Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 226 of 318
Found at i:71744295 original size:78 final size:75
Alignment explanation
Indices: 71744127--71744306 Score: 197
Period size: 78 Copynumber: 2.3 Consensus size: 75
71744117 AAGCTCCAAT
* *
71744127 TGCCTTCGGGTCTTAACCCGGATATATCAATCGCACAATGCCTTCGGGTCTTAGCCCGGATATAT
1 TGCCTTC-GGTCTT-ACCCGGATATATCAATCGCACAATGCCTTC-GCTCTTAGCCCAGATATAT
*
71744192 CAACTTGCACAAT
63 CAACTTGCACAAA
71744205 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTTC-CTCTTAGCCCAGATAT
1 TGCCTTC-GGTCTTA-CCCGGATATATCAA-TCGCAC-AATGCC-TTCGCTCTTAGCCCAGATAT
71744269 ATCCAA-TTCGCCACAAA
61 AT-CAACTT-G-CACAAA
*
71744286 TG-CTT-GGTCTTATCCGGATAT
1 TGCCTTCGGTCTTACCCGGATAT
71744307 CATCGATCAA
Statistics
Matches: 91, Mismatches: 4, Indels: 15
0.83 0.04 0.14
Matches are distributed among these distances:
77 9 0.10
78 35 0.38
79 24 0.26
80 13 0.14
81 10 0.11
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (75 bp):
TGCCTTCGGTCTTACCCGGATATATCAATCGCACAATGCCTTCGCTCTTAGCCCAGATATATCAA
CTTGCACAAA
Found at i:71744408 original size:29 final size:29
Alignment explanation
Indices: 71744369--71744447 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
71744359 CTTAATAATC
*
71744369 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
71744399 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
71744428 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
71744448 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:71744530 original size:43 final size:42
Alignment explanation
Indices: 71744429--71744558 Score: 215
Period size: 43 Copynumber: 3.0 Consensus size: 42
71744419 TGCATTTCAA
* *
71744429 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTTT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTATT
71744471 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACT-ATT
*
71744514 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACAC-TATT
71744557 GC
1 GC
71744559 TGAAAACCAA
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
42 38 0.46
43 44 0.53
44 1 0.01
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (42 bp):
GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTATT
Found at i:71746446 original size:37 final size:37
Alignment explanation
Indices: 71746386--71746461 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
71746376 TATTACGAAA
* * *
71746386 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
71746423 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
71746460 TC
1 TC
71746462 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:71746660 original size:47 final size:47
Alignment explanation
Indices: 71746582--71746979 Score: 583
Period size: 47 Copynumber: 8.6 Consensus size: 47
71746572 CCCTTCGGGA
* * * * * **
71746582 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
71746629 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
71746676 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
71746723 CTTATCAC-CATATACACTTTCACATTCATCACATCGG-CATT-AGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
71746767 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
71746812 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
71746861 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATT-AGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
71746907 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
71746954 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
71746980 ATGGGTTTAA
Statistics
Matches: 323, Mismatches: 21, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
43 28 0.09
44 15 0.05
45 15 0.05
46 72 0.22
47 150 0.46
49 43 0.13
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:71746894 original size:185 final size:185
Alignment explanation
Indices: 71746582--71746979 Score: 604
Period size: 185 Copynumber: 2.1 Consensus size: 185
71746572 CCCTTCGGGA
* * ** *
71746582 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACA--TATACACTTTCACATCCATCACATCGGCCACTAAGCCCTATCACATATATACAC
*
71746647 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
71746712 GGCCATTAAGCCTTATCAC-CATATACACTTTCACATTCATCACATCGGC-ATTA-GC
129 GGCCATT-AGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
71746767 CTTATCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACAC
1 CTTATCACATATACACTTTCACATCCATCACATCGGCCACTAAGCCCTATCAC--ATATATACAC
* *
71746832 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
*
71746897 GGCCATTAGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 GGCCATTAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
71746954 CTTATCACATATATACACTTTCACAT
1 CTTATCAC--ATATACACTTTCACAT
71746980 ATGGGTTTAA
Statistics
Matches: 194, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
183 36 0.19
184 11 0.06
185 117 0.60
186 4 0.02
187 10 0.05
189 16 0.08
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (185 bp):
CTTATCACATATACACTTTCACATCCATCACATCGGCCACTAAGCCCTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATCGG
CCATTAGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:71746944 original size:93 final size:94
Alignment explanation
Indices: 71746582--71746979 Score: 601
Period size: 93 Copynumber: 4.3 Consensus size: 94
71746572 CCCTTCGGGA
** * * * * ** * *
71746582 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
* *
71746647 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCTATTAGGC
* *
71746676 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC-CATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
71746740 TTTCACATTCATCACATCGGC-ATTA-GC
66 TTTCACATTCATCACATCGGCTATTAGGC
71746767 CTTAT--CACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATAC
71746830 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCTATTAGGC
71746861 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATT-AGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
71746925 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
*
71746954 CTTATCACATATATACACTTTCACAT
1 CTTATCACACATATACACTTTCACAT
71746980 ATGGGTTTAA
Statistics
Matches: 282, Mismatches: 15, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
89 47 0.17
91 7 0.02
92 33 0.12
93 97 0.34
94 51 0.18
95 11 0.04
96 36 0.13
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGC
Found at i:71748649 original size:39 final size:39
Alignment explanation
Indices: 71748595--71748672 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
71748585 CTCTCCCTAA
*
71748595 ATCCAAATTCGGCATATTGAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
*
71748634 ATCCAAGTTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
71748673 CAACGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.23
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:71750745 original size:40 final size:40
Alignment explanation
Indices: 71750701--71750804 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
71750691 GAATACATGT
* * *
71750701 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
71750741 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
*
71750781 CACTAGCACGAATGCTCTTCGGAA
1 CACCAGCACGAATGCTCTTCGGAA
71750805 TTTAGCCCAG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:71750841 original size:40 final size:40
Alignment explanation
Indices: 71750806--71750978 Score: 192
Period size: 40 Copynumber: 4.3 Consensus size: 40
71750796 TCTTCGGAAT
*
71750806 TTAGCCCAGATTTAGT-AACTCGCACCAATGCCTTCGGGTC
1 TTAGCCCAGATATA-TCAACTCGCACCAATGCCTTCGGGTC
* *
71750846 TTAGCCCGGATATATCAACTTGCA-CAATTGCCTTCGGGTC
1 TTAGCCCAGATATATCAACTCGCACCAA-TGCCTTCGGGTC
* * *
71750886 TTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTC
1 TTAGCCCAGATATATCAACTCGCACCAATGCCTTCGGGTC
* * *
71750926 TTAGCCCAGATATAATC-ACTAGC-TCAATTGCCTTCGGGAC
1 TTAGCCCAGATAT-ATCAACTCGCACCAA-TGCCTTCGGGTC
*
71750966 TTAGCCCGGATAT
1 TTAGCCCAGATAT
71750979 CATTCAAATG
Statistics
Matches: 115, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
39 6 0.05
40 104 0.90
41 5 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TTAGCCCAGATATATCAACTCGCACCAATGCCTTCGGGTC
Found at i:71750849 original size:80 final size:80
Alignment explanation
Indices: 71750746--71750978 Score: 217
Period size: 80 Copynumber: 2.9 Consensus size: 80
71750736 TATAACACCA
* ** * *
71750746 GCACGAATGCTCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAA-TGCTCTTCGGAAT-TT
1 GCACAAATGC-CTTCGGGTCTTAGCCCGGATACATCAACTAGCAC-AATTGC-CTTCGG-ATCTT
*
71750808 AGCCCAGATTTAGT-AACTC
62 AGCCCAGATATA-TCAACTC
* * * *
71750827 GCACCAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATACATCAACTAGCACAATTGCCTTCGGATCTTAGCC
* *
71750892 CGGATATATCAATTC
66 CAGATATATCAACTC
* * *
71750907 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAATC-ACTAGCTCAATTGCCTTCGGGA-CTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-CATCAACTAGCACAATTGCCTTC-GGATCTTAG
*
71750970 CCCGGATAT
64 CCCAGATAT
71750979 CATTCAAATG
Statistics
Matches: 129, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
79 2 0.02
80 103 0.80
81 24 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATACATCAACTAGCACAATTGCCTTCGGATCTTAGCC
CAGATATATCAACTC
Found at i:71751305 original size:29 final size:29
Alignment explanation
Indices: 71751266--71751344 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
71751256 CTTAATAATC
*
71751266 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
71751296 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
71751325 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
71751345 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:71751427 original size:43 final size:43
Alignment explanation
Indices: 71751326--71751470 Score: 256
