19 final size:21
Alignment explanation
Indices: 71072886--71072925 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
71072876 TTAAAATTTT
71072886 TTATATTAA-A-TAAAAATAA
1 TTATATTAATATTAAAAATAA
71072905 TTATATTAATATTAAAAATAA
1 TTATATTAATATTAAAAATAA
71072926 AAAATACCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 1 0.05
21 9 0.47
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TTATATTAATATTAAAAATAA
Found at i:71073410 original size:10 final size:9
Alignment explanation
Indices: 71073390--71073416 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
71073380 CGAATTAACC
71073390 AAAAAACAA
1 AAAAAACAA
71073399 AAAAAACAA
1 AAAAAACAA
71073408 AAAAAACAA
1 AAAAAACAA
71073417 TTTTGGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:71074295 original size:13 final size:13
Alignment explanation
Indices: 71074277--71074302 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71074267 CTTATCATGG
71074277 TGGATTCAGGTAA
1 TGGATTCAGGTAA
71074290 TGGATTCAGGTAA
1 TGGATTCAGGTAA
71074303 AAGAGTCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
TGGATTCAGGTAA
Found at i:71085317 original size:21 final size:21
Alignment explanation
Indices: 71085255--71085322 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
71085245 GAGCTGAACA
*
71085255 GAAACCCATAAGGGTTAAACT
1 GAAACCCAAAAGGGTTAAACT
* * ** * *
71085276 GAAGCTCAAAATAGCTGAACT
1 GAAACCCAAAAGGGTTAAACT
*
71085297 GAAACCCAGAAGGGTTAAACT
1 GAAACCCAAAAGGGTTAAACT
*
71085318 AAAAC
1 GAAAC
71085323 TCATATGAGT
Statistics
Matches: 32, Mismatches: 15, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.16
Consensus pattern (21 bp):
GAAACCCAAAAGGGTTAAACT
Found at i:71085317 original size:42 final size:42
Alignment explanation
Indices: 71085222--71085317 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
71085212 GGAAACCTGT
** * *
71085222 AAGGGTTAAAGGGAAGCTCATAAGAGCTGAACAGAAACCCAT
1 AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACAGAAACCCAG
* *
71085264 AAGGGTTAAACTGAAGCTCAAAATAGCTGAACTGAAACCCAG
1 AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACAGAAACCCAG
71085306 AAGGGTTAAACT
1 AAGGGTTAAACT
71085318 AAAACTCATA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
AAGGGTTAAACTGAAGCTCAAAAGAGCTGAACAGAAACCCAG
Found at i:71087018 original size:18 final size:18
Alignment explanation
Indices: 71086990--71087032 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
71086980 AATCATCATT
* *
71086990 AAAAAGTTATTTACTTTC
1 AAAATGTTATTAACTTTC
* *
71087008 AGAATGTTATTAATTTTC
1 AAAATGTTATTAACTTTC
71087026 AAAATGT
1 AAAATGT
71087033 CACTTATTGC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (18 bp):
AAAATGTTATTAACTTTC
Found at i:71088001 original size:18 final size:19
Alignment explanation
Indices: 71087978--71088019 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 19
71087968 CAAATAATTT
71087978 GCCCATGTGGGCCCACAC-
1 GCCCATGTGGGCCCACACG
71087996 GCCCATGTGGGCCCACACG
1 GCCCATGTGGGCCCACACG
71088015 GCCCA
1 GCCCA
71088020 AAATGGCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.17, C:0.45, G:0.29, T:0.10
Consensus pattern (19 bp):
GCCCATGTGGGCCCACACG
Found at i:71089913 original size:80 final size:80
Alignment explanation
Indices: 71089780--71090035 Score: 367
Period size: 80 Copynumber: 3.2 Consensus size: 80
71089770 GATGATAACG
* * *
71089780 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGTCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
71089845 CGAGTTACTA-ATTCC
66 CGAGTTACTATA-TCC
*
71089860 GGGCTAAGTCCCGAAGGTATTTGTGCCAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
71089925 CGAGTTACTATATCC
66 CGAGTTACTATATCC
* ** *
71089940 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
71090004 GCGAG-TAGCTATATCC
65 GCGAGTTA-CTATATCC
* *
71090020 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
71090036 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
79 18 0.11
80 143 0.88
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:71090021 original size:40 final size:40
Alignment explanation
Indices: 71089780--71090009 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
71089770 GATGATAACG
* *
71089780 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
71089820 GGGCTAAGTCCCGAAGTCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
71089860 GGGCTAAGTCCCGAAGGTATTTGTGCCAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
71089900 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
71089940 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
71089980 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
71090010 AGCTATATCC
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 174 0.99
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:71097489 original size:40 final size:40
