Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 228 of 318
Found at i:72390571 original size:48 final size:48
Alignment explanation
Indices: 72390254--72390574 Score: 289
Period size: 48 Copynumber: 6.7 Consensus size: 48
72390244 GTAGGGTACT
* * * * **
72390254 AATGCCATATCCCAGATATGGTTTTACAT-GGAGCCACATATTGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGA-TCACATAACGATGCC
* * * * *
72390302 AATGCCTTGTCCCAAACATGGTCTTACATGGGATCACA-CA-TAT-CG
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCC
* * * * * *
72390347 AA-GCCGATAG-CCCA-ACTATGGTCTTACACGATGTAT-TCATATCAATACC
1 AATGCC-AT-GTCCCAGAC-ATGGTCTTACATG--GGATCACATAACGATGCC
72390396 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCC
*
72390444 AATGCCATGTCCCATACATGGTCTTACATGGGATCACATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCC
* * **
72390492 AATGCCATGTCCCAGACATGGTCTTACATGGGATCATATATCGATGAT
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCC
* * * * *
72390540 GATGCCATATCCCAAATATGGTCTTATATGGGATC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATC
72390575 TCATCAACCC
Statistics
Matches: 225, Mismatches: 35, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
44 5 0.02
45 20 0.09
46 5 0.02
47 6 0.03
48 160 0.71
49 24 0.11
50 5 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATGCC
Found at i:72392718 original size:22 final size:22
Alignment explanation
Indices: 72392690--72392739 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
72392680 AGCTCAAGGT
*
72392690 CGTAAATAAGACAGCATATAGC
1 CGTAAATAAGACAGCACATAGC
* *
72392712 CGTAAATAGGATAGCACATAGC
1 CGTAAATAAGACAGCACATAGC
*
72392734 CATAAA
1 CGTAAA
72392740 CATTGCAGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (22 bp):
CGTAAATAAGACAGCACATAGC
Found at i:72392938 original size:22 final size:22
Alignment explanation
Indices: 72392908--72392965 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
72392898 AGTCATCCAT
72392908 AAAGCCATAATCAGGTTGGCAC
1 AAAGCCATAATCAGGTTGGCAC
* * *
72392930 AGAGCCAT-ATGTAGGTTGGCCC
1 AAAGCCATAAT-CAGGTTGGCAC
72392952 AAAGCCATAATCAG
1 AAAGCCATAATCAG
72392966 AATAATTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
AAAGCCATAATCAGGTTGGCAC
Found at i:72393154 original size:41 final size:41
Alignment explanation
Indices: 72393109--72393230 Score: 208
Period size: 41 Copynumber: 3.0 Consensus size: 41
72393099 AAAGCCACCA
* * *
72393109 GTGGATCCACGATCATCAAGCAACCATGCGATCCTTAATTG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATTG
*
72393150 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATTG
72393191 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATT
72393231 TCTTTCTCCG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATTG
Found at i:72393514 original size:27 final size:27
Alignment explanation
Indices: 72393476--72393533 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
72393466 ACAAGGGTGT
* *
72393476 TTTGGAAAATTATC-GAAATACCCTTGA
1 TTTGGAAAATTA-CAGAAACACCCCTGA
72393503 TTTGGAAAATTACAGAAACACCCCTGA
1 TTTGGAAAATTACAGAAACACCCCTGA
72393530 TTTG
1 TTTG
72393534 TAGGGTAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (27 bp):
TTTGGAAAATTACAGAAACACCCCTGA
Found at i:72397105 original size:17 final size:18
Alignment explanation
Indices: 72397073--72397106 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72397063 CAGTGTGGTT
72397073 TACCCTATGAGGCCCACG
1 TACCCTATGAGGCCCACG
*
72397091 TACCCT-TGGGGCCCAC
1 TACCCTATGAGGCCCAC
72397107 ACGACCCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (18 bp):
TACCCTATGAGGCCCACG
Found at i:72400593 original size:27 final size:27
Alignment explanation
Indices: 72400522--72400635 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
72400512 TGAAGGAAGC
72400522 GTTCTGGTGGC-CATGCCACAAATATCT
1 GTTCTGGTGGCTC-TGCCACAAATATCT
*
72400549 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCT
*
72400577 GTTCTGGTGGCTCTGCCA-TAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
72400603 ATATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
*
72400630 GATCTG
1 GTTCTG
72400636 CCAGTCACGC
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 12 0.16
27 38 0.51
28 25 0.33
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:72403698 original size:43 final size:43
Alignment explanation
Indices: 72403651--72403935 Score: 381
Period size: 43 Copynumber: 6.6 Consensus size: 43
72403641 GTGTGTGCGA
* * *
72403651 GTAAGGCCACGTCTGGGACGTTGGCATTGATATGTTATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * *
72403694 GTAAGACCACGTCTGGGACATTAGCATCGATGTGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* *
72403737 GTAAGACCACGTCTAGGACGTTGGCATCGATATATGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
*
72403780 GTAAGACCACATCTGGGACGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * *
72403823 GTAAGGCCACATCTAGGATGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
72403866 GTAAAACCACGTCTGGGACGTTGGCATCGATTTGTGATTACAT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
*** *
72403909 GTAAGACCTTATCTAGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
72403936 TGTATGATAT
Statistics
Matches: 211, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 211 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
Found at i:72418572 original size:27 final size:27
Alignment explanation
Indices: 72418540--72418592 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
72418530 AGCCATACAT
72418540 CATATAGGGGCAAAATAATCATTTTAC
1 CATATAGGGGCAAAATAATCATTTTAC
*
72418567 CATATAGGGGCAAAATAGTCATTTTA
1 CATATAGGGGCAAAATAATCATTTTA
72418593 TTAAATAGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (27 bp):
CATATAGGGGCAAAATAATCATTTTAC
Found at i:72418600 original size:27 final size:27
Alignment explanation
Indices: 72418543--72418603 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
72418533 CATACATCAT
*
72418543 ATAGGGGCAAAATAATCATTTTACCAT
1 ATAGGGGCAAAATAATCATTTTACCAA
* **
72418570 ATAGGGGCAAAATAGTCATTTTATTAA
1 ATAGGGGCAAAATAATCATTTTACCAA
72418597 ATAGGGG
1 ATAGGGG
72418604 GTCTAGGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (27 bp):
ATAGGGGCAAAATAATCATTTTACCAA
Found at i:72430373 original size:43 final size:42
Alignment explanation
Indices: 72430299--72430417 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 42
72430289 CTGATATGTG
* **
72430299 ATTTCGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTCTA
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTA--TCTA
*
72430342 TTTTACGT-TAAGACCATGTCTGGGACATTGGCATCGTATCTA
1 ATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTA
* *
72430384 ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 ATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
72430418 TAATGTTTGA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
41 3 0.05
42 31 0.47
43 28 0.42
44 4 0.06
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTA
Found at i:72433489 original size:40 final size:40
Alignment explanation
Indices: 72433453--72433682 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
72433443 GGATATAGCT
*
72433453 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
72433493 GTTCAG-ACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTC-GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
72433533 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
72433573 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
72433613 ACTCGCACAAATGCCTTTGGGACTTAGCTCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
72433653 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
72433683 CGTTATCATC
Statistics
Matches: 174, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
40 171 0.98
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:72433583 original size:80 final size:80
Alignment explanation
Indices: 72433427--72433682 Score: 351
Period size: 80 Copynumber: 3.2 Consensus size: 80
72433417 AAACCAAGTA
* * *
72433427 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
**
72433489 AGTAGTTCAG-ACAAATG
64 AGTAACTC-GCACAAATG
*
72433506 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
72433571 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* *
72433586 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTTGGGACTTAGCTCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
72433650 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
72433666 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
72433683 CGTTATCATC
Statistics
Matches: 161, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
79 15 0.09
80 144 0.89
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:72446420 original size:26 final size:26
Alignment explanation
Indices: 72446391--72446441 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
72446381 ACACTTACTG