Period size: 43 Copynumber: 3.4 Consensus size: 43
71751316 TGCATTTCAA
71751326 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTT-TT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
71751368 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
71751411 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACGCTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
71751454 ACTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
71751471 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
42 40 0.40
43 59 0.60
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:71753385 original size:37 final size:37
Alignment explanation
Indices: 71753325--71753400 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
71753315 TATTACGAAA
* * *
71753325 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
71753362 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
71753399 TC
1 TC
71753401 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:71753599 original size:47 final size:47
Alignment explanation
Indices: 71753521--71753830 Score: 467
Period size: 47 Copynumber: 6.6 Consensus size: 47
71753511 CCCTTCGGGA
* * * * * *
71753521 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71753568 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
71753615 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71753662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71753711 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71753758 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71753805 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
71753831 ATGGGTTTAA
Statistics
Matches: 240, Mismatches: 21, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
47 197 0.82
49 43 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71753732 original size:143 final size:143
Alignment explanation
Indices: 71753521--71753830 Score: 466
Period size: 143 Copynumber: 2.2 Consensus size: 143
71753511 CCCTTCGGGA
* * * * *
71753521 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATAC
*
71753584 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
71753649 TCGGCCATTAAGC
131 TCGGCCATTAAGC
* * * *
71753662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATAC
* *
71753727 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
* *
71753792 TCGGCTATTAGGC
131 TCGGCCATTAAGC
71753805 CTTATCAC--ATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
71753831 ATGGGTTTAA
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
141 28 0.18
142 1 0.01
143 124 0.81
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACACATATAC
ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
TCGGCCATTAAGC
Found at i:71755500 original size:39 final size:39
Alignment explanation
Indices: 71755446--71755523 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
71755436 CTCTCCCTAA
*
71755446 ATCCAAATTCGGCATATTGAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
*
71755485 ATCCAAGTTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
71755524 CAACGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.23
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:71770142 original size:21 final size:21
Alignment explanation
Indices: 71770093--71770143 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
71770083 TCCAACACTC
* *
71770093 ATAATTTATCTAACCCAATAT
1 ATAATTTATATAACCCAAAAT
* * *
71770114 TTATTTTATATTACCCAAAAT
1 ATAATTTATATAACCCAAAAT
71770135 ATAATTTAT
1 ATAATTTAT
71770144 TTAATCAATT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAATTTATATAACCCAAAAT
Found at i:71770330 original size:26 final size:26
Alignment explanation
Indices: 71770271--71770330 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
71770261 TTTAATTTCC
*
71770271 TTATTTAGCATATCCAAAATGACTAA
1 TTATTTATCATATCCAAAATGACTAA
71770297 TTATTTATCATATCCAAAATGACTAA
1 TTATTTATCATATCCAAAATGACTAA
71770323 TTATTTAT
1 TTATTTAT
71770331 TTCCACATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.40, C:0.13, G:0.05, T:0.42
Consensus pattern (26 bp):
TTATTTATCATATCCAAAATGACTAA
Found at i:71772330 original size:54 final size:54
Alignment explanation
Indices: 71772242--71772351 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
71772232 CAAAAAGTTT
*
71772242 AACAATTTTGCAAATTGGTACATGGGCTAACTTAATCAAGCTCTCATGACCTCA
1 AACAATTTTGCAAATTGGTACATGAGCTAACTTAATCAAGCTCTCATGACCTCA
* *
71772296 AACAATTTTTCAAATTGGTACATGAGCTAGCTTAATCAAGCTCTCATGACCTCA
1 AACAATTTTGCAAATTGGTACATGAGCTAACTTAATCAAGCTCTCATGACCTCA
71772350 AA
1 AA
71772352 AACATAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (54 bp):
AACAATTTTGCAAATTGGTACATGAGCTAACTTAATCAAGCTCTCATGACCTCA
Found at i:71772532 original size:10 final size:10
Alignment explanation
Indices: 71772517--71772557 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
71772507 ACTTGGATTG
71772517 AACCTTAATT
1 AACCTTAATT
71772527 AACCTTAATT
1 AACCTTAATT
71772537 AA--TTAATT
1 AACCTTAATT
*
71772545 AAACCTTATTT
1 -AACCTTAATT
71772556 AA
1 AA
71772558 TTAAAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 14 0.52
11 5 0.19
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (10 bp):
AACCTTAATT
Found at i:71772551 original size:19 final size:18
Alignment explanation
Indices: 71772521--71772561 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
71772511 GGATTGAACC
71772521 TTAATTAACCTTAATTAA
1 TTAATTAACCTTAATTAA
*
71772539 TTAATTAAACCTTATTTAA
1 TTAATT-AACCTTAATTAA
71772558 TTAA
1 TTAA
71772562 AATTTAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAATTAACCTTAATTAA
Found at i:71778070 original size:20 final size:19
Alignment explanation
Indices: 71778019--71778070 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
71778009 TTATTAAAAT
71778019 AAAAAA-TTTAAAATTATG
1 AAAAAATTTTAAAATTATG
***
71778037 AAAAAATAAAAAAATTTATG
1 AAAAAATTTTAAAA-TTATG
*
71778057 AAAATATTTTAAAA
1 AAAAAATTTTAAAA
71778071 AATAGAAAGT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 6 0.24
19 4 0.16
20 15 0.60
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAAATTTTAAAATTATG
Found at i:71778464 original size:5 final size:5
Alignment explanation
Indices: 71778454--71778478 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
71778444 TGTGTTCTTC
71778454 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
71778479 CACATTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:71778817 original size:39 final size:36
Alignment explanation
Indices: 71778767--71778897 Score: 104
Period size: 39 Copynumber: 3.4 Consensus size: 36
71778757 GTTTTATATT
*
71778767 TTTTATGATTTTTATAACATTTTATAGTATTTTTTAAAA
1 TTTTATAATTTTT-TAA-ATTTTATA-TATTTTTTAAAA
* * *
71778806 TTTTATTATTTTTTAAATAATTTTCTATATTTTTAAAAA
1 TTTTATAATTTTTT--A-AATTTTATATATTTTTTAAAA
*
71778845 TTTTA-AATTTTTTTAAA-TTTATATAATTTTTTTATAA
1 TTTTATAA-TTTTTTAAATTTTATAT-A-TTTTTTAAAA
*
71778882 TTTAAATAATTTTTTA
1 TTT-TATAATTTTTTA
71778898 TTTTTAATAG
Statistics
Matches: 76, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
35 6 0.08
36 3 0.04
37 12 0.16
38 10 0.13
39 36 0.47
40 8 0.11
41 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (36 bp):
TTTTATAATTTTTTAAATTTTATATATTTTTTAAAA
Found at i:71778857 original size:19 final size:19
Alignment explanation
Indices: 71778796--71778878 Score: 66
Period size: 19 Copynumber: 4.4 Consensus size: 19
71778786 TTTTATAGTA
*
71778796 TTTTTT-AAAATTTT-ATT
1 TTTTTTAAAAATTTTAAAT
**
71778813 ATTTTTTAAATAATTTTCTAT
1 -TTTTTTAAA-AATTTTAAAT
*
71778834 ATTTTTAAAAATTTTAAAT
1 TTTTTTAAAAATTTTAAAT
71778853 TTTTTT--AAATTTATATAAT
1 TTTTTTAAAAATTT-TA-AAT
71778872 TTTTTTA
1 TTTTTTA
71778879 TAATTTAAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
17 6 0.11
18 8 0.15
19 24 0.45
20 14 0.26
21 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTTTAAAAATTTTAAAT
Found at i:71778883 original size:20 final size:19
Alignment explanation
Indices: 71778752--71778896 Score: 91
Period size: 20 Copynumber: 7.5 Consensus size: 19
71778742 ACTATATTTC
* *
71778752 TAATTGTTTTATATTTTTTA
1 TAATTTTTTTATA-ATTTTA
* *
71778772 TGATTTTTATA-ACATTTTA
1 TAATTTTTTTATA-ATTTTA
* *
71778791 TAGTATTTTTTAAAATTTTA
1 TAAT-TTTTTTATAATTTTA
* * *
71778811 TTATTTTTTAAATAATTTTC
1 TAATTTTTT-TATAATTTTA
* *
71778831 T-ATATTTTTAAAAATTTTA
1 TAAT-TTTTTTATAATTTTA
71778850 -AATTTTTTTA-AATTTATA
1 TAATTTTTTTATAATTT-TA
*
71778868 TAATTTTTTTATAATTTAAA
1 TAATTTTTTTATAATTT-TA
71778888 TAATTTTTT
1 TAATTTTTT
71778897 ATTTTTAATA
Statistics
Matches: 100, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
17 5 0.05
18 8 0.08
19 35 0.35
20 51 0.51
21 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (19 bp):
TAATTTTTTTATAATTTTA
Found at i:71779613 original size:17 final size:20
Alignment explanation
Indices: 71779574--71779614 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
71779564 TTTACTATTA
71779574 TGTTGTTATTGTATAATTCT
1 TGTTGTTATTGTATAATTCT
71779594 TGTT-TTATTGT-TAATT-T
1 TGTTGTTATTGTATAATTCT
71779611 TGTT
1 TGTT
71779615 ACTATTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.24
18 5 0.24
19 7 0.33
20 4 0.19
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.66
Consensus pattern (20 bp):
TGTTGTTATTGTATAATTCT
Found at i:71779620 original size:18 final size:19
Alignment explanation
Indices: 71779580--71779620 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
71779570 ATTATGTTGT
*
71779580 TATTGTATAATTCTTGTTT
1 TATTGTATAATTCTTGTTC
71779599 TATTGT-TAATT-TTGTTAC
1 TATTGTATAATTCTTGTT-C
71779617 TATT
1 TATT
71779621 TTAGAGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 9 0.45
19 6 0.30
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (19 bp):
TATTGTATAATTCTTGTTC