Alignment explanation
Indices: 71097423--71097586 Score: 226
Period size: 40 Copynumber: 4.1 Consensus size: 40
71097413 GACTAAGATT
* * * *
71097423 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
* *
71097463 CGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACC
*
71097503 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
71097543 CGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA-ATCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CC
71097582 CGAAG
1 CGAAG
71097587 ATGCTTGGGT
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 93 0.84
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
Found at i:71105642 original size:40 final size:40
Alignment explanation
Indices: 71105568--71105739 Score: 190
Period size: 40 Copynumber: 4.3 Consensus size: 40
71105558 GATAACCGAA
* * *
71105568 CTAAGATCCGAAGGCATTCGTGCGA-CTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGC-TGTTATATCCGGG
* * * *
71105608 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGCTG-TTATATCCGGG
* * *
71105648 CTAAGACCCAAAGGCATTTGTGCGAGCTGCTATATCTGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGCTGTTATATCCGGG
*
71105688 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGCTGTTATATCCGGG
71105727 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
71105740 TTGCTTGGGT
Statistics
Matches: 110, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 92 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGCTGTTATATCCGGG
Found at i:71105701 original size:80 final size:79
Alignment explanation
Indices: 71105568--71105730 Score: 213
Period size: 80 Copynumber: 2.1 Consensus size: 79
71105558 GATAACCGAA
* * * * *
71105568 CTAAGATCCGAAGGCATTCGTGCGACTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCAAAGGCATTCGTGCGACTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
71105633 G-TGATTATATCCGGG
66 GTTG-TTATATCC-GG
* * *
71105648 CTAAGACCCAAAGGCATTTGTGCGAGC-TGCTATATCTGGGCTAAGACCCGAAGGCATTTGTGCG
1 CTAAGACCCAAAGGCATTCGTGCGA-CTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCG
71105712 AGTTGTTATATCCGG
65 AGTTGTTATATCCGG
71105727 CTAA
1 CTAA
71105731 ATCCCGAAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 6 0.08
80 64 0.88
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (79 bp):
CTAAGACCCAAAGGCATTCGTGCGACTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
GTTGTTATATCCGG
Found at i:71116225 original size:2 final size:2
Alignment explanation
Indices: 71116220--71116271 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
71116210 TATATATATA
71116220 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
71116262 TG TG TG TG TG
1 TG TG TG TG TG
71116272 ACATTGAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:71117391 original size:49 final size:49
Alignment explanation
Indices: 71117319--71117415 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
71117309 CTTACATAGT
71117319 TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAACG
1 TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAACG
*
71117368 TACCTCAAAATAGAATAAATGGTAGGTTAAGTACCATGTTATACGAAC
1 TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAAC
71117416 TTACTAAGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.27
Consensus pattern (49 bp):
TACCTCAAAATAGAATAAATGGTAAGTTAAGTACCATGTTATACGAACG
Found at i:71120546 original size:39 final size:41
Alignment explanation
Indices: 71120451--71120632 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
71120441 TTGAATGCTG
*
71120451 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
71120490 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
71120530 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
71120569 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
71120609 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71120633 CGAACGAGGA
Statistics
Matches: 124, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.44
40 59 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:71120586 original size:79 final size:81
Alignment explanation
Indices: 71120451--71120632 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
71120441 TTGAATGCTG
71120451 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
71120514 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
71120529 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
71120590 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
71120609 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71120633 CGAACGAGGA
Statistics
Matches: 90, Mismatches: 6, Indels: 13
0.83 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.64
80 21 0.23
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:71120656 original size:79 final size:79
