Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 229 of 318
Found at i:72702947 original size:94 final size:90
Alignment explanation
Indices: 72702755--72702964 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 90
72702745 GTTCCAACGT
*
72702755 ATGTCCCAGACATATCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAAACATATCTTACA
1 ATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAAACATATCTTACA
* * **
72702820 CTGGCTTACATCTCGTGACTGATGC
66 CTGGCTTACATATCATGACCAATGC
*
72702845 ATGTCCCAGACATGTCTTACACTGGCAC-TCGTC-TCAATGCCGATGTCATGTCCCAAACATAGT
1 ATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATG-CATGTCCCAAACATA-T
*
72702908 CTTACACTAGTG-TT-CATAAT-ATGGCCAATGC
60 CTTACACT-G-GCTTACAT-ATCATGACCAATGC
72702939 ATGTCCCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
72702965 TCACATAACA
Statistics
Matches: 103, Mismatches: 8, Indels: 14
0.82 0.06 0.11
Matches are distributed among these distances:
89 3 0.03
90 28 0.27
91 1 0.01
92 7 0.07
93 15 0.15
94 44 0.43
95 4 0.04
96 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (90 bp):
ATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAAACATATCTTACA
CTGGCTTACATATCATGACCAATGC
Found at i:72702972 original size:46 final size:46
Alignment explanation
Indices: 72702755--72702971 Score: 165
Period size: 46 Copynumber: 4.7 Consensus size: 46
72702745 GTTCCAACGT
* * * *
72702755 ATGTCCCAGACATATCTTACACTAG--CACATCTCGTAGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCACATATCATGGCCGATGC
* * * * * * * *
72702799 ATGTCCCAAACATATCTTACACTGGCTTACATCTCGTGACTGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCACATATCATGGCCGATGC
* * * * *
72702845 ATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAAT-GCCGATGTC
1 ATGTCCCAGACATGTCTTACACTAGCTCACATATC-ATGGCCGATG-C
* ** *
72702892 ATGTCCCAAACATAGTCTTACACTAG-TGTTCATAAT-ATGGCCAATGC
1 ATGTCCCAGACAT-GTCTTACACTAGCT-CACAT-ATCATGGCCGATGC
72702939 ATGTCCCAGACATGTCTTACACTAGCTCACATA
1 ATGTCCCAGACATGTCTTACACTAGCTCACATA
72702972 ACAGCAATGT
Statistics
Matches: 139, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
44 23 0.17
45 1 0.01
46 64 0.46
47 30 0.22
48 20 0.14
49 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCACATATCATGGCCGATGC
Found at i:72709629 original size:27 final size:26
Alignment explanation
Indices: 72709594--72709705 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
72709584 AGCATGGCTG
* *
72709594 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
72709620 CCAGATACAGATAATAATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
72709648 CCAGAACAGAAAAATGTGGCAGAGCCA
1 CCAGAACAG-ATAATGTGGCAGAGCCA
* *
72709675 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
72709702 CCAG
1 CCAG
72709706 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:72709654 original size:54 final size:54
Alignment explanation
Indices: 72709594--72709705 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
72709584 AGCATGGCTG
* *
72709594 CCAGAACAG-ATAATGTGACAGAGTCACCAGATACAGATAATAATGGCAGAGCCA
1 CCAGAACAGAAAAATGTGACAGAGCCACCAGAT-CAGATAATAATGGCAGAGCCA
* ** *
72709648 CCAGAACAGAAAAATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAAAATGTGACAGAGCCACCAGATCAGATAATAATGGCAGAGCCA
72709702 CCAG
1 CCAG
72709706 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 31 0.61
55 20 0.39
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.14
Consensus pattern (54 bp):
CCAGAACAGAAAAATGTGACAGAGCCACCAGATCAGATAATAATGGCAGAGCCA
Found at i:72717347 original size:27 final size:26
Alignment explanation
Indices: 72717311--72717423 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
72717301 CAGCATGGCT
* *
72717311 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
72717337 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
72717365 ACCAGAACAGAAATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
72717392 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
72717419 ACCAG
1 ACCAG
72717424 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 53 0.69
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:72717375 original size:54 final size:54
Alignment explanation
Indices: 72717311--72717423 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
72717301 CAGCATGGCT
* *
72717311 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * *
72717365 ACCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
72717419 ACCAG
1 ACCAG
72717424 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:72721542 original size:39 final size:40
Alignment explanation
Indices: 72721441--72721664 Score: 255
Period size: 39 Copynumber: 5.7 Consensus size: 40
72721431 TTGAATGATG
* *
72721441 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
72721480 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
72721521 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72721560 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
72721599 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
72721638 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72721665 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 75 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:72721678 original size:40 final size:40
Alignment explanation
Indices: 72721442--72721664 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
72721432 TGAATGATGT
* * * *
72721442 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72721482 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
72721522 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-A
72721561 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
72721599 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
72721640 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72721665 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 74 0.46
40 78 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72721686 original size:79 final size:79
Alignment explanation
Indices: 72721494--72721697 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
72721484 GGACTAAGAT
** * * * *
72721494 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
72721558 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** *
72721572 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
72721636 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * * *
72721652 CCGAAGGCGTTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
72721698 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
78 37 0.34
79 48 0.44
80 24 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:72727001 original size:40 final size:40
Alignment explanation
Indices: 72726907--72727044 Score: 170
Period size: 40 Copynumber: 3.4 Consensus size: 40
72726897 ATTCTTGCAG
* * * **
72726907 ACTAAGTGCCTTATATAGCTGAAACTATCTCAGTCTCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCTCA-AATCGCAC
*
72726948 ACTAAGTGTCATATATAGCCGAAGCTAT-TCCAAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCT-CAAATCGCAC
* * *
72726988 ATTAAGTGCCATATATAGTCGAAGTTATCTCAAATCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCGCAC
72727028 ACTAAGTGCCATATATA
1 ACTAAGTGCCATATATA
72727045 TTCGAATCAT
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 57 0.68
41 27 0.32
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCGCAC
Found at i:72729062 original size:93 final size:93
Alignment explanation
Indices: 72728954--72729124 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
72728944 GCCCATAAGT
* * *
72728954 GAACTCGGACTCAACTCAATGGGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72729019 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
72729047 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72729112 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72729125 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:72729121 original size:46 final size:46
Alignment explanation
Indices: 72728946--72729121 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
72728936 TGTAACCCGC
* * * *
72728946 CCATAAGTGAACTCGGACTCAACTCAATGGGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72728992 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
72729042 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72729085 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72729122 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72731666 original size:19 final size:18
Alignment explanation
Indices: 72731642--72731677 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
72731632 GCGGAAGCTT
72731642 AGGAAAACAGTTGTGTTTA
1 AGGAAAACAGTT-TGTTTA
*
72731661 AGGAAATCAGTTTGTTT
1 AGGAAAACAGTTTGTTT
72731678 GTTCAAAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (18 bp):
AGGAAAACAGTTTGTTTA
Found at i:72734509 original size:26 final size:26
Alignment explanation
Indices: 72734455--72734589 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
72734445 CTGGAGGCCT
*
72734455 AGCCTCTTTT-AAT-AACTGGGG-AAA
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
72734479 AGCCCTTTT-AGGTAAACTAGGGCATA
1 AGCCCTTTTCA-ATAAACTGGGGCATA
72734505 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
72734531 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
72734557 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
72734582 AGCCCTTT
1 AGCCCTTT
72734590 CGCACTTCCT
Statistics
Matches: 98, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
23 6 0.06
24 5 0.05
25 15 0.15
26 71 0.72
27 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:72734537 original size:52 final size:52
Alignment explanation
Indices: 72734455--72734589 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 52
72734445 CTGGAGGCCT
*
72734455 AGCCTCTTTT-AAT-AACTGGGG-AAAAGCCCTTTTAGGTAAACTAGGGCATA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTAGGTAAACTAGGGCATA
* *
72734505 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTAGGTAAACTAGGGCATA
72734557 AGCCCTTTTCAATAAACTGGGGCAT-AGCCCTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTT
72734590 CGCACTTCCT
Statistics
Matches: 79, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
49 5 0.06
50 7 0.09
51 16 0.20
52 51 0.65
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTAGGTAAACTAGGGCATA
Found at i:72734677 original size:29 final size:29
Alignment explanation
Indices: 72734640--72734702 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
72734630 TTATGATTAC
*
72734640 ATCATGTGCATTTCATA-CATATCATACAT