Found at i:71791833 original size:24 final size:24
Alignment explanation
Indices: 71791782--71791839 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
71791772 TCCTTCATTT
* * *
71791782 TCACCCTCACCCTCAGCCTCTCCA
1 TCACCCTCATCCTCAGCATCACCA
* *
71791806 TCACCCTCATCTTCAGCATCACCC
1 TCACCCTCATCCTCAGCATCACCA
*
71791830 TCACTCTCAT
1 TCACCCTCAT
71791840 TTTGACCATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.52, G:0.03, T:0.26
Consensus pattern (24 bp):
TCACCCTCATCCTCAGCATCACCA
Found at i:71795989 original size:22 final size:23
Alignment explanation
Indices: 71795963--71796006 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
71795953 ATACTTATAA
71795963 TTTAAAT-AATAA-AATTGGAATT
1 TTTAAATCAA-AATAATTGGAATT
71795985 TTTAAATCAAAATAATTGGAAT
1 TTTAAATCAAAATAATTGGAAT
71796007 AATTGATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (23 bp):
TTTAAATCAAAATAATTGGAATT
Found at i:71796898 original size:47 final size:47
Alignment explanation
Indices: 71796845--71797112 Score: 304
Period size: 47 Copynumber: 5.7 Consensus size: 47
71796835 TATTGGCTTT
* * * *
71796845 GTGGCATATTTTGTATGTTGCCTTTATGGCATACCCTGATAACCTAA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
*
71796892 GTGGCATATTTTGTATGTTGCCTTTGTGGCGTACTCTGATAGCCTTA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
* * *
71796939 GTGGCATATTTTGTTTGTTGCTTTTGTGGTATACTCTGATAGCCTTA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
* * * * * *
71796986 GCT-ACGTATTATGTATATTTCCTTTGTGGCGTACTCTGATAGCCTTA
1 G-TGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
*** * * * *
71797033 GTGGCATATTCAATATGTTGCTTTTGTAGCGTACTCTGATAGCCTTT
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
* * *
71797080 GTGGCGTATTCTGTATATTGCCTTTGTGGCATA
1 GTGGCATATTTTGTATGTTGCCTTTGTGGCATA
71797113 TTTTGTATGG
Statistics
Matches: 184, Mismatches: 35, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
46 1 0.01
47 182 0.99
48 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (47 bp):
GTGGCATATTTTGTATGTTGCCTTTGTGGCATACTCTGATAGCCTTA
Found at i:71797010 original size:94 final size:94
Alignment explanation
Indices: 71796845--71797109 Score: 343
Period size: 94 Copynumber: 2.8 Consensus size: 94
71796835 TATTGGCTTT
* * * * * * * *
71796845 GTGGCATATTTTGTATGTTGCCTTTATGGCATACCCTGATAACCTAAGTGGCATATTTTGTATGT
1 GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAGTGGCGTATTATGTATAT
71796910 TGCCTTTGTGGCGTACTCTGATAGCCTTA
66 TGCCTTTGTGGCGTACTCTGATAGCCTTA
* * *
71796939 GTGGCATATTTTGTTTGTTGCTTTTGTGGTATACTCTGATAGCCTTAGCT-ACGTATTATGTATA
1 GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAG-TGGCGTATTATGTATA
*
71797003 TTTCCTTTGTGGCGTACTCTGATAGCCTTA
65 TTGCCTTTGTGGCGTACTCTGATAGCCTTA
*** * * * *
71797033 GTGGCATATTCAATATGTTGCTTTTGTAGCGTACTCTGATAGCCTTTGTGGCGTATTCTGTATAT
1 GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAGTGGCGTATTATGTATAT
71797098 TGCCTTTGTGGC
66 TGCCTTTGTGGC
71797110 ATATTTTGTA
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 144 0.99
95 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (94 bp):
GTGGCATATTTTGTATGTTGCTTTTGTGGCATACTCTGATAGCCTTAGTGGCGTATTATGTATAT
TGCCTTTGTGGCGTACTCTGATAGCCTTA
Found at i:71797086 original size:22 final size:22
Alignment explanation
Indices: 71797006--71797109 Score: 75
Period size: 22 Copynumber: 4.5 Consensus size: 22
71796996 ATGTATATTT
71797006 CCTTTGTGGCGTACTCTGATAG
1 CCTTTGTGGCGTACTCTGATAG
* * * *
71797028 CCTTAGTGGCATATTCAAT-ATGTTG
1 CCTTTGTGGCGTACTC--TGA--TAG
* *
71797053 CTTTTGTAGCGTACTCTGATAG
1 CCTTTGTGGCGTACTCTGATAG
*
71797075 CCTTTGTGGCGTATTCTGTATATTG
1 CCTTTGTGGCGTACTCTG-ATA--G
71797100 CCTTTGTGGC
1 CCTTTGTGGC
71797110 ATATTTTGTA
Statistics
Matches: 61, Mismatches: 13, Indels: 13
0.70 0.15 0.15
Matches are distributed among these distances:
22 30 0.49
23 5 0.08
24 2 0.03
25 24 0.39
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.41
Consensus pattern (22 bp):
CCTTTGTGGCGTACTCTGATAG
Found at i:71802384 original size:42 final size:42
Alignment explanation
Indices: 71802274--71802428 Score: 116
Period size: 43 Copynumber: 3.6 Consensus size: 42
71802264 CCGTATAATG
* * * *
71802274 CCAATGTCCCAGACATGGTCTTACATGTAA-TCAAATATCGCTG
1 CCAATGTCCCAGACATGGTCTTACACGAAACTC-AA-ATCGATA
* * * * *
71802317 CCACTATTCCAGATAAGGTCTTACACGAAA-TCAAATACGATA
1 CCAATGTCCCAGACATGGTCTTACACGAAACTCAAAT-CGATA
* * * *
71802359 CCGATGTCCCATACATGGTCTTACACCTAAATCTCAAATCGATG
1 CCAATGTCCCAGACATGGTCTTACA-CGAAA-CTCAAATCGATA
* *
71802403 CCAATGTTCCAGACATGGTCTCACAC
1 CCAATGTCCCAGACATGGTCTTACAC
71802429 AATAACACAC
Statistics
Matches: 86, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
41 2 0.02
42 23 0.27
43 30 0.35
44 25 0.29
45 6 0.07
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGAAACTCAAATCGATA
Found at i:71816998 original size:39 final size:39
Alignment explanation
Indices: 71816919--71817001 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
71816909 ATTAAAAATA
* *
71816919 ATATATATGTTTTATTTATAGCTGAAAGTTTGAAATTTT
1 ATATATATGTTTTATTTATAGCTAAAAGTATGAAATTTT
* *
71816958 ATATATTTGTTTTATTTATAGCTAAAAGTAT-AATTATTT
1 ATATATATGTTTTATTTATAGCTAAAAGTATGAAAT-TTT
71816997 ATATA
1 ATATA
71817002 ATAAAAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 3 0.08
39 36 0.92
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (39 bp):
ATATATATGTTTTATTTATAGCTAAAAGTATGAAATTTT
Found at i:71824751 original size:3 final size:3
Alignment explanation
Indices: 71824743--71825033 Score: 98
Period size: 3 Copynumber: 97.3 Consensus size: 3
71824733 TTTTAATACC
* * * *
71824743 ATT ATT ATT ACT ACTT CT- ATT ATT -TT -TT ACT ATT ATT ATT TTT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
71824786 CATAT ATAT ATT ATT -TAT ATT ATT GTT ATC ATT ACT ATT ATT AAT ATT
1 -AT-T AT-T ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** * * * *
71824834 CTT ATT ATT GCT ATT ATT ATT TTT ACT ATT ATT ACT ATT TTT ATTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
* * *
71824880 ACTT -TT ATT ATT ATT AAT ATT ATT ATT ATC A-T CTT ATT -TT ATT
1 A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * * * * * *
71824923 ACT ATT ATC ATT TTT GTA ATT ACT ATT ACT ATT TTT TTT A-A ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
71824970 ACT ACT ACT ATT ATT ATT ATT ATT ATT A-T ATT -TT TTT GTT TTT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
*
71825017 ATAC ATT ATT ATT ATT A
1 AT-T ATT ATT ATT ATT A
71825034 AATTAATTAA
Statistics
Matches: 212, Mismatches: 60, Indels: 32
0.70 0.20 0.11
Matches are distributed among these distances:
2 15 0.07
3 177 0.83
4 19 0.09
5 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:71824784 original size:15 final size:15
Alignment explanation
Indices: 71824685--71824930 Score: 104
Period size: 15 Copynumber: 16.4 Consensus size: 15
71824675 TTTGTTGTTT
71824685 TATTA-TATTATTAC
1 TATTATTATTATTAC
*
71824699 TATTTTTATTA-TAC
1 TATTATTATTATTAC
71824713 T-TGTATT-TATATTTA-
1 TAT-TATTAT-TA-TTAC
* *
71824728 TTTTATT-TTAATAC
1 TATTATTATTATTAC
* *
71824742 CATTATTATTACTAC
1 TATTATTATTATTAC
*
71824757 T-TCTATTATTTTTTAC
1 TAT-TATTA-TTATTAC
* *
71824773 TATTATTATTTTTCATA
1 TATTATTATTATT-A-C
*
71824790 TATATATTATT-TATAT
1 TAT-TATTATTAT-TAC
* *
71824806 TATTGTTATCATTAC
1 TATTATTATTATTAC
*
71824821 TATTATTAATATT-C
1 TATTATTATTATTAC
*
71824835 TTATTATTGCTATTATTAT
1 -TATTA-T--TATTATTAC
* *
71824854 TTTTACTATTATTAC
1 TATTATTATTATTAC
*
71824869 TATTTTTA-T-TTAC
1 TATTATTATTATTAC
* *
71824882 TTTTATTATTATTAA
1 TATTATTATTATTAC
*
71824897 TATTATTATTATCA-
1 TATTATTATTATTAC
*
71824911 TCTTATT-TTATTAC
1 TATTATTATTATTAC
71824925 TATTAT
1 TATTAT
71824931 CATTTTTGTA
Statistics
Matches: 175, Mismatches: 33, Indels: 48
0.68 0.13 0.19
Matches are distributed among these distances:
13 19 0.11
14 35 0.20
15 77 0.44
16 20 0.11
17 6 0.03
18 18 0.10
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.62
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:71837520 original size:79 final size:84
Alignment explanation
Indices: 71837342--71837503 Score: 235
Period size: 79 Copynumber: 2.0 Consensus size: 84
71837332 AATGTAAAAT
*
71837342 AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGGTTTAA
1 AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGATTTAA
*
71837407 GTCTTGTTTGTGGGTTTTA
66 ATCTTGTTTGTGGGTTTTA
* * *
71837426 AAATAAATTATTATTTATAAAATTAAATTAAAA-A-A-A-A-AGAAAAGTTTGAATATGATTTAA
1 AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGATTTAA
*
71837486 ATCTTGTTTGTGGATTTT
66 ATCTTGTTTGTGGGTTTT
71837504 TTAAAAATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
79 37 0.51
80 1 0.01
81 1 0.01
82 1 0.01
83 1 0.01
84 31 0.43
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (84 bp):
AAATAAATTATTATTTATAAAATAAAACTAAAAGAGAGAGAGAGAAAAGTTTAAATATGATTTAA
ATCTTGTTTGTGGGTTTTA
Found at i:71846061 original size:18 final size:18
Alignment explanation
Indices: 71846038--71846083 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
71846028 TATAAATTTA
*
71846038 AAAAATATATAATACATC
1 AAAAATATATAAAACATC
71846056 AAAAATACTA-AAAACATC
1 AAAAATA-TATAAAACATC
*
71846074 AAAAAAATAT
1 AAAAATATAT
71846084 TTCCCAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (18 bp):
AAAAATATATAAAACATC
Found at i:71847503 original size:22 final size:22
Alignment explanation
Indices: 71847477--71847581 Score: 87
Period size: 22 Copynumber: 5.0 Consensus size: 22
71847467 TCGATTATTG
*
71847477 GCACATTAATGCTCTCTGTTTA
1 GCACATTAGTGCTCTCTGTTTA
* *
71847499 GCACATTTGTGCTCTCTGTATA
1 GCACATTAGTGCTCTCTGTTTA
* *
71847521 --ACA--A-TGCTTTCCGTTTA
1 GCACATTAGTGCTCTCTGTTTA
* *
71847538 GCACATTTGTGCTCTCTGTAT-
1 GCACATTAGTGCTCTCTGTTTA
*
71847559 GACACTTTAGTGCTCTCTGTTTA