* *
72446391 TTACTGGCAGCTATGCTGTGATATTA
1 TTACTGCCAGCTATGCTGCGATATTA
*
72446417 TTACTGCCAGCTGTGCTGCGATATT
1 TTACTGCCAGCTATGCTGCGATATT
72446442 GGTGTGTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
TTACTGCCAGCTATGCTGCGATATTA
Found at i:72446492 original size:37 final size:36
Alignment explanation
Indices: 72446442--72446520 Score: 131
Period size: 37 Copynumber: 2.2 Consensus size: 36
72446432 CTGCGATATT
*
72446442 GGTGTGTTGGTTGGGTGGGTTGATTGATATCCCCACA
1 GGTGTGCTGGTTGGGTGGGTTGATTGATAT-CCCACA
*
72446479 GGTGTGCTGGTTGGGTGGGTTGATTGATATCCCATA
1 GGTGTGCTGGTTGGGTGGGTTGATTGATATCCCACA
72446515 GGTGTG
1 GGTGTG
72446521 TTGGCTGGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 11 0.28
37 29 0.73
ACGTcount: A:0.13, C:0.11, G:0.41, T:0.35
Consensus pattern (36 bp):
GGTGTGCTGGTTGGGTGGGTTGATTGATATCCCACA
Found at i:72450011 original size:40 final size:39
Alignment explanation
Indices: 72449814--72449997 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 39
72449804 TGAATGATGT
* * *
72449814 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
72449854 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
72449894 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
72449932 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
72449973 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72449998 AACGAGGACC
Statistics
Matches: 125, Mismatches: 10, Indels: 18
0.82 0.07 0.12
Matches are distributed among these distances:
39 35 0.28
40 78 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:72450019 original size:79 final size:79
Alignment explanation
Indices: 72449814--72450030 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 79
72449804 TGAATGATGT
* *
72449814 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACC-ATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCTATATCCGG-TTAAG-TCCGAAGGCATT
*
72449877 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* *
72449894 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCTATATCC-GGTTAAGT-CCGAAGGCATTT
72449957 GTGCGA-ATTACT-ATAA
64 GTGCGAGA-TACTAAT-A
* ** *
72449973 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GACCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCTATATCCGGTT-AAGTCCGAAGG
72450031 TACGTGATTT
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 5 0.04
79 65 0.56
80 47 0.40
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCTATATCCGGTTAAGTCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:72457782 original size:39 final size:40
Alignment explanation
Indices: 72457684--72457865 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
72457674 AATGATGTCT
* *
72457684 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCC
*
72457724 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTCC
* *
72457764 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
* *
72457803 GGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-TCC
*
72457843 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
72457866 AACGAGGACC
Statistics
Matches: 122, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
39 36 0.30
40 73 0.60
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCC
Found at i:72457817 original size:79 final size:81
Alignment explanation
Indices: 72457684--72457865 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
72457674 AATGATGTCT
*
72457684 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
72457748 GCGAGA-TACTA-ATTCC
66 GCGA-ATTACTATA-ACC
* * * **
72457764 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
72457826 TGCGAATTACTATAACC
65 TGCGAATTACTATAACC
*
72457843 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
72457866 AACGAGGACC
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 57 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAATTACTATAACC
Found at i:72457887 original size:79 final size:79
Alignment explanation
Indices: 72457734--72457888 Score: 192
Period size: 79 Copynumber: 2.0 Consensus size: 79
72457724 GGACTAAGAT
* ** *
72457734 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
72457799 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
72457813 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
*
72457875 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
72457889 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.05
79 38 0.58
80 25 0.38
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:72467460 original size:52 final size:53
Alignment explanation
Indices: 72467361--72467470 Score: 141
Period size: 58 Copynumber: 2.0 Consensus size: 53
72467351 CTTGAGCTGG
72467361 AACACACTAACACCTGCACATTAATTCGGCTAAAACAAAGACAAATTAAATAGCAGCA
1 AACACACTAACACCTGCACATTAATTCGGCT-----AAAGACAAATTAAATAGCAGCA
* * *
72467419 AACACATTAATACCTGCACATTAATTCGGCT-AAGACAAATTAATTAGCAGCA
1 AACACACTAACACCTGCACATTAATTCGGCTAAAGACAAATTAAATAGCAGCA
72467471 GCTAATTAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
52 20 0.41
58 29 0.59
ACGTcount: A:0.45, C:0.23, G:0.11, T:0.21
Consensus pattern (53 bp):
AACACACTAACACCTGCACATTAATTCGGCTAAAGACAAATTAAATAGCAGCA
Found at i:72468087 original size:22 final size:22
Alignment explanation
Indices: 72468059--72468104 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
72468049 ACAAAAGAGT
72468059 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72468081 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72468103 AA
1 AA
72468105 GGTTAAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (22 bp):
AAAACAAATTAGTGACTTGATG
Found at i:72469471 original size:13 final size:12
Alignment explanation
Indices: 72469444--72469475 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
72469434 GTTATTTTTG
72469444 TTTTTCAAAGGC
1 TTTTTCAAAGGC
72469456 TTTTTCAAAGGC
1 TTTTTCAAAGGC
*
72469468 CTTTTCAA
1 TTTTTCAA
72469476 GTTCTTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (12 bp):
TTTTTCAAAGGC
Found at i:72469533 original size:5 final size:5
Alignment explanation
Indices: 72469523--72469578 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
72469513 CTTTTGCCTC
* *
72469523 TCTTT TCTTT T-ATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCTTT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
72469569 TCTTT TCTTT
1 TCTTT TCTTT
72469579 GTTTTCTCGT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 6 0.14
5 26 0.62
6 6 0.14
7 4 0.10
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:72469551 original size:21 final size:20
Alignment explanation
Indices: 72469525--72469585 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
72469515 TTTGCCTCTC
72469525 TTTTCTTTTATTTCGTTTTCT
1 TTTTCTTTT-TTTCGTTTTCT
* *
72469546 TTTTCTTCTTTTGCTTTTTC-
1 TTTTCTT-TTTTTCGTTTTCT
72469566 TTTTCTTTTCTTT-GTTTTCT
1 TTTTCTTTT-TTTCGTTTTCT
72469586 CGTTACAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 7 0.21
20 9 0.27
21 15 0.45
22 2 0.06
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTTTTCGTTTTCT
Found at i:72469562 original size:15 final size:14
Alignment explanation
Indices: 72469523--72469578 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 14
72469513 CTTTTGCCTC
72469523 TCTTTTCTTTTAT-T
1 TCTTTTCTTTT-TCT
72469537 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
72469552 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
72469569 TCTTTTCTTT
1 TCTTTTCTTT
72469579 GTTTTCTCGT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 7 0.19
15 19 0.51
16 4 0.11
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:72474023 original size:31 final size:31
Alignment explanation
Indices: 72473988--72474053 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
72473978 TCTTACTTGC
72473988 CTTTTGCCTCTCTTT-CTTTTT-ATTTCGTTTT
1 CTTTTGCCTCT-TTTGCTTTTTCATTTC-TTTT
* * *
72474019 CTTTTTCTTCTTTTGCTTTTTCTTTTCTTTT
1 CTTTTGCCTCTTTTGCTTTTTCATTTCTTTT
72474050 CTTT
1 CTTT
72474054 GTTTTCTCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 3 0.10
31 23 0.77
32 4 0.13
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.73
Consensus pattern (31 bp):
CTTTTGCCTCTTTTGCTTTTTCATTTCTTTT
Found at i:72474027 original size:26 final size:25
Alignment explanation
Indices: 72473998--72474060 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
72473988 CTTTTGCCTC
72473998 TCTTTCTTTT-TATTTCGTTTTCTTT
1 TCTTTCTTTTCTATTTC-TTTTCTTT
*
72474023 T-TCTTCTTTTGCTTTTTCTTTTCTTT
1 TCT-TTCTTTT-CTATTTCTTTTCTTT
*
72474049 TCTTTGTTTTCT
1 TCTTTCTTTTCT
72474061 CGTTACAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 1 0.03
25 10 0.31
26 15 0.47
27 6 0.19
ACGTcount: A:0.02, C:0.17, G:0.05, T:0.76
Consensus pattern (25 bp):
TCTTTCTTTTCTATTTCTTTTCTTT
Found at i:72474037 original size:15 final size:14
Alignment explanation