1 ATCATGTGCATATCATATCAT-TCATACAT
**
72734669 ATCATGTGCATATCATATCATTCATGTAT
1 ATCATGTGCATATCATATCATTCATACAT
72734698 ATCAT
1 ATCAT
72734703 ATCCCACGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (29 bp):
ATCATGTGCATATCATATCATTCATACAT
Found at i:72734701 original size:18 final size:20
Alignment explanation
Indices: 72734657--72734705 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
72734647 GCATTTCATA
72734657 CATATCATA-CATATCATGT
1 CATATCATATCATATCATGT
72734676 GCATATCATATCAT-TCATGT
1 -CATATCATATCATATCATGT
72734696 -ATATCATATC
1 CATATCATATC
72734706 CCACGTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.36
20 15 0.54
21 3 0.11
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (20 bp):
CATATCATATCATATCATGT
Found at i:72734759 original size:25 final size:25
Alignment explanation
Indices: 72734731--72734778 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72734721 ATAATTAAAC
* * *
72734731 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
72734756 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
72734779 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:72737759 original size:20 final size:21
Alignment explanation
Indices: 72737734--72737775 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
72737724 TGGAACGGTT
72737734 AATTTAA-TCAATTTAGCTTG
1 AATTTAATTCAATTTAGCTTG
* *
72737754 AATTTAATTCATTTTAGGTTG
1 AATTTAATTCAATTTAGCTTG
72737775 A
1 A
72737776 TTTCATTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (21 bp):
AATTTAATTCAATTTAGCTTG
Found at i:72741268 original size:27 final size:26
Alignment explanation
Indices: 72741212--72741268 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
72741202 CAACCTTAAC
* * *
72741212 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
72741238 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
72741265 CCTA
1 CCTA
72741269 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:72743594 original size:19 final size:18
Alignment explanation
Indices: 72743557--72743600 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
72743547 ATACATACAG
72743557 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
72743574 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
72743593 TACTAATT
1 TAATAATT
72743601 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:72750989 original size:29 final size:29
Alignment explanation
Indices: 72750929--72750996 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72750919 TAATCAACCA
*
72750929 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
72750958 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72750987 CGCACACTTA
1 CGCACACTTA
72750997 CCTTTTCCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72751163 original size:29 final size:29
Alignment explanation
Indices: 72751103--72751170 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72751093 TAATCAACCA
*
72751103 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
72751132 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72751161 CGCACACTTA
1 CGCACACTTA
72751171 CCTTTTCCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72751340 original size:29 final size:29
Alignment explanation
Indices: 72751277--72751344 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
72751267 TAATCAACCA
*
72751277 CGCACACTTAGTGCCATGGACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
72751306 CACACACTTAGTGCCATGCATTTTAAGTT
1 CGCACACTTAGTGCCATGCACTTTAAACT
72751335 CGCACACTTA
1 CGCACACTTA
72751345 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72751514 original size:29 final size:29
Alignment explanation
Indices: 72751451--72751518 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72751441 TAATCAACCA
72751451 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72751480 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72751509 CGCACACTTA
1 CGCACACTTA
72751519 CCTTTTTCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72751661 original size:29 final size:30
Alignment explanation
Indices: 72751627--72751698 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
72751617 ATCAACCACA
*
72751627 CACACTTAGTGCCATGTAC-TTTAAACTCG
1 CACACTTAGTGCCATGTACATTTAAACCCG
72751656 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCG
72751685 CACACTTAGTGCCA
1 CACACTTAGTGCCA
72751699 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCG
Found at i:72751692 original size:174 final size:174
Alignment explanation
Indices: 72750644--72751667 Score: 1922
Period size: 174 Copynumber: 5.9 Consensus size: 174
72750634 AACTCAAGGT
* * *
72750644 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
* *
72750709 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
72750774 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72750818 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
72750883 GAAAATATATATTGGGTTCACACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
72750948 ACTTTAAACTCGCACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72750992 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
72751057 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
72751122 ACTTTAAACTCGCACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72751166 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
72751231 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGG
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
72751296 ACTTTAAACTCACACACTTAGTGCCATGCATTTTAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72751340 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
72751405 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
72751470 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
72751514 ACTTACCTTTTTCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
72751579 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
72751644 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
72751668 TGTACAATTT
Statistics
Matches: 833, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 833 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:72759664 original size:29 final size:29
Alignment explanation
Indices: 72759601--72759668 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72759591 TAATCAACCA
72759601 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72759630 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72759659 CGCACACTTA
1 CGCACACTTA
72759669 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72759835 original size:29 final size:29
Alignment explanation
Indices: 72759775--72759842 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72759765 TAATCAACCA
*
72759775 CGCACACTTAGTGCCATGGACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
**
72759804 CGCACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72759833 CGCACACTTA
1 CGCACACTTA
72759843 CCTTTTCCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72760012 original size:29 final size:29
Alignment explanation
Indices: 72759949--72760016 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
72759939 TAATCAACCA
72759949 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
72759978 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
72760007 CGCACACTTA
1 CGCACACTTA
72760017 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:72760157 original size:29 final size:30
Alignment explanation
Indices: 72760118--72760196 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
72760108 CTTAATAATC
72760118 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
72760148 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
72760177 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72760197 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:72760190 original size:174 final size:174
Alignment explanation
Indices: 72759490--72760165 Score: 1289
Period size: 174 Copynumber: 3.9 Consensus size: 174
72759480 AACTCAAGGT
* * *
72759490 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
72759555 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
72759620 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72759664 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
72759729 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGG
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
72759794 ACTTTAAACTCGCACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72759838 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
72759903 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
72759968 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
72760012 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
72760077 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
72760142 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
72760166 TGTACAATTT
Statistics
Matches: 493, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 493 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:72773744 original size:19 final size:19
Alignment explanation
Indices: 72773708--72773746 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72773698 GGTCTAACAT
* *
72773708 AAAATTTAAAATTTTAAAA
1 AAAATGTAAAATTGTAAAA
*
72773727 AAAATGTAATATTGTAAAA
1 AAAATGTAAAATTGTAAAA
72773746 A
1 A
72773747 TCTTGGTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAATGTAAAATTGTAAAA
Found at i:72775946 original size:353 final size:353
Alignment explanation
Indices: 72775291--72775999 Score: 1089
Period size: 353 Copynumber: 2.0 Consensus size: 353
72775281 GAATTACTTA
* *
72775291 ATACACTAGAATTGATGCTTCTAGTAGAAAATCTAGATAAGCAAGATAGAGAGGAGAGTTTATCC
1 ATACACTAAAATTGATGCTTCTAGTAGAAAATCTAGATAAACAAGATAGAGAGGAGAGTTTATCC
* *
72775356 TTAATAGTTTGATATAATTGTACCGAGTAGTGAGATTGAGAGAAGAACAACTTGTCAAAGTGAGA
66 TTAACAGTTCGATATAATTGTACCGAGTAGTGAGATTGAGAGAAGAACAACTTGTCAAAGTGAGA
* * * * **
72775421 TTGAGAGAAAAACTTAGGTTGTAATTTCAAATTAGGATGAGACTGAAAGGAGATTCTAGTGAGGA
131 CTAAGAGAAAAACTTAGGTTGCAATTCCAAATTAGGATGAGACTGAAACAAGATTCTAGTGAGGA
** * * *
72775486 GTCACAAGTGATCTAATTGGGATAGGTTATTGGCTTAGTTAGTAATCGACTAATCAATCAACCAT
196 GTCACAAGCAATCTAATCGAGATAGGTTATTGGCTTAATTAGTAATCGACTAATCAATCAACCAT
* * *
72775551 CGTTTTTATCATTTGCATAGTCGAATACAATAGGAAGAAATCTTAGTTTAGGTAGTTTAATTGAT
261 CATTTTTATCATGTGCATAGTCGAATACAATAGGAAGAAATCTTAATTTAGGTAGTTTAATTGAT
72775616 AATTTAAAATTAGTCTCATTATATTTTC
326 AATTTAAAATTAGTCTCATTATATTTTC
* * *
72775644 ATACGCTAAAATTGATGCTTCTAGTGGAAAATCTAGATAAATAAGATAGAGAGGAGAGTTTATCC