1 G-CACATTAGTGCTCTCTGTTTA
71847582 ATAGTGCATA
Statistics
Matches: 62, Mismatches: 14, Indels: 13
0.70 0.16 0.15
Matches are distributed among these distances:
17 10 0.16
19 3 0.05
20 3 0.05
21 1 0.02
22 45 0.73
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (22 bp):
GCACATTAGTGCTCTCTGTTTA
Found at i:71847528 original size:39 final size:39
Alignment explanation
Indices: 71847484--71847558 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
71847474 TTGGCACATT
*
71847484 AATGCTCTCTGTTTAGCACATTTGTGCTCTCTGTATAAC
1 AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
*
71847523 AATGCTTTCCGTTTAGCACATTTGTGCTCTCTGTAT
1 AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTAT
71847559 GACACTTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.43
Consensus pattern (39 bp):
AATGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAAC
Found at i:71849784 original size:17 final size:17
Alignment explanation
Indices: 71849762--71849800 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
71849752 AAAATCCCTA
71849762 TTTCTCCCTTTT-CTTTC
1 TTTCT-CCTTTTCCTTTC
*
71849779 TTTCTCTTTTTCCTTTC
1 TTTCTCCTTTTCCTTTC
71849796 TTTCT
1 TTTCT
71849801 TTCTCCCCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTCTCCTTTTCCTTTC
Found at i:71849865 original size:2 final size:2
Alignment explanation
Indices: 71849858--71849907 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
71849848 TTGTTTCTTT
* * *
71849858 TA TA TA TA TA TA TG TA TA TA TA TA TG TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
71849900 TA TA TA TA
1 TA TA TA TA
71849908 CTAATTAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:71849877 original size:12 final size:12
Alignment explanation
Indices: 71849860--71849906 Score: 94
Period size: 12 Copynumber: 3.9 Consensus size: 12
71849850 GTTTCTTTTA
71849860 TATATATATATG
1 TATATATATATG
71849872 TATATATATATG
1 TATATATATATG
71849884 TATATATATATG
1 TATATATATATG
71849896 TATATATATAT
1 TATATATATAT
71849907 ACTAATTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (12 bp):
TATATATATATG
Found at i:71850177 original size:3 final size:3
Alignment explanation
Indices: 71850169--71850194 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
71850159 ACTTTATTTG
71850169 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
71850195 TTAATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:71850454 original size:24 final size:24
Alignment explanation
Indices: 71850398--71850454 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
71850388 TCTATTTTTG
* *
71850398 TACATTTGAACAATATTAATACCA
1 TACATTTGTACAATATCAATACCA
71850422 TACATTTGTACAATATCAATACCA
1 TACATTTGTACAATATCAATACCA
*
71850446 TACAATTGT
1 TACATTTGT
71850455 CATAGATTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (24 bp):
TACATTTGTACAATATCAATACCA
Found at i:71850753 original size:3 final size:3
Alignment explanation
Indices: 71850745--71850793 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
71850735 TTAACTTATT
71850745 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
71850793 T
1 T
71850794 CTAAATTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:71858134 original size:20 final size:20
Alignment explanation
Indices: 71858091--71858157 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
71858081 GACCAAGGGT
* **
71858091 AAAGTATTGATACTTTGAAA
1 AAAGTATAGATACTTTGAGC
* *
71858111 AAAGTATAGATGCTTTTAGC
1 AAAGTATAGATACTTTGAGC
* *
71858131 AAAGTGTAGATACTTTGAGT
1 AAAGTATAGATACTTTGAGC
71858151 AAAGTAT
1 AAAGTAT
71858158 CAGTACTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.34
Consensus pattern (20 bp):
AAAGTATAGATACTTTGAGC
Found at i:71863551 original size:40 final size:40
Alignment explanation
Indices: 71863514--71863697 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
71863504 GCTACTCGTT
*
71863514 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
71863554 CAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
71863594 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * * *
71863633 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
71863674 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
71863698 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.61
41 14 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:71863625 original size:79 final size:82
Alignment explanation
Indices: 71863514--71863698 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
71863504 GCTACTCGTT
* * *
71863514 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
71863577 GGATTTAGTAAC-TCGCA
65 GAATATAGTAACTTAGCA
* **
71863594 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
71863657 AATATGGTCACTTAGCA
66 AATATAGTAACTTAGCA
71863674 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71863699 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
AATATAGTAACTTAGCA
Found at i:71865991 original size:13 final size:13
Alignment explanation
Indices: 71865973--71865998 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71865963 ATTATTACTT
71865973 ACCTTATCTTAGA
1 ACCTTATCTTAGA
71865986 ACCTTATCTTAGA
1 ACCTTATCTTAGA
71865999 TGTCCCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
ACCTTATCTTAGA
Found at i:71866237 original size:17 final size:18
Alignment explanation
Indices: 71866207--71866240 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71866197 AATTTTTATT
*
71866207 CAATTTATTCCCTAATTC
1 CAATTTAATCCCTAATTC
71866225 CAATTTAAT-CCTAATT
1 CAATTTAATCCCTAATT
71866241 AACTCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (18 bp):
CAATTTAATCCCTAATTC
Found at i:71866686 original size:17 final size:17
Alignment explanation
Indices: 71866664--71866698 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
71866654 TGTTCTCTGC
71866664 TTCTTTT-CTGTTCTTTT
1 TTCTTTTACT-TTCTTTT
71866681 TTCTTTTACTTTCTTTT
1 TTCTTTTACTTTCTTTT
71866698 T
1 T
71866699 ATTCTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (17 bp):
TTCTTTTACTTTCTTTT
Found at i:71871874 original size:21 final size:21
Alignment explanation
Indices: 71871850--71871891 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
71871840 TAAGCCTAAG
71871850 CTAAATAAAAAAGAAGTTATC
1 CTAAATAAAAAAGAAGTTATC
71871871 CTAAATAAAAAAGAAGTTATC
1 CTAAATAAAAAAGAAGTTATC
71871892 TATTAAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.24
Consensus pattern (21 bp):
CTAAATAAAAAAGAAGTTATC
Found at i:71873882 original size:18 final size:17
Alignment explanation
Indices: 71873850--71873883 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
71873840 TTTAGTTATT
71873850 TGTTTTTTAATTTAATC
1 TGTTTTTTAATTTAATC
*
71873867 TGTTTGTTTTATTTAAT
1 TGTTT-TTTAATTTAAT
71873884 TTTATCATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.68
Consensus pattern (17 bp):
TGTTTTTTAATTTAATC
Found at i:71875691 original size:17 final size:18
Alignment explanation
Indices: 71875669--71875703 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
71875659 ATGTTTAGTT
71875669 ATTTGTTT-TTTAATTTA
1 ATTTGTTTGTTTAATTTA
*
71875686 ATTTGTTTGTTTTATTTA
1 ATTTGTTTGTTTAATTTA
71875704 GTTTTTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (18 bp):
ATTTGTTTGTTTAATTTA
Found at i:71877506 original size:15 final size:15
Alignment explanation
Indices: 71877486--71877515 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71877476 ATCGTGGTTT
*
71877486 TTTTTTAGTTTTTAA
1 TTTTTTAGTTCTTAA
71877501 TTTTTTAGTTCTTAA
1 TTTTTTAGTTCTTAA
71877516 ATTTATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (15 bp):
TTTTTTAGTTCTTAA
Found at i:71877835 original size:21 final size:21
Alignment explanation
Indices: 71877811--71877854 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
71877801 GCACTAAAAA
71877811 AAGTTAAAATAAAAGTTTTCT
1 AAGTTAAAATAAAAGTTTTCT
*
71877832 AAGTTAAAATAAAGGTTTTCT
1 AAGTTAAAATAAAAGTTTTCT
71877853 AA
1 AA
71877855 CACATTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.36
Consensus pattern (21 bp):
AAGTTAAAATAAAAGTTTTCT
Found at i:71877985 original size:19 final size:20
Alignment explanation
Indices: 71877944--71877985 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
71877934 ACACAAATAA
71877944 ATATAATAAATATTTTATTAT
1 ATATAATAAATATTTTA-TAT
71877965 ATATAA-AAATTATTTTA-AT
1 ATATAATAAA-TATTTTATAT
71877984 AT
1 AT
71877986 TTTTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.20
20 3 0.15
21 13 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATAATAAATATTTTATAT
Found at i:71878724 original size:36 final size:36
Alignment explanation
Indices: 71878683--71878755 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
71878673 TGGTACGAAC
71878683 TATGCCGCACAAGTAGAATCCATATTAGTGAATTTT
1 TATGCCGCACAAGTAGAATCCATATTAGTGAATTTT
71878719 TATGCCGCACAAGTAGAATCCATATTAGTGAATTTT
1 TATGCCGCACAAGTAGAATCCATATTAGTGAATTTT
71878755 T
1 T
71878756 CTTTTCTACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Consensus pattern (36 bp):
TATGCCGCACAAGTAGAATCCATATTAGTGAATTTT
Found at i:71879191 original size:3 final size:3
Alignment explanation
Indices: 71879183--71879210 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
71879173 AACTCATCTC
71879183 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
71879211 GGGGAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:71880350 original size:14 final size:14
Alignment explanation
Indices: 71880331--71880373 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
71880321 ATATATTGCA
*
71880331 GTTTATCTACAAGC
1 GTTTATCAACAAGC
71880345 GTTTATCAACAAGC
1 GTTTATCAACAAGC
71880359 GTTTATCAACAAGC
1 GTTTATCAACAAGC
71880373 G
1 G
71880374 ATATGAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (14 bp):
GTTTATCAACAAGC