Indices: 72474000--72474053 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 14
72473990 TTTGCCTCTC
*
72474000 TTTCTTTTTATTTCGT
1 TTTCTTTTT-CTTC-T
72474016 TTTCTTTTTCTTCT
1 TTTCTTTTTCTTCT
72474030 TTTGCTTTTTCTTTTCT
1 TTT-CTTTTTC--TTCT
72474047 TTTCTTT
1 TTTCTTT
72474054 GTTTTCTCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
14 4 0.12
15 10 0.29
16 13 0.38
17 7 0.21
ACGTcount: A:0.02, C:0.17, G:0.04, T:0.78
Consensus pattern (14 bp):
TTTCTTTTTCTTCT
Found at i:72474054 original size:21 final size:20
Alignment explanation
Indices: 72474015--72474058 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
72474005 TTTTATTTCG
72474015 TTTTCTTTTTCTTCTTTTGCT
1 TTTTCTTTTTCTTCTTTTG-T
*
72474036 TTTTC-TTTTCTTTTCTTTGT
1 TTTTCTTTTTCTTCT-TTTGT
72474056 TTT
1 TTT
72474059 CTCGTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.80
Consensus pattern (20 bp):
TTTTCTTTTTCTTCTTTTGT
Found at i:72477073 original size:22 final size:22
Alignment explanation
Indices: 72477045--72477090 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
72477035 ACAAAAGAGT
72477045 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72477067 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72477089 AA
1 AA
72477091 GGTTAAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (22 bp):
AAAACAAATTAGTGACTTGATG
Found at i:72478504 original size:5 final size:5
Alignment explanation
Indices: 72478494--72478550 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
72478484 CTTTTGCCTC
*
72478494 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
72478541 TCTTT TCTTT
1 TCTTT TCTTT
72478551 GTTTTCTCGT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:72478534 original size:15 final size:14
Alignment explanation
Indices: 72478494--72478550 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
72478484 CTTTTGCCTC
*
72478494 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
72478509 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
72478524 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
72478541 TCTTTTCTTT
1 TCTTTTCTTT
72478551 GTTTTCTCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:72478551 original size:21 final size:21
Alignment explanation
Indices: 72478494--72478555 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
72478484 CTTTTGCCTC
* *
72478494 TCTTTTCTTTT-TATTTCGTTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
72478515 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
72478536 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
72478556 CTCGTTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 7 0.21
21 22 0.65
22 5 0.15
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:72481579 original size:22 final size:22
Alignment explanation
Indices: 72481551--72481596 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
72481541 ACAAAAGAGT
72481551 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72481573 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72481595 AA
1 AA
72481597 GGTTAAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (22 bp):
AAAACAAATTAGTGACTTGATG
Found at i:72483022 original size:6 final size:5
Alignment explanation
Indices: 72483000--72483055 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
72482990 CTTTTGCCTC
72483000 TCTTT TCTTT T-TATT TCGTTT TCTTT TC--T TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
72483046 TCTTT TCTTT
1 TCTTT TCTTT
72483056 GTTTTCTCGT
Statistics
Matches: 44, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
3 3 0.07
4 1 0.02
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:72486071 original size:22 final size:22
Alignment explanation
Indices: 72486043--72486088 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
72486033 ACAAAAGAGT
72486043 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72486065 AAAACAAATTAGTGACTTGATG
1 AAAACAAATTAGTGACTTGATG
72486087 AA
1 AA
72486089 GGTTAAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (22 bp):
AAAACAAATTAGTGACTTGATG
Found at i:72487455 original size:13 final size:12
Alignment explanation
Indices: 72487428--72487459 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
72487418 GTTATTTTTG
72487428 TTTTTCAAAGGC
1 TTTTTCAAAGGC
72487440 TTTTTCAAAGGC
1 TTTTTCAAAGGC
*
72487452 CTTTTCAA
1 TTTTTCAA
72487460 GTTCTTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (12 bp):
TTTTTCAAAGGC
Found at i:72487517 original size:5 final size:5
Alignment explanation
Indices: 72487507--72487563 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
72487497 CTTTTGCCTC
* * *
72487507 TCTTT TCTTTT TATTT TGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TC-TTT TCTTT TCTTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
72487554 TCTTT TCTTT
1 TCTTT TCTTT
72487564 GTTTTCTCGT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
4 3 0.07
5 30 0.70
6 6 0.14
7 4 0.09
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:72487539 original size:25 final size:25
Alignment explanation
Indices: 72487511--72487559 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
72487501 TGCCTCTCTT
*
72487511 TTCTTTT-TATTTTGTTTTCTTTTTC
1 TTCTTTTCT-TTTTCTTTTCTTTTTC
72487536 TTCTTTTGCTTTTTCTTTTCTTTT
1 TTCTTTT-CTTTTTCTTTTCTTTT
72487560 CTTTGTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 13 0.62
27 1 0.05
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.80
Consensus pattern (25 bp):
TTCTTTTCTTTTTCTTTTCTTTTTC
Found at i:72487564 original size:21 final size:20
Alignment explanation
Indices: 72487520--72487568 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
72487510 TTTCTTTTTA
72487520 TTTTG-TTTTCTTTTTCTTC
1 TTTTGTTTTTCTTTTTCTTC
*
72487539 TTTTGCTTTTTC-TTTTCTTT
1 TTTTG-TTTTTCTTTTTCTTC
72487559 TCTTTGTTTT
1 T-TTTGTTTT
72487569 CTCGTTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 12 0.46
21 9 0.35
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (20 bp):
TTTTGTTTTTCTTTTTCTTC
Found at i:72489144 original size:46 final size:46
Alignment explanation
Indices: 72489088--72489255 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 46
72489078 TGTTTGGGCA
*
72489088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
* * *
72489134 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAA-T--G
*
72489179 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
* * *
72489227 -CCTGAGCTCGTTAAGTTGAGTCTGAGTTC
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTC
72489256 GCCTATGGGC
Statistics
Matches: 102, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 52 0.51
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
Found at i:72489244 original size:93 final size:93
Alignment explanation
Indices: 72489084--72489256 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
72489074 AGGATGTTTG
* * *
72489084 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCCGAACTCGTTAAG
72489149 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
72489177 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG-CCTGAGCTCGTTAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCC-GAACTCGTTAA
*
72489241 GTTGAGTCTGAGTTCG
65 GTTGAGTCCGAGTTCG
72489257 CCTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCCGAACTCGTTAAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72492169 original size:15 final size:15
Alignment explanation
Indices: 72492149--72492217 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
72492139 ATATCTTGGG
72492149 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
72492164 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
72492179 ATTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
72492194 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72492209 TTTCTTTAT
1 TTTCTTTAT
72492218 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.14, C:0.17, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72492218 original size:30 final size:30
Alignment explanation
Indices: 72492140--72492227 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
72492130 CATAGTATCA
* * * *
72492140 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
72492170 TAT-TCTGGAATTCTTTATTCTGGATTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
72492200 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
72492228 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
29 8 0.16
30 40 0.82
31 1 0.02
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:72494686 original size:46 final size:46
Alignment explanation
Indices: 72494630--72494805 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
72494620 TGTTTGGGCA
72494630 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72494676 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
72494721 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
72494769 CCCGAGCTCGTTAAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72494806 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72494786 original size:93 final size:93
Alignment explanation
Indices: 72494626--72494798 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
72494616 AGGATGTTTG
* * * *
72494626 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTAAG
72494691 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
72494719 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTAAG
72494784 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
72494799 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTAAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72497379 original size:15 final size:15
Alignment explanation
Indices: 72497359--72497389 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72497349 TGATCCGAAA
*
72497359 TGTTCAATAGGAGAC
1 TGTTCAACAGGAGAC
72497374 TGTTCAACAGGAGAC
1 TGTTCAACAGGAGAC
72497389 T
1 T
72497390 CTCTATGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (15 bp):
TGTTCAACAGGAGAC
Found at i:72507065 original size:39 final size:40
Alignment explanation
Indices: 72507020--72507191 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
72507010 GCTCCTCGTT
* * *
72507020 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
72507060 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
72507099 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
72507139 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
72507179 CAAATGCCTTCGG
1 CAAATGCCTTCGG
72507192 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:72507120 original size:40 final size:39
Alignment explanation
Indices: 72507022--72507244 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
72507012 TCCTCGTTCA
* * * *
72507022 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
72507061 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
72507100 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
72507140 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
72507180 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
72507221 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72507245 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:72507204 original size:80 final size:79
Alignment explanation
Indices: 72507020--72507244 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
72507010 GCTCCTCGTT
* * * * *
72507020 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
72507084 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
72507099 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
72507164 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
72507179 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
72507243 GA
63 GA
72507245 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:72507253 original size:41 final size:41
Alignment explanation
Indices: 72507176--72507253 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
72507166 TTTGTATCTC
* * *
72507176 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
72507217 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
72507254 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:72515010 original size:39 final size:40
Alignment explanation
Indices: 72514965--72515136 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
72514955 GCTCCTCGTT
* * *
72514965 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
72515005 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
72515044 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
72515084 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
72515124 CAAATGCCTTCGG
1 CAAATGCCTTCGG
72515137 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:72515065 original size:40 final size:39
Alignment explanation
Indices: 72514967--72515189 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
72514957 TCCTCGTTCA
* * * *
72514967 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
72515006 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
72515045 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
72515085 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
72515125 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
72515166 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72515190 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:72515149 original size:80 final size:79
Alignment explanation
Indices: 72514965--72515189 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
72514955 GCTCCTCGTT
* * * * *
72514965 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
72515029 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
72515044 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
72515109 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
72515124 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
72515188 GA
63 GA
72515190 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:72515198 original size:41 final size:41
Alignment explanation
Indices: 72515121--72515198 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
72515111 TTTGTATCTC
* * *
72515121 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
72515162 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
72515199 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:72518273 original size:13 final size:13
Alignment explanation
Indices: 72518255--72518281 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72518245 AAAATAATCG
72518255 CACACGGGCGTGT
1 CACACGGGCGTGT
72518268 CACACGGGCGTGT
1 CACACGGGCGTGT
72518281 C
1 C
72518282 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:72519596 original size:43 final size:43
Alignment explanation
Indices: 72519548--72519718 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
72519538 GTTATCGAGA
72519548 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * *
72519591 TGTGATTACGTGTAAAACCATGTATGGAACATTGGCATTGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * * *
72519635 T-TGGTTTCGTGAAAGACC-TCGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCAT-GTCTGGGACATTGGCATTGTAT
* * *
72519676 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
72519719 GAGTTTTATG
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 9 0.09
43 86 0.84
44 5 0.05
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:72522201 original size:16 final size:16
Alignment explanation
Indices: 72522180--72522215 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
72522170 GGCAAATCCT
*
72522180 GAAATGCCGGAAAGTC
1 GAAATGCCGAAAAGTC
*
72522196 GAAATGCTGAAAAGTC
1 GAAATGCCGAAAAGTC
72522212 GAAA
1 GAAA
72522216 GTTTAGCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (16 bp):
GAAATGCCGAAAAGTC
Found at i:72522462 original size:28 final size:28
Alignment explanation
Indices: 72522429--72522530 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
72522419 ATTGCATGAC
* *
72522429 TATGAATATGATTGGGCTTGACGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
72522457 TATGAA-AGTGATTGGGCCTGATGGGCCA
1 TATGAATA-TGATTGGGCCTGATGGGCCA
* **
72522485 TATGAATGTGATTGGGCCCCATGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
**
72522513 TATGAATGGGATTGGGCC
1 TATGAATATGATTGGGCC
72522531 AAAGGGGCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.02
28 65 0.98
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (28 bp):
TATGAATATGATTGGGCCTGATGGGCCA
Found at i:72522538 original size:28 final size:28
Alignment explanation
Indices: 72522451--72522546 Score: 120
Period size: 28 Copynumber: 3.4 Consensus size: 28
72522441 TGGGCTTGAC
* **
72522451 GGGCCATATGAAAGTGATTGGGCCTGAT
1 GGGCCATATGAATGTGATTGGGCCAAAT
**
72522479 GGGCCATATGAATGTGATTGGGCCCCAT
1 GGGCCATATGAATGTGATTGGGCCAAAT
* *
72522507 GGGCCATATGAATGGGATTGGGCCAAAG
1 GGGCCATATGAATGTGATTGGGCCAAAT
*
72522535 GGGCCAAATGAA
1 GGGCCATATGAA
72522547 GAAGTATGGA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.27, C:0.17, G:0.35, T:0.21
Consensus pattern (28 bp):
GGGCCATATGAATGTGATTGGGCCAAAT
Found at i:72526601 original size:25 final size:25
Alignment explanation
Indices: 72526567--72526616 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
72526557 GACACCTAGG
*
72526567 TTTTAACCCACTTATCACAAAAAGC
1 TTTTAACCCACTTATAACAAAAAGC
*
72526592 TTTTAACCCACTTATAATAAAAAGC
1 TTTTAACCCACTTATAACAAAAAGC
72526617 CTACCTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.24, G:0.04, T:0.30
Consensus pattern (25 bp):
TTTTAACCCACTTATAACAAAAAGC
Found at i:72536493 original size:29 final size:29
Alignment explanation
Indices: 72536460--72536515 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
72536450 CCATCACACC
72536460 AATATCGCAGCACAGCTGCCAGTAATAAT
1 AATATCGCAGCACAGCTGCCAGTAATAAT
* * * *
72536489 AATATCTCAGCATAGTTGCTAGTAATA