Alignment explanation
Indices: 71120503--71120667 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
71120493 GGACTAAGAT
* * ** *
71120503 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTCGAACGAGTGACTAA
*
71120568 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
71120582 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTCGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTCGAACGAGTGA-
* *
71120644 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
71120661 CCGAAGG
1 CCGAAGG
71120668 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.63
80 24 0.33
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTCGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:71128460 original size:39 final size:41
Alignment explanation
Indices: 71128365--71128548 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
71128355 TTGAATGATG
*
71128365 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
71128404 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
71128444 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
71128483 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
71128523 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71128549 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:71128500 original size:79 final size:81
Alignment explanation
Indices: 71128365--71128548 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
71128355 TTGAATGATG
71128365 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
71128428 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
71128443 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
71128504 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
71128523 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71128549 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:71128570 original size:79 final size:79
Alignment explanation
Indices: 71128417--71128581 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
71128407 GGACTAAGAT
* ** *
71128417 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
71128482 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
71128496 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
71128558 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
71128575 CCGAAGG
1 CCGAAGG
71128582 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:71129892 original size:1 final size:1
Alignment explanation
Indices: 71129886--71130048 Score: 326
Period size: 1 Copynumber: 163.0 Consensus size: 1
71129876 GTTTTCGGTG
71129886 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
71129951 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
71130016 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
71130049 CTCCCGGGTC
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 162 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:71136557 original size:15 final size:15
Alignment explanation
Indices: 71136529--71136560 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
71136519 AATGTATATT
71136529 AAGTCAAACTAAAAA
1 AAGTCAAACTAAAAA
71136544 AAGT-AAACTAAAAA
1 AAGTCAAACTAAAAA
71136558 AAG
1 AAG
71136561 ATGACAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.12
Consensus pattern (15 bp):
AAGTCAAACTAAAAA
Found at i:71144914 original size:24 final size:26
Alignment explanation
Indices: 71144887--71144942 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 26
71144877 TAAAATCCTC
71144887 TTTAAAGTTAGTG-CTAAA-ATTA-AA
1 TTTAAAGTTA-TGACTAAATATTACAA
*
71144911 TTTATAGTTATGACTAAATATTACCAA
1 TTTAAAGTTATGACTAAATATTA-CAA
71144938 TTTAA
1 TTTAA
71144943 TTAGTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 2 0.08
24 14 0.54
25 4 0.15
27 6 0.23
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (26 bp):
TTTAAAGTTATGACTAAATATTACAA
Found at i:71156845 original size:40 final size:40
Alignment explanation
Indices: 71156808--71156972 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
71156798 GGACTATGAT
* * *
71156808 CCGAAGGCATTCGTG-TGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCT-AGTTGCTATATCCGGGCTAAGAC
* * *
71156848 CTGAAGGCATTTATGCTAG-TGATAATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAGTTGCT-ATATCCGGGCTAAGAC
* *
71156888 CCAAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGAC
* *
71156928 CCGAAGGCATTTGTGCTAGTTGTTATAT-CTGGCTAA-ATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGA-C
71156967 CCGAAG
1 CCGAAG
71156973 ATGCTTGGGT
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 17 0.16
40 84 0.79
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGAC
Found at i:71159207 original size:27 final size:27
Alignment explanation
Indices: 71159061--71159210 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