Found at i:71886264 original size:10 final size:10
Alignment explanation
Indices: 71886245--71886286 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
71886235 AGGCAAAATG
*
71886245 AAAATAAAAA
1 AAAATGAAAA
71886255 AAAATGAAAA
1 AAAATGAAAA
71886265 AAAATGAAAA
1 AAAATGAAAA
71886275 AAAAT-AAAA
1 AAAATGAAAA
71886284 AAA
1 AAA
71886287 TAAATAGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 7 0.23
10 24 0.77
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.10
Consensus pattern (10 bp):
AAAATGAAAA
Found at i:71887405 original size:16 final size:16
Alignment explanation
Indices: 71887384--71887416 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
71887374 TATGAACAAC
*
71887384 ATGAAAATCATCATAT
1 ATGAAAATCAACATAT
71887400 ATGAAAATCAACATAT
1 ATGAAAATCAACATAT
71887416 A
1 A
71887417 CTAAGTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (16 bp):
ATGAAAATCAACATAT
Found at i:71892239 original size:28 final size:28
Alignment explanation
Indices: 71892197--71892253 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
71892187 TTCAAAGAAA
*
71892197 TGAGAAAGAATTGAATGGAGAATACTAT
1 TGAGAAAGAACTGAATGGAGAATACTAT
71892225 TGAGAAAGAACTGAATGGAGAATACTAT
1 TGAGAAAGAACTGAATGGAGAATACTAT
71892253 T
1 T
71892254 CCTAGGCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.05, G:0.25, T:0.25
Consensus pattern (28 bp):
TGAGAAAGAACTGAATGGAGAATACTAT
Found at i:71892716 original size:22 final size:23
Alignment explanation
Indices: 71892691--71892736 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
71892681 CAACCAAACC
71892691 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
71892713 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
71892736 A
1 A
71892737 TGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:71901993 original size:25 final size:24
Alignment explanation
Indices: 71901962--71902033 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
71901952 GGTACACTCT
*
71901962 TATTGAGCAGATAAATAGTAAGCTC
1 TATTGAGCAGA-AAACAGTAAGCTC
* *
71901987 TATTGAGCTGAAAACGGTAAGCTC
1 TATTGAGCAGAAAACAGTAAGCTC
*
71902011 TATTGAGCTG--AACAGTAAGCTC
1 TATTGAGCAGAAAACAGTAAGCTC
71902033 T
1 T
71902034 TTCGAGATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
22 12 0.28
24 21 0.49
25 10 0.23
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (24 bp):
TATTGAGCAGAAAACAGTAAGCTC
Found at i:71902087 original size:23 final size:22
Alignment explanation
Indices: 71901974--71902079 Score: 83
Period size: 23 Copynumber: 4.6 Consensus size: 22
71901964 TTGAGCAGAT
71901974 AAATAGTAAGCTCTATTGAGCTG
1 AAATAGTAAGCTCTA-TGAGCTG
71901997 AAA-ACGGTAAGCTCTATTGAGCTG
1 AAATA--GTAAGCTCTA-TGAGCTG
* * *
71902021 -AACAGTAAGCTCTTTCGAGATG
1 AAATAGTAAGCTCTAT-GAGCTG
* *
71902043 -AATCAGTATGCTACAATGAGCTG
1 AAAT-AGTAAGCT-CTATGAGCTG
71902066 AAATAGTAAGCTCT
1 AAATAGTAAGCTCT
71902080 TACGAGCTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
21 1 0.01
22 18 0.27
23 24 0.36
24 24 0.36
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (22 bp):
AAATAGTAAGCTCTATGAGCTG
Found at i:71932389 original size:38 final size:40
Alignment explanation
Indices: 71932347--71932457 Score: 142
Period size: 39 Copynumber: 2.9 Consensus size: 40
71932337 TGATACTTGA
71932347 GGAATGTTATCCAGGC-TAAAGA-CCGCAGGCT-TCATGCT
1 GGAATGTTATCCAGGCTTAAAGACCCGCAGGCTAT-ATGCT
*
71932385 GGAAT-TGTATCCGGGCTTAAAGACCCGCA-GCTATATGCT
1 GGAATGT-TATCCAGGCTTAAAGACCCGCAGGCTATATGCT
* *
71932424 GGAATGTTATCCAGGCTTAAAGATCTGCAGGCTA
1 GGAATGTTATCCAGGCTTAAAGACCCGCAGGCTA
71932458 CGAGCTGGTA
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
37 1 0.02
38 13 0.21
39 38 0.60
40 11 0.17
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
GGAATGTTATCCAGGCTTAAAGACCCGCAGGCTATATGCT
Found at i:71939927 original size:40 final size:40
Alignment explanation
Indices: 71939900--71940036 Score: 233
Period size: 40 Copynumber: 3.4 Consensus size: 40
71939890 TATCTGGGAC
*
71939900 TAAAGACCCGCAGGCT-TCGTGCTGGAATTGTATCCGGGCT
1 TAAAGACCCGCAGGCTAT-ATGCTGGAATTGTATCCGGGCT
71939940 TAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCT
1 TAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCT
71939980 TAAAGACCCGCAGGCTATATGCTGGAA-TGTTATCCGGGCT
1 TAAAGACCCGCAGGCTATATGCTGGAATTG-TATCCGGGCT
71940020 TAAAGACCCGCAGGCTA
1 TAAAGACCCGCAGGCTA
71940037 CGAGCTGGTA
Statistics
Matches: 94, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCT
Found at i:71940044 original size:40 final size:40
Alignment explanation
Indices: 71939900--71940061 Score: 215
Period size: 40 Copynumber: 4.1 Consensus size: 40
71939890 TATCTGGGAC
*
71939900 TAAAGACCCGCAGGCTTCG-TGCTGGAATTGTATCCGGGCT
1 TAAAGACCCGCAGGC-TAGATGCTGGAATTGTATCCGGGCT
*
71939940 TAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCT
1 TAAAGACCCGCAGGCTAGATGCTGGAATTGTATCCGGGCT
*
71939980 TAAAGACCCGCAGGCTATATGCTGGAA-TGTTATCCGGGCT
1 TAAAGACCCGCAGGCTAGATGCTGGAATTG-TATCCGGGCT
* * *
71940020 TAAAGACCCGCAGGCTACGA-GCTGGTATTATA-CCGGGTT
1 TAAAGACCCGCAGGCTA-GATGCTGGAATTGTATCCGGGCT
71940059 TAA
1 TAA
71940062 CTTCCCGTAG
Statistics
Matches: 112, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
39 12 0.11
40 98 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAAGACCCGCAGGCTAGATGCTGGAATTGTATCCGGGCT
Found at i:71953239 original size:13 final size:13
Alignment explanation
Indices: 71953202--71953233 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
71953192 CCTCTCTCAT
71953202 TCTCTCCT-AAAA
1 TCTCTCCTCAAAA
71953214 TCTCTCCTCAAAA
1 TCTCTCCTCAAAA
71953227 TC-CTCCT
1 TCTCTCCT
71953234 TGAAAACGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (13 bp):
TCTCTCCTCAAAA
Found at i:71954714 original size:46 final size:46
Alignment explanation
Indices: 71954664--71954839 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
71954654 TGGTTGAGCA
71954664 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71954710 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71954755 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
71954803 CCCGAGCTCGTTGAGTTGAGTCAGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71954840 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71954820 original size:93 final size:93
Alignment explanation
Indices: 71954661--71954832 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
71954651 GGATGGTTGA
* *
71954661 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
71954726 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCAGAGTTCGTGAGATGTAACTAG
*
71954754 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71954819 TGAGTCAGAGTTCG
66 TGAGTCAGAGTTCG
71954833 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCAGAGTTCGTGAGATGTAACTAG
Found at i:71964803 original size:53 final size:53
Alignment explanation
Indices: 71964723--71964827 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
71964713 ATCCTTTTAA
* * * *
71964723 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTATG
1 AACTCACCAATGCCATGCCTCGACATGGTCTTACATGGGA-CCTTTGCCTTATG
* *
71964776 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAT
1 AACTCACCAATGCCATGCCTCGACATGGTCTTACATGGGACCTTTGCCTTAT
71964828 AGTAACTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.04
53 43 0.96
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (53 bp):
AACTCACCAATGCCATGCCTCGACATGGTCTTACATGGGACCTTTGCCTTATG
Found at i:71972563 original size:55 final size:53
Alignment explanation
Indices: 71972376--71972629 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
71972366 ACACGGGTAC
* * * *
71972376 CTTACC-ATGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
71972424 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * * *
71972477 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* **
71972532 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * *
71972585 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
71972630 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
48 6 0.04
49 29 0.17
50 1 0.01
52 2 0.01
53 47 0.28
54 10 0.06
55 72 0.43
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:71972565 original size:108 final size:110
Alignment explanation
Indices: 71972422--71972622 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
71972412 ATCCTTTTGA
* *
71972422 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
71972485 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
* * *
71972530 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
71972595 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
71972623 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
Found at i:71974092 original size:48 final size:48
Alignment explanation
Indices: 71973971--71974379 Score: 232
Period size: 48 Copynumber: 8.7 Consensus size: 48
71973961 TAGGGTATAA
* * * * *
71973971 TGCCGATGCCATGTCCCAAACATGGTCTTACACT-AGCTCTTACATATCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACCT-C-TATACG
* ** *
71974021 TGTCGATGCCATGTCTTAAACATGGTCTTACACTGACACCTCTATACG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACG
* *
71974069 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAGACCTCTACACG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACG
* * * * * *
71974117 TGCCAATACCATATCCCAGAGATGGTCTTACACTAACACATCT-T--G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACG
* * * *
71974162 TAGCTGATG-CATGTCCCAGACATAGTCTTACACTAACACATC--T-CG
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACG
* * * * * * **
71974207 TAGCTGATG-CATGTCCTAGATAT-GTTTTACACTGGCTTACTTCTCGA-G
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCTATACG
*
71974255 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTCGTCTCA-A--
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-C-TCT-ATACG