1 AATATCGCAGCACAGCTGCCAGTAATA
72536516 GTAAGTGTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (29 bp):
AATATCGCAGCACAGCTGCCAGTAATAAT
Found at i:72541887 original size:47 final size:47
Alignment explanation
Indices: 72541833--72542026 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
72541823 TTAGGATTTT
** * *
72541833 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72541880 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72541927 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
72541974 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72542021 ATGTGA
1 ATGTGA
72542027 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72541933 original size:22 final size:22
Alignment explanation
Indices: 72541862--72541933 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
72541852 GTATATATGA
72541862 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
72541884 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
72541909 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
72541931 GAT
1 GAT
72541934 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:72541982 original size:25 final size:25
Alignment explanation
Indices: 72541907--72541982 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
72541897 ATGCATATAT
72541907 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
72541932 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
72541954 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
72541979 GTGA
1 GTGA
72541983 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:72542154 original size:98 final size:96
Alignment explanation
Indices: 72541997--72542180 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
72541987 GAACATGCAT
*
72541997 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
72542062 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
** *
72542093 ATATGTGGTAAAGCTTAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
*
72542157 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
72542181 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.31
97 2 0.03
98 52 0.65
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:72542196 original size:50 final size:48
Alignment explanation
Indices: 72541996--72542180 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
72541986 TGAACATGCA
*
72541996 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72542044 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* ** *
72542092 CATATGTGGTAAAGCTTAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
72542142 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72542181 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72542508 original size:37 final size:37
Alignment explanation
Indices: 72542329--72542508 Score: 306
Period size: 37 Copynumber: 4.9 Consensus size: 37
72542319 AATATATTCT
*
72542329 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* * *
72542366 GGCTCAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
72542403 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
72542440 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
72542477 GGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
72542509 CGTGTAATAC
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:72543890 original size:27 final size:27
Alignment explanation
Indices: 72543860--72544037 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72543850 ATATTGAGTC
* * * *
72543860 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72543887 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72543914 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72543942 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72543969 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72543996 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72544023 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72544038 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72543999 original size:82 final size:81
Alignment explanation
Indices: 72543881--72544036 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72543871 TGCTATATAA
* *
72543881 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72543946 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72543963 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72544027 CACTTAGTGC
65 CACTTAGTGC
72544037 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72551954 original size:27 final size:27
Alignment explanation
Indices: 72551924--72552101 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72551914 ATATTGAGTC
* * * *
72551924 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72551951 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72551978 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72552006 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72552033 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72552060 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72552087 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72552102 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72552063 original size:82 final size:81
Alignment explanation
Indices: 72551945--72552100 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72551935 TGCTATATAA
* *
72551945 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72552010 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72552027 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72552091 CACTTAGTGC
65 CACTTAGTGC
72552101 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72570547 original size:40 final size:40
Alignment explanation
Indices: 72570264--72570535 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
72570254 GAAAATTGAG
*
72570264 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72570304 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72570344 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72570384 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72570424 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
72570464 AGTGATGTATCCGAACTAAGTTCCGAAGAGCATTCGTTCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
72570504 GGTGTTATATCCGGGCTAGGTCCCAAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
72570536 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72574575 original size:47 final size:47
Alignment explanation
Indices: 72574521--72574714 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
72574511 TTAGGATTTT
** * *
72574521 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
72574568 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
* * * *
72574615 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
* * * * * *
72574662 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
72574709 ATGTGA
1 ATGTGA
72574715 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCA
Found at i:72574621 original size:22 final size:22
Alignment explanation
Indices: 72574550--72574621 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
72574540 GTATATATGA
72574550 GATAAGGCCGAATGACCAATGT
1 GATAAGGCCGAATGACCAATGT
* * *
72574572 GATGAATG-TGAACATG-CATATATGT
1 GAT-AAGGCCG-A-ATGAC-CA-ATGT
72574597 GATAAGGCCGAATGACCAATGT
1 GATAAGGCCGAATGACCAATGT
72574619 GAT
1 GAT
72574622 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGACCAATGT
Found at i:72574843 original size:98 final size:96
Alignment explanation
Indices: 72574685--72574868 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
72574675 GAACATGCAT
*
72574685 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
72574750 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
72574781 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
*
72574845 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
72574869 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:72574884 original size:50 final size:48
Alignment explanation
Indices: 72574684--72574868 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
72574674 TGAACATGCA
*
72574684 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72574732 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
72574780 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
72574830 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72574869 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72575196 original size:37 final size:37
Alignment explanation
Indices: 72575014--72575196 Score: 312
Period size: 37 Copynumber: 4.9 Consensus size: 37
72575004 GGAAATATAT
*
72575014 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
72575051 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
72575088 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
72575125 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
