Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 227 of 318
Found at i:72095113 original size:40 final size:40
Alignment explanation
Indices: 72094910--72095113 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
72094900 CGGAATTTAA
** *
72094910 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
72094950 CCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72094990 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72095029 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72095069 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72095109 CCGGA
1 CCGGA
72095114 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72095829 original size:22 final size:22
Alignment explanation
Indices: 72095804--72095856 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
72095794 ACCACACATA
*
72095804 AATGGCATACATTTTACTAACT-
1 AATGGCATACATATTA-TAACTC
72095826 AAT-GCATTACATATTATAACTC
1 AATGGCA-TACATATTATAACTC
72095848 AATGCGCAT
1 AATG-GCAT
72095857 CCATCATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 8 0.31
22 14 0.54
23 1 0.04
24 3 0.12
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (22 bp):
AATGGCATACATATTATAACTC
Found at i:72095832 original size:21 final size:22
Alignment explanation
Indices: 72095811--72095852 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
72095801 ATAAATGGCA
*
72095811 TACATTTTACTAACT-AATGCAT
1 TACATATTA-TAACTCAATGCAT
72095833 TACATATTATAACTCAATGC
1 TACATATTATAACTCAATGC
72095853 GCATCCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (22 bp):
TACATATTATAACTCAATGCAT
Found at i:72104881 original size:40 final size:40
Alignment explanation
Indices: 72104782--72105044 Score: 363
Period size: 40 Copynumber: 6.6 Consensus size: 40
72104772 ATTCCCAAGC
* * * *
72104782 CAAATACCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCA
*
72104821 C-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
72104860 CCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
** * *
72104900 CAAATGCCTTCGGGACTTAGCCCAAATACAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
72104940 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
72104980 CAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
72105020 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
72105045 TTATCATCCA
Statistics
Matches: 202, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.07
39 19 0.09
40 168 0.83
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:72113032 original size:40 final size:40
Alignment explanation
Indices: 72112933--72113195 Score: 363
Period size: 40 Copynumber: 6.6 Consensus size: 40
72112923 ATTCCCAAGC
* * * *
72112933 CAAATACCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCA
*
72112972 C-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
72113011 CCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
72113051 CAAATGCCTTCGGGACTTAGCCCAGATACAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
72113091 CAAATGCCTTCGGGACTTAGCCCGGATATACTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
72113131 CAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
72113171 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
72113196 TTATCATCCA
Statistics
Matches: 202, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 15 0.07
39 19 0.09
40 168 0.83
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:72114681 original size:37 final size:37
Alignment explanation
Indices: 72114611--72114755 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
72114601 ACCTTTAGCT
* * * *
72114611 CGGACGTAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGAGTCTTACC
* *
72114648 CAGACAAAATCTCCACACGTAGTCATCGAGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGAGTCTTACC
*
72114685 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGAGTCTTACC
72114722 CGGACATAATCTCCACACGTAGTCATCGAGTCTT
1 CGGACATAATCTCCACACGTAGTCATCGAGTCTT
72114756 TAGAGCTCGG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGAGTCTTACC
Found at i:72114952 original size:47 final size:47
Alignment explanation
Indices: 72114874--72115247 Score: 577
Period size: 47 Copynumber: 7.8 Consensus size: 47
72114864 CCCTTCGGGA
* * * * * *
72114874 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72114921 CCTGTCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72114968 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72115015 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72115062 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72115109 CTTATCACATATATACACTTTCACATTCATCACATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACA-T--T--CATCACATCGGCCATTAGGC
72115161 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72115210 CTTATCACATATATATACACTTTCACATTCATCACATC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATC
72115248 ACATTCATCA
Statistics
Matches: 306, Mismatches: 14, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
47 199 0.65
48 1 0.00
49 58 0.19
50 1 0.00
51 1 0.00
52 28 0.09
53 1 0.00
54 17 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72115037 original size:94 final size:94
Alignment explanation
Indices: 72114874--72115354 Score: 622
Period size: 94 Copynumber: 4.9 Consensus size: 94
72114864 CCCTTCGGGA
* * * * * * * * *
72114874 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72114939 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
72114968 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72115033 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
72115062 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72115127 TTTCACATTCATCACATCACATCGGCCATTAGGC
66 TTTCACA-T--T--CATCACATCGGCCATTAGGC
72115161 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
72115226 ACACTTTCACATTCATCACATCACATTCATCACATCGGCCATTAGGC
62 --A----CAC--T--T----TCACATTCATCACATCGGCCATTAGGC
* *
72115273 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72115337 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
72115355 AGAATCCTAA
Statistics
Matches: 349, Mismatches: 15, Indels: 46
0.85 0.04 0.11
Matches are distributed among these distances:
94 170 0.49
95 1 0.00
97 1 0.00
98 1 0.00
99 28 0.08
101 47 0.13
102 2 0.01
103 6 0.02
105 1 0.00
108 6 0.02
109 3 0.01
110 46 0.13
111 1 0.00
112 28 0.08
113 1 0.00
114 1 0.00
116 1 0.00
117 5 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:72115128 original size:141 final size:141
Alignment explanation
Indices: 72114874--72115354 Score: 622
Period size: 141 Copynumber: 3.2 Consensus size: 141
72114864 CCCTTCGGGA
* * * * * * * *
72114874 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72114939 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
72115004 GGCCATTAGGC
131 GGCCATTAGGC
* *
72115015 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72115080 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA-T--T--CATC
72115145 ACATCGGCCATTAGGC
126 ACATCGGCCATTAGGC
*
72115161 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
72115226 ACACTTTCACATTCATCACATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
62 --A----CAC--T--T----TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72115291 TTTCACATTCATCACATCGGCCATTAGGC
113 TTTCACATTCATCACATCGGCCATTAGGC
* *
72115320 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
72115355 AGAATCCTAA
Statistics
Matches: 302, Mismatches: 14, Indels: 32
0.87 0.04 0.09
Matches are distributed among these distances:
141 109 0.36
142 1 0.00
144 1 0.00
146 28 0.09
148 46 0.15
150 6 0.02
152 1 0.00
156 4 0.01
157 23 0.08
158 1 0.00
159 27 0.09
160 1 0.00
161 1 0.00
163 1 0.00
164 52 0.17
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:72115251 original size:14 final size:14
Alignment explanation
Indices: 72115232--72115261 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72115222 ATATACACTT
72115232 TCACATTCATCACA
1 TCACATTCATCACA
72115246 TCACATTCATCACA
1 TCACATTCATCACA
72115260 TC
1 TC
72115262 GGCCATTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (14 bp):
TCACATTCATCACA
Found at i:72115254 original size:63 final size:61
Alignment explanation
Indices: 72115183--72115308 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 61
72115173 ATATACACTT
72115183 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
72115246 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
72115307 TC
1 TC
72115309 GGCCATTAGG
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 28 0.44
63 35 0.56
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.32
Consensus pattern (61 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
Found at i:72115299 original size:47 final size:47
Alignment explanation
Indices: 72115246--72115354 Score: 175
Period size: 47 Copynumber: 2.3 Consensus size: 47
72115236 ATTCATCACA
72115246 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-T
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA-TGT
* *
72115293 TCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCATGT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATGT
*
72115340 TCACATCCATCACAT
1 TCACATTCATCACAT
72115355 AGAATCCTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.02
47 57 0.98
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATGT
Found at i:72124980 original size:27 final size:27
Alignment explanation
Indices: 72124950--72125013 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
72124940 AGGGCAAAAT
*
72124950 GGTAATTTTACCCCACAACGGTATCTC
1 GGTAATTCTACCCCACAACGGTATCTC
* * ** *
72124977 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAACGGTATCTC
72125004 GGTAATTCTA
1 GGTAATTCTA
72125014 TCCTATAGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCCACAACGGTATCTC
Found at i:72125018 original size:27 final size:27
Alignment explanation
Indices: 72124969--72125148 Score: 218
Period size: 27 Copynumber: 6.7 Consensus size: 27
72124959 ACCCCACAAC
* * *
72124969 GGTATCTCGGTAGTTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
*
72124996 GGTATTTCGGTAATTCTATCCTATAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
* * * * *
72125023 GATATTTCAGTATTTCTACCCTAAAAG
1 GGTATTTCGGTAATTCTACCCTATAGG
* * *
72125050 GGTATTTCGGTAATTCTATCCAACAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
72125077 GGTATTTCGGTAA-TCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
**
72125103 GGTATTTCAATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTATAGG
*
72125130 GGTATTTCGATAATTCTAC
1 GGTATTTCGGTAATTCTAC
72125149 AACTTATGCA
Statistics
Matches: 129, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 21 0.16
27 108 0.84
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTATAGG
Found at i:72125135 original size:80 final size:81
Alignment explanation
Indices: 72124969--72125148 Score: 254
Period size: 80 Copynumber: 2.2 Consensus size: 81
72124959 ACCCCACAAC
* * * * *
72124969 GGTATCTCGGTAGTTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTATAGGGATATTTCAGT
1 GGTATTTCGGTAATTCTACCCAACAGGGGTATTTCGGTAATTCTACCCTATAGGGATATTTCAAT
*
72125034 ATTTCTACCCTAAAAG
66 AATTCTACCCTAAAAG
* *
72125050 GGTATTTCGGTAATTCTATCCAACAGGGGTATTTCGGTAA-TCTACCCTATAGGGGTATTTCAAT
1 GGTATTTCGGTAATTCTACCCAACAGGGGTATTTCGGTAATTCTACCCTATAGGGATATTTCAAT
* *
72125114 AATTCTACCCTATAGG
66 AATTCTACCCTAAAAG
*
72125130 GGTATTTCGATAATTCTAC
1 GGTATTTCGGTAATTCTAC
72125149 AACTTATGCA
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 51 0.59
81 36 0.41
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCAACAGGGGTATTTCGGTAATTCTACCCTATAGGGATATTTCAAT
AATTCTACCCTAAAAG
Found at i:72126207 original size:24 final size:24
Alignment explanation
Indices: 72126175--72126220 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
72126165 CATGTCTTAC
*
72126175 GGCCGTGGCATTTTATTGTAGCAT
1 GGCCATGGCATTTTATTGTAGCAT
72126199 GGCCATGGCATTTTATTGTAGC
1 GGCCATGGCATTTTATTGTAGC
72126221 CCGTGTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.37
Consensus pattern (24 bp):
GGCCATGGCATTTTATTGTAGCAT
Found at i:72133136 original size:13 final size:13
Alignment explanation
Indices: 72133118--72133148 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
72133108 TTATTTTCAA
72133118 GTTTTCAAGTCAT
1 GTTTTCAAGTCAT
*
72133131 GTTTTCAAGTTAT
1 GTTTTCAAGTCAT
72133144 GTTTT
1 GTTTT
72133149 ATACGTGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.10, G:0.16, T:0.55
Consensus pattern (13 bp):
GTTTTCAAGTCAT
Found at i:72135502 original size:39 final size:39
Alignment explanation
Indices: 72135413--72135535 Score: 149
Period size: 39 Copynumber: 3.2 Consensus size: 39
72135403 ATTTAAACCC
* * * * *
72135413 GATATAATACCAGCTCGAAGCCTGCGGGA-CTTTAGCCCG
1 GATATAATTCCAGCACGTAGCCTGC-GGACCTTAAGTCCG
* *
72135452 GACATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCG
1 GATATAATTCCAGCACGTAGCCTGCGGACCTTAAGTCCG
* *
72135491 GTTATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCG
1 GATATAATTCCAGCACGTAGCCTGCGGACCTTAAGTCCG
72135530 GATATA
1 GATATA
72135536 CTGCATCACT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 3 0.04
39 68 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
GATATAATTCCAGCACGTAGCCTGCGGACCTTAAGTCCG
Found at i:72144458 original size:12 final size:12
Alignment explanation
Indices: 72144441--72144496 Score: 69
Period size: 12 Copynumber: 4.7 Consensus size: 12
72144431 TTCTCTCAAA
72144441 CTCTTTTTCATT
1 CTCTTTTTCATT
72144453 CTCTTTTTCAATT
1 CTCTTTTTC-ATT
*
72144466 -TCTTTTTCAAT
1 CTCTTTTTCATT
* *
72144477 CTCATTTTCACT
1 CTCTTTTTCATT
72144489 CTCTTTTT
1 CTCTTTTT
72144497 GTTCTTTTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
11 2 0.05
12 33 0.87
13 3 0.08
ACGTcount: A:0.12, C:0.25, G:0.00, T:0.62
Consensus pattern (12 bp):
CTCTTTTTCATT
Found at i:72144469 original size:24 final size:24
Alignment explanation
Indices: 72144436--72144496 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
72144426 TTTTTTTCTC
* * *
72144436 TCAAACTCTTTTTCATTCTCTTTT
1 TCAATCTCTTTTTCAATCTCATTT
*
72144460 TCAATTTCTTTTTCAATCTCATTT
1 TCAATCTCTTTTTCAATCTCATTT
*
72144484 TCACTCTCTTTTT
1 TCAATCTCTTTTT
72144497 GTTCTTTTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (24 bp):
TCAATCTCTTTTTCAATCTCATTT
Found at i:72144606 original size:15 final size:15
Alignment explanation
Indices: 72144594--72144635 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
72144584 TCTCTTTTAT
72144594 TTCTTTTTCTTTTTC
1 TTCTTTTTCTTTTTC
*
72144609 TTCTTTTGC-TTTTC
1 TTCTTTTTCTTTTTC
*
72144623 -TCGTTTTCTTTTT
1 TTCTTTTTCTTTTT
72144636 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 8 0.35
ACGTcount: A:0.00, C:0.19, G:0.05, T:0.76
Consensus pattern (15 bp):
TTCTTTTTCTTTTTC
Found at i:72145541 original size:11 final size:11
Alignment explanation
Indices: 72145525--72145556 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
72145515 AATTTAACAC
72145525 AATTTTTTTTG
1 AATTTTTTTTG
*
72145536 AATTTTTTTCG
1 AATTTTTTTTG
72145547 AATTTTTTTT
1 AATTTTTTTT
72145557 TGTTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:72146926 original size:40 final size:39
Alignment explanation
Indices: 72146874--72146949 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
72146864 CATTTTGGTT
* * *
72146874 CCAAAACTAATTCTTTCTTTTCACATCTTACTATTTTGAA
1 CCAAAACTAATTCCTTCTTTTC-CACCTTACCATTTTGAA
72146914 CCAAAA-TAAATTCCTTCTTTTCCACCTTACCATTTT
1 CCAAAACT-AATTCCTTCTTTTCCACCTTACCATTTT
72146950 CATACCATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 13 0.41
40 19 0.59
ACGTcount: A:0.29, C:0.26, G:0.01, T:0.43
Consensus pattern (39 bp):
CCAAAACTAATTCCTTCTTTTCCACCTTACCATTTTGAA
Found at i:72153363 original size:40 final size:40
Alignment explanation
Indices: 72153304--72153482 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
72153294 TAGATGATAA
* * *
72153304 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAGAT
* * * * *
72153344 CTGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAGAT
*
72153384 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAGAT
* * *
72153424 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAGAT
* * *
72153464 CCGGGATATGTCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
72153483 TATTCGAGCA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAGAT
Found at i:72153437 original size:80 final size:80
Alignment explanation
Indices: 72153304--72153482 Score: 252
Period size: 80 Copynumber: 2.2 Consensus size: 80
72153294 TAGATGATAA
*
72153304 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGCTCTGAGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGCTCCGAGCTAAGTCCCGAAGGCATTTG
*
72153369 TGCGAGTTACCATAT
66 TACGAGTTACCATAT
* * * *
72153384 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCT-AGTGACTAGCTCCGAGCTAAGTCCCGAAGGCATTT
*
72153448 GTACGAGTTACTATAT
65 GTACGAGTTACCATAT
* * *
72153464 CCGGGATATGTCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
72153483 TATTCGAGCA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 1 0.01
80 87 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGCTCCGAGCTAAGTCCCGAAGGCATTTG
TACGAGTTACCATAT
Found at i:72161666 original size:40 final size:40
Alignment explanation
Indices: 72161611--72161827 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
72161601 TGGATGATAA
* * *
72161611 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
72161651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72161691 CCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
72161730 CCGGGCTAAG-CCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
72161770 CCGGGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
72161810 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72161828 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 50 0.32
40 103 0.66
41 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72161747 original size:79 final size:79
Alignment explanation
Indices: 72161611--72161787 Score: 284
Period size: 79 Copynumber: 2.2 Consensus size: 79
72161601 TGGATGATAA
*
72161611 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAA-GCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
72161676 TGCGAGTTACCATAT
65 TGCGAGTTACCATAT
* *
72161691 CCGGGCTAAGTCCCGAAGCATTTGTGCGAGTTACTAGTTCCGGGCTAAG-CCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCC-CGAAGGCATTTG
*
72161755 TGCGAGTTACTATAT
65 TGCGAGTTACCATAT
*
72161770 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
72161788 GTATTCGAGT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
78 2 0.02
79 72 0.79
80 17 0.19
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACCATAT
Found at i:72162678 original size:9 final size:9
Alignment explanation
Indices: 72162664--72162688 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
72162654 AACGAAACGA
72162664 TCATATGAG
1 TCATATGAG
72162673 TCATATGAG
1 TCATATGAG
72162682 TCATATG
1 TCATATG
72162689 TTAAGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (9 bp):
TCATATGAG
Found at i:72188314 original size:27 final size:27
Alignment explanation
Indices: 72188284--72188461 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72188274 ATATTGAGTC
* * * *
72188284 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72188311 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72188338 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72188366 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72188393 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72188420 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72188447 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72188462 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72188423 original size:82 final size:81