* * * * *
71974300 TGCCAATGCGATGTCCCAAACATGGTCTTACACTGGC-TCTC-ATAACG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-ACG
71974347 TGGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
71974380 AGCACACAAT
Statistics
Matches: 288, Mismatches: 50, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 12 0.04
45 57 0.20
46 57 0.20
47 25 0.09
48 100 0.35
49 1 0.00
50 34 0.12
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACG
Found at i:71974191 original size:45 final size:44
Alignment explanation
Indices: 71974130--71974286 Score: 181
Period size: 45 Copynumber: 3.5 Consensus size: 44
71974120 CAATACCATA
* *
71974130 TCCCAGAGATGGTCTTACACTAACACATCTTGTAGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTAACACATCTCGTAGCTGATGCATG
71974175 TCCCAGACATAGTCTTACACTAACACATCTCGTAGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTAACACATCTCGTAGCTGATGCATG
* * * ** * *
71974220 TCCTAGATATGTTTTACACTGGCTTACTTCTCG-AGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAAC--ACATCTCGTA-GCTGATGCATG
71974266 TCCCAGACATGTCTTACACTA
1 TCCCAGACATGTCTTACACTA
71974287 GCTCTCGTCT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
44 10 0.11
45 51 0.54
46 34 0.36
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTAACACATCTCGTAGCTGATGCATG
Found at i:71974316 original size:47 final size:46
Alignment explanation
Indices: 71974254--71974382 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 46
71974244 TACTTCTCGA
* * **
71974254 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAC-AT
* * *
71974301 -GCCAATGCGATGTCCCAAACATGGTCTTACACTGGCTCTCATAACGT
1 GGCCAATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAACAT
*
71974348 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGC
71974383 ACACAATATC
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
46 19 0.28
47 25 0.36
48 25 0.36
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (46 bp):
GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAACAT
Found at i:71975907 original size:22 final size:22
Alignment explanation
Indices: 71975882--71975962 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
71975872 TGAGTTGATA
*
71975882 AACATTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATTGAGCTG
*
71975904 AACAGTAAACTCT-TTCGAGCTG
1 AACAGTAAGCTCTATT-GAGCTG
* *
71975926 AATCGGTAAGCTAC-AATGAGCTG
1 AA-CAGTAAGCT-CTATTGAGCTG
71975949 AAACAGTAAGCTCT
1 -AACAGTAAGCTCT
71975963 TACGTGCTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
21 2 0.04
22 20 0.43
23 21 0.45
24 4 0.09
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:71983302 original size:48 final size:47
Alignment explanation
Indices: 71983245--71983574 Score: 240
Period size: 48 Copynumber: 6.9 Consensus size: 47
71983235 GGTGAATTGT
* * *
71983245 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGT
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * * ** * * * *
71983293 TGATGCCATGTCCCAGACATGGTCCTACACCAGCTCTCATCTCAATGT
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * * * **
71983341 CGTTGTCATG-TCCTAGACATGGTCTTACACTAG--CGCATATCAATAC
1 CGATGCCATGTTCC-AGACATGGTCTTACACTGGCTCACATATC-AGGC
* * * * * *
71983387 TGATGCCATG-TCTCAGACATGGTCTTACATTGGCTCTCACAACATCGC
1 CGATGCCATGTTC-CAGACATGGTCTTACACTGGCTCACATATCA-GGC
* *
71983435 CGATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCACAATATC--GC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGG--CTCAC-ATATCAGGC
* * *
71983483 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATC-AGGC
* * *
71983531 CGATGCCATGTCCCAGACATAGTCTTACACTGGCACACATATCA
1 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATCA
71983575 CTTAAATGTC
Statistics
Matches: 225, Mismatches: 45, Indels: 25
0.76 0.15 0.08
Matches are distributed among these distances:
45 5 0.02
46 39 0.17
47 4 0.02
48 168 0.75
49 2 0.01
50 4 0.02
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATCAGGC
Found at i:71983405 original size:46 final size:45
Alignment explanation
Indices: 71983293--71983415 Score: 122
Period size: 46 Copynumber: 2.6 Consensus size: 45
71983283 ATGTCGAGGT
* * * *
71983293 TGATGCCATGTCCCAGACATGGTCCTACACCAGCTCTCATCTCAATG
1 TGATGCCATGT-CCAGACATGGTCTTACACCAGC-CGCATATCAATC
* * *
71983340 TCGTTGTCATGTCCTAGACATGGTCTTACACTAG-CGCATATCAATAC
1 T-GATGCCATGTCC-AGACATGGTCTTACACCAGCCGCATATCAAT-C
71983387 TGATGCCATGTCTCAGACATGGTCTTACA
1 TGATGCCATGTC-CAGACATGGTCTTACA
71983416 TTGGCTCTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
46 33 0.52
47 5 0.08
48 25 0.40
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
TGATGCCATGTCCAGACATGGTCTTACACCAGCCGCATATCAATC
Found at i:71991247 original size:25 final size:24
Alignment explanation
Indices: 71991171--71991248 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 24
71991161 CCATGTTCCA
*
71991171 AACATGGTCTTACACTGGCTCTTAC
1 AACATGGTCTTACA-TGGCTCTCAC
* * *
71991196 AACATCGCCTATGCCAT-GCTC-CA-
1 AACATGGTCT-T-ACATGGCTCTCAC
71991219 AACATGGTCTTACATTGGCTCTCAC
1 AACATGGTCTTACA-TGGCTCTCAC
71991244 AACAT
1 AACAT
71991249 CACTGATGCC
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 12 0.30
24 3 0.08
25 17 0.43
26 2 0.05
27 2 0.05
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (24 bp):
AACATGGTCTTACATGGCTCTCAC
Found at i:71991267 original size:144 final size:141
Alignment explanation
Indices: 71990964--71991333 Score: 501
Period size: 144 Copynumber: 2.6 Consensus size: 141
71990954 TCGTCTCAAT
* *
71990964 ACCGATGCCATGTACCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA-AACGTGGCCGATGCCATGTCCCA
* * * *
71991029 TACATGGTCTTACACTAGCGCATATCAATATCGATGCCATGTCCCAGACATGGTCCCACATTGGC
65 AACATGGTCTTACACTGGCGCATATCAACATCGATGCCATGTCCCAAACATGGTCCCACATTGGC
71991094 TCTCACAACATC
130 TCTCACAACATC
* * * * * *
71991106 GCCGATGCCATGTTCCAAACATGGTCTTCCACTGGCTCTCACAACATTGCTGATGCCATGTTCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA-AACGTGGCCGATGCCATGTCCCA
* * **
71991171 AACATGGTCTTACACTGGCTCTTA-CAACATCGCCTATGCCATG-CTCCAAACATGGTCTTACAT
65 AACATGGTCTTACACTGGCGCATATCAACATCG---ATGCCATGTC-CCAAACATGGTCCCACAT
71991234 TGGCTCTCACAACATC
126 TGGCTCTCACAACATC
*
71991250 ACTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAAATCGTGGCCGATGCCATGTCCCA
1 ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAAA-CGTGGCCGATGCCATGTCCCA
*
71991315 AACATAGTCTTACACTGGC
65 AACATGGTCTTACACTGGC
71991334 ACACATATCA
Statistics
Matches: 198, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
141 7 0.04
142 76 0.38
143 3 0.02
144 112 0.57
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (141 bp):
ACCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAAACGTGGCCGATGCCATGTCCCAA
ACATGGTCTTACACTGGCGCATATCAACATCGATGCCATGTCCCAAACATGGTCCCACATTGGCT
CTCACAACATC
Found at i:71991331 original size:48 final size:49
Alignment explanation
Indices: 71990868--71991333 Score: 412
Period size: 48 Copynumber: 9.7 Consensus size: 49
71990858 AGGGTGAATT
* ** *
71990868 GCCGATGCCATGTTCCAAACATGGT-TCTACACTGG-T-TCACCTGTCGA-G
1 GCCGATGCCATGTCCCAAACATGGTCT-TACACTGGCTCTCA-CAATC-ATC
* * * * *
71990916 GCCAATGCCATGTCACAGACATGGTCTTACACTAGCTCTCGTC--TCAAT-
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC-ACAATC-ATC
* * * * *
71990964 ACCGATGCCATGTACCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATCATC
* * *
71991012 GCCGATGCCATGTCCCATACATGGTCTTACACTAGCGCAT-ATCAAT-AT-
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCA-CAATCATC
* ** *
71991060 --CGATGCCATGTCCCAGACATGGTCCCACATTGGCTCTCACAA-CATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATCATC
* * *
71991106 GCCGATGCCATGTTCCAAACATGGTCTTCCACTGGCTCTCACAA-CATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATCATC
* * *
71991154 GCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTTACAA-CATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATCATC
* *
71991202 GCCTATGCCATG-CTCCAAACATGGTCTTACATTGGCTCTCACAA-CATC
1 GCCGATGCCATGTC-CCAAACATGGTCTTACACTGGCTCTCACAATCATC
* * * * *
71991250 ACTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA-AATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATCATC
*
71991298 GCCGATGCCATGTCCCAAACATAGTCTTACACTGGC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
71991334 ACACATATCA
Statistics
Matches: 344, Mismatches: 56, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
45 6 0.02
46 31 0.09
47 3 0.01
48 293 0.85
49 8 0.02
50 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACAATCATC
Found at i:72002661 original size:34 final size:34
Alignment explanation
Indices: 72002610--72002674 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
72002600 TTACTGTTAC
* *
72002610 TGAAATGGGCTAAGGCCC-ACACTGACACTGATAT
1 TGAAATGGGATAAGGCCCTA-ACTGAAACTGATAT
*
72002644 TGAAATGGGATATGGCCCTAACTGAAACTGA
1 TGAAATGGGATAAGGCCCTAACTGAAACTGA
72002675 ACTATCACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (34 bp):
TGAAATGGGATAAGGCCCTAACTGAAACTGATAT
Found at i:72005023 original size:13 final size:14
Alignment explanation
Indices: 72005005--72005033 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72004995 TCTATTTAAT
72005005 AATTTTT-TTCTAG
1 AATTTTTGTTCTAG
72005018 AATTTTTGTTCTAG
1 AATTTTTGTTCTAG
72005032 AA
1 AA
72005034 AATTAGTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (14 bp):
AATTTTTGTTCTAG
Found at i:72006255 original size:92 final size:92
Alignment explanation
Indices: 72006098--72006268 Score: 290
Period size: 92 Copynumber: 1.9 Consensus size: 92
72006088 GCCCATAAGT
* *
72006098 GAACTCGGACTCAACTCAACGAGCTCGGGAGTTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72006163 CGAGCTCGGATGCCAGTTACATCTCTC
66 CGAGCTCGGATGCCAGTTACATCTCTC
*