72575162 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
72575197 CGTCTGAGCT
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:72589036 original size:13 final size:14
Alignment explanation
Indices: 72589003--72589040 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
72588993 AATGCAAGTG
72589003 TACTATATTCCATAT
1 TACTAT-TTCCATAT
*
72589018 TGCTATTTCCATA-
1 TACTATTTCCATAT
72589031 TACTATTTCC
1 TACTATTTCC
72589041 TCCATATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.43
14 7 0.33
15 5 0.24
ACGTcount: A:0.26, C:0.24, G:0.03, T:0.47
Consensus pattern (14 bp):
TACTATTTCCATAT
Found at i:72594052 original size:34 final size:34
Alignment explanation
Indices: 72594014--72594095 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
72594004 TCTGGGTCCA
* *
72594014 AGCCC-TTATCAGTAGCAATACCAGTGTGTGCCTT
1 AGCCCATTA-CAGTAACAATACCAGTGTGGGCCTT
* * *
72594048 AGCCCATTACGGTAACAGTATCAGTGTGGGCCTT
1 AGCCCATTACAGTAACAATACCAGTGTGGGCCTT
72594082 AGCCCAATT-CAGTA
1 AGCCC-ATTACAGTA
72594096 CAGTATTAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 34 0.85
35 6 0.15
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (34 bp):
AGCCCATTACAGTAACAATACCAGTGTGGGCCTT
Found at i:72594380 original size:26 final size:27
Alignment explanation
Indices: 72594350--72594408 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
72594340 ATGCTCGAAT
*
72594350 ACAGTCAAATATAGCA-TAGGGGTATA
1 ACAGTCAAATATACCACTAGGGGTATA
* * *
72594376 TCAGTC-ATTTTACCACTAGGGGTATA
1 ACAGTCAAATATACCACTAGGGGTATA
72594402 ACAGTCA
1 ACAGTCA
72594409 TTTCATCAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
ACAGTCAAATATACCACTAGGGGTATA
Found at i:72608986 original size:16 final size:18
Alignment explanation
Indices: 72608951--72608987 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
72608941 ATAAATACAT
72608951 ATATAAAACAAATGTAATA
1 ATATAAAACAAA-GTAATA
72608970 ATATAAAA-AAA-TAATA
1 ATATAAAACAAAGTAATA
72608986 AT
1 AT
72608988 GTAGTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (18 bp):
ATATAAAACAAAGTAATA
Found at i:72611846 original size:27 final size:26
Alignment explanation
Indices: 72611816--72611878 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
72611806 ATTTACTAAA
72611816 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCT-AG-ATGCAAAATTACCACT
* *
72611843 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCACT
*
72611869 ATACCGCTAG
1 ATACCCCTAG
72611879 GGTTAGTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCACT
Found at i:72612025 original size:28 final size:27
Alignment explanation
Indices: 72611982--72612069 Score: 124
Period size: 28 Copynumber: 3.2 Consensus size: 27
72611972 GGAGGAAGCA
*
72611982 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCACAAATATCTG
72612009 ATTCTGGTGGCTCTGCCACAAATATCTG
1 -TTCTGGTGGCTCTGCCACAAATATCTG
* *
72612037 TATCTGGTGACTCTGTCAC-AATATCTG
1 T-TCTGGTGGCTCTGCCACAAATATCTG
72612064 TTCTGG
1 TTCTGG
72612070 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.09
27 10 0.18
28 41 0.73
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTG
Found at i:72616479 original size:27 final size:27
Alignment explanation
Indices: 72616449--72616510 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
72616439 ATTTACTAAA
72616449 ATACCCCTAAGTAT-AAAAATTACCACT
1 ATACCCCTAAG-ATGAAAAATTACCACT
* *
72616476 ATACCCCT-AGATGCAAAATTACCATT
1 ATACCCCTAAGATGAAAAATTACCACT
72616502 ATACCCCTA
1 ATACCCCTA
72616511 GGGTTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.40, C:0.29, G:0.05, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGAAAAATTACCACT
Found at i:72616658 original size:28 final size:28
Alignment explanation
Indices: 72616614--72616730 Score: 168
Period size: 28 Copynumber: 4.2 Consensus size: 28
72616604 TGGAGGATGC
*
72616614 ATTCTGGTGGCTATGCCACAAATATCTG
1 ATTCTGGTGGCTCTGCCACAAATATCTG
*
72616642 ATTTTGGTGGCTCTGCCACAAATATCTG
1 ATTCTGGTGGCTCTGCCACAAATATCTG
72616670 ATTCTGGTGGCTCTGCCACAAATATCTG
1 ATTCTGGTGGCTCTGCCACAAATATCTG
* *
72616698 -TATCTGGTGACTCTGTCAC-AATATCTG
1 AT-TCTGGTGGCTCTGCCACAAATATCTG
72616725 -TTCTGG
1 ATTCTGG
72616731 CAGCCATGCT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
26 5 0.06
27 10 0.12
28 68 0.82
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (28 bp):
ATTCTGGTGGCTCTGCCACAAATATCTG
Found at i:72616826 original size:28 final size:28
Alignment explanation
Indices: 72616780--72616844 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
72616770 TGGAGGATGC
* *
72616780 ATTCTAGTGGCTATGCCACAAATATCTG
1 ATTCTGGTGGCTATACCACAAATATCTG
*
72616808 ATTCTGGTGGCTCTACCACAAATATCTG
1 ATTCTGGTGGCTATACCACAAATATCTG
72616836 -TATCTGGTG
1 AT-TCTGGTG
72616845 ACCCTGTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (28 bp):
ATTCTGGTGGCTATACCACAAATATCTG
Found at i:72616855 original size:28 final size:28
Alignment explanation
Indices: 72616795--72616868 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
72616785 AGTGGCTATG
* *
72616795 CCACAAATATCTG-ATTCTGGTGGCTCTA
1 CCACAAATATCTGTA-TCTGGTGACCCTA
*
72616823 CCACAAATATCTGTATCTGGTGACCCTG
1 CCACAAATATCTGTATCTGGTGACCCTA
*
72616851 TCAC-AATATCTGT-TCTGG
1 CCACAAATATCTGTATCTGG
72616869 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.12
27 9 0.22
28 26 0.63
29 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (28 bp):
CCACAAATATCTGTATCTGGTGACCCTA
Found at i:72618641 original size:55 final size:54
Alignment explanation
Indices: 72618502--72618705 Score: 203
Period size: 53 Copynumber: 3.8 Consensus size: 54
72618492 TTCCTTTTTA
* * * ** *
72618502 AACTTACCATTTCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * * * *
72618555 AACTCACCATTGCGATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
** * * * * * *
72618609 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTTTTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* *
72618664 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
72618706 CTTAAACCCT
Statistics
Matches: 118, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 43 0.36
54 34 0.29
55 41 0.35
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:72621545 original size:80 final size:81
Alignment explanation
Indices: 72621399--72621548 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 81
72621389 GATATTCAGG
* * * *
72621399 CTTTGAGCCTAGTAAGCCTTGTGCTGGTGAATTTGATCAGGCTTTATGCCTAGCAGGCTTATTGC
1 CTTTGAGCCTAGCAAGCCTTGTGCTAGTG-ATGTGATCAGGCTTTAGGCCTAGCAGGCTTATTGC
72621464 CAGTGTATAAAATCAAA
65 CAGTGTATAAAATCAAA
* *
72621481 CTTTGAGTCTAGCAGGCCTTGTGCTAGTG-TGTGATACAGGC-TTAGGCCTAGCAGGCTT-TATG
1 CTTTGAGCCTAGCAAGCCTTGTGCTAGTGATGTGAT-CAGGCTTTAGGCCTAGCAGGCTTAT-TG
72621543 CCAGTG
64 CCAGTG
72621549 AATTATTATA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
79 1 0.02
80 29 0.48
81 5 0.08
82 25 0.42
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (81 bp):
CTTTGAGCCTAGCAAGCCTTGTGCTAGTGATGTGATCAGGCTTTAGGCCTAGCAGGCTTATTGCC
AGTGTATAAAATCAAA
Found at i:72632272 original size:46 final size:46
Alignment explanation
Indices: 72632222--72632397 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
72632212 TGGTTGAGCA
*
72632222 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72632268 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
72632313 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72632361 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72632398 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72636755 original size:44 final size:44
Alignment explanation
Indices: 72636692--72636779 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
72636682 ATTGTTTCAA
*
72636692 TTTCACACCACTCTAGAACATTCCAATTCCACATTACTGAAATG
1 TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
* *
72636736 TTTCACACCACGCTAGAACATTCCAATTCCGCATTATTGAAATG
1 TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
72636780 AACTTAATGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (44 bp):
TTTCACACCACGCTAGAACATTCCAATTCCACATTACTGAAATG
Found at i:72640677 original size:28 final size:29
Alignment explanation
Indices: 72640590--72640665 Score: 113
Period size: 28 Copynumber: 2.7 Consensus size: 29
72640580 ACATACATGC
*
72640590 ATATGGCCCA-CTAGGCCTAATCTCATTT
1 ATATGGCCCATCTAGGCCCAATCTCATTT
*
72640618 ATATGGCCCAT-TAGGCCCAATTTCATTT
1 ATATGGCCCATCTAGGCCCAATCTCATTT
72640646 ATATGGCCCATCT-GGCCCAA
1 ATATGGCCCATCTAGGCCCAA
72640666 ATCGCATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 43 0.98
29 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCTCATTT
Found at i:72640781 original size:19 final size:19
Alignment explanation
Indices: 72640754--72640790 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72640744 ACACCCATCG
72640754 GGCCCATTTAGCCCATTCT