1 ATACACTAAAATTGATGCTTCTAGTAGAAAATCTAGATAAACAAGATAGAGAGGAGAGTTTATCC
* * * *
72775709 TTAACAGTTCGATATAATTGTACTGGGTAGTGAGATTGAGAGAAGAACTACTTGTCTAAGTGAGA
66 TTAACAGTTCGATATAATTGTACCGAGTAGTGAGATTGAGAGAAGAACAACTTGTCAAAGTGAGA
* * * *
72775774 CTAAGAGAAGACCTTA-GTTGGCAATTCCGAATTAGGATGAGACT-AAGACAAGATTCTAGTGAT
131 CTAAGAGAAAAACTTAGGTT-GCAATTCCAAATTAGGATGAGACTGAA-ACAAGATTCTAGTGAG
** *
72775837 GAGTGGCAAGCAATCTAATCGAGATAGGTTATTGGCTTAATTAGTAATTGACTAATCAATCAACC
194 GAGTCACAAGCAATCTAATCGAGATAGGTTATTGGCTTAATTAGTAATCGACTAATCAATCAACC
72775902 ATCATTTTTATCATGTGCATAGTCGAATACAATAGGAAGAAATCTTAATTTAGGTAGTTTAATTG
259 ATCATTTTTATCATGTGCATAGTCGAATACAATAGGAAGAAATCTTAATTTAGGTAGTTTAATTG
*
72775967 ATAATTTAGAATTAGTCTCATTATATTTTC
324 ATAATTTAAAATTAGTCTCATTATATTTTC
72775997 ATA
1 ATA
72776000 TTTGGTTTGC
Statistics
Matches: 321, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
352 5 0.02
353 316 0.98
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (353 bp):
ATACACTAAAATTGATGCTTCTAGTAGAAAATCTAGATAAACAAGATAGAGAGGAGAGTTTATCC
TTAACAGTTCGATATAATTGTACCGAGTAGTGAGATTGAGAGAAGAACAACTTGTCAAAGTGAGA
CTAAGAGAAAAACTTAGGTTGCAATTCCAAATTAGGATGAGACTGAAACAAGATTCTAGTGAGGA
GTCACAAGCAATCTAATCGAGATAGGTTATTGGCTTAATTAGTAATCGACTAATCAATCAACCAT
CATTTTTATCATGTGCATAGTCGAATACAATAGGAAGAAATCTTAATTTAGGTAGTTTAATTGAT
AATTTAAAATTAGTCTCATTATATTTTC
Found at i:72777822 original size:46 final size:45
Alignment explanation
Indices: 72777769--72777944 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
72777759 TATTTGGGCA
*
72777769 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
72777815 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
72777862 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
72777908 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
72777945 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:72777924 original size:93 final size:93
Alignment explanation
Indices: 72777765--72777936 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
72777755 AGGATATTTG
* *
72777765 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
72777830 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
72777858 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
72777923 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72777937 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:72781060 original size:46 final size:47
Alignment explanation
Indices: 72780993--72781081 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 47
72780983 CTGGCATATT
72780993 AGATATATGTGGTCAAGCCACTAT-ATTACAATCAAGCTGCCATAAA
1 AGATATATGTGGTCAAGCCACTATAATTACAATCAAGCTGCCATAAA
* * * *
72781039 AGATATGTGTGGTCGAGCCACTATAATTGCAATCAAGTTGCCA
1 AGATATATGTGGTCAAGCCACTATAATTACAATCAAGCTGCCA
72781082 GGACAGATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
46 22 0.58
47 16 0.42
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (47 bp):
AGATATATGTGGTCAAGCCACTATAATTACAATCAAGCTGCCATAAA
Found at i:72781090 original size:47 final size:46
Alignment explanation
Indices: 72780993--72781094 Score: 132
Period size: 47 Copynumber: 2.2 Consensus size: 46
72780983 CTGGCATATT
* *
72780993 AGATATATGTGGTCAAGCCACTATATTACAATCAAGCTGCCATAAA
1 AGATATGTGTGGTCAAGCCACTATATTACAATCAAGCTGCCAGAAA
* * * * *
72781039 AGATATGTGTGGTCGAGCCACTATAATTGCAATCAAGTTGCCAGGAC
1 AGATATGTGTGGTCAAGCCACTAT-ATTACAATCAAGCTGCCAGAAA
72781086 AGATATGTG
1 AGATATGTG
72781095 GTTAAACCAC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 22 0.46
47 26 0.54
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (46 bp):
AGATATGTGTGGTCAAGCCACTATATTACAATCAAGCTGCCAGAAA
Found at i:72782070 original size:24 final size:23
Alignment explanation
Indices: 72782016--72782093 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 23
72782006 GGATAATTAA
**
72782016 GAAATGGTATTTGGTTTTGGTAC
1 GAAATGGTATTTGGAATTGGTAC
***
72782039 GTTTTGGTATTTGGGAATTGGTAC
1 GAAATGGTATTT-GGAATTGGTAC
*
72782063 GAAATGGTA--TGGAATTGGTAT
1 GAAATGGTATTTGGAATTGGTAC
*
72782084 GAAATAGTAT
1 GAAATGGTAT
72782094 GGTATTTGGT
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
21 18 0.42
22 1 0.02
23 9 0.21
24 15 0.35
ACGTcount: A:0.27, C:0.03, G:0.31, T:0.40
Consensus pattern (23 bp):
GAAATGGTATTTGGAATTGGTAC
Found at i:72782078 original size:21 final size:21
Alignment explanation
Indices: 72782052--72782118 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
72782042 TTGGTATTTG
72782052 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
72782073 GGAATTGGTATGAAATAGTAT
1 GGAATTGGTACGAAATGGTAT
* *
72782094 GGTATTTGGTACGAATTGGTTAT
1 GG-AATTGGTACGAAATGG-TAT
72782117 GG
1 GG
72782119 TTCAAAGAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 21 0.55
22 12 0.32
23 5 0.13
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.34
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:72784167 original size:54 final size:54
Alignment explanation
Indices: 72784107--72784211 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
72784097 GTAAGAGGGA
*
72784107 ATAAAAATGTTTCCATTTTACACACATAGAAGATTCGAAAATGAGACCTCTGGG
1 ATAAAAATATTTCCATTTTACACACATAGAAGATTCGAAAATGAGACCTCTGGG
* * * *
72784161 ATAAAAATATTTCCATTTTATACACATAGAATATTCGAACATGGGACCTCT
1 ATAAAAATATTTCCATTTTACACACATAGAAGATTCGAAAATGAGACCTCT
72784212 AGGTAAGCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (54 bp):
ATAAAAATATTTCCATTTTACACACATAGAAGATTCGAAAATGAGACCTCTGGG
Found at i:72787177 original size:48 final size:46
Alignment explanation
Indices: 72787045--72787220 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
72787035 TCAACTCGTA
* *
72787045 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCCCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCCCAAG
** * * *
72787091 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCCCAAG
* *****
72787137 GCCGATGCCATGTCCCAGACATGGGCTTACACTGGCTCTCGTAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCCCAAG
* * *
72787185 GCCAATACATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
72787221 ACAATAATCT
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 55 0.52
47 29 0.27
48 22 0.21
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCCCAAG
Found at i:72792390 original size:35 final size:34
Alignment explanation
Indices: 72792289--72792427 Score: 91
Period size: 35 Copynumber: 4.0 Consensus size: 34
72792279 TCACGTATGG
* * * * * *
72792289 CCGAATATGCATATTTAAGATAACTTCACATATAT
1 CCGAATATACAAATTCAATATAACTT-ACATGTAA
* ** *
72792324 CCGAGTATACATTTTCAATATAAGTTCACATGTAA
1 CCGAATATACAAATTCAATATAACTT-ACATGTAA
* * *
72792359 TCGAATACTA-AAATTCAATATAACCTTACATGCAG
1 CCGAATA-TACAAATTCAATATAA-CTTACATGTAA
* *
72792394 CCGAATATACAAGTTCAAAATAAGCTTACATGTA
1 CCGAATATACAAATTCAATATAA-CTTACATGTA
72792428 CTTACCTGTG
Statistics
Matches: 81, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
34 2 0.02
35 75 0.93
36 4 0.05
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (34 bp):
CCGAATATACAAATTCAATATAACTTACATGTAA
Found at i:72795472 original size:40 final size:40
Alignment explanation
Indices: 72795413--72795664 Score: 285
Period size: 40 Copynumber: 6.3 Consensus size: 40
72795403 CATTTGAATG
* * *
72795413 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
* *
72795453 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * *
72795493 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
* * *
72795533 TTATCCGGGCTAAGACCCGAAGGCCTTTGTGCGAGTTGGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
72795573 ATATCCGGGCTATGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * ** *
72795613 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
72795653 ATATCC-GGCTAA
1 ATATCCGGGCTAA
72795665 ATTCCGAAGA
Statistics
Matches: 177, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
39 7 0.04
40 166 0.94
41 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:72795550 original size:80 final size:80
Alignment explanation
Indices: 72795417--72795644 Score: 314
Period size: 80 Copynumber: 2.9 Consensus size: 80
72795407 TGAATGATAT
* *
72795417 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
72795482 TGCGAGTTGCTATAC
66 TGCGAGTTGCTATAC
* * *
72795497 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCCTTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
* *
72795562 TGCGAGTTGGTATAT
66 TGCGAGTTGCTATAC
* * * * * * *
72795577 CCGGGCTATGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCATTT
72795641 GTGC
65 GTGC
72795645 TTGTGGTTAT
Statistics
Matches: 130, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
80 128 0.98
81 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:72795627 original size:120 final size:120
Alignment explanation
Indices: 72795413--72795664 Score: 391
Period size: 120 Copynumber: 2.1 Consensus size: 120
72795403 CATTTGAATG
* * * *
72795413 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGAGTATATCCGGGCTAAGACCCGAAGGCA
72795478 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
72795533 TTATCCGGGCTAAGACCCGAAGGCCTTTGTGCGAGTTG-GTATATCCGGGCTATGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGAGTATATCCGGGCTAAGACCCGAAGGC
* *
72795597 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
72795653 ATATCC-GGCTAA
1 ATATCCGGGCTAA
72795665 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 6 0.05
120 112 0.93
121 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGAGTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:72805356 original size:14 final size:14
Alignment explanation
Indices: 72805337--72805380 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
72805327 AGGATTAATA
72805337 TATTATAACATTGT
1 TATTATAACATTGT
72805351 TATTATAACATTGT
1 TATTATAACATTGT
*
72805365 TATTATAGCA-TGT
1 TATTATAACATTGT
72805378 TAT
1 TAT
72805381 GAAACAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
13 6 0.21
14 23 0.79
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (14 bp):
TATTATAACATTGT
Found at i:72809464 original size:85 final size:85
Alignment explanation
Indices: 72809317--72809495 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
72809307 GGCCGGCCAT
72809317 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGCGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGCGCATTAT
72809382 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
72809402 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGCGCATTAT
72809467 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