72006190 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGGA-ATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72006254 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
72006269 CAAATATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
91 3 0.04
92 71 0.96
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCAGTTACATCTCTC
Found at i:72006264 original size:46 final size:45
Alignment explanation
Indices: 72006090--72006264 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
72006080 TGTAACCCGC
*
72006090 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGAATTCGCAT
* *
72006136 CCGTAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATTCGCA--T
* *** *
72006181 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGA-ATTCGCAT
*
72006228 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72006265 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 6 0.06
46 89 0.82
47 5 0.05
48 3 0.03
49 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATTCGCAT
Found at i:72011782 original size:46 final size:46
Alignment explanation
Indices: 72011613--72011786 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
72011603 TAACCCGCCT
* *
72011613 ATAAGTGAACTCGAACTCAACTCAACGAGCTC-GAGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCC
* * *
72011659 ATATGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCC
*** *
72011705 ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
* *
72011752 ATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72011787 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 64 0.60
47 33 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC
Found at i:72011786 original size:93 final size:93
Alignment explanation
Indices: 72011619--72011790 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
72011609 GCCTATAAGT
* *
72011619 GAACTCGAACTCAACTCAACGAGCTCGAGCGTTCGCATCCATATGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72011684 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
72011712 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
72011776 ATGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
72011791 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72024096 original size:43 final size:43
Alignment explanation
Indices: 72024043--72024222 Score: 209
Period size: 43 Copynumber: 4.2 Consensus size: 43
72024033 AAAACTCCAC
** * ** *
72024043 AAAAGATCATGACTTTTAGCAACGTTTGTTGGAAAAGCGCCGCT
1 AAAAG-TCATGACTTTTAGCGGCGTTTGTGGGGGAAGCGCTGCT
* * **
72024087 AAAAGTCATGGA-TTTTAGCGGTGTTTTTGGGGGAAGTTCTGCT
1 AAAAGTCAT-GACTTTTAGCGGCGTTTGTGGGGGAAGCGCTGCT
* * *
72024130 AAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCACTGGT
1 AAAAGTCATGACTTTTAGCGGCGTTTGTGGGGGAAGCGCTGCT
*
72024173 AAAAGTCATGGCTTTTAGCGGCGTTTGTGGGGGAAGCGCTGCT
1 AAAAGTCATGACTTTTAGCGGCGTTTGTGGGGGAAGCGCTGCT
72024216 AAAAGTC
1 AAAAGTC
72024223 TTTTGTTACA
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.01
43 108 0.93
44 7 0.06
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.29
Consensus pattern (43 bp):
AAAAGTCATGACTTTTAGCGGCGTTTGTGGGGGAAGCGCTGCT
Found at i:72024635 original size:21 final size:21
Alignment explanation
Indices: 72024611--72024660 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
72024601 TCTGCTACAA
*
72024611 TCGCTACTACCTCTACCTCCC
1 TCGCTACTACCGCTACCTCCC
* ** *
72024632 TCGCTGCCGCCGCTGCCTCCC
1 TCGCTACTACCGCTACCTCCC
72024653 TCGCTACT
1 TCGCTACT
72024661 GCATCCGCTC
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.08, C:0.52, G:0.14, T:0.26
Consensus pattern (21 bp):
TCGCTACTACCGCTACCTCCC
Found at i:72030180 original size:13 final size:13
Alignment explanation
Indices: 72030162--72030191 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
72030152 TATGTTATGA
72030162 TATGATATATATT
1 TATGATATATATT
72030175 TATGATATATATT
1 TATGATATATATT
72030188 TATG
1 TATG
72030192 TATTATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:72030441 original size:16 final size:17
Alignment explanation
Indices: 72030420--72030451 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
72030410 GACAATGTGG
72030420 AAAATCACAT-GAAAAA
1 AAAATCACATGGAAAAA
72030436 AAAATCACATGGAAAA
1 AAAATCACATGGAAAA
72030452 TCACATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.66, C:0.12, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAATCACATGGAAAAA
Found at i:72031277 original size:12 final size:12
Alignment explanation
Indices: 72031256--72031296 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
72031246 CTTAGAAATT
72031256 GTAAATTGGATG
1 GTAAATTGGATG
*
72031268 GTAAAGTGGAT-
1 GTAAATTGGATG
72031279 -TAAATTGGATG
1 GTAAATTGGATG
*
72031290 GCAAATT
1 GTAAATT
72031297 AAATTACACC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
10 9 0.38
12 15 0.62
ACGTcount: A:0.37, C:0.02, G:0.29, T:0.32
Consensus pattern (12 bp):
GTAAATTGGATG
Found at i:72031302 original size:22 final size:22
Alignment explanation
Indices: 72031257--72031302 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
72031247 TTAGAAATTG
* **
72031257 TAAATTGGATGGTAAAGTGGAT
1 TAAATTGGATGGCAAAGTAAAT
*
72031279 TAAATTGGATGGCAAATTAAAT
1 TAAATTGGATGGCAAAGTAAAT
72031301 TA
1 TA
72031303 CACCTGCAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.24, T:0.33
Consensus pattern (22 bp):
TAAATTGGATGGCAAAGTAAAT
Found at i:72033437 original size:29 final size:28
Alignment explanation
Indices: 72033392--72033452 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
72033382 CATATGAAAC
* *
72033392 TTATTTTTTAAAATTTAGGGTTTATGGT
1 TTATTTTTTAAAATTTAAGATTTATGGT
*
72033420 TTATTTTTTAAGATTTTAAGATTTATGGT
1 TTATTTTTTAA-AATTTAAGATTTATGGT
72033449 TTAT
1 TTAT
72033453 AGTTTAGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (28 bp):
TTATTTTTTAAAATTTAAGATTTATGGT
Found at i:72033511 original size:20 final size:19
Alignment explanation
Indices: 72033479--72033518 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
72033469 TTAAGGTCTA
72033479 TAGTTTATGGGTTTAGAGGT
1 TAGTTTATGGGTTTA-AGGT
72033499 TAGTGTTAT-GGTTTAAGGT
1 TAGT-TTATGGGTTTAAGGT
72033518 T
1 T
72033519 TAGGGGGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (19 bp):
TAGTTTATGGGTTTAAGGT
Found at i:72034601 original size:111 final size:111
Alignment explanation
Indices: 72034403--72034742 Score: 331
Period size: 111 Copynumber: 3.0 Consensus size: 111
72034393 GACCTATAGC
** * * * ** * **
72034403 GGCGCTTT-CTGAAAAATGCCGCTAATACTCTATCTTTTGTGGCATTTTTAAGGCAGCACCGCTA
1 GGCGCTTTCCT-AAAAACACCGCTAATGCTCGATCTATTGCAGCATTATTAAGAAAGCACCGCTA
* *
72034467 ATGCCACTGAAGCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTT
65 ATGCCACAGAAGCTCAATATAAACGACGTCGTTCGGCTTAATCTTTT
* * * * *
72034514 GGCGCTTTCCTAGAAACACTGTTAATGCTCGATCTATTGCAGCATTATTAGGAAAGCGCCGCTAA
1 GGCGCTTTCCTAAAAACACCGCTAATGCTCGATCTATTGCAGCATTATTAAGAAAGCACCGCTAA
* * * *
72034579 TTCCACAGAAGCTCAATTTAAACGACGTCGTTCAGCTTAATATTTT
66 TGCCACAGAAGCTCAATATAAACGACGTCGTTCGGCTTAATCTTTT
* * * ** *
72034625 AGCAGCGCTTTCTTAAAAACACCGCTATTGCTCGATCTATTGCGGTGTTTTTAAGAAAGCACCGC
1 -G--GCGCTTTCCTAAAAACACCGCTAATGCTCGATCTATTGCAGCATTATTAAGAAAGCACCGC
* * * * * * *
72034690 TAATGCCACGGAAGCTCAATGTAAAAGATGTTGTTTGGCTGAATCTTTT
63 TAATGCCACAGAAGCTCAATATAAACGACGTCGTTCGGCTTAATCTTTT
72034739 GGCG
1 GGCG
72034743 GCGTTTTTTG
Statistics
Matches: 183, Mismatches: 42, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
111 90 0.49
112 3 0.02
113 1 0.01
114 89 0.49
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (111 bp):
GGCGCTTTCCTAAAAACACCGCTAATGCTCGATCTATTGCAGCATTATTAAGAAAGCACCGCTAA
TGCCACAGAAGCTCAATATAAACGACGTCGTTCGGCTTAATCTTTT
Found at i:72047280 original size:43 final size:43
Alignment explanation
Indices: 72047140--72047286 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
72047130 ACCGAGATGT
*
72047140 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGATAAT-A
** * * *
72047183 GATTATGTGTAAGACCAAGTCTGGGACATTGGCA-TCATTAATT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGA-TAATA
* * * * *
72047226 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTGATAGTA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGATAATA
*
72047269 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
72047287 ATATGGAATA
Statistics
Matches: 83, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 77 0.93
44 5 0.06
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGATAATA
Found at i:72049483 original size:22 final size:23
Alignment explanation
Indices: 72049439--72049483 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
72049429 ACTTGTACAA
* * *
72049439 CTTTTTTTTATATTTTCGTAATT
1 CTTTTTTTAATAGTTCCGTAATT
72049462 CTTTTTTTAATAGTTCCG-AATT
1 CTTTTTTTAATAGTTCCGTAATT
72049484 TTTGAACTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.62
Consensus pattern (23 bp):
CTTTTTTTAATAGTTCCGTAATT
Found at i:72060555 original size:93 final size:93
Alignment explanation
Indices: 72060447--72060621 Score: 316
Period size: 93 Copynumber: 1.9 Consensus size: 93
72060437 CGCCCATAAG
*
72060447 CGAACTCAGACTCAACTCAATGAGCTCA-AGCATTCGCATCCATAAGTGAACTCGGACTCAACTT
1 CGAACTCAGACTCAACTCAACGAGCTCAGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTT
72060511 AACGAGTTCGGATGCCTAGTTACATTTCA
65 AACGAGTTCGGATGCCTAGTTACATTTCA
*
72060540 CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTTA
72060605 ACGAGTTCGGATGCCTA
66 ACGAGTTCGGATGCCTA
72060622 AATATCCCAG
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
93 78 0.99
94 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTTA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:72060608 original size:46 final size:46
Alignment explanation
Indices: 72060440--72060612 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