Alignment explanation
Indices: 72188305--72188460 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72188295 TGCTATATAA
* *
72188305 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72188370 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72188387 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72188451 CACTTAGTGC
65 CACTTAGTGC
72188461 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72190858 original size:40 final size:40
Alignment explanation
Indices: 72190803--72191006 Score: 279
Period size: 40 Copynumber: 5.1 Consensus size: 40
72190793 TGGATGATAA
* * *
72190803 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
72190843 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72190883 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
72190923 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
72190963 CCGGGCTATGTCCCAAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
72191003 CCGG
1 CCGG
72191007 TTAAATCCTG
Statistics
Matches: 150, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 4 0.03
40 145 0.97
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72193087 original size:16 final size:16
Alignment explanation
Indices: 72193066--72193151 Score: 136
Period size: 16 Copynumber: 5.4 Consensus size: 16
72193056 TTCGGTTCAA
* *
72193066 TGTAATGGAATAGGGC
1 TGTAATTGAATAGAGC
*
72193082 TGTAATTGAATATAGC
1 TGTAATTGAATAGAGC
72193098 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
*
72193114 TGTAATTGAATAAAGC
1 TGTAATTGAATAGAGC
72193130 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGC
72193146 TGTAAT
1 TGTAAT
72193152 CAGTAATTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 64 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (16 bp):
TGTAATTGAATAGAGC
Found at i:72193354 original size:26 final size:25
Alignment explanation
Indices: 72193307--72193357 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
72193297 ATGATTATTG
*
72193307 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
*
72193332 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
72193358 ATAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:72194736 original size:28 final size:28
Alignment explanation
Indices: 72194704--72194761 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
72194694 TCGTTTAACC
72194704 TAAAACTGAATAAACCCGAACATATACA
1 TAAAACTGAATAAACCCGAACATATACA
*
72194732 TAAAACTGAATTAACCCGAACATATACA
1 TAAAACTGAATAAACCCGAACATATACA
72194760 TA
1 TA
72194762 CATGTAGACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (28 bp):
TAAAACTGAATAAACCCGAACATATACA
Found at i:72196668 original size:13 final size:13
Alignment explanation
Indices: 72196650--72196674 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72196640 TTTACATTTT
72196650 TAAATTTTTTATA
1 TAAATTTTTTATA
72196663 TAAATTTTTTAT
1 TAAATTTTTTAT
72196675 TTTGAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TAAATTTTTTATA
Found at i:72197086 original size:18 final size:18
Alignment explanation
Indices: 72197063--72197100 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
72197053 AATATATACT
72197063 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
72197081 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
72197099 AA
1 AA
72197101 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:72197093 original size:13 final size:13
Alignment explanation
Indices: 72197077--72197101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72197067 CAAGTACCCA
72197077 ACCCAACCCAATT
1 ACCCAACCCAATT
72197090 ACCCAACCCAAT
1 ACCCAACCCAAT
72197102 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:72197139 original size:5 final size:6
Alignment explanation
Indices: 72197126--72197166 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
72197116 ATAATTTAAT
*
72197126 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
72197167 CATATAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:72197199 original size:9 final size:9
Alignment explanation
Indices: 72197185--72197243 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
72197175 TTTATACAAA
*
72197185 TAATTCAGT
1 TAATTCGGT
*
72197194 TAATTCGAT
1 TAATTCGGT
* *
72197203 TAATTTGGG
1 TAATTCGGT
*
72197212 TAATTCGGG
1 TAATTCGGT
**
72197221 TAATTCAAT
1 TAATTCGGT
72197230 TAATTCGGT
1 TAATTCGGT
72197239 TAATT
1 TAATT
72197244 TTATACTTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:72197224 original size:27 final size:27
Alignment explanation
Indices: 72197185--72197243 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
72197175 TTTATACAAA
* * *
72197185 TAATTCAGTTAATTCGATTAATTTGGG
1 TAATTCAGGTAATTCAATTAATTCGGG
* *
72197212 TAATTCGGGTAATTCAATTAATTCGGT
1 TAATTCAGGTAATTCAATTAATTCGGG
72197239 TAATT
1 TAATT
72197244 TTATACTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (27 bp):
TAATTCAGGTAATTCAATTAATTCGGG
Found at i:72198035 original size:27 final size:25
Alignment explanation
Indices: 72197997--72198053 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
72197987 AGTTTCATGT
* *
72197997 ATATAATTACATAAAATTAAAGTTC
1 ATATAATTACATAAAATCAAAATTC
*
72198022 ATATAATTGCACATTAAATCAAAATTC
1 ATATAATT--ACATAAAATCAAAATTC
72198049 ATATA
1 ATATA
72198054 TAATTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 8 0.30
27 19 0.70
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATAATTACATAAAATCAAAATTC
Found at i:72202148 original size:10 final size:11
Alignment explanation
Indices: 72202083--72202148 Score: 54
Period size: 9 Copynumber: 6.5 Consensus size: 11
72202073 TTAAAAGTTC
*
72202083 TAAAAATAATA
1 TAAAAATTATA
*
72202094 TATAAA--ATA
1 TAAAAATTATA
72202103 TAAAAA-TAT-
1 TAAAAATTATA
72202112 TAAAAATT-TA
1 TAAAAATTATA
72202122 TAAAAATTATAA
1 TAAAAATTAT-A
*
72202134 AAAAAATTAT-
1 TAAAAATTATA
72202144 TAAAA
1 TAAAA
72202149 TAGTCTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 15 0.33
10 15 0.33
11 6 0.13
12 10 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:72202621 original size:16 final size:16
Alignment explanation
Indices: 72202598--72202639 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
72202588 CATATTTTTA
72202598 TTATAATTTTTTAT-T
1 TTATAATTTTTTATCT
*
72202613 TTAATAA-TTTATATCT
1 TT-ATAATTTTTTATCT
72202629 TTATAATTTTT
1 TTATAATTTTT
72202640 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATAATTTTTTATCT
Found at i:72205500 original size:21 final size:21
Alignment explanation
Indices: 72205476--72205516 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72205466 GGTCGTGTGG
*
72205476 CTACTACACACGCCCGTGTAA
1 CTACTACACACGCCCATGTAA
**
72205497 CTACTTTACACGCCCATGTA
1 CTACTACACACGCCCATGTA
72205517 TGCTAACCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.37, G:0.12, T:0.24
Consensus pattern (21 bp):
CTACTACACACGCCCATGTAA
Found at i:72211451 original size:9 final size:9
Alignment explanation
Indices: 72211436--72211482 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
72211426 CAAAATAAAT
72211436 ATTAATTTA
1 ATTAATTTA
*
72211445 GTTAATTTA
1 ATTAATTTA
72211454 ATTAA-TTA
1 ATTAATTTA
*
72211462 ATTAAATTA
1 ATTAATTTA
* *
72211471 ACTAAATTA
1 ATTAATTTA
72211480 ATT
1 ATT
72211483 TCTCAATTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
8 8 0.24
9 25 0.76
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (9 bp):
ATTAATTTA
Found at i:72211499 original size:16 final size:18
Alignment explanation
Indices: 72211473--72211505 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72211463 TTAAATTAAC
72211473 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
72211490 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
72211506 CTCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:72212344 original size:13 final size:13
Alignment explanation
Indices: 72212326--72212361 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
72212316 ACATCAGAGT
*
72212326 ATACAAGTCACGC
1 ATACAAGTCACAC
72212339 ATACAAGTCACAC
1 ATACAAGTCACAC
72212352 ATACATAGTC
1 ATACA-AGTC
72212362 TATCATCCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.42, C:0.28, G:0.11, T:0.19
Consensus pattern (13 bp):
ATACAAGTCACAC
Found at i:72215481 original size:9 final size:9
Alignment explanation
Indices: 72215467--72215497 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
72215457 CGAAAATTTC
72215467 TTTTGGTTT
1 TTTTGGTTT
72215476 TTTTGGTTT
1 TTTTGGTTT
72215485 TTTTGGTTT
1 TTTTGGTTT
72215494 TTTT
1 TTTT
72215498 AGGGTTTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (9 bp):
TTTTGGTTT
Found at i:72220921 original size:40 final size:40
Alignment explanation
Indices: 72220862--72221083 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
72220852 TATTCGGATG
* *
72220862 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72220902 A-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
72220942 ATATCCGGGCTAAGTCCCTAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72220982 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72221022 ATAACCGGGCTAAGTCCCGAAGACATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
72221062 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
72221084 TACTTGGTGT
Statistics
Matches: 165, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72232137 original size:46 final size:49
Alignment explanation
Indices: 72232068--72232201 Score: 141
Period size: 53 Copynumber: 2.7 Consensus size: 49
72232058 TACATCACAC
* *