1 GGCCCATTTAGCCCATTCT
* *
72640773 GGCCTATTTGGCCCATTC
1 GGCCCATTTAGCCCATTC
72640791 ACAACCCAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.14, C:0.35, G:0.19, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCCATTCT
Found at i:72640978 original size:28 final size:30
Alignment explanation
Indices: 72640901--72640996 Score: 101
Period size: 29 Copynumber: 3.3 Consensus size: 30
72640891 CGGCATTACA
* *
72640901 AATTCACGTTCAT-GTGGCCCATTAGGCCC
1 AATTCACATTCATAATGGCCCATTAGGCCC
72640930 AATTCACATTCATAAT-GCCCATTAGGCCC
1 AATTCACATTCATAATGGCCCATTAGGCCC
* * **
72640959 AA-TCTCATTTAT-ATGGCCCATCCGGCCC
1 AATTCACATTCATAATGGCCCATTAGGCCC
*
72640987 AAATCACATT
1 AATTCACATT
72640997 ATATTCATGC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 2 0.04
28 21 0.37
29 33 0.58
30 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (30 bp):
AATTCACATTCATAATGGCCCATTAGGCCC
Found at i:72640998 original size:28 final size:28
Alignment explanation
Indices: 72640915--72641000 Score: 95
Period size: 28 Copynumber: 3.0 Consensus size: 28
72640905 CACGTTCATG
*
72640915 TGGCCCATTAGGCCCAATTCACATTCATAA
1 TGGCCCATTAGGCCCAAATCACATT-AT-A
*
72640945 T-GCCCATTAGGCCC-AATCTCATTTATA
1 TGGCCCATTAGGCCCAAATCACA-TTATA
**
72640972 TGGCCCATCCGGCCCAAATCACATTATA
1 TGGCCCATTAGGCCCAAATCACATTATA
72641000 T
1 T
72641001 TCATGCTCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 2 0.04
28 24 0.50
29 21 0.44
30 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:72641102 original size:19 final size:19
Alignment explanation
Indices: 72641069--72641114 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
72641059 TGGGCCCAAC
*
72641069 AGCCCATT-GGGCCCACTT
1 AGCCCATTCCGGCCCACTT
*
72641087 AGCCCATTCCGGCCCATTT
1 AGCCCATTCCGGCCCACTT
*
72641106 GGCCCATTC
1 AGCCCATTC
72641115 ACAACCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.15, C:0.41, G:0.20, T:0.24
Consensus pattern (19 bp):
AGCCCATTCCGGCCCACTT
Found at i:72642496 original size:16 final size:16
Alignment explanation
Indices: 72642472--72642502 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72642462 AAAATAAGAT
72642472 TTCGGGATTTTTGGGC
1 TTCGGGATTTTTGGGC
*
72642488 TTCGTGATTTTTGGG
1 TTCGGGATTTTTGGG
72642503 GTGTTACAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.10, G:0.35, T:0.48
Consensus pattern (16 bp):
TTCGGGATTTTTGGGC
Found at i:72648713 original size:28 final size:28
Alignment explanation
Indices: 72648666--72648805 Score: 115
Period size: 29 Copynumber: 4.9 Consensus size: 28
72648656 TACATACATG
*
72648666 CATATAGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATC-AGGCCCAAT-TCACTT
* * *
72648694 TATATGGCCCATCCGACCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* *
72648723 CATGTGGACCATCAGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* *
72648752 CATATGACCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
* * *
72648780 TATATGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATCAGGCCCAATTCAC
72648806 ATTATATTCA
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
27 6 0.07
28 35 0.39
29 45 0.51
30 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.25
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACTT
Found at i:72648915 original size:19 final size:19
Alignment explanation
Indices: 72648891--72648927 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
72648881 AGCCCATCGG
72648891 GCCCATTTAGCCCATTCAT
1 GCCCATTTAGCCCATTCAT
*
72648910 GCCCATTTGGCCCATTCA
1 GCCCATTTAGCCCATTCA
72648928 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.38, G:0.14, T:0.30
Consensus pattern (19 bp):
GCCCATTTAGCCCATTCAT
Found at i:72656966 original size:40 final size:40
Alignment explanation
Indices: 72656920--72657106 Score: 222
Period size: 39 Copynumber: 4.7 Consensus size: 40
72656910 ACTACTTGCT
72656920 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
72656960 CAAATGCCTTCGGGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * * *
72656999 CCAATGCCTTCCGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
72657039 CAATTGCCTTCGGG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
72657078 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72657107 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 64 0.51
40 56 0.45
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72657023 original size:79 final size:78
Alignment explanation
Indices: 72656920--72657106 Score: 234
Period size: 79 Copynumber: 2.4 Consensus size: 78
72656910 ACTACTTGCT
* *
72656920 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCAGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
*
72656984 G-TTCAATAACTCGCA
64 GATT-AATAACTAGCA
* * * * *
72656999 CCAATGCCTTCCGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGGA
1 CAAATGCCTTCAGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGG-
* *
72657064 ATTAGTCACTAGCA
65 ATTAATAACTAGCA
72657078 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCAGGACTTAGCCCGGTTAT
72657107 CATCCGAATA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 9 0.10
79 81 0.87
80 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCAGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
TTAATAACTAGCA
Found at i:72661551 original size:206 final size:206
Alignment explanation
Indices: 72661188--72661943 Score: 1117
Period size: 206 Copynumber: 3.7 Consensus size: 206
72661178 TAGATCTGGC
* *
72661188 TGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAGTCAAAGACATAGCTG
1 TGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTG
*
72661253 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCGAAGATGATTTGGCATCTCTATATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGA
* * * *
72661318 GAACAAATCAAAGTTTGGCCTCTCCATATTCGACAAAGAGCATACACATAGTAGATCTGGCCTTC
130 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACAAAGAGCAAACACATAGCAGATCTGGCCTTC
72661383 ATATGTTTACAT
195 ATATGTTTACAT
* * *
72661395 TGAAGCATATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAA-TCATAGCTA
1 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATC-AAAGACATAGCTG
* *
72661459 ATTTGGCTTTTACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
65 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGA
* ** *
72661524 GAACAAATCGAATTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTC
130 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACAAAGAGCAAACACATAGCAGATCTGGCCTTC
72661589 ATATGTTTACAT
195 ATATGTTTACAT
* * *
72661601 CGAAGCAGATCCAAGATGATTT-GCAATCCTTGTGTTTACAAGGAACAAATCGAAA-TCATAGCT
1 TGAAGCAGATCCAAGATGATTTGGC-ATCCTTGTGCTTACAAGGAACAAATC-AAAGACATAGCT
* *
72661664 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGCCAG
64 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAG
* **
72661729 AGAACAAATTGAAGTTTGGCGTCTCCATATTCGACAGAAG-GCAAACACATAGCAGATCTAACCT
129 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACA-AAGAGCAAACACATAGCAGATCTGGCCT
* * * *
72661793 TCAGATGATTAGAC
193 TCATATGTTTACAT
* * *
72661807 TGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGCTGA
1 TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGA
* * * *
72661872 TTT-GTTTTCGCGTGCTTATGTTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAG
66 TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAG
72661936 AACAAATC
131 AACAAATC
72661944 AAAGAAGCAG
Statistics
Matches: 499, Mismatches: 45, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
205 67 0.13
206 420 0.84
207 12 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (206 bp):
TGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGA
TTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAG
AACAAATCGAAGTTTGGCGTCTCCATATTCGACAAAGAGCAAACACATAGCAGATCTGGCCTTCA
TATGTTTACAT
Found at i:72669695 original size:79 final size:81
Alignment explanation
Indices: 72669558--72669739 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
72669548 CGAATGATGT
* * *
72669558 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
72669622 TTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * * **
72669638 CTGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
72669700 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
72669717 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
72669740 TGAACGAGTA
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.66
80 28 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:72669748 original size:40 final size:40
Alignment explanation
Indices: 72669557--72669741 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
72669547 TCGAATGATG
* * *
72669557 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