72060430 TGTAACCCGC
* *
72060440 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCA-AGCATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCAGA-CATTCGCAT
* * * * *
72060486 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCAT
* *
72060536 --TTCA-CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
* * *
72060579 CCATAAGTGAACTCGGACTCAACTTAACGAGTTC
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTC
72060613 GGATGCCTAA
Statistics
Matches: 98, Mismatches: 19, Indels: 20
0.72 0.14 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 53 0.54
47 24 0.24
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:72060634 original size:46 final size:46
Alignment explanation
Indices: 72060491--72060634 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 46
72060481 CGCATCCATA
* **
72060491 AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTTACATTTC
1 AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTA--AACATCCC
* * * * * *** *
72060539 A-CGAACTCAGACTCAACTCAACGAGTTCAGA--CATTCGCATCCATA
1 AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAAACATCC--C
*
72060584 AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAAATATCCC
1 AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAAACATCCC
72060630 AGTGA
1 AGTGA
72060635 CATGTCACTT
Statistics
Matches: 70, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
43 3 0.04
45 3 0.04
46 31 0.44
47 26 0.37
48 7 0.10
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAAACATCCC
Found at i:72063049 original size:15 final size:15
Alignment explanation
Indices: 72063010--72063080 Score: 83
Period size: 15 Copynumber: 4.7 Consensus size: 15
72063000 CAAGAAAACT
72063010 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
72063025 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
72063040 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
72063055 GAATAAA-AATATCCA
1 GAATAAAGAA-ATCCA
*
72063070 GGATAAAGAAA
1 GAATAAAGAAA
72063081 CCTAAGATAC
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
14 3 0.06
15 41 0.87
16 3 0.06
ACGTcount: A:0.59, C:0.13, G:0.15, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:72063076 original size:30 final size:30
Alignment explanation
Indices: 72063010--72063089 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
72063000 CAAGAAAACT
*
72063010 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAGAAAAACCCA
*
72063040 GAATAAAGAAATCC-AGAATA-AAAATATCCA
1 GAATAAAGAAATCCAAG-ATAGAAAA-ACCCA
*
72063070 GGATAAAGAAA-CCTAAGATA
1 GAATAAAGAAATCC-AAGATA
72063090 CGATACTATG
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
29 7 0.16
30 34 0.79
31 2 0.05
ACGTcount: A:0.57, C:0.14, G:0.15, T:0.14
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAGAAAAACCCA
Found at i:72063603 original size:99 final size:99
Alignment explanation
Indices: 72063468--72063657 Score: 353
Period size: 99 Copynumber: 1.9 Consensus size: 99
72063458 TCTAAGAATG
*
72063468 GGTAAACACATAGAACATCTCAAAAGAGACTGCTAAATCTGTCCAGTCATAACTGTCACACTCAG
1 GGTAAACACATAGAACATCTCAAAAGAGACTACTAAATCTGTCCAGTCATAACTGTCACACTCAG
72063533 ATAGTTCACATTTCAAATATCATTTCTGAGAACA
66 ATAGTTCACATTTCAAATATCATTTCTGAGAACA
*
72063567 GGTAAACACATAGAACATCTCAAAAGAGACTACTAAATCTGTCCAGTCATAACTGTCGCACTCAG
1 GGTAAACACATAGAACATCTCAAAAGAGACTACTAAATCTGTCCAGTCATAACTGTCACACTCAG
*
72063632 ATAGTTCACATTTCAATTATCATTTC
66 ATAGTTCACATTTCAAATATCATTTC
72063658 CCCAACTAGT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 88 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (99 bp):
GGTAAACACATAGAACATCTCAAAAGAGACTACTAAATCTGTCCAGTCATAACTGTCACACTCAG
ATAGTTCACATTTCAAATATCATTTCTGAGAACA
Found at i:72074512 original size:16 final size:16
Alignment explanation
Indices: 72074493--72074529 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
72074483 TGTGAGTTCT
72074493 TCAGTCTGCAAGCTCA
1 TCAGTCTGCAAGCTCA
* *
72074509 TCAGCCTGTAAGCTCA
1 TCAGTCTGCAAGCTCA
72074525 TCAGT
1 TCAGT
72074530 TGCCTTAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (16 bp):
TCAGTCTGCAAGCTCA
Found at i:72075110 original size:13 final size:13
Alignment explanation
Indices: 72075092--72075117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72075082 TAAACTCTAC
72075092 TTTCAAGTTATGT
1 TTTCAAGTTATGT
72075105 TTTCAAGTTATGT
1 TTTCAAGTTATGT
72075118 ATTACACGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTCAAGTTATGT
Found at i:72077315 original size:26 final size:27
Alignment explanation
Indices: 72077271--72077329 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
72077261 AAATGGTAAA
* *
72077271 ATGAAATGTTTAGAAG-AAATTGTTAT
1 ATGAAATGTTTAGAAGAAAATAGATAT
** *
72077297 ATGAAATGTTTTTATGAAAATAGATAT
1 ATGAAATGTTTAGAAGAAAATAGATAT
72077324 ATGAAA
1 ATGAAA
72077330 CTGATATATG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (27 bp):
ATGAAATGTTTAGAAGAAAATAGATAT
Found at i:72078599 original size:17 final size:17
Alignment explanation
Indices: 72078577--72078611 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72078567 AAGAAGTATG
72078577 AAATGCTAAGTAGTTAC
1 AAATGCTAAGTAGTTAC
72078594 AAATGCTAAGTAGTTAC
1 AAATGCTAAGTAGTTAC
72078611 A
1 A
72078612 CTTTGATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (17 bp):
AAATGCTAAGTAGTTAC
Found at i:72082293 original size:16 final size:16
Alignment explanation
Indices: 72082272--72082306 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
72082262 AGAGAGGGAG
72082272 TAAACATAAAGCTTAA
1 TAAACATAAAGCTTAA
72082288 TAAACATAAAGCTTAA
1 TAAACATAAAGCTTAA
72082304 TAA
1 TAA
72082307 GCTTGCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (16 bp):
TAAACATAAAGCTTAA
Found at i:72082714 original size:48 final size:49
Alignment explanation
Indices: 72082662--72082779 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 49
72082652 TATCCCAAGT
*
72082662 ATGGTCTTAC-TCGGGAT-TAC-AACTCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACAT-GGGATCT-CTAACTCGATGCCAATGCCATGTCCCAAAC
** * *
72082710 ATGGTCTTACATGGGATCTCTTATGTTGATGCCAATGTCATGTCCCAAAC
1 ATGGTCTTACATGGGATCTC-TAACTCGATGCCAATGCCATGTCCCAAAC
72082760 ATGGTCTTACATGGGATCTC
1 ATGGTCTTACATGGGATCTC
72082780 ATATCAACGC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
48 16 0.26
49 2 0.03
50 43 0.70
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (49 bp):
ATGGTCTTACATGGGATCTCTAACTCGATGCCAATGCCATGTCCCAAAC
Found at i:72084892 original size:46 final size:47
Alignment explanation
Indices: 72084787--72085013 Score: 191
Period size: 46 Copynumber: 4.9 Consensus size: 47
72084777 GGGTCATTAT
* *
72084787 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG-G
* * *
72084835 GAGGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTGGAGG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGG
* *
72084880 CGTA-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCCG-CTACGAGAT
1 -G-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAG-G
* * * * * *
72084927 GATAGTCAGTGTAAGATCATGTCTGGGACATGGCATC-GACTTGAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGG
* * *
72084973 TATGAGCCAGTGTAAGACCGTGTCTAGG-CAATGGCATCGGC
1 GA-GAGCCAGTGTAAGACCATGTCTGGGAC-ATGGCATCGGC
72085014 ACCTTACCCT
Statistics
Matches: 149, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
45 4 0.03
46 62 0.42
47 61 0.41
48 22 0.15
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGG
Found at i:72084981 original size:93 final size:93
Alignment explanation
Indices: 72084789--72084990 Score: 232
Period size: 93 Copynumber: 2.2 Consensus size: 93
72084779 GTCATTATGA
* * *
72084789 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGGAGGGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCCGCATCGAGAGGAAGGCTAGTGTAAGACAT
* * *
72084854 GTCTGGGACATGCATCGGCCTGGAGGCGT
65 GTCTGGGACATGCATCGGACTGGAGACAT
* * *
72084883 AAGCCAGTGTAAGACATGTCTGGGACAT-GCATCCGC-TACGAGATGATAGTC-AGTGTAAGATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCCGCAT-CGAGAGGA-AGGCTAGTGTAAGA-C
* *
72084945 ATGTCTGGGACATGGCATC-GACTTGAGATAT
63 ATGTCTGGGACAT-GCATCGGACTGGAGACAT
72084976 GAGCCAGTGTAAGAC
1 GAGCCAGTGTAAGAC
72084991 CGTGTCTAGG
Statistics
Matches: 92, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
91 1 0.01
92 22 0.24
93 51 0.55
94 18 0.20
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.22
Consensus pattern (93 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCCGCATCGAGAGGAAGGCTAGTGTAAGACATG
TCTGGGACATGCATCGGACTGGAGACAT
Found at i:72086956 original size:39 final size:40
Alignment explanation
Indices: 72086839--72087023 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
72086829 GCTACTCGTT
*
72086839 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
72086879 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
72086919 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
72086958 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
72086999 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72087024 CATCATTCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:72095032 original size:79 final size:80
Alignment explanation
Indices: 72094931--72095113 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
72094921 TACTCGTTCA
* *
72094931 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATACCTTC-GGATCTTAACCCGG
* *
72094994 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* * **
72095011 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATACCTTCGGATCTTAACCCGGAT
* *
72095075 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
72095090 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
72095114 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATACCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Done.