72232068 ACCGAAGCCATAGCCCTA-CTATGGTCTTATACGGATCACA-TAT-CA-T
1 ACCGATGCCATAGCCC-AGATATGGTCTTATACGGATCACATTATACATT
* * *
72232114 ACCGATGTCATATCCCAGATATGGTCTTACACGGAATCACATTATCACATTGT
1 ACCGATGCCATAGCCCAGATATGGTCTTATACGG-ATCACATTAT-ACA-T-T
*
72232167 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGA
1 ACCGATGCCATAGCCCAGATATGGTCTTATACGGA
72232202 AGTACATATC
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 27 0.38
47 6 0.08
48 3 0.04
50 2 0.03
52 1 0.01
53 31 0.44
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
ACCGATGCCATAGCCCAGATATGGTCTTATACGGATCACATTATACATT
Found at i:72232184 original size:53 final size:52
Alignment explanation
Indices: 72232113--72232215 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 52
72232103 TCACATATCA
* *
72232113 TACCGATGTCATATCCCAGATATGGTCTTACACGGAA-TCACATTATCACATTG
1 TACCGATGCCATAGCCCAGATATGGTCTTACACGGAAGT-ACA-TATCACATTG
* *
72232166 TACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGTACATATCACAT
1 TACCGATGCCATAGCCCAGATATGGTCTTACACGGAAGTACATATCACAT
72232216 CTTTTCCGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
52 8 0.18
53 36 0.80
54 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (52 bp):
TACCGATGCCATAGCCCAGATATGGTCTTACACGGAAGTACATATCACATTG
Found at i:72242456 original size:21 final size:20
Alignment explanation
Indices: 72242430--72242496 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 20
72242420 TTTTTATTTA
72242430 TTAAAATATATTTTCTTGAAT
1 TTAAAATATATTTT-TTGAAT
*
72242451 TTAAAAGTATATTTTAT-ATAT
1 TTAAAA-TATATTTTTTGA-AT
72242472 TCTAAAATATATTTTTTAGAAT
1 T-TAAAATATATTTTTT-GAAT
72242494 TTA
1 TTA
72242497 TATGAATATG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 1 0.03
21 21 0.54
22 16 0.41
23 1 0.03
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.52
Consensus pattern (20 bp):
TTAAAATATATTTTTTGAAT
Found at i:72242487 original size:22 final size:21
Alignment explanation
Indices: 72242417--72242487 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
72242407 TCTACACGTA
*
72242417 ATATTTTTATTTA-TTAAAAT
1 ATATTTTTATATATTTAAAAT
72242437 ATATTTTCT-TGA-ATTTAAAAGT
1 ATATTTT-TAT-ATATTTAAAA-T
72242459 ATA-TTTTATATATTCTAAAAT
1 ATATTTTTATATATT-TAAAAT
72242480 ATATTTTT
1 ATATTTTT
72242488 TAGAATTTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
20 11 0.26
21 18 0.43
22 13 0.31
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (21 bp):
ATATTTTTATATATTTAAAAT
Found at i:72242758 original size:15 final size:15
Alignment explanation
Indices: 72242748--72242776 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72242738 TGAAAAAAAT
72242748 AAAATAAAAAATAAA
1 AAAATAAAAAATAAA
72242763 AAAAT-AAAAATAAA
1 AAAATAAAAAATAAA
72242777 GAACACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAATAAAAAATAAA
Found at i:72250752 original size:59 final size:58
Alignment explanation
Indices: 72250618--72250779 Score: 171
Period size: 60 Copynumber: 2.7 Consensus size: 58
72250608 ATTTGGTACT
* * * * *
72250618 TAAATTTGACATTTTTTCTTAATTTGGTATTTAAAACTTTTTTTGCCCAATTCAATACC
1 TAAACTTGACACTTTTTCCTAATTTGGTACTT-AAACTTTTTTTGCCCAATTCAACACC
* * ***
72250677 TGAACTTGATACTTTTTCCTAATTTGGTACTTAAACTTTTTTTGAGCCCAATTTGGCACC
1 TAAACTTGACACTTTTTCCTAATTTGGTACTTAAACTTTTTTT--GCCCAATTCAACACC
* * * *
72250737 TAAACTTGGCATTTTTTCCTAATTTGGTACTTGAGCTTTTTTT
1 TAAACTTGACACTTTTTCCTAATTTGGTACTTAAACTTTTTTT
72250780 TTAGGTTCAA
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
58 11 0.13
59 26 0.31
60 48 0.56
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (58 bp):
TAAACTTGACACTTTTTCCTAATTTGGTACTTAAACTTTTTTTGCCCAATTCAACACC
Found at i:72254179 original size:5 final size:5
Alignment explanation
Indices: 72254163--72254198 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
72254153 TTAAATATAC
72254163 ATTAT A-TAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
72254199 AATAAAACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:72254732 original size:5 final size:5
Alignment explanation
Indices: 72254722--72254755 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
72254712 TCAATATGAA
72254722 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTG
1 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT ATTG
72254756 ATAAATTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (5 bp):
ATTGT
Found at i:72255198 original size:22 final size:22
Alignment explanation
Indices: 72255173--72255260 Score: 70
Period size: 22 Copynumber: 3.9 Consensus size: 22
72255163 TTCTCTGGTA
* *
72255173 ATTAGCACGTTAGTGCTCTCCGATT
1 ATTAGCACATTAGTGCTCT-C--TG
*
72255198 ATTAGCACATTAGTGCTCTTTG
1 ATTAGCACATTAGTGCTCTCTG
* * *
72255220 TTTAGCACATTCGTGCTTTCTG
1 ATTAGCACATTAGTGCTCTCTG
*
72255242 -TATAGCACTTTAGTGCTCT
1 AT-TAGCACATTAGTGCTCT
72255261 TTGTTTAATA
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
21 1 0.02
22 33 0.63
25 18 0.35
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.41
Consensus pattern (22 bp):
ATTAGCACATTAGTGCTCTCTG
Found at i:72255391 original size:31 final size:31
Alignment explanation
Indices: 72255349--72255419 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
72255339 AAGAATATGA
72255349 GATAGTAAATTGAAAATAGAATATAAAATAT
1 GATAGTAAATTGAAAATAGAATATAAAATAT
* * * *
72255380 GATAGTGAATTGAAACTAGAATGTGAAATAT
1 GATAGTAAATTGAAAATAGAATATAAAATAT
*
72255411 G-TTGTAAAT
1 GATAGTAAAT
72255420 ACATGGAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.49, C:0.01, G:0.18, T:0.31
Consensus pattern (31 bp):
GATAGTAAATTGAAAATAGAATATAAAATAT
Found at i:72256624 original size:21 final size:20
Alignment explanation
Indices: 72256596--72256637 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
72256586 AGTGAAAACG
*
72256596 AAAAAAATAATTAAATTATC
1 AAAAAAATAAATAAATTATC
*
72256616 AAAATAAATAAATAATTTATC
1 AAAA-AAATAAATAAATTATC
72256637 A
1 A
72256638 TTCATTACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAAAATAAATAAATTATC
Found at i:72257345 original size:5 final size:5
Alignment explanation
Indices: 72257335--72257361 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
72257325 CTAGACTACG
72257335 GGTAA GGTAA GGTAA GGTAA GGTAA GG
1 GGTAA GGTAA GGTAA GGTAA GGTAA GG
72257362 GTAGTTAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.44, T:0.19
Consensus pattern (5 bp):
GGTAA
Found at i:72262968 original size:10 final size:10
Alignment explanation
Indices: 72262941--72262980 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
72262931 TTAAATTCTA
72262941 AAAGATAAAT
1 AAAGATAAAT
72262951 ACAA-ATAAAT
1 A-AAGATAAAT
*
72262961 AAAGATAATT
1 AAAGATAAAT
72262971 AAAGATAAAT
1 AAAGATAAAT
72262981 GAAATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:72263023 original size:13 final size:12
Alignment explanation
Indices: 72263007--72263036 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
72262997 ATTAAATCTA
72263007 AATAATTATCCTT
1 AATAATTATCC-T
72263020 AATAATTATCCT
1 AATAATTATCCT
72263032 AATAA
1 AATAA
72263037 CATTAAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAATTATCCT
Found at i:72274296 original size:21 final size:19
Alignment explanation
Indices: 72274272--72274323 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
72274262 TAGAGTATGT
*
72274272 TAATTGATATTGAATATTGAA
1 TAATTCATATTG-AT-TTGAA
*
72274293 TAATTCATGTTGATTTGAA
1 TAATTCATATTGATTTGAA
72274312 TAATTTCATATT
1 TAA-TTCATATT
72274324 AATGTTAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 8 0.30
20 9 0.33
21 10 0.37
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (19 bp):
TAATTCATATTGATTTGAA
Found at i:72277386 original size:68 final size:67
Alignment explanation
Indices: 72277340--72277534 Score: 275
Period size: 68 Copynumber: 2.8 Consensus size: 67
72277330 ATACTATATA
*
72277340 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
72277405 AAT
65 AAT
72277408 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
72277473 AAT
65 AAT
* * * * *
72277476 GTAGCTAGGTCGCATGAGTGATTCCAAGTGAAGGA-CACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGTGTGA-TAC-AG-GATGTATC-CCATGTAGACAAGAGAGCTACG
72277535 AGATAAATCG
Statistics
Matches: 117, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 86 0.74
69 2 0.02
70 3 0.03
71 26 0.22
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:72277571 original size:66 final size:67
Alignment explanation
Indices: 72277374--72277571 Score: 201
Period size: 68 Copynumber: 2.9 Consensus size: 67
72277364 GGGATGTATC
* *
72277374 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C-AG-GA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
72277436 TGTATC-
62 AGGA-CA
*
72277442 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
72277507 AGGACA
62 AGGACA
* *
72277513 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
72277572 TTCACCATGT
Statistics
Matches: 117, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 55 0.47
69 1 0.01
70 3 0.03
71 25 0.21
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:72279630 original size:50 final size:44
Alignment explanation
Indices: 72279534--72279625 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
72279524 TGTTCAAGGA
72279534 TACTTCGACCTTGAGTTGATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCGACCTTGAGTTGATGAGGCACTATAAGTGTCGTACTGT
* * *
72279578 TACTTCGA-CTTCGAGTTGATGAGGCACCATATGTGTCGTACTGC
1 TACTTCGACCTT-GAGTTGATGAGGCACTATAAGTGTCGTACTGT
72279622 TACT
1 TACT
72279626 GTTACATTGG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 3 0.07
44 41 0.93
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (44 bp):
TACTTCGACCTTGAGTTGATGAGGCACTATAAGTGTCGTACTGT
Found at i:72280471 original size:38 final size:38
Alignment explanation