72669597 TCCGGACTAAGAT-CTGAAGGCATTTTTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72669637 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72669676 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72669717 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72669742 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 32 0.26
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72669763 original size:79 final size:79
Alignment explanation
Indices: 72669612--72669774 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 79
72669602 ACTAAGATCT
* * * **
72669612 GAAGGCATTTTTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
*
72669677 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
72669691 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
72669754 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
72669770 GAAGG
1 GAAGG
72669775 TACGTGATTT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.63
80 24 0.34
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:72671192 original size:47 final size:47
Alignment explanation
Indices: 72671123--72671344 Score: 345
Period size: 47 Copynumber: 4.7 Consensus size: 47
72671113 GGGTGTTACA
* *
72671123 GCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
* *
72671170 GCATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
* *
72671217 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
* *
72671264 GCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACAT
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
* * *
72671311 GCATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 GCATATATGTGATAAGGCCGAATGGCCAATGTGA
72671345 AATATATATA
Statistics
Matches: 160, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 160 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
Found at i:72671300 original size:25 final size:25
Alignment explanation
Indices: 72671225--72671300 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
72671215 ATGCATATAT
72671225 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
72671250 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
72671272 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
72671297 GTGA
1 GTGA
72671301 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:72671395 original size:94 final size:91
Alignment explanation
Indices: 72671123--72671400 Score: 290
Period size: 94 Copynumber: 2.9 Consensus size: 91
72671113 GGGTGTTACA
* * * * *
72671123 GCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGC
1 GCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATG--TATATGTGGTAAGGC
*
72671188 CGAATGGCCTATGTGATGAATGTGAACAT
64 CGAATGGCCTATGTG-TGAATATGAACAT
* * *
72671217 GCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGC
1 GCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTG-G-TAAGGC
*
72671282 CGAATGGCCAATGTGGTGAATATGAACAT
64 CGAATGGCCTATGT-GTGAATATGAACAT
* * * *
72671311 GCATATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAA
1 GCATATATGTGATAAAGCCGAATGGCCAATGTG--AT-GA-ATATGAG-CATGTATATGTGGTAA
* *
72671376 AGCTGAATGG-CTA-GTGTGAAATATG
61 GGCCGAATGGCCTATGTGTG-AATATG
72671401 TAGGCGATGT
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
92 7 0.04
94 108 0.69
95 9 0.06
96 4 0.03
97 12 0.08
98 7 0.04
99 10 0.06
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (91 bp):
GCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTGGTAAGGCCG
AATGGCCTATGTGTGAATATGAACAT
Found at i:72671613 original size:36 final size:37
Alignment explanation
Indices: 72671549--72671697 Score: 210
Period size: 37 Copynumber: 4.1 Consensus size: 37
72671539 GGAAATATAT
* *
72671549 TCCGGGTGAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72671586 TCCGGGTAAGACCCGA-GACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
72671622 CCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
72671659 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
72671696 TC
1 TC
72671698 TGAGCTAAAG
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
36 33 0.33
37 68 0.67
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72673459 original size:34 final size:34
Alignment explanation
Indices: 72673411--72673475 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
72673401 ACGGATACGA
*
72673411 GTTAAGGGTGATACACTACATACGTTCCACACGG
1 GTTAAGGGTAATACACTACATACGTTCCACACGG
* *
72673445 GTTAAGGGTAATACACTACGTATGTTCCACA
1 GTTAAGGGTAATACACTACATACGTTCCACA
72673476 TTCTCTCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
GTTAAGGGTAATACACTACATACGTTCCACACGG
Found at i:72676312 original size:24 final size:24
Alignment explanation
Indices: 72676279--72676376 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
72676269 AAGGCTATCA
72676279 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
72676303 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
72676327 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
72676351 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
72676376 G
1 G
72676377 AGCAGGAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:72687433 original size:29 final size:29
Alignment explanation
Indices: 72687352--72687451 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 29
72687342 GCCCATCCCC
* *
72687352 AATCATATTCATATGGCTCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGGCCCA
* *
72687381 AATCACCTGT-ATATGGCCTATTAGGCCCA
1 AATCACAT-TCATATGGCCCATTAGGCCCA
* * * *
72687410 AATCACATTTATATGGCCCGTTAGTCGC-
1 AATCACATTCATATGGCCCATTAGGCCCA
72687438 AATCACATTCATAT
1 AATCACATTCATAT
72687452 TCATGCTCAC
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
28 14 0.24
29 44 0.75
30 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (29 bp):
AATCACATTCATATGGCCCATTAGGCCCA
Found at i:72688758 original size:21 final size:21
Alignment explanation
Indices: 72688731--72688791 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
72688721 TATAATGAGT
72688731 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
72688752 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
72688773 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
72688792 ATAATAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:72688785 original size:10 final size:11
Alignment explanation
Indices: 72688717--72688791 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
72688707 ACCCAATCCA
*
72688717 TGCATATAATG
1 TGCATATCATG
* *
72688728 AGTATATCAT-
1 TGCATATCATG
*
72688738 AGCATATCATG
1 TGCATATCATG
*
72688749 TGCATCTCAT-
1 TGCATATCATG
**
72688759 AACATATCATG
1 TGCATATCATG
*
72688770 TGCATATTATG
1 TGCATATCATG
72688781 T-CATATCATG
1 TGCATATCATG
72688791 T
1 T
72688792 ATAATAATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:72689039 original size:14 final size:14
Alignment explanation
Indices: 72689020--72689047 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72689010 AACCCCTAAT
72689020 GGGCCCTACGAATG
1 GGGCCCTACGAATG
72689034 GGGCCCTACGAATG
1 GGGCCCTACGAATG
72689048 CCGATTTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.36, T:0.14
Consensus pattern (14 bp):
GGGCCCTACGAATG
Found at i:72697243 original size:16 final size:16
Alignment explanation
Indices: 72697222--72697252 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72697212 ACTTTTAGCT
72697222 TTTCGGCATTTCAGCA
1 TTTCGGCATTTCAGCA
*
72697238 TTTCGGGATTTCAGC
1 TTTCGGCATTTCAGC
72697253 TTTTGTCGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (16 bp):
TTTCGGCATTTCAGCA
Found at i:72699412 original size:42 final size:43
Alignment explanation
Indices: 72699351--72699456 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
72699341 TGAGATTTAT
* * * *
72699351 GTGTAAGAACATGTTTGGGACA-TCGGCATC-ATATTTGATTTC
1 GTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTAC
72699393 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
*
72699436 ATGTAAGACCAC-GTCTGGGAC
1 GTGTAAGACC-CTGTCTGGGAC
72699457 TTGGTATTGG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
42 25 0.45
43 30 0.54
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
Found at i:72702812 original size:44 final size:44
Alignment explanation
Indices: 72702755--72702917 Score: 170
Period size: 46 Copynumber: 3.6 Consensus size: 44
72702745 GTTCCAACGT
*
72702755 ATGTCCCAGACATATCTTACACTAGCACATCTCGTAGCCGATGC
1 ATGTCCCAAACATATCTTACACTAGCACATCTCGTAGCCGATGC
* *
72702799 ATGTCCCAAACATATCTTACACTGGCTTACATCTCGT-GACTGATGC
1 ATGTCCCAAACATATCTTACACTAGC--ACATCTCGTAG-CCGATGC
* * *
72702845 ATGTCCCAGACATGTCTTACACTGGCAC-TCGTC-TCAATGCCGATGTC
1 ATGTCCCAAACATATCTTACACTAGCACATC-TCGT--A-GCCGATG-C
72702892 ATGTCCCAAACATAGTCTTACACTAG
1 ATGTCCCAAACATA-TCTTACACTAG
72702918 TGTTCATAAT
Statistics
Matches: 100, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
43 3 0.03
44 28 0.28
45 1 0.01
46 44 0.44
47 14 0.14
48 10 0.10
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (44 bp):
ATGTCCCAAACATATCTTACACTAGCACATCTCGTAGCCGATGC
Done.