72809487 GGGCATGGG
1 GAGCATGGG
72809496 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGCGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:72811549 original size:47 final size:47
Alignment explanation
Indices: 72811496--72811841 Score: 482
Period size: 47 Copynumber: 7.3 Consensus size: 47
72811486 TGTACAGGTA
* * *
72811496 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
*
72811543 TATATATGCGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* **
72811592 TGTATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
72811639 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
72811686 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
72811733 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
72811780 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
72811827 TATAAATGTGATAAG
1 TATATATGTGATAAG
72811842 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 233 0.84
48 3 0.01
49 38 0.14
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:72811719 original size:22 final size:22
Alignment explanation
Indices: 72811692--72811813 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
72811682 CATGTGTATG
72811692 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
72811714 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
72811739 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
72811761 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
72811786 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
72811808 TGTGAT
1 TGTGAT
72811814 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:72814594 original size:49 final size:48
Alignment explanation
Indices: 72814516--72814627 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 48
72814506 GATTCTGCAG
* * ** *
72814516 AAAAAGGTGTGTAACTGTACATTGGAAACCATTACTTTC-AAAACGCCAA
1 AAAAAGGAGTGTAATTGTACACCGGAAACCATTACTATCGAAAA-GCC-A
* *
72814565 AAAAAGGAGTGTAATTGTACACCGTAAACCATTACTATCGAAAAGCCG
1 AAAAAGGAGTGTAATTGTACACCGGAAACCATTACTATCGAAAAGCCA
*
72814613 TAAAAGGAGTGTAAT
1 AAAAAGGAGTGTAAT
72814628 CACACCCTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 14 0.26
49 36 0.67
50 4 0.07
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (48 bp):
AAAAAGGAGTGTAATTGTACACCGGAAACCATTACTATCGAAAAGCCA
Found at i:72821567 original size:20 final size:20
Alignment explanation
Indices: 72821544--72821585 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
72821534 TTAATAGTTA
72821544 AATATGAAAGTGCTTAATTG
1 AATATGAAAGTGCTTAATTG
72821564 AATATGAAAGTGCTTAATTG
1 AATATGAAAGTGCTTAATTG
72821584 AA
1 AA
72821586 CTTGTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (20 bp):
AATATGAAAGTGCTTAATTG
Found at i:72822666 original size:43 final size:41
Alignment explanation
Indices: 72822589--72822675 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 41
72822579 TGTCTGGCGT
* **
72822589 CATCGTATTTGATTCATGTAAGACCTTGTCTGGGACAG-TGG
1 CATCGTATGTGATTCATGTAAGACCACGTCTGGGAC-GTTGG
*
72822630 CATCGATATGTGATTACATGTAAGACCACGTTTGGGACGTTGG
1 CATCG-TATGTGATT-CATGTAAGACCACGTCTGGGACGTTGG
72822673 CAT
1 CAT
72822676 TGTACGATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
41 5 0.13
42 9 0.23
43 25 0.64
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (41 bp):
CATCGTATGTGATTCATGTAAGACCACGTCTGGGACGTTGG
Found at i:72846481 original size:29 final size:28
Alignment explanation
Indices: 72846437--72846559 Score: 115
Period size: 28 Copynumber: 4.4 Consensus size: 28
72846427 GAGATTGGCG
* *
72846437 CTAAGTGTGCGGGTTTAAAT-TGTACAGTA
1 CTAAGTGTGCGAGTTTAAATATGT--AGCA
* *
72846466 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATATGTAGCA
* *
72846494 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATATGTAGCA
* * * *
72846522 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATATGTAGCA
*
72846549 CTGAGTGTGCG
1 CTAAGTGTGCG
72846560 GACTTAATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
27 22 0.26
28 43 0.51
29 17 0.20
30 3 0.04
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTAAATATGTAGCA
Found at i:72846547 original size:27 final size:28
Alignment explanation
Indices: 72846465--72846559 Score: 156
Period size: 28 Copynumber: 3.4 Consensus size: 28
72846455 ATTGTACAGT
72846465 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
72846493 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
* *
72846521 ACTAAGTGTGCAAG-TTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTATGTAGC
*
72846548 ACTGAGTGTGCG
1 ACTAAGTGTGCG
72846560 GACTTAATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 22 0.35
28 41 0.65
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTGATTATGTAGC
Found at i:72864017 original size:39 final size:39
Alignment explanation
Indices: 72863963--72864087 Score: 205
Period size: 39 Copynumber: 3.2 Consensus size: 39
72863953 AGTGATGAAG
*
72863963 TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
72864002 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
72864041 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
72864080 TATGTCCG
1 TATATCCG
72864088 AGCTAAAGTC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:72864102 original size:39 final size:39
Alignment explanation
Indices: 72863963--72864126 Score: 199
Period size: 39 Copynumber: 4.2 Consensus size: 39
72863953 AGTGATGAAG
* *
72863963 TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
*
72864002 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
72864041 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * *
72864080 TATGTCC-GAGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGA-CTTAAGGT-CCGCAGGCTACGTGCTGGAAT
72864119 TATA-CCGG
1 TATATCCGG
72864127 GTTTAAATTC
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
38 9 0.08
39 101 0.92
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:72867113 original size:26 final size:27
Alignment explanation
Indices: 72867084--72867137 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
72867074 TCACACAAGT
72867084 TAGTCATTT-ACACACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
72867110 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
72867137 T
1 T
72867138 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:72867168 original size:27 final size:27
Alignment explanation
Indices: 72867138--72867310 Score: 159
Period size: 27 Copynumber: 6.4 Consensus size: 27
72867128 GGGGCAAAAT
* *
72867138 GGTAATTTTACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72867165 GGTAATTCTACCTTAC-AGAGGAATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * * *
72867192 GGTCATTCTATCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
72867219 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
72867246 AATAATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72867273 GGTAATTCTACCTTACAGGGGGATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
72867300 GGTAATTCTAC
1 GGTAATTCTAC
72867311 AACTTATCCA
Statistics
Matches: 121, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 117 0.97
28 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72867254 original size:54 final size:54
Alignment explanation
Indices: 72867138--72867310 Score: 193
Period size: 54 Copynumber: 3.2 Consensus size: 54
72867128 GGGGCAAAAT
* * * *
72867138 GGTAATTTTACCCCACAAGGGTATTTCGGTAATTCTACCTTACAGAGGAATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
* * * * ** * *
72867192 GGTCATTCTATCTTATAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
** * * *
72867246 AATAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCTTACAGGGGGATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
72867300 GGTAATTCTAC
1 GGTAATTCTAC
72867311 AACTTATCCA
Statistics
Matches: 93, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
Found at i:72867281 original size:81 final size:81
Alignment explanation
Indices: 72867140--72867310 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
72867130 GGCAAAATGG
* ** * * * * *
72867140 TAATTTTACCCCACAAGGGTATTTCGGTAATTCTACCTTACAGAGGAATTTTGGTCATTCTATCT
1 TAATTCTACCCCACAAGGGTATTTCAATAATTCTACCCTACAGAGGAATCTCGGTAATTCTACCT
* *
72867205 TATAAGGGTATTTCAA
66 TACAAGGGGATTTCAA
* * * *
72867221 TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCT
1 TAATTCTACCCCACAAGGGTATTTCAATAATTCTACCCTACAGAGGAATCTCGGTAATTCTACCT
* **
72867286 TACAGGGGGATTTCGG
66 TACAAGGGGATTTCAA
72867302 TAATTCTAC
1 TAATTCTAC
72867311 AACTTATCCA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCCACAAGGGTATTTCAATAATTCTACCCTACAGAGGAATCTCGGTAATTCTACCT
TACAAGGGGATTTCAA
Found at i:72873474 original size:26 final size:27
Alignment explanation
Indices: 72873445--72873498 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
72873435 TCACACAAGT
*
72873445 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
72873471 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
72873498 T
1 T
72873499 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:72873529 original size:27 final size:27
Alignment explanation
Indices: 72873499--72873696 Score: 218
Period size: 27 Copynumber: 7.4 Consensus size: 27
72873489 GGGGCAAAAT
* * * *
72873499 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72873526 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72873553 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72873580 GATAATTCTATCCAACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72873607 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * *
72873634 AATAATTTTATCTTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72873660 GGTAATTCTACCTTACAGCGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72873687 GATAATTCTA
1 GGTAATTCTA
72873697 TAACTTATCC
Statistics
Matches: 141, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 21 0.15
27 120 0.85
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:72873601 original size:54 final size:54
Alignment explanation
Indices: 72873499--72873697 Score: 249
Period size: 54 Copynumber: 3.7 Consensus size: 54
72873489 GGGGCAAAAT
* * * * * *
72873499 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
* *
72873553 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTATCCAACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
* ** * *
72873607 GGTAATTCTACCCTACAGGGGTATTTTAATAATTTTATCTTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
*
72873660 GGTAATTCTACCTTAC-AGCGGTATTTCGATAATTCTAT
1 GGTAATTCTACCCTACAAG-GGTATTTCGATAATTCTAT
72873698 AACTTATCCA
Statistics
Matches: 124, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
52 1 0.01
53 41 0.33
54 82 0.66
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
Found at i:72880105 original size:42 final size:42
Alignment explanation
Indices: 72880046--72880129 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
72880036 ATTTTAATAC
72880046 TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
1 TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
*
72880088 TATTTGGTCCTTACATATTCACCTATCATATTTTCTTAAGTT
1 TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
72880130 CTCAACTAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.24, C:0.19, G:0.08, T:0.49
Consensus pattern (42 bp):
TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
Found at i:72886447 original size:42 final size:42
Alignment explanation
Indices: 72886388--72886469 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
72886378 CAGAGATTCA
72886388 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACTCG
1 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACTCG
72886430 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACT
1 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACT
72886470 TAATGCATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (42 bp):
GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACTCG
Found at i:72886488 original size:42 final size:41
Alignment explanation
Indices: 72886395--72886488 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 41
72886385 TCAGTATTTG
* * * *
72886395 CCCATACATAATTTAAAATTTAACTTTTAAACTCGGTATTT
1 CCCAAACATAATTTAAAATTTAACTTTTAAACTAGGCATAT
* *
72886436 GCCCATACATAATTTAAAATTTAACTTTTAAACTTAATGCATAT
1 -CCCAAACATAATTTAAAATTTAACTTTTAAAC-T-AGGCATAT
72886480 -CCAAACATA
1 CCCAAACATA
72886489 CTTTTCATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 40 0.89
43 1 0.02
44 4 0.09
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.37
Consensus pattern (41 bp):
CCCAAACATAATTTAAAATTTAACTTTTAAACTAGGCATAT
Found at i:72891193 original size:39 final size:39
Alignment explanation
Indices: 72891139--72891254 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
72891129 AGTGATGAAG
72891139 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
72891178 TATATCTGGACTTAAGGTCTGCAAGCTATGTGCTGGAAT
1 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
72891217 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
72891255 ATATGTCCGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:72891291 original size:78 final size:78
Alignment explanation
Indices: 72891139--72891298 Score: 189
Period size: 78 Copynumber: 2.1 Consensus size: 78
72891129 AGTGATGAAG
* * * * * *
72891139 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCTGGACTTAAGGTCTGCAAGC
1 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
*
72891204 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
72891217 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCATG
1 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAAG
*
72891281 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
72891295 TATA
1 TATA
72891299 CCGGGTTTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 6 0.09
78 63 0.91
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (78 bp):
TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
TATGAGCTGGAAT
Found at i:72896016 original size:40 final size:40
Alignment explanation
Indices: 72895932--72896156 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
72895922 TTGAATGATG
* * * *
72895932 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
72895972 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72896011 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72896051 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72896091 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72896132 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72896157 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 33 0.20
40 123 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72896174 original size:80 final size:80
Alignment explanation
Indices: 72895932--72896189 Score: 235
Period size: 80 Copynumber: 3.2 Consensus size: 80
72895922 TTGAATGATG
* * * * * * *
72895932 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
**
72895995 TTGTGCGAGAT-AC-AAA
64 TTGAACGAG-TGACTAAA
* *
72896011 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATT
** *
72896075 TGTGCGAGTTACTAAA
65 TGAACGAGTGACTAAA
* *
72896091 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
72896155 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
72896171 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72896190 TACGTGATTT
Statistics
Matches: 154, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.01
79 71 0.46
80 79 0.51
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:72896178 original size:119 final size:118
Alignment explanation
Indices: 72895932--72896189 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 118
72895922 TTGAATGATG
* *
72895932 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** *
72895997 GTGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACAAA-TCCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
72896051 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
72896114 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATAC-A-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
72896171 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72896190 TACGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
118 1 0.01
119 82 0.70
120 32 0.27
121 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:72904031 original size:40 final size:40
Alignment explanation
Indices: 72903947--72904171 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
72903937 TTGAATGATG
* * * *
72903947 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
72903987 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72904026 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72904066 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72904106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72904147 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72904172 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 33 0.20
40 123 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72904189 original size:80 final size:80
Alignment explanation
Indices: 72903947--72904204 Score: 235
Period size: 80 Copynumber: 3.2 Consensus size: 80
72903937 TTGAATGATG
* * * * * * *
72903947 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
**
72904010 TTGTGCGAGAT-AC-AAA
64 TTGAACGAG-TGACTAAA
* *
72904026 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATT
** *
72904090 TGTGCGAGTTACTAAA
65 TGAACGAGTGACTAAA
* *
72904106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
72904170 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
72904186 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72904205 TACGTGATTT
Statistics
Matches: 154, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.01
79 71 0.46
80 79 0.51
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:72904193 original size:119 final size:118
Alignment explanation
Indices: 72903947--72904204 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 118
72903937 TTGAATGATG
* *
72903947 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** *
72904012 GTGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACAAA-TCCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
72904066 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
72904129 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATAC-A-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
72904186 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72904205 TACGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
118 1 0.01
119 82 0.70
120 32 0.27
121 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:72910959 original size:38 final size:38
Alignment explanation
Indices: 72910788--72910947 Score: 232
Period size: 38 Copynumber: 4.2 Consensus size: 38
72910778 GAATCCAGTC
* * * *
72910788 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATAT-AT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
72910827 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
*
72910865 ACCAGCACTAAGCCTGCAGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* *
72910903 ACCAGCACGAAGCCTGCGGGATTTAACCCGCATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
72910941 ACCAGCA
1 ACCAGCA
72910948 TGAAGCTTGC
Statistics
Matches: 112, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
37 7 0.06
38 86 0.77
39 19 0.17
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:72918923 original size:38 final size:38
Alignment explanation
Indices: 72918838--72918956 Score: 141
Period size: 38 Copynumber: 3.1 Consensus size: 38
72918828 GAATCCAGTC
* * *
72918838 ACCAGCACAAAACCTGCGGGACTTCAAGCTCG-ATTATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGCA-TATAAT
** * *
72918878 AGTAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
72918916 ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
72918954 ACC
1 ACC
72918957 GGCATGAAGC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 46 0.68
39 5 0.07
40 17 0.25
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
Found at i:72920821 original size:40 final size:40
Alignment explanation
Indices: 72920773--72921039 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
72920763 GCAAACACAT
* *
72920773 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72920813 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72920853 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72920893 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72920933 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72920973 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72921013 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
72921040 ATCCAATGCT
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72929512 original size:40 final size:40
Alignment explanation
Indices: 72929424--72929650 Score: 404
Period size: 40 Copynumber: 5.7 Consensus size: 40
72929414 GCAAACACAT
* *
72929424 TTGCCTTCGGGTCTTAACCCGGACATATCAACT-GCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72929463 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72929503 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72929543 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72929583 TTGCCTTCGGGTCTTAGCCCGGATATAT-AACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72929622 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGATATATC
72929651 CAATGCTCAT
Statistics
Matches: 180, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 69 0.38
40 111 0.62
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72933824 original size:27 final size:27
Alignment explanation
Indices: 72933794--72934203 Score: 462
Period size: 27 Copynumber: 15.2 Consensus size: 27
72933784 ATTACCAAAG
72933794 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * **
72933821 TACCCTCAGTTTACAAAATTACTATTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72933848 TACCCTCAA-TTATAGAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* ** * *
72933874 TACCCTTAATTTTTAAAACTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
**
72933901 TACCCTCAATTTACAGAATTATTGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72933928 TACCCTCAGTTTACAAAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72933955 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCAATTTACAGAATTACCGTTT
*
72933982 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * *
72934009 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* **
72934036 TACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72934063 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* ** *
72934090 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
** * *
72934117 TACCCTTGATTTACAGAATTACTGGTT
1 TACCCTCAATTTACAGAATTACCGTTT
* * *
72934144 TACCCTCAGTTTACAAAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
* *
72934171 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
72934198 TACCCT
1 TACCCT
72934204 TGATTGTGAA
Statistics
Matches: 314, Mismatches: 68, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
26 20 0.06
27 294 0.94
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCGTTT
Found at i:72933839 original size:54 final size:54
Alignment explanation
Indices: 72933794--72934203 Score: 518
Period size: 54 Copynumber: 7.6 Consensus size: 54
72933784 ATTACCAAAG
* **
72933794 TACCCTCAATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
* * * * * ** *
72933848 TACCCTC-AATTATAGAATTATCGTTTTACCCTTAATTTTTAAAACTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
* **
72933901 TACCCTCAATTTACAGAATTATTGTTTTACCCTCAGTTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
* * * *
72933955 TACCCTCGATTTACAGAATTACCGTTCTACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
* * * **
72934009 TACCCTCGATTTATAAAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
* **
72934063 TACCCTCGATTTACAGAATTATCGTTTTACCCTC-GATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACCGTTT
* * * *
72934117 TACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
*
72934171 TACCCTCGATTTACAGAATTATCGTTTTACCCT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCT
72934204 TGATTGTGAA
Statistics
Matches: 304, Mismatches: 49, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
53 44 0.14
54 259 0.85
55 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCGTTT
Found at i:72934281 original size:54 final size:54
Alignment explanation
Indices: 72934213--72934408 Score: 268
Period size: 54 Copynumber: 3.6 Consensus size: 54
72934203 TTGATTGTGA
* **
72934213 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * *
72934267 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* *
72934321 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
72934375 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
72934409 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:72934408 original size:27 final size:27
Alignment explanation
Indices: 72934213--72934408 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
72934203 TTGATTGTGA
* *
72934213 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
72934240 AATTTTCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
72934267 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
72934294 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
72934321 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
72934348 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
72934375 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
72934402 AATTACC
1 AATTACC
72934409 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:72934645 original size:27 final size:26
Alignment explanation
Indices: 72934607--72934689 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
72934597 CGAAGGAAGC
* *
72934607 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
72934634 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
72934660 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
72934687 GTT
1 GTT
72934690 GACTGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:72934809 original size:22 final size:22
Alignment explanation
Indices: 72934777--72934835 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
72934767 CCCGTTATTA
*
72934777 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
72934799 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
72934821 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
72934836 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:72935022 original size:27 final size:27
Alignment explanation
Indices: 72935000--72935073 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
72934990 TAGGTGGGTT
*
72935000 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
72935027 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
*
72935054 TGTCACAATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
72935074 CAGCCATGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.12
27 37 0.86
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:72935200 original size:6 final size:6
Alignment explanation
Indices: 72935191--72935334 Score: 127
Period size: 6 Copynumber: 23.8 Consensus size: 6
72935181 TTGCATTCAC
* * *
72935191 ATTCTG ATTCTG ATTCTG -TCACGTA ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
72935240 ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTA ATTCTG -TTACTA
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
72935288 ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG GTTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
72935335 CATTTTGGTT
Statistics
Matches: 112, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
5 8 0.07
6 97 0.87
7 5 0.04
8 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72935267 original size:30 final size:30
Alignment explanation
Indices: 72935231--72935334 Score: 163
Period size: 30 Copynumber: 3.5 Consensus size: 30
72935221 GATTCTGATT
72935231 CTGATTCTGATTCTGATTCTGTTACTAATA
1 CTGATTCTGATTCTGATTCTGTTACTAATA
*
72935261 CTGATTCTGATTCTAATTCTGTTACTAATA
1 CTGATTCTGATTCTGATTCTGTTACTAATA
* * *
72935291 TTGATTCTGATTCTGATTCTGTTACTGATT
1 CTGATTCTGATTCTGATTCTGTTACTAATA
*
72935321 CTGATTCTGGTTCT
1 CTGATTCTGATTCT
72935335 CATTTTGGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (30 bp):
CTGATTCTGATTCTGATTCTGTTACTAATA
Found at i:72939100 original size:43 final size:42
Alignment explanation
Indices: 72939045--72939215 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 42
72939035 ATATCGTACA
72939045 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AATCACATATCG
*
72939088 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCTA-ATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAATC-ACATATCG
* * * *
72939129 ATGCAAATGTCCCAAACTTGGTCTTACACCT-AATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACA--TGAATCACATATCG
* *
72939172 ATGCCAACGTCCCAGACGTGGTCCTACATGAGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGA-ATCACATATCG
72939215 A
1 A
72939216 AAATCCTATG
Statistics
Matches: 105, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
41 25 0.24
42 18 0.17
43 61 0.58
44 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAATCACATATCG
Found at i:72944559 original size:46 final size:46
Alignment explanation
Indices: 72944416--72944559 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
72944406 CCCGCCCATA
* * *
72944416 AGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
72944465 --CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
72944509 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
72944555 AGTGA
1 AGTGA
72944560 CATGTCACTT
Statistics
Matches: 73, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.44
47 29 0.40
49 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:72946193 original size:39 final size:39
Alignment explanation
Indices: 72946147--72946604 Score: 727
Period size: 39 Copynumber: 11.7 Consensus size: 39
72946137 TGTGTGAGAT
*
72946147 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
72946186 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGAG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
72946225 TTATCTCCGGGATAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
72946264 TTATGTCCGGGCTAAGTCCCAAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
72946303 TTATGTCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
72946342 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTTCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
72946381 TTATGTCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
72946420 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
72946459 TTATATCTGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
72946498 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
72946537 TTATATCCGGGCTAAGTCTCAAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
72946576 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
72946605 TGTGTTGGAA
Statistics
Matches: 385, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 385 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:72951855 original size:35 final size:35
Alignment explanation
Indices: 72951815--72951889 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
72951805 ATAAATAATT
*
72951815 TCTTCCTTAACGGTATCATTACATATTAAGAATAA
1 TCTTCCTTAACGGTAACATTACATATTAAGAATAA
*
72951850 TCTTCCTTAATGGTAACATTACATATTAAGAATAA
1 TCTTCCTTAACGGTAACATTACATATTAAGAATAA
72951885 TCTTC
1 TCTTC
72951890 AGAAAAATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (35 bp):
TCTTCCTTAACGGTAACATTACATATTAAGAATAA
Found at i:72957573 original size:10 final size:10
Alignment explanation
Indices: 72957558--72957596 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
72957548 TGCTTTTCTA
72957558 CATGATATGC
1 CATGATATGC
72957568 CATGATATGC
1 CATGATATGC
72957578 ACATGATATGC
1 -CATGATATGC
72957589 CATGATAT
1 CATGATAT
72957597 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:72957582 original size:21 final size:21
Alignment explanation
Indices: 72957557--72957596 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
72957547 CTGCTTTTCT
72957557 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
72957578 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
72957597 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:72957714 original size:24 final size:25
Alignment explanation
Indices: 72957643--72957737 Score: 122
Period size: 25 Copynumber: 3.8 Consensus size: 25
72957633 AGGAAGTGCT
* *
72957643 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
72957668 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
72957693 AAAAGGGCTTTGCCCCAG-TTATTA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
72957717 AAATA-GGCTATGCCTCCAGTT
1 AAA-AGGGCTTTGCC-CCAGTT
72957738 ATATGATAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
24 16 0.25
25 46 0.73
26 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:72960031 original size:27 final size:27
Alignment explanation
Indices: 72959993--72960413 Score: 345
Period size: 27 Copynumber: 15.6 Consensus size: 27
72959983 TTAGTTTACC
* * *
72959993 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
72960020 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
72960047 AATTTACCAAAATACTCCTAG-TTTGTG
1 AAATTACCAAAATAC-CCTCGATTTGTA
* *
72960074 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
72960101 AAATTACTAAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
72960128 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** *
72960155 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
72960182 AAATTACCAAAATACCCTTGGTTTCCA
1 AAATTACCAAAATACCCTCGATTTGTA
*
72960209 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
72960236 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
*** **
72960263 AAATTATTTAAATACCCTC-AGTTTCCA
1 AAATTACCAAAATACCCTCGA-TTTGTA
** *
72960290 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
72960317 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
72960344 AAATTACCAAAGTACCC-CGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*** **
72960370 AAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
**
72960397 AAATTATTAAAATACCC
1 AAATTACCAAAATACCC
72960414 CTGTAGGGTA
Statistics
Matches: 316, Mismatches: 64, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
26 26 0.08
27 283 0.90
28 7 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:72960072 original size:54 final size:53
Alignment explanation
Indices: 72959993--72960376 Score: 391
Period size: 54 Copynumber: 7.1 Consensus size: 53
72959983 TTAGTTTACC
* * *
72959993 AAATTACTAAAATGCCCTCA-ATTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAATTACTAAAATACCCT-AGATTTGTAAAATTACCAAAATACCCCTGATTTGT
* * *
72960046 AAATTTACCAAAATACTCCTAG-TTTGTGAAATTACCGAAATACCCCTGATTTGT
1 AAA-TTACTAAAATAC-CCTAGATTTGTAAAATTACCAAAATACCCCTGATTTGT
* *
72960100 GAAATTACTAAAATACCCTTGACTTGTAAAATTACCAAAATACCCCTGATTTGT
1 -AAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGATTTGT
* * * * * **
72960154 GAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTCCA
1 -AAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGATTT-GT
*
72960209 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTTGT
1 AAATTACTAAAATA-CCCTAGATTTGTAAAATTACCAAAATACCCCTGATTTGT
* * ** ** *
72960262 GAAATTATTTAAATACCCTCAG-TTTCCAAAATTACTGAAATACCCTTGATTTGT
1 -AAATTACTAAAATACCCT-AGATTTGTAAAATTACCAAAATACCCCTGATTTGT
* * * *
72960316 AAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCC-GATTTAT
1 -AAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGATTTGT
72960369 AAAATTAC
1 -AAATTAC
72960377 CATTTTACCC
Statistics
Matches: 276, Mismatches: 45, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
53 26 0.09
54 239 0.87
55 11 0.04
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (53 bp):
AAATTACTAAAATACCCTAGATTTGTAAAATTACCAAAATACCCCTGATTTGT
Found at i:72960428 original size:27 final size:27
Alignment explanation
Indices: 72960406--72960490 Score: 152
Period size: 27 Copynumber: 3.1 Consensus size: 27
72960396 AAAATTATTA
*
72960406 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
72960433 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
72960460 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
72960487 AAAT
1 AAAT
72960491 TTTCTTTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:72960674 original size:27 final size:27
Alignment explanation
Indices: 72960639--72960709 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
72960629 TTCAAATCCT
* *
72960639 TGTAAGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
72960666 TGTAGGGTAGAATTACCGAGATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCC
* *
72960693 TGTGGGGTAAAATTACC
1 TGTAGGGTAGAATTACC
72960710 ATTTTGCCCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCC
Found at i:72961021 original size:24 final size:25
Alignment explanation
Indices: 72960914--72961008 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
72960904 AGGAAGTGCT
* *
72960914 AAAAAGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
72960939 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
72960964 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
72960989 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
72961009 ACTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:72961032 original size:50 final size:50
Alignment explanation
Indices: 72960925--72961033 Score: 132
Period size: 50 Copynumber: 2.2 Consensus size: 50
72960915 AAAAGGCTTT
* * **
72960925 GCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTT
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAG
* *
72960975 GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-CTAAAAGAGGCTAG
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAG
72961024 GCCTCCAGTT
1 GCC-CCAGTT
72961034 ATATGATAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
48 6 0.12
49 10 0.20
50 35 0.69
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (50 bp):
GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAG
Found at i:72963683 original size:42 final size:42
Alignment explanation
Indices: 72963576--72963740 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 42
72963566 ATATGTGTTA
* **
72963576 TCGTGTAAGACCACGTCTGGGAATTTGGCATCG-ACTTATGATGT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGTA-TT-TGAT-T
* * * *
72963620 ACGTGTAAGATCACGTTTGGGACGTTGGCATCGTATTTGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATT
72963662 TCGTGTAAGAACC-TGTCTGGGACAG-TGGCATCGATATTTG-TT
1 TCGTGTAAG-ACCATGTCTGGGAC-GTTGGCATCG-TATTTGATT
* * * *
72963704 TACATGTAAGACCATGTCTGGAACATTGGCATTGTAT
1 T-CGTGTAAGACCATGTCTGGGACGTTGGCATCGTAT
72963741 GAGCTTTCCG
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 34 0.34
43 36 0.36
44 30 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATT
Found at i:72969415 original size:20 final size:20
Alignment explanation
Indices: 72969390--72969449 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
72969380 GATTCGAGAT
* * *
72969390 AGTCTGACAGCAGCTTTCGA
1 AGTCTGAAAGCAGCTTCCAA
72969410 AGTCTGAAAGCAGCTTCCAA
1 AGTCTGAAAGCAGCTTCCAA
**
72969430 AGTCTGAAAATAGCTTCCAA
1 AGTCTGAAAGCAGCTTCCAA
72969450 TCGTTAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (20 bp):
AGTCTGAAAGCAGCTTCCAA
Found at i:72975039 original size:10 final size:10
Alignment explanation
Indices: 72975024--72975062 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
72975014 GGGTCATCAG
72975024 GGATCGTCAA
1 GGATCGTCAA
72975034 GGATCGTC-A
1 GGATCGTCAA
72975043 GAGATCGTCAA
1 G-GATCGTCAA
72975054 GGATCGTCA
1 GGATCGTCA
72975063 CCACACTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.21
Consensus pattern (10 bp):
GGATCGTCAA
Found at i:72975048 original size:20 final size:20
Alignment explanation
Indices: 72975020--72975062 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
72975010 TCTGGGGTCA
*
72975020 TCAGGGATCGTCAAGGATCG
1 TCAGAGATCGTCAAGGATCG
72975040 TCAGAGATCGTCAAGGATCG
1 TCAGAGATCGTCAAGGATCG
72975060 TCA
1 TCA
72975063 CCACACTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (20 bp):
TCAGAGATCGTCAAGGATCG
Found at i:72977383 original size:22 final size:22
Alignment explanation
Indices: 72977358--72977401 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
72977348 ATGATCTTGG
* *
72977358 ATATTTGTAATGTCTTGTAAAT
1 ATATATGTAATGGCTTGTAAAT
**
72977380 ATATATGTTTTGGCTTGTAAAT
1 ATATATGTAATGGCTTGTAAAT
72977402 CTAGCCATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.50
Consensus pattern (22 bp):
ATATATGTAATGGCTTGTAAAT
Found at i:72986303 original size:45 final size:45
Alignment explanation
Indices: 72986247--72986337 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
72986237 GAATTATGTG
* * *
72986247 ATCTGAACTCATTGAGTTGTGGTCTGAGTTTATGATATATGTGAC
1 ATCTGAACTCATTCAGTTGTGGTCTAAGTTCATGATATATGTGAC
* *
72986292 ATCTGAGCTCATTCAGTTGTGGTCTAAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTCAGTTGTGGTCTAAGTTCATGATATATGTGAC
72986337 A
1 A
72986338 CATGTTCAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTCAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:72990347 original size:32 final size:32
Alignment explanation
Indices: 72990311--72990376 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
72990301 AATTAAAAGA
72990311 ATTAAAAAGGGAAATAAGCCAAATTAGATATC
1 ATTAAAAAGGGAAATAAGCCAAATTAGATATC
* *
72990343 ATTAAAAAGGTAAATAAGCCAAATTAGCTATC
1 ATTAAAAAGGGAAATAAGCCAAATTAGATATC
72990375 AT
1 AT
72990377 CTTCTTCATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.24
Consensus pattern (32 bp):
ATTAAAAAGGGAAATAAGCCAAATTAGATATC
Found at i:72993371 original size:47 final size:47
Alignment explanation
Indices: 72993300--72994780 Score: 2550
Period size: 47 Copynumber: 31.3 Consensus size: 47
72993290 CCCTTCGGGA
* * * * * *
72993300 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
72993347 CCTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72993394 CTTATCACATATATACACTTTCACATTCACCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72993441 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72993490 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993537 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993586 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72993633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993680 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993727 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993776 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72993823 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72993870 CTTATCACATATATACACTTTCACATTCACCACATTGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993917 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72993966 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994013 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994107 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994156 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994203 CTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994249 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994296 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994343 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994390 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72994437 CTTATCACATATATACACTTTCACATTCACCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994484 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994533 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994580 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994627 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994674 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994721 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994768 CTTATCACATATA
1 CTTATCACATATA
72994781 CTATCATGTA
Statistics
Matches: 1379, Mismatches: 42, Indels: 26
0.95 0.03 0.02
Matches are distributed among these distances:
46 46 0.03
47 1058 0.77
49 275 0.20
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72993656 original size:190 final size:190
Alignment explanation
Indices: 72993300--72994780 Score: 2634
Period size: 190 Copynumber: 7.8 Consensus size: 190
72993290 CCCTTCGGGA
* * * * * * * *
72993300 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * * *
72993363 ACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACACTTTCACATTCACCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
72993428 TTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72993490 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
*
72993555 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCACCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
72993620 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72993680 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
72993745 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
72993810 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72993870 CTTATCACATATATACACTTTCACATTCACCACATTGGTCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
72993935 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
72994000 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
72994125 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
72994190 TCGGCCATTAGGCCTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994249 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
72994312 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
72994377 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72994437 CTTATCACATATATACACTTTCACATTCACCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
72994502 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
72994567 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72994627 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
72994690 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
72994755 TCGGCCATTAGGCCTTATCACATATA
131 TCGGCCATTAGGCCTTATCACATATA
72994781 CTATCATGTA
Statistics
Matches: 1250, Mismatches: 36, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
187 100 0.08
188 182 0.15
189 84 0.07
190 795 0.64
192 89 0.07
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72997407 original size:8 final size:8
Alignment explanation
Indices: 72997394--72997427 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
72997384 GTTTTACCTT
72997394 AAAAATAA
1 AAAAATAA
72997402 AAAAATAA
1 AAAAATAA
72997410 AAAAATAA
1 AAAAATAA
72997418 AAAAATAA
1 AAAAATAA
72997426 AA
1 AA
72997428 CATGTTGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:73000303 original size:19 final size:19
Alignment explanation
Indices: 73000279--73000316 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
73000269 TGGGCCACGT
73000279 TGGGCCGAAATGGG-TCGTG
1 TGGGCC-AAATGGGCTCGTG
*
73000298 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
73000317 GGTCCCACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.13, C:0.21, G:0.45, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:73000585 original size:27 final size:27
Alignment explanation
Indices: 73000551--73000750 Score: 219
Period size: 27 Copynumber: 7.4 Consensus size: 27
73000541 CCTCAAAATA
* * *
73000551 GGTAAAATGACTATAATACCCCTATAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
* *
73000578 GGTAAAATGA-TCGTAATGTCCCTATAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
* *
73000605 GGTAAAATAACTATAATGCCCCTGTAG
1 GGTAAAATGACTGTAATGCCCCTGTAG
73000632 GGTAAAATGA-TCGTAATGCCCCTGTAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
*
73000659 GGTAAAATGACCGTAATAG-CCCTGTAG
1 GGTAAAATGACTGTAAT-GCCCCTGTAG
* *
73000686 GATAAAATG-GTCGTAATGCCCCTGTAG
1 GGTAAAATGACT-GTAATGCCCCTGTAG
* * *
73000713 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACTGTAATGCCCCTGTAG
73000740 GGTAAAATGAC
1 GGTAAAATGAC
73000751 GATTATGCCC
Statistics
Matches: 147, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.02
27 142 0.97
28 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATGCCCCTGTAG
Found at i:73000692 original size:81 final size:80
Alignment explanation
Indices: 73000551--73000750 Score: 251
Period size: 81 Copynumber: 2.5 Consensus size: 80
73000541 CCTCAAAATA
* * * *
73000551 GGTAAAATGACTATAATACCCCTATAGGGTAAAATGATCGTAATGTCCCTATAGGGTAAAATAAC
1 GGTAAAATGAC-GTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCCTATAGGATAAAAT-AC
73000616 T-ATAATGCCCCTGTAG
64 TCATAATGCCCCTGTAG
* * **
73000632 GGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGACCGTAATAG-CCCTGTAGGATAAAATGG
1 GGTAAAATGA-CGTAATACCCCTGTAGGGTAAAATGACCGTAAT-GTCCCTATAGGATAAAATAC
*
73000696 TCGTAATGCCCCTGTAG
64 TCATAATGCCCCTGTAG
*
73000713 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGAC
1 GGTAAAATGA-CGTAATACCCCTGTAGGGTAAAATGAC
73000751 GATTATGCCC
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 101 0.97
82 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (80 bp):
GGTAAAATGACGTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCCTATAGGATAAAATACTC
ATAATGCCCCTGTAG
Found at i:73000760 original size:54 final size:54
Alignment explanation
Indices: 73000551--73000749 Score: 281
Period size: 54 Copynumber: 3.7 Consensus size: 54
73000541 CCTCAAAATA
* * * *
73000551 GGTAAAATGACTATAATACCCCTATAGGGTAAAATGATCGTAATGTCCCTATAG
1 GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAG
* * *
73000605 GGTAAAATAACTATAATGCCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAG
* * * *
73000659 GGTAAAATGACCGTAATAGCCCTGTAGGATAAAATGGTCGTAATGCCCCTGTAG
1 GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAG
* *
73000713 GGTAAAATGACCGTAATACCCCTGTATGGTAAAATGA
1 GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGA
73000750 CGATTATGCC
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 129 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAG
Found at i:73000920 original size:27 final size:27
Alignment explanation
Indices: 73000890--73000951 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
73000880 AGGAAGTACT
* *
73000890 TTACTGGTGACTATGTCACATTCACTG
1 TTACTGGCGACTATGCCACATTCACTG
* * *
73000917 TTACTGCCGACTTTGCCACATTTACTG
1 TTACTGGCGACTATGCCACATTCACTG
*
73000944 TTTCTGGC
1 TTACTGGC
73000952 AGCTTTGCTA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.39
Consensus pattern (27 bp):
TTACTGGCGACTATGCCACATTCACTG
Found at i:73001134 original size:28 final size:27
Alignment explanation
Indices: 73001083--73001139 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
73001073 GTACTAAGAT
* *
73001083 TGCATTGGGCTTAGGCCCACACTGCTAC
1 TGCATAGGGCTAAGGCCCACACTG-TAC
* *
73001111 TGCATAGGGCTAAGGCCGAGACTGTAC
1 TGCATAGGGCTAAGGCCCACACTGTAC
73001138 TG
1 TG
73001140 ATACTAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (27 bp):
TGCATAGGGCTAAGGCCCACACTGTAC
Found at i:73003909 original size:31 final size:31
Alignment explanation
Indices: 73003866--73003949 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
73003856 TTAGTCTTGA
73003866 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
73003896 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
73003927 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
73003950 ACTATAAACT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:73004032 original size:42 final size:42
Alignment explanation
Indices: 73003973--73004106 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
73003963 TGGCCCTTAG
* *
73003973 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
73004015 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
73004057 GCCCATTTCAATATCATATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
73004099 GCCCATTT
1 GCCCATTT
73004107 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:73004282 original size:25 final size:25
Alignment explanation
Indices: 73004254--73004347 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
73004244 CTCTTTTAAT
*
73004254 AACTGGGGTAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTCTGATA
*
73004279 AACTGGGGGAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTCTGATA
* *
73004304 AACTAGGGCAAAGCCCTTT-TCGGTA
1 AACTGGGGCAAAGCCCTTTCT-GATA
* *
73004329 AACTGGGACAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
73004348 TAGCACTTCC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 1 0.02
25 60 0.98
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTCTGATA
Done.