Indices: 72280429--72280503 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
72280419 ATTTGATAAT
72280429 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCAC
1 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCAC
72280467 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCA
1 GTATGTGAAATACTTAAAAAGATTCATCATATAAGCA
72280504 TGTAAAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.29
Consensus pattern (38 bp):
GTATGTGAAATACTTAAAAAGATTCATCATATAAGCAC
Found at i:72282566 original size:17 final size:18
Alignment explanation
Indices: 72282535--72282568 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72282525 ATGACAAATC
72282535 ATATCATATCATATATAT
1 ATATCATATCATATATAT
*
72282553 ATAT-ATATCTTATATA
1 ATATCATATCATATATA
72282569 GTTATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATCATATCATATATAT
Found at i:72282625 original size:14 final size:16
Alignment explanation
Indices: 72282596--72282632 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
72282586 TACATAAATT
72282596 TTATA-TAATCATATA
1 TTATATTAATCATATA
72282611 TTA-ATTAAT-ATATA
1 TTATATTAATCATATA
72282625 TTATATTA
1 TTATATTA
72282633 TTTTCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
TTATATTAATCATATA
Found at i:72284227 original size:10 final size:11
Alignment explanation
Indices: 72284206--72284238 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
72284196 TTAATGTATT
*
72284206 ATATTTAAAAA
1 ATATATAAAAA
72284217 ATATA-AAAAA
1 ATATATAAAAA
72284227 ATATATAAAAA
1 ATATATAAAAA
72284238 A
1 A
72284239 ATTTAATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
ATATATAAAAA
Found at i:72284232 original size:12 final size:12
Alignment explanation
Indices: 72284212--72284240 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
72284202 TATTATATTT
72284212 AAAAA-ATATAA
1 AAAAATATATAA
72284223 AAAAATATATAA
1 AAAAATATATAA
72284235 AAAAAT
1 AAAAAT
72284241 TTAATATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATATATAA
Found at i:72286222 original size:57 final size:57
Alignment explanation
Indices: 72286147--72286261 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
72286137 CTTCAAAAGG
*
72286147 GGGCGTCACAACTTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
1 GGGCGTCACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
*
72286204 GGGCGTTACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
1 GGGCGTCACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
72286261 G
1 G
72286262 TTAGAAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (57 bp):
GGGCGTCACAAATTTAAAGGCTAAATATTTTCCTAATAGTGAATTTTTGCATGCAGA
Found at i:72288685 original size:16 final size:15
Alignment explanation
Indices: 72288658--72288688 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
72288648 ATCATTTTTC
72288658 TTAAATTTATTTATT
1 TTAAATTTATTTATT
72288673 TTAAATATTATTTATT
1 TTAAAT-TTATTTATT
72288689 ATTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAAATTTATTTATT
Found at i:72288764 original size:5 final size:5
Alignment explanation
Indices: 72288746--72288889 Score: 76
Period size: 5 Copynumber: 30.0 Consensus size: 5
72288736 TATTTTCAAG
*
72288746 TATAT T-TA- TATAT TATAT TAT-T TATTAGT ATATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TA-T -TATAT TATAT TATAT
* * * *
72288791 T-T-T TATA- T-TAT TATAT ATATAT TATAT TATCT TATGT TTTAA TATA-
1 TATAT TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATAT
* * * * *
72288837 CAT-T ATATAT TATAT TATAT TATTT TATTT TATAT TTTAT CATA- TAT-T
1 TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
72288885 TATAT
1 TATAT
72288890 CTTATTACAT
Statistics
Matches: 107, Mismatches: 16, Indels: 32
0.69 0.10 0.21
Matches are distributed among these distances:
3 5 0.05
4 18 0.17
5 72 0.67
6 7 0.07
7 3 0.03
8 2 0.02
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:72288768 original size:52 final size:54
Alignment explanation
Indices: 72288711--72288825 Score: 132
Period size: 52 Copynumber: 2.1 Consensus size: 54
72288701 ATATAAAAAT
*
72288711 TTATTTATCT-GTATATTATT-TTTGT-TATTTTCA-AGTA-TATTTATATATTATA
1 TTATTTAT-TAGTATA-TATTATTT-TATATTTTCATAGTATTATATATATATTATA
* *
72288763 TTATTTATTAGTATATATTATTTTATATTTTTATATTATTATATATATATTATA
1 TTATTTATTAGTATATATTATTTTATATTTTCATAGTATTATATATATATTATA
72288817 TTATCTTAT
1 TTAT-TTAT
72288826 GTTTTAATAT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
51 6 0.11
52 23 0.43
53 3 0.06
54 18 0.33
55 4 0.07
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (54 bp):
TTATTTATTAGTATATATTATTTTATATTTTCATAGTATTATATATATATTATA
Found at i:72288771 original size:32 final size:30
Alignment explanation
Indices: 72288746--72288864 Score: 99
Period size: 34 Copynumber: 4.0 Consensus size: 30
72288736 TATTTTCAAG
*
72288746 TATATTTATATATTATATTAT-TTATTAGTA
1 TATATTTATATATTATATTATATTATT-TTA
*
72288776 TATA-TTAT-T-TTATATT-T-TTATATTA
1 TATATTTATATATTATATTATATTATTTTA
* *
72288801 T-TATATATATATTATATTATCTTATGTTTTAA
1 TATATTTATATATTATATTATATTA--TTTT-A
*
72288833 TATACATTATATATTATATTATATTATTTTA
1 TATA-TTTATATATTATATTATATTATTTTA
72288864 T
1 T
72288865 TTTATATTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
24 2 0.03
25 6 0.08
26 6 0.08
27 14 0.19
28 2 0.03
29 7 0.10
30 4 0.06
31 5 0.07
32 6 0.08
33 2 0.03
34 18 0.25
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (30 bp):
TATATTTATATATTATATTATATTATTTTA
Found at i:72288780 original size:22 final size:22
Alignment explanation
Indices: 72288748--72288872 Score: 93
Period size: 22 Copynumber: 5.8 Consensus size: 22
72288738 TTTTCAAGTA
72288748 TATT-TATATATTATATTAT-T
1 TATTATATATATTATATTATAT
*
72288768 TATTAGTATATATTATTTTATAT
1 TATTA-TATATATTATATTATAT
*
72288791 TTTTATAT-TATTATA-TATA-
1 TATTATATATATTATATTATAT
* * * *
72288810 TATTATATTATCTTATGTTTTAA
1 TATTATA-TATATTATATTATAT
*
72288833 TATACATTATATATTATATTATAT
1 TAT-TA-TATATATTATATTATAT
*
72288857 TATT-T-TATTTTATATT
1 TATTATATATATTATATT
72288873 TTATCATATA
Statistics
Matches: 82, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
19 6 0.07
20 19 0.23
21 12 0.15
22 20 0.24
23 8 0.10
24 15 0.18
25 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTATATATATTATATTATAT
Found at i:72288812 original size:34 final size:34
Alignment explanation
Indices: 72288750--72288883 Score: 96
Period size: 37 Copynumber: 3.8 Consensus size: 34
72288740 TTCAAGTATA
*
72288750 TTTATA-TATTATATTATT-TATTAGTATATATTAT
1 TTTATATTTTTATATTATTATA-TA-TATATATTAT
72288784 TTTATATTTTTATATTATTATATATATATTATATTAT
1 TTTATATTTTTATATTA-T-TATATATA-TATATTAT
* * * *
72288821 CTTATGTTTTAATATACATTATATAT-TATATTAT
1 TTTATATTTTTATAT-TATTATATATATATATTAT
* *
72288855 ATTATTTTATTTTATATT-TTATCATATAT
1 TTTA-TAT-TTTTATATTATTAT-ATATAT
72288884 TTATATCTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
34 21 0.26
35 15 0.19
36 18 0.22
37 24 0.30
38 3 0.04
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (34 bp):
TTTATATTTTTATATTATTATATATATATATTAT
Found at i:72288881 original size:25 final size:25
Alignment explanation
Indices: 72288799--72288894 Score: 64
Period size: 24 Copynumber: 4.0 Consensus size: 25
72288789 ATTTTTATAT
72288799 TATTATAT-ATATATTATATTATCTTA
1 TATTATATCATATATT-TA-TATCTTA
* * * *
72288825 TGTT-T-TAATATACATTATATATTA
1 TATTATATCATATA-TTTATATCTTA
72288849 TATTATAT--TAT-TTTAT-T-TTA
1 TATTATATCATATATTTATATCTTA
*
72288869 TATTTTATCATATATTTATATCTTA
1 TATTATATCATATATTTATATCTTA
72288894 T
1 T
72288895 TACATATTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 19
0.69 0.08 0.24
Matches are distributed among these distances:
20 10 0.18
21 1 0.02
22 7 0.13
23 5 0.09
24 14 0.25
25 13 0.24
26 5 0.09
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (25 bp):
TATTATATCATATATTTATATCTTA
Found at i:72289063 original size:19 final size:20
Alignment explanation
Indices: 72289033--72289077 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
72289023 TTTGTTATTT
*
72289033 TATTATATATA-TATTTATAC
1 TATTATATATATTA-TTACAC
72289053 TATTA-ATATATTATTACAC
1 TATTATATATATTATTACAC
72289072 TATTAT
1 TATTAT
72289078 GAAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATATATATTATTACAC
Found at i:72289119 original size:22 final size:23
Alignment explanation
Indices: 72289093--72289143 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
72289083 TTATAAATTA
* *
72289093 TTATTAAGCAT-TA-TATTTATG
1 TTATTAAACATGTAGTATGTATG
72289114 TGTATTAAACATGTAGTATGTATG
1 T-TATTAAACATGTAGTATGTATG
72289138 TTATTA
1 TTATTA
72289144 TAAAGTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 7 0.28
24 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TTATTAAACATGTAGTATGTATG
Found at i:72294920 original size:6 final size:6
Alignment explanation
Indices: 72294909--72294940 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
72294899 GATCACCCAC
72294909 TGTGAG TGTGAG TGTGAG TGTGAG TGTGAG TG
1 TGTGAG TGTGAG TGTGAG TGTGAG TGTGAG TG
72294941 AGGGAATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.50, T:0.34
Consensus pattern (6 bp):
TGTGAG
Found at i:72295579 original size:199 final size:198
Alignment explanation
Indices: 72295240--72295636 Score: 785
Period size: 199 Copynumber: 2.0 Consensus size: 198
72295230 TTTTCTTTTC
72295240 CTTTTAATTAAAGCTGATTTTTTATCTGGGTTTTGTTATTTTGTCTCACTAACATGGCTTTCAAG
1 CTTTTAATTAAAGCTGATTTTTTATCTGGGTTTTGTTATTTTGTCTCACTAACATGGCTTTCAAG
72295305 ACTTTCTTTTATGATGTCTTACGATATTAGCGTTCTTGATGTGTAATGGCCTCTAATCATTGTTA
66 ACTTTCTTTTATGATGTCTTACGATATTAGCGTTCTTGATGTGTAATGGCCTCTAATCATTGTTA
72295370 TGATGAGGTTAGAGGTTTTAAAAATTATGATATTGTTGTCTTTGAATCCTTGGTGACATGTATGA
131 TGATGAGGTTAGAGGTTTTAAAAATTATGATATTGTTGTCTTTGAATCCTTGGTGACATGTATGA
72295435 TGT
196 TGT
72295438 CTTTTAATTAAAGCTGATTTTTTATCTGGGTTTTTGTTATTTTGTCTCACTAACATGGCTTTCAA
1 CTTTTAATTAAAGCTGATTTTTTATCTGGG-TTTTGTTATTTTGTCTCACTAACATGGCTTTCAA
72295503 GACTTTCTTTTATGATGTCTTACGATATTAGCGTTCTTGATGTGTAATGGCCTCTAATCATTGTT
65 GACTTTCTTTTATGATGTCTTACGATATTAGCGTTCTTGATGTGTAATGGCCTCTAATCATTGTT
72295568 ATGATGAGGTTAGAGGTTTTAAAAATTATGATATTGTTGTCTTTGAATCCTTGGTGACATGTATG
130 ATGATGAGGTTAGAGGTTTTAAAAATTATGATATTGTTGTCTTTGAATCCTTGGTGACATGTATG
72295633 ATGT
195 ATGT
72295637 TTAAGTATGA
Statistics
Matches: 198, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
198 30 0.15
199 168 0.85
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (198 bp):
CTTTTAATTAAAGCTGATTTTTTATCTGGGTTTTGTTATTTTGTCTCACTAACATGGCTTTCAAG
ACTTTCTTTTATGATGTCTTACGATATTAGCGTTCTTGATGTGTAATGGCCTCTAATCATTGTTA
TGATGAGGTTAGAGGTTTTAAAAATTATGATATTGTTGTCTTTGAATCCTTGGTGACATGTATGA
TGT
Found at i:72297197 original size:3 final size:3
Alignment explanation
Indices: 72297189--72297219 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
72297179 ACATAATACT
72297189 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
72297220 TTTGTTTGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.32, G:0.35, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:72300940 original size:24 final size:24
Alignment explanation
Indices: 72300908--72300958 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
72300898 TCGTTATGTT
72300908 CGGTAATGCCTCATAACCCTAGTC
1 CGGTAATGCCTCATAACCCTAGTC
*
72300932 CGGTAATGCCTCATAACTCTAGTC
1 CGGTAATGCCTCATAACCCTAGTC
72300956 CGG
1 CGG
72300959 CGACGGATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (24 bp):
CGGTAATGCCTCATAACCCTAGTC
Found at i:72301041 original size:21 final size:21
Alignment explanation
Indices: 72300986--72301046 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
72300976 GTGTGTTACA
**
72300986 AAAACAATCAATTGAAACA-AC
1 AAAACAATCAATTGAAA-AGTG
*
72301007 AAAACAATCAATTGTAAAGTG
1 AAAACAATCAATTGAAAAGTG
**
72301028 AAAACAATTGATTGAAAAG
1 AAAACAATCAATTGAAAAG
72301047 AATCATTTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 1 0.03
21 32 0.97
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.20
Consensus pattern (21 bp):
AAAACAATCAATTGAAAAGTG
Found at i:72305411 original size:49 final size:50
Alignment explanation
Indices: 72305358--72305484 Score: 139
Period size: 50 Copynumber: 2.6 Consensus size: 50
72305348 CTGGTATGTA
* * **
72305358 TAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACG
* * * * *
72305407 TAGTAGCTTGCACTTGGTACTACATACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACG
* * *
72305457 TAGTATCCTACGCTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
72305485 TGATTGAAGT
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
49 27 0.44
50 35 0.56
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTAATACACG
Found at i:72307015 original size:27 final size:26
Alignment explanation
Indices: 72306955--72307015 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 26
72306945 TTTTACCCTA
*
72306955 CAGGGGTATTTCGATAATTTTACAAC
1 CAGGGGTATTTAGATAATTTTACAAC
* *
72306981 CTGAGGGTATTTTAG-TAATTTTACAAAT
1 CAG-GGGTA-TTTAGATAATTTTAC-AAC
72307009 CAGGGGT
1 CAGGGGT
72307016 CTTAACGACC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
26 2 0.07
27 18 0.64
28 8 0.29
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (26 bp):
CAGGGGTATTTAGATAATTTTACAAC
Found at i:72309495 original size:50 final size:50
Alignment explanation
Indices: 72309375--72309482 Score: 207
Period size: 50 Copynumber: 2.2 Consensus size: 50
72309365 GGGGGGTTAC
72309375 AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
*
72309425 AGTACTACACATGCGACCTAACTATTTGGTACACGTAGTAGCCTGCACTT
1 AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
72309475 AGTACTAC
1 AGTACTAC
72309483 GCACGTGACC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (50 bp):
AGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
Found at i:72312505 original size:96 final size:96
Alignment explanation
Indices: 72312355--72312532 Score: 284
Period size: 96 Copynumber: 1.9 Consensus size: 96
72312345 ACTATCGATA
* * * *
72312355 GGAATGATCGAGCAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAAG
1 GGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCGAGCAAGGGAAAAGCCGAAGCCAAG
72312420 AGGGCAAAGAGGAGCAAGTCTGTCATCGAAG
66 AGGGCAAAGAGGAGCAAGTCTGTCATCGAAG
* * *
72312451 GGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCGAGCAAGGGTAAAGCTGAAGCCAAG
1 GGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCGAGCAAGGGAAAAGCCGAAGCCAAG
*
72312516 AGGGCTAAGAGGAGCAA
66 AGGGCAAAGAGGAGCAA
72312533 AAAGAAGTGA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.36, C:0.19, G:0.35, T:0.10
Consensus pattern (96 bp):
GGAACGATCGAGCAGACAAGGAGCCCAAGAAGCTTGGCTCGAGCAAGGGAAAAGCCGAAGCCAAG
AGGGCAAAGAGGAGCAAGTCTGTCATCGAAG
Found at i:72315566 original size:15 final size:15
Alignment explanation
Indices: 72315548--72315587 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
72315538 TCCAAAACGG
*
72315548 AGAAATCCAGA-ATAT
1 AGAAATCCA-ACATAA
72315563 AGAAATCCAACATAA
1 AGAAATCCAACATAA
72315578 AGAAATCCAA
1 AGAAATCCAA
72315588 AACAAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.15
Consensus pattern (15 bp):
AGAAATCCAACATAA
Found at i:72316174 original size:6 final size:6
Alignment explanation
Indices: 72316163--72316195 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
72316153 ACTCAACTCT
72316163 CATATA CATATA CATATA CATATA CATATA CAT
1 CATATA CATATA CATATA CATATA CATATA CAT
72316196 GTAACATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:72323441 original size:93 final size:93
Alignment explanation
Indices: 72323336--72323507 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
72323326 CGCCCATAAG
* * * *
72323336 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAATTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72323401 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72323429 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72323494 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72323508 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72323504 original size:46 final size:46
Alignment explanation
Indices: 72323329--72323504 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
72323319 TGTAACCCGC
* * *
72323329 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
72323375 CCATAAGTGAACTCGGACTCAATTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
72323425 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72323468 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72323505 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72326291 original size:24 final size:24
Alignment explanation
Indices: 72326264--72326309 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
72326254 AGTGCTCGGT
*
72326264 TTAAAGAATTTGCACACACAGTCC
1 TTAAAGAATTCGCACACACAGTCC
* *
72326288 TTAATGCATTCGCACACACAGT
1 TTAAAGAATTCGCACACACAGT
72326310 GCCTATATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (24 bp):
TTAAAGAATTCGCACACACAGTCC
Found at i:72326553 original size:40 final size:40
Alignment explanation
Indices: 72326488--72326688 Score: 348
Period size: 40 Copynumber: 5.0 Consensus size: 40
72326478 GATTACACAT
* * *
72326488 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
*
72326528 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
*
72326568 CACCAGCACGAATGCTCTTCGGGACTTAGCCTGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
*
72326608 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
72326648 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
72326688 C
1 C
72326689 TCTCAATTCT
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
Found at i:72332672 original size:51 final size:50
Alignment explanation
Indices: 72332617--72332785 Score: 166
Period size: 51 Copynumber: 3.6 Consensus size: 50
72332607 ATCTGGTTCG
72332617 CATAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTTGTCGAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACA-GTGATTGAAGTTGTCGAGTACA
* * *
72332668 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CTATCTG-GTACA
1 CATAGTAGCCTGCACTTAGTACTACACA-GTGA-TTGAAGTTGTC-GAGTACA
* *
72332718 CGTAGTAGCCTGCAC----T--T----AGTGATTGAAGTTGTCGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACAGTGATTGAAGTTGTCGAGTACA
72332758 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
72332786 TGCGACCTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 31
0.69 0.07 0.23
Matches are distributed among these distances:
38 1 0.01
39 7 0.08
40 22 0.24
44 2 0.02
46 2 0.02
50 23 0.25
51 35 0.38
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACAGTGATTGAAGTTGTCGAGTACA
Found at i:72332799 original size:90 final size:90
Alignment explanation
Indices: 72332646--72332827 Score: 337
Period size: 90 Copynumber: 2.0 Consensus size: 90
72332636 TACTACACAC
*
72332646 GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATC
1 GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
72332711 TGGTACACGTAGTAGCCTGCACTTA
66 TGGTACACGTAGTAGCCTGCACTTA
*
72332736 GTGATTGAAGTTGTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
1 GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
*
72332801 TGGTACACGTAGTAGCTTGCACTTA
66 TGGTACACGTAGTAGCCTGCACTTA
72332826 GT
1 GT
72332828 ACTACCTACG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (90 bp):
GTGATTGAAGTTGTCGAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATC
TGGTACACGTAGTAGCCTGCACTTA
Found at i:72339452 original size:80 final size:79
Alignment explanation
Indices: 72339368--72339539 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
72339358 GGACTAAGAT
*
72339368 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
72339432 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
72339448 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
72339513 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
72339527 CCGAAGGCATTTG
1 CCGAAGGCATTTG
72339540 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:72339519 original size:39 final size:39
Alignment explanation
Indices: 72339315--72339537 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
72339305 TTGAATGCTG
* * * * *
72339315 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
72339355 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
72339394 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
72339435 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
72339475 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
72339514 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72339538 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:72339557 original size:79 final size:80
Alignment explanation
Indices: 72339395--72339572 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
72339385 AGATACAAAT
* * * *
72339395 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
72339460 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
72339475 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
72339539 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
72339554 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72339573 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:72350545 original size:20 final size:21
Alignment explanation
Indices: 72350520--72350566 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
72350510 AAAATAATTG
*
72350520 ATTGAAA-AACATAACAATCA
1 ATTGAAACAACAAAACAATCA
*
72350540 ATTGAAACAACAAAACAATCG
1 ATTGAAACAACAAAACAATCA
72350561 ATTGAA
1 ATTGAA
72350567 GAGAATCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.57, C:0.15, G:0.09, T:0.19
Consensus pattern (21 bp):
ATTGAAACAACAAAACAATCA
Found at i:72353643 original size:25 final size:25
Alignment explanation
Indices: 72353582--72353646 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
72353572 AGATTCCCAA
* *
72353582 CTCGTATGAGCTTACTAATTTATAG
1 CTCGTATGAGCATACTAATTCATAG
*
72353607 CTC--ATGAAAGCATACTGATTCATAG
1 CTCGTATG--AGCATACTAATTCATAG
72353632 CTCGTATGAGCATAC
1 CTCGTATGAGCATAC
72353647 ATGTATAGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
23 3 0.09
25 27 0.82
27 3 0.09
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (25 bp):
CTCGTATGAGCATACTAATTCATAG
Found at i:72353833 original size:30 final size:28
Alignment explanation
Indices: 72353799--72353854 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
72353789 GAAATAAATG
72353799 GAAATGGT-ATTACATGATATATTGAAACAT
1 GAAATGGTGA-TACATG-TATA-TGAAACAT
72353829 GAAATGGTGATACATGTATATGAAAC
1 GAAATGGTGATACATGTATATGAAAC
72353855 TTGCTTAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 6 0.24
29 4 0.16
30 14 0.56
31 1 0.04
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (28 bp):
GAAATGGTGATACATGTATATGAAACAT
Found at i:72362325 original size:49 final size:47
Alignment explanation
Indices: 72362104--72362654 Score: 859
Period size: 47 Copynumber: 11.6 Consensus size: 47
72362094 CCCTTCGGGA
* * * * * *
72362104 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72362151 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72362198 CTCATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362245 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72362292 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72362341 CTTATCACATATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72362390 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362437 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362484 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72362533 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362582 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72362629 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
72362655 CACAATTATC
Statistics
Matches: 470, Mismatches: 30, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
47 285 0.61
49 185 0.39
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72362440 original size:192 final size:192
Alignment explanation
Indices: 72362104--72362654 Score: 939
Period size: 192 Copynumber: 2.9 Consensus size: 192
72362094 CCCTTCGGGA
* * * * * *
72362104 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTGTCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* * *
72362165 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
*
72362230 CATTGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72362292 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
72362357 ACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
72362422 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362484 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
72362549 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
* * *
72362614 CATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
131 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
72362655 CACAATTATC
Statistics
Matches: 342, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 10 0.03
189 1 0.00
190 37 0.11
192 294 0.86
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (192 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72375329 original size:39 final size:39
Alignment explanation
Indices: 72375273--72375488 Score: 342
Period size: 39 Copynumber: 5.5 Consensus size: 39
72375263 ACAAAGCATG
72375273 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
** *
72375314 CGGGACTTAGCCCGGATATAACGCCAGAACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
** *
72375353 CGGGACTTAGCCCGGATATAGCACCAGCACGAATGTCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
72375392 CGGGACTTAGCTCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
72375431 CAGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
72375470 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
72375489 TTTTCCAACA
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 153 0.95
40 2 0.01
41 6 0.04
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:72375524 original size:39 final size:39
Alignment explanation
Indices: 72375481--72375613 Score: 187
Period size: 39 Copynumber: 3.4 Consensus size: 39
72375471 GGGACTTAGC
* * *
72375481 CCGGATATTTTTCCAACACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATATTTCCAACA-TAAAGCCTGCGGACTTCAAGT
* *
72375520 CCGGATATATTTCCAGCATAAAGCCTACGGACTTCAAGT
1 CCGGATATATTTCCAACATAAAGCCTGCGGACTTCAAGT
*
72375559 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAACATAAAGCCTGCGGACTTCAAGT
*
72375598 CCGGATATTTTTCCAA
1 CCGGATATATTTCCAA
72375614 TACCATGCAT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 84 0.99
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAACATAAAGCCTGCGGACTTCAAGT
Found at i:72375524 original size:78 final size:80
Alignment explanation
Indices: 72375275--72375605 Score: 306
Period size: 78 Copynumber: 4.2 Consensus size: 80
72375265 AAAGCATGCG
**
72375275 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACGCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* *
72375340 GA-ACGAATGCCTTCG
66 -ACACGAATGCCTGCA
** * * *
72375355 GGAC-TT-AGCCCGGATATAGCACCAGCACGAATGTCTTCGGGACTTAGCTCGGATATAATACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* *
72375418 GCACGAATGCCTTCA
66 ACACGAATGCCTGCA
**
72375433 GGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
**
72375496 ACACTTA-GCCTGC-
66 ACACGAATGCCTGCA
* * * * * * * *
72375509 GGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTAC-GGACTTCAAGTCCGGATATATTTC
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT--AGCCCGGATATAATTC
* * *
72375572 CAGCA-TAAAGCCTGC-
64 CAACACGAATGCCTGCA
* *
72375587 GGACTTCAAGTCCGGATAT
1 GGACTTTAAGCCCGGATAT
72375606 TTTTCCAATA
Statistics
Matches: 215, Mismatches: 30, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
76 10 0.05
77 16 0.07
78 183 0.85
79 2 0.01
80 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
ACACGAATGCCTGCA
Found at i:72375525 original size:117 final size:118
Alignment explanation
Indices: 72375271--72375537 Score: 344
Period size: 117 Copynumber: 2.3 Consensus size: 118
72375261 CCACAAAGCA
*
72375271 TGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC
1 TGCGGGACTTTAAG-CCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAC
* * *
72375336 GCCAGAACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGTC
65 ACCAGAACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAACACGAATGCC
* *
72375390 TTCGGGAC-TT-AGCTCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAT
1 TGCGGGACTTTAAGC-CGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAC
* **** **
72375453 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTCCAACACTTA-GCC
65 ACCAGAACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAACACGAATGCC
* *
72375506 TGC-GGACTTTAAGTCCGGATATATTTCCAGCA
1 TGCGGGACTTTAAG-CCGGATATAATACCAGCA
72375538 TAAAGCCTAC
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
115 4 0.03
116 7 0.05
117 107 0.84
118 3 0.02
119 7 0.05
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (118 bp):
TGCGGGACTTTAAGCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
CCAGAACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAACACGAATGCC
Found at i:72378422 original size:47 final size:47
Alignment explanation
Indices: 72378344--72379047 Score: 1066
Period size: 47 Copynumber: 14.6 Consensus size: 47
72378334 TCCTTCGGGA
* * * * * *
72378344 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72378391 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72378438 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72378485 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72378536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72378583 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72378632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72378679 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72378730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72378777 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72378826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72378873 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72378922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72378969 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72379018 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
72379048 TCAAATATAC
Statistics
Matches: 605, Mismatches: 36, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
47 336 0.56
49 180 0.30
51 89 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72378622 original size:96 final size:96
Alignment explanation
Indices: 72378344--72379047 Score: 1250
Period size: 96 Copynumber: 7.3 Consensus size: 96
72378334 TCCTTCGGGA
* * * * * * * *
72378344 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
72378407 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
72378438 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
72378503 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
72378536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378601 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72378632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
72378697 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
72378730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378795 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72378826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378891 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72378922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378987 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72379018 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
72379048 TCAAATATAC
Statistics
Matches: 591, Mismatches: 13, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
94 46 0.08
96 359 0.61
98 186 0.31
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72378671 original size:194 final size:194
Alignment explanation
Indices: 72378344--72379047 Score: 1272
Period size: 194 Copynumber: 3.6 Consensus size: 194
72378334 TCCTTCGGGA
* * * * * * * *
72378344 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * *
72378407 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACATTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
72378472 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72378536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378601 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
72378666 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72378730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378795 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
72378860 TCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72378922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72378987 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCAT
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCAT
72379048 TCAAATATAC
Statistics
Matches: 498, Mismatches: 12, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
192 214 0.43
194 284 0.57
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (194 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72381373 original size:85 final size:85
Alignment explanation
Indices: 72381244--72381422 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72381234 TATTTTATTG
*
72381244 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72381309 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72381329 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72381394 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72381414 CCCATGCTC
1 CCCATGCTC
72381423 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72383147 original size:40 final size:40
Alignment explanation
Indices: 72383119--72383504 Score: 610
Period size: 40 Copynumber: 9.7 Consensus size: 40
72383109 TGATTACTCT
* * * *
72383119 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** * *
72383159 TTGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * * *
72383199 TTGGAACTTAGCCCGGATACATCACTAGCACAAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
72383239 TTGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
72383279 TCGGGACTTAGCCCGGATATATCACTAGCACGAATCCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
72383319 TCGGGACTTAGCCCGGATATATCACTAGCACGAATCCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
72383359 TCGAGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
72383399 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
72383439 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
72383479 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
72383505 CTCAATTCTC
Statistics
Matches: 323, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 323 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:72385011 original size:47 final size:47
Alignment explanation
Indices: 72384933--72385536 Score: 938
Period size: 47 Copynumber: 12.6 Consensus size: 47
72384923 CCCTTCGGGA
* * * * * *
72384933 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72384980 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72385027 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72385074 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72385125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72385172 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72385219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72385266 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72385315 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72385362 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72385411 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72385458 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72385507 CTTATCACATATATACACTTTCATATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
72385537 TCAAATATAC
Statistics
Matches: 516, Mismatches: 31, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
47 336 0.65
49 135 0.26
51 45 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72385307 original size:96 final size:96
Alignment explanation
Indices: 72384933--72385536 Score: 1045
Period size: 96 Copynumber: 6.3 Consensus size: 96
72384923 CCCTTCGGGA
* * * * * * * *
72384933 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
72384996 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72385027 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
72385092 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
72385125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72385188 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72385219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72385284 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72385315 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72385380 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
72385411 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
72385476 ACTTTCACATTCATCACATTGGCCATTTGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
72385507 CTTATCACATATATACACTTTCATATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
72385537 TCAAATATAC
Statistics
Matches: 491, Mismatches: 13, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
94 141 0.29
96 259 0.53
98 91 0.19
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72387863 original size:85 final size:85
Alignment explanation
Indices: 72387734--72387912 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72387724 TATTTTATTG
*
72387734 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72387799 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72387819 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72387884 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72387904 CCCATGCTC
1 CCCATGCTC
72387913 ATGGCTGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72390530 original size:142 final size:141
Alignment explanation
Indices: 72390254--72390519 Score: 324
Period size: 142 Copynumber: 1.9 Consensus size: 141
72390244 GTAGGGTACT
* * ** *
72390254 AATGCCATATCCCAGATATGGTTTTACATGGAGCCACATATTGATGCCAATGCCTTGTCCCAAAC
1 AATGCCATATCCCAGACATGGTCTTACATGGAGCCACATAACGATGCCAATGCCATGTCCCAAAC
* * * *
72390319 ATGGTCTTACATGGGATCACACATATCGAAGCCGATAGCCCAACTATGGTCTTACACGATGTATT
66 ATGGTCTTACATGGGATCACAAAGATCCAAGCCGATAGCCCAACTATGGTCTTACACGA-GGATT
72390384 CATATCAATACC
130 CATATCAATACC
* * *
72390396 AATGCCATGTCCCAGACATGGTCTTACATGG-GATCACATAACGATGCCAATGCCATGTCCCATA
1 AATGCCATATCCCAGACATGGTCTTACATGGAG-CCACATAACGATGCCAATGCCATGTCCCAAA
72390460 CATGGTCTTACATGGGATCACATAACGATGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACA
65 CATGGTCTTACATGGGATCACA-AA-GAT-CCAA-GCCGATAG-CCCA-ACTATGGTCTTACA
72390520 TGGGATCATA
Statistics
Matches: 106, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
141 1 0.01
142 76 0.72
143 1 0.01
144 3 0.03
145 20 0.19
146 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (141 bp):
AATGCCATATCCCAGACATGGTCTTACATGGAGCCACATAACGATGCCAATGCCATGTCCCAAAC
ATGGTCTTACATGGGATCACAAAGATCCAAGCCGATAGCCCAACTATGGTCTTACACGAGGATTC
ATATCAATACC
Done.