71159051 AGTACACTAT
* **
71159061 AAAGGCTATTCTTGCAG-GATTTTCCAC
1 AAAGGCTATTCTTTCAGAG-TTCGCCAC
* * * * *
71159088 TAAGGCTATCCCTTCATAATTCGCCAC
1 AAAGGCTATTCTTTCAGAGTTCGCCAC
* * *
71159115 TAATGCTATTCTCTCAGAGTTCGCCAC
1 AAAGGCTATTCTTTCAGAGTTCGCCAC
71159142 AAAGGCTATTCTTTCAGAGTTCGCCAC
1 AAAGGCTATTCTTTCAGAGTTCGCCAC
*
71159169 AAAGGCTATTCTTTCAGAGTTCGCCAT
1 AAAGGCTATTCTTTCAGAGTTCGCCAC
*
71159196 AAGGGCTATTCTTTC
1 AAAGGCTATTCTTTC
71159211 CTGACACATT
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.33
Consensus pattern (27 bp):
AAAGGCTATTCTTTCAGAGTTCGCCAC
Found at i:71162158 original size:46 final size:46
Alignment explanation
Indices: 71162107--71162276 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
71162097 GGCATCTGAA
*
71162107 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAG
* * * * * *
71162153 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAC---GC--CCGAG
* * *
71162200 CTTGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAATGCCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAG
*
71162246 CTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGG
71162277 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 4 0.04
46 56 0.57
47 25 0.25
48 4 0.04
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAG
Found at i:71162256 original size:93 final size:93
Alignment explanation
Indices: 71162097--71162269 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
71162087 TGGATATTTG
* * *
71162097 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
*
71162162 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
* *
71162190 GGCATCCGAACTTGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
71162255 TTGAGTCCAAGTTCG
66 TTGAGTCCAAGTTCG
71162270 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:71172319 original size:22 final size:22
Alignment explanation
Indices: 71172293--71172342 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
71172283 TGTACTTTTG
*
71172293 GGGCTAGATCCGGAAAGCTATT
1 GGGCTAGATCCGAAAAGCTATT
*
71172315 GGGCTTTGATCCGAAAAGCTATT
1 GGGC-TAGATCCGAAAAGCTATT
71172338 GGGCT
1 GGGCT
71172343 TTGTGGTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (22 bp):
GGGCTAGATCCGAAAAGCTATT
Found at i:71172325 original size:23 final size:23
Alignment explanation
Indices: 71172299--71172345 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
71172289 TTTGGGGCTA
*
71172299 GATCCGGAAAGCTATTGGGCTTT
1 GATCCGAAAAGCTATTGGGCTTT
71172322 GATCCGAAAAGCTATTGGGCTTT
1 GATCCGAAAAGCTATTGGGCTTT
71172345 G
1 G
71172346 TGGTCAGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (23 bp):
GATCCGAAAAGCTATTGGGCTTT
Found at i:71176216 original size:43 final size:45
Alignment explanation
Indices: 71176146--71176232 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 45
71176136 GCCTCACCTC
* * **
71176146 TCTGAGGTAGTAAGAGAGCAGTTTGAAGAATG-AG-TCTTATCTT
1 TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGATCTTATCTT
* *
71176189 TCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATCTTATCT
1 TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGATCTTATCT
71176233 CCCTGAAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 26 0.72
44 2 0.06
45 8 0.22
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.30
Consensus pattern (45 bp):
TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGATCTTATCTT
Found at i:71176350 original size:176 final size:177
Alignment explanation
Indices: 71176036--71176360 Score: 526
Period size: 176 Copynumber: 1.8 Consensus size: 177
71176026 GCGATATTGG
* *
71176036 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCGGATCGAATATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAAATGGTGAATCTTATC
* * * *
71176101 TCCATGTATCGGCAATGGAGCAGATTTTACCACCCGCCTCACCTCTCTGAGGTAGTAAGAGAGCA
66 TCCATGTATCGGCAAGGGAGCAGATTTTACCACCAGCCTCACCTCTCTGAGGTAGCAAGAGAACA
*
71176166 GTTTGAAGAATGAG-TCTTATCTTTCTGAGGTAGCAAGAAAGTAGAC
131 GATTGAAGAATGAGATCTTATCTTTCTGAGGTAGCAAGAAAGTAGAC
* *
71176212 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATT
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAAATGGTGAATCTTATC
* * *
71176277 TCCATGTATCGGCAAGGGAGCAGATTTTACCACCAGCCTTATCTCTCTGAGGTGGCAAGAGAACA
66 TCCATGTATCGGCAAGGGAGCAGATTTTACCACCAGCCTCACCTCTCTGAGGTAGCAAGAGAACA
*
71176342 GATTGAAGAGTGAGATCTT
131 GATTGAAGAATGAGATCTT
71176361 CTTGAGATAA
Statistics
Matches: 135, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
176 131 0.97
177 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (177 bp):
TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATCGAAAATGGTGAATCTTATC
TCCATGTATCGGCAAGGGAGCAGATTTTACCACCAGCCTCACCTCTCTGAGGTAGCAAGAGAACA
GATTGAAGAATGAGATCTTATCTTTCTGAGGTAGCAAGAAAGTAGAC
Done.