Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 230 of 318
Found at i:73010693 original size:31 final size:31
Alignment explanation
Indices: 73010624--73010706 Score: 111
Period size: 31 Copynumber: 2.7 Consensus size: 31
73010614 TCAACCTCAA
*
73010624 CATAT-ACTGGGCTGAAGCC-TTTCATAATT
1 CATATCACTGGGCCGAAGCCTTTTCATAATT
73010653 CAT-TACACTGGGCCGAAGCCTTTTCCA-AATT
1 CATAT-CACTGGGCCGAAGCCTTTT-CATAATT
73010684 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
73010707 ACTGTAAGTG
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
28 1 0.02
29 3 0.06
30 13 0.27
31 28 0.58
32 3 0.06
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAATT
Found at i:73011017 original size:21 final size:21
Alignment explanation
Indices: 73010992--73011042 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
73010982 TATAATGAGT
*
73010992 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
73011013 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
73011034 ATATCATGT
1 ATATCATGT
73011043 ATATCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:73012747 original size:18 final size:18
Alignment explanation
Indices: 73012716--73012759 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
73012706 CAAACTTTAC
*
73012716 AAAATTTACCAAAATCTCG
1 AAAA-TTACCAAAATCCCG
* *
73012735 AGAATTACGAAAATCCCG
1 AAAATTACCAAAATCCCG
73012753 AAAATTA
1 AAAATTA
73012760 GGTTGTTACA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.23
Consensus pattern (18 bp):
AAAATTACCAAAATCCCG
Found at i:73014370 original size:17 final size:18
Alignment explanation
Indices: 73014343--73014378 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
73014333 AAGCAAATAT
73014343 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
73014361 ATGC-TATTAATTTATTA
1 ATGCATATTAAATTATTA
73014378 A
1 A
73014379 AACGAGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:73016770 original size:59 final size:59
Alignment explanation
Indices: 73016678--73016799 Score: 235
Period size: 59 Copynumber: 2.1 Consensus size: 59
73016668 TTTGAAAGCC
73016678 TTTAAGCATTCCTCATCAAACTTGAAGGTCGTGTCCTTCTCTAATAATTTGCACAAAGG
1 TTTAAGCATTCCTCATCAAACTTGAAGGTCGTGTCCTTCTCTAATAATTTGCACAAAGG
*
73016737 TTTAAGCATTCCTCATCAAACTTGAAGGTCGTGTCCTTCTCTAATAATTTGCACAAGGG
1 TTTAAGCATTCCTCATCAAACTTGAAGGTCGTGTCCTTCTCTAATAATTTGCACAAAGG
73016796 TTTA
1 TTTA
73016800 GCAATTTTGG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (59 bp):
TTTAAGCATTCCTCATCAAACTTGAAGGTCGTGTCCTTCTCTAATAATTTGCACAAAGG
Found at i:73018708 original size:63 final size:63
Alignment explanation
Indices: 73018609--73018735 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
73018599 GTGCTTTAAC
73018609 CAGCGGGATGTTGATATGGAGTTGCTTGAGTACGTTTAGGAACTTCTTGAATTGAATCTCTTA
1 CAGCGGGATGTTGATATGGAGTTGCTTGAGTACGTTTAGGAACTTCTTGAATTGAATCTCTTA
73018672 CAGCGGGATGTTGATATGGAGTTGCTTGAGTACGTTTAGGAACTTCTTGAATTGAATCTCTTA
1 CAGCGGGATGTTGATATGGAGTTGCTTGAGTACGTTTAGGAACTTCTTGAATTGAATCTCTTA
73018735 C
1 C
73018736 TTCTTCTTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (63 bp):
CAGCGGGATGTTGATATGGAGTTGCTTGAGTACGTTTAGGAACTTCTTGAATTGAATCTCTTA
Found at i:73022215 original size:12 final size:11
Alignment explanation
Indices: 73022188--73022223 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
73022178 GAAAGCAACC
73022188 AAAATTAA-TA
1 AAAATTAATTA
73022198 AAAATTAATTA
1 AAAATTAATTA
73022209 TAAAATTAATTA
1 -AAAATTAATTA
73022221 AAA
1 AAA
73022224 TTCAACATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:73025024 original size:16 final size:18
Alignment explanation
Indices: 73024993--73025025 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
73024983 AACTCATCAC
73024993 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
73025011 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
73025026 AATTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:73030759 original size:29 final size:29
Alignment explanation
Indices: 73030720--73030780 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
73030710 CAAGGAAGTT
73030720 TGATATGAAGCTTTGATAGGTTTGAGTGA
1 TGATATGAAGCTTTGATAGGTTTGAGTGA
73030749 TGATATGAAGCTTTGATAGGTTTGAGTGA
1 TGATATGAAGCTTTGATAGGTTTGAGTGA
73030778 TGA
1 TGA
73030781 ATGGCCGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.31, T:0.38
Consensus pattern (29 bp):
TGATATGAAGCTTTGATAGGTTTGAGTGA
Found at i:73035235 original size:38 final size:39
Alignment explanation
Indices: 73035169--73035275 Score: 137
Period size: 38 Copynumber: 2.7 Consensus size: 39
73035159 TATTCGGATG
*
73035169 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCT-AAGGCATTTGTGCGAGTGACT
* *
73035209 A-ATTCCGGGCTAAG-CCTAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCTAAGGCATTTGTGCGAGTGACT
*
73035247 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGT-CCTAAGGCATTTG
73035276 AGCAAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 30 0.52
39 5 0.09
40 23 0.40
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCTAAGGCATTTGTGCGAGTGACT
Found at i:73035289 original size:40 final size:40
Alignment explanation
Indices: 73035169--73035298 Score: 128
Period size: 40 Copynumber: 3.3 Consensus size: 40
73035159 TATTCGGATG
* *
73035169 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGT-GACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CT
* * *
73035209 A-ATTCCGGGCTAAG--CCTAAGGCATTTGTGCGAGTTA-CT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCT
*
73035247 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCT
*
73035287 ATATCC-GGCTAA
1 ATAACCGGGCTAA
73035299 ATTCTGAAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
38 29 0.39
39 11 0.15
40 34 0.46
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCT
Found at i:73041455 original size:85 final size:85
Alignment explanation
Indices: 73041312--73041490 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
73041302 GGCCGGCCAT
73041312 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
73041377 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
73041397 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
73041462 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
73041482 GGGCATGGG
1 GAGCATGGG
73041491 CAATAAATTA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:73042809 original size:47 final size:47
Alignment explanation
Indices: 73042755--73043256 Score: 742
Period size: 47 Copynumber: 10.6 Consensus size: 47
73042745 TATTTGAATA
73042755 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
73042802 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
73042851 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
73042898 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
73042945 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
73042994 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGAGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
73043041 AATGTGAAAGTGCATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
73043090 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
73043137 AATGTGAACA-TGCAT-TATGAGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATG
*
73043183 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
73043230 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73043257 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 20, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
45 2 0.00
46 38 0.09
47 245 0.58
48 1 0.00
49 137 0.32
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:73042863 original size:96 final size:94
Alignment explanation
Indices: 73042755--73043256 Score: 751
Period size: 96 Copynumber: 5.3 Consensus size: 94
73042745 TATTTGAATA
73042755 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
73042820 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73042851 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
73042916 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
*
73042945 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
73043010 TATGTGATAAGGCCGAATGGCCAATGAGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73043041 AATGTGAAAGTGCATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
73043105 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73043137 AATGTGAACA-TGCAT-TATGAGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTATA
73043199 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73043230 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73043257 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 22, Indels: 18
0.90 0.05 0.04
Matches are distributed among these distances:
92 3 0.01
93 80 0.21
94 58 0.15
96 233 0.62
97 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:73043013 original size:143 final size:143
Alignment explanation
Indices: 73042755--73043256 Score: 768
Period size: 143 Copynumber: 3.5 Consensus size: 143
73042745 TATTTGAATA
*
73042755 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
73042820 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
73042885 AGCCGATGTGATG
131 GGCCAATGTGATG
* *
73042898 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
73042963 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73043028 GGCCAATGAGATG
131 GGCCAATGTGATG
73043041 AATGTGAAAGTGCATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--T
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* * * * * *
73043103 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCAT-TATGAGATAAGG-C
63 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC
73043165 TGAATGGCCAATGTGATG
127 T-AATGGCCAATGTGATG
* *
73043183 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
73043247 -ATGTGATAAG
66 TATGTGATAAG
73043257 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 19, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
139 1 0.00
140 52 0.16
141 2 0.01
142 39 0.12
143 193 0.58
144 1 0.00
145 43 0.13
146 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCAATGTGATG
Found at i:73043190 original size:22 final size:22
Alignment explanation
Indices: 73043120--73043190 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
73043110 TGATAAGGCC
73043120 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
* *
73043142 GAACAT-G-CATTATGAGAT-AAGGCT
1 G-A-ATGGCCA--ATGTGATGAATG-T
73043166 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
73043188 GAA
1 GAA
73043191 AGTGTATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
22 15 0.41
23 10 0.27
24 12 0.32
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25
Consensus pattern (22 bp):
GAATGGCCAATGTGATGAATGT
Found at i:73045894 original size:55 final size:57
Alignment explanation
Indices: 73045828--73045936 Score: 186
Period size: 55 Copynumber: 1.9 Consensus size: 57
73045818 CGGACTATGT
73045828 CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGATAAGTT-CGAAGAGCATTCATG
1 CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGATAAGTTCCGAAGAGCATTCATG
* *
73045884 CCCG-AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTC
1 CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGATAAGTTCCGAAGAGCATTC
73045937 GTGCTAGTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
55 34 0.68
56 16 0.32
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (57 bp):
CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGATAAGTTCCGAAGAGCATTCATG
Found at i:73045943 original size:40 final size:40
Alignment explanation
Indices: 73045884--73046132 Score: 367
Period size: 40 Copynumber: 6.3 Consensus size: 40
73045874 AGCATTCATG
73045884 CCCG-AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
*
73045923 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
*
73045963 CCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
* *
73046003 CCCGAAGAGCATTCATGCTAGTGATGTATGCGGGCTAAGT
1 CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
** * * *
73046043 TTCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-A
1 CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
* * * *
73046082 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
73046122 CCCGAAGAGCA
1 CCCGAAGAGCA
73046133 ATCATGCTGC
Statistics
Matches: 190, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.18
40 155 0.82
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
Found at i:73047544 original size:85 final size:85
Alignment explanation
Indices: 73047401--73047579 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
73047391 GGCCGGCCAT
73047401 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
73047466 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
73047486 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
73047551 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
73047571 GGGCATGGG
1 GAGCATGGG
73047580 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:73048973 original size:47 final size:47
Alignment explanation
Indices: 73048839--73049387 Score: 800
Period size: 47 Copynumber: 11.6 Consensus size: 47
73048829 TATTTGAATA
*
73048839 AATGTGAAAGTGTATATATGTG-TAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73048885 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73048934 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73048981 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73049028 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
73049077 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
73049124 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73049173 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73049220 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73049267 GATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
73049314 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73049361 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73049388 TCCCGAAGGG
Statistics
Matches: 478, Mismatches: 16, Indels: 17
0.94 0.03 0.03
Matches are distributed among these distances:
46 13 0.03
47 328 0.69
48 10 0.02
49 126 0.26
50 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:73048983 original size:96 final size:94
Alignment explanation
Indices: 73048839--73049387 Score: 800
Period size: 96 Copynumber: 5.8 Consensus size: 94
73048829 TATTTGAATA
*
73048839 AATGTGAAAGTGTATATATGTG-TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * *
73048903 TATGTGATAAGGCCTAATGGCCGATGCGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73048934 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
73048999 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
73049028 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
73049093 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
73049124 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
73049188 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
73049220 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
73049283 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73049314 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
73049379 TGTGATAAG
66 TGTGATAAG
73049388 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 19, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
93 2 0.00
94 189 0.44
95 22 0.05
96 213 0.50
97 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:73049035 original size:143 final size:141
Alignment explanation
Indices: 73048839--73049387 Score: 800
Period size: 143 Copynumber: 3.9 Consensus size: 141
73048829 TATTTGAATA
*
73048839 AATGTGAAAGTGTATATATGTG-TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * * *
73048903 TATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* *
73048968 AGCCGATGTGATG
129 GGCCAATGTGATG
* *
73048981 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
73049046 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
73049111 GGCCAATGTGATG
129 GGCCAATGTGATG
*
73049124 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
* * *
73049188 ATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGA
63 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGA
73049252 ATGGCCAATGTGATG
127 ATGGCCAATGTGATG
* * *
73049267 GATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
73049331 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73049388 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 23, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
140 2 0.01
141 96 0.26
142 22 0.06
143 210 0.56
144 2 0.01
145 43 0.11
146 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:73049312 original size:22 final size:22
Alignment explanation
Indices: 73049285--73049359 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
73049275 CATGTGTATG
73049285 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
73049307 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
73049332 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
73049354 TGTGAT
1 TGTGAT
73049360 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:73053243 original size:80 final size:80
Alignment explanation
Indices: 73053042--73053262 Score: 308
Period size: 80 Copynumber: 2.8 Consensus size: 80
73053032 TATTCGGATG
* *
73053042 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGGAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
*
73053104 CGTTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* *
73053121 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGC
73053185 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * *
73053201 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGG
73053263 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 63 0.49
80 65 0.51
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:73053262 original size:39 final size:40
Alignment explanation
Indices: 73053042--73053229 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
73053032 TATTCGGATG
* *
73053042 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
73053082 A-ATTCCGGGCTAAG-CCCGGAGGCGTTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73053121 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73053161 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73053201 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73053230 AGCAAGTAGC
Statistics
Matches: 137, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 33 0.24
40 104 0.76
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73054361 original size:50 final size:50
Alignment explanation
Indices: 73054299--73054530 Score: 268
Period size: 50 Copynumber: 4.6 Consensus size: 50
73054289 ATAGCTTCGA
*
73054299 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGG
* * * *** ** * * *
73054349 TCGCATGTGTAGTACTAAGTGTAGGCTAGTATGCGTACCCGATAGCTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTG-TTAGG
* * * *
73054400 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCC-AATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAAATTGTTAGG
* *
73054450 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGG
*
73054500 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
73054531 TGCATACCAG
Statistics
Matches: 150, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 2 0.01
50 110 0.73
51 36 0.24
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTGTTAGG
Found at i:73054412 original size:101 final size:101
Alignment explanation
Indices: 73054272--73054530 Score: 342
Period size: 101 Copynumber: 2.6 Consensus size: 101
73054262 GGGTGTTACA
*
73054272 GCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-
1 GCTACTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAT
* * *
73054336 CCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGTAG
66 CC-AATGGTTAGGTCACATGTGTAGTACTAAGTGCAG
* * *
73054373 GCTAGTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTAT
1 GCTACTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAT
*
73054438 CCAATGGTTAGGTCACGTGTGTAGTACTAAGTGCAG
66 CCAATGGTTAGGTCACATGTGTAGTACTAAGTGCAG
*** * * * * * *
73054474 GCTACTACATGTACCAGATTG-TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GCTACTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
73054531 TGCATACCAG
Statistics
Matches: 138, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
100 31 0.22
101 105 0.76
102 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (101 bp):
GCTACTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAT
CCAATGGTTAGGTCACATGTGTAGTACTAAGTGCAG
Found at i:73054539 original size:50 final size:50
Alignment explanation
Indices: 73054272--73054541 Score: 255
Period size: 50 Copynumber: 5.4 Consensus size: 50
73054262 GGGTGTTACA
* * *
73054272 GCTACTATGCATACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
1 GCTACTATGCATACCAGATAG-TTAGGTCACGTGTGTAGTACTAAGTGCAG
* * * * *
73054323 GCTACTA--CATGTACCAAATTGTTAGGTCGCATGTGTAGTACTAAGTGTAG
1 GCTACTATGCA--TACCAGATAGTTAGGTCACGTGTGTAGTACTAAGTGCAG
* * * * * *
73054373 GCTAGTATGCGTACCCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAA
1 GCTACTATGCATACCAGATAG-TTAGGTCACGTGTGTAGTACTAAGTGCAG
* *
73054424 GCTACTACGTGTAT-CCA-ATGGTTAGGTCACGTGTGTAGTACTAAGTGCAG
1 GCTACTA--TGCATACCAGATAGTTAGGTCACGTGTGTAGTACTAAGTGCAG
* * *
73054474 GCTACTA--CATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAG
1 GCTACTATGCA--TACCAGATAGTTAGGTCACGTGTGTAGTACTAAGTGCAG
73054524 GCTACTATGCATACCAGA
1 GCTACTATGCATACCAGA
73054542 GAGCTTCGGT
Statistics
Matches: 175, Mismatches: 31, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
46 1 0.01
48 1 0.01
49 5 0.03
50 114 0.65
51 46 0.26
52 5 0.03
53 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (50 bp):
GCTACTATGCATACCAGATAGTTAGGTCACGTGTGTAGTACTAAGTGCAG
Found at i:73057748 original size:30 final size:30
Alignment explanation
Indices: 73057690--73057749 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
73057680 TTCCCGAACC
* * *
73057690 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAATGTAATTATCCAAAAGTT
* *
73057720 TAGGGGAAAAAATGTAATTTTCCCAAAGTT
1 TAGGGGAAAAAATGTAATTATCCAAAAGTT
73057750 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATGTAATTATCCAAAAGTT
Found at i:73059640 original size:41 final size:41
Alignment explanation
Indices: 73059602--73059756 Score: 159
Period size: 41 Copynumber: 3.8 Consensus size: 41
73059592 AGAGGTACTA
* *
73059602 AAGTACAAATAGGGGCACATATTTGCAATT-ACGGGGTACCG
1 AAGTACAAACAGGGGCACATATGTGCAATTCA-GGGGTACCG
* ***
73059643 AAGTAAAAACAGGGGCATGCATGTGCAATTCAGGGGTACCG
1 AAGTACAAACAGGGGCACATATGTGCAATTCAGGGGTACCG
* * * * * *
73059684 GAGTACAAATAGAGGCACATAGGTGCAATTCAAGGGTACTG
1 AAGTACAAACAGGGGCACATATGTGCAATTCAGGGGTACCG
* **
73059725 AAGCACAAACAATGGCACATATGTGCAATTCA
1 AAGTACAAACAGGGGCACATATGTGCAATTCA
73059757 TTATTGTTCT
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 90 0.99
42 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.19
Consensus pattern (41 bp):
AAGTACAAACAGGGGCACATATGTGCAATTCAGGGGTACCG
Found at i:73065725 original size:42 final size:43
Alignment explanation
Indices: 73065610--73065755 Score: 127
Period size: 42 Copynumber: 3.4 Consensus size: 43
73065600 TCTGAAATAT
* * * *
73065610 CGTGTAAAACCGTGTCTGGGACACAGGCTTCGAT-TTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGA-A-TTA
* * ** *
73065654 TGTGTAAGACCATGTCTTGGACATCGGCATCG-TATCTG-ATTT
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATTA
* *
73065696 CGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTA
* *
73065739 CATGTAAGACCACGTCT
1 CGTGTAAGACCATGTCT
73065756 AGAATGTTGG
Statistics
Matches: 80, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 30 0.38
43 22 0.28
44 26 0.32
45 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTA
Found at i:73075796 original size:47 final size:47
Alignment explanation
Indices: 73075741--73075932 Score: 278
Period size: 47 Copynumber: 4.1 Consensus size: 47
73075731 TTAGGATTTT
* * *
73075741 AATGTGATGAATGTGAATATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
73075788 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
73075835 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
73075882 AATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
73075929 AATG
1 AATG
73075933 CGAAATGTGT
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 132 0.99
48 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:73076042 original size:46 final size:46
Alignment explanation
Indices: 73075906--73076042 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
73075896 GAACATGTAT
*
73075906 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
73075952 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
73075998 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73076043 TGTATATATA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 76 0.96
47 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:73082593 original size:41 final size:41
Alignment explanation
Indices: 73082524--73082695 Score: 242
Period size: 41 Copynumber: 4.2 Consensus size: 41
73082514 TCAAGCTTTA
* *
73082524 TGCCTAGTAGGC-TTATGCCGGTGAATTATATCAGGCTTAT
1 TGCCTAGCAGGCTTTATGCCGGTGTATTATATCAGGCTTAT
*
73082564 TGCCTAGCAGGCTTTATGCCGGTGTATTATTTCAGGCTTAT
1 TGCCTAGCAGGCTTTATGCCGGTGTATTATATCAGGCTTAT
* *
73082605 TGCCTAGCAGGCTTTATGCCGGTGTATTATTTCAGGCATAT
1 TGCCTAGCAGGCTTTATGCCGGTGTATTATATCAGGCTTAT
* *
73082646 TGCCTAGCAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT-T
1 TGCCTAGCAGGCTTTATGCCGGTGTATTATATC-AGGCTTAT
73082686 ATGCCTAGCA
1 -TGCCTAGCA
73082696 AATTTTATGT
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
40 13 0.11
41 108 0.89
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.35
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTATGCCGGTGTATTATATCAGGCTTAT
Found at i:73099023 original size:40 final size:40
Alignment explanation
Indices: 73098968--73099149 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
73098958 TATTTGAATG
73098968 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
73099008 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
73099048 ATATCCGGGCTAAGTCCCGAAAGAATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
73099088 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
73099128 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
73099150 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:73136721 original size:29 final size:29
Alignment explanation
Indices: 73136658--73136725 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
73136648 TAATCAACCG
73136658 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
73136687 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
73136716 CGCACACTTA
1 CGCACACTTA
73136726 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:73136838 original size:174 final size:174
Alignment explanation
Indices: 73136547--73136874 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
73136537 AACTCAAGGT
* * *
73136547 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACACTTAATGTAAATAATTTATA
*
73136612 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
73136677 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
73136721 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACACTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACACTTAATGTAAATAATTTATA
*
73136786 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
73136851 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
73136875 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACACTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:73136866 original size:29 final size:30
Alignment explanation
Indices: 73136827--73136905 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
73136817 CTTAATAATC
73136827 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
73136857 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
73136886 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73136906 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:73157530 original size:31 final size:31
Alignment explanation
Indices: 73157487--73157550 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73157477 CCTTTTCATA
73157487 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
73157518 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
73157549 TT
1 TT
73157551 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:73157818 original size:23 final size:23
Alignment explanation
Indices: 73157764--73157883 Score: 179
Period size: 23 Copynumber: 5.1 Consensus size: 23
73157754 CCTAGCCTCT
*
73157764 TTTAGTAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
73157786 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
73157811 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
73157834 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
73157857 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
73157881 TTT
1 TTT
73157884 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
23 48 0.52
24 38 0.41
25 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:73157823 original size:47 final size:49
Alignment explanation
Indices: 73157743--73157884 Score: 195
Period size: 47 Copynumber: 3.0 Consensus size: 49
73157733 GCTTTATCAT
* *
73157743 ATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTA
*
73157792 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC--TTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
*
73157838 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
73157885 GCACTTCCTC
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
46 22 0.26
47 37 0.44
48 11 0.13
49 14 0.17
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
Found at i:73157885 original size:24 final size:24
Alignment explanation
Indices: 73157743--73157885 Score: 188
Period size: 24 Copynumber: 6.0 Consensus size: 24
73157733 GCTTTATCAT
*
73157743 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
73157767 AGTAACTGGGGCA-AAGCCCTTTTTA
1 A-TAACTGGGGCATAAGCCC-TTTTG
*
73157792 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
73157815 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73157838 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73157862 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73157886 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 2, Indels: 12
0.89 0.02 0.10
Matches are distributed among these distances:
23 46 0.41
24 51 0.46
25 14 0.13
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:73157956 original size:9 final size:9
Alignment explanation
Indices: 73157942--73157998 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73157932 ATCTCATGTG
73157942 CATATCATA
1 CATATCATA
*
73157951 CATATCATGTG
1 CATATCA--TA
73157962 CATATCATA
1 CATATCATA
* *
73157971 CATGTCATGTG
1 CATATCA--TA
73157982 CATATCATA
1 CATATCATA
73157991 CATATCAT
1 CATATCAT
73157999 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:73157958 original size:20 final size:20
Alignment explanation
Indices: 73157930--73158000 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
73157920 GCATTTATGA
*
73157930 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73157950 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
73157970 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73157990 ACATATCATGT
1 ACATATCATGT
73158001 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:73157965 original size:11 final size:11
Alignment explanation
Indices: 73157935--73157989 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
73157925 TATGAACATC
73157935 TCATGTGCATA
1 TCATGTGCATA
*
73157946 TCA--TACATA
1 TCATGTGCATA
73157955 TCATGTGCATA
1 TCATGTGCATA
* *
73157966 TCA--TACATG
1 TCATGTGCATA
73157975 TCATGTGCATA
1 TCATGTGCATA
73157986 TCAT
1 TCAT
73157990 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73158065 original size:25 final size:25
Alignment explanation
Indices: 73158037--73158084 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
73158027 ATATATAAAC
* *
73158037 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
73158062 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
73158085 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:73164075 original size:18 final size:18
Alignment explanation
Indices: 73164052--73164089 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
73164042 AGGAGGAGCA
73164052 TGATGGACACCTGCAGAT
1 TGATGGACACCTGCAGAT
73164070 TGATGGACACCTGCAGAT
1 TGATGGACACCTGCAGAT
73164088 TG
1 TG
73164090 TTCTTCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (18 bp):
TGATGGACACCTGCAGAT
Found at i:73167363 original size:35 final size:36
Alignment explanation
Indices: 73167317--73167394 Score: 149
Period size: 35 Copynumber: 2.2 Consensus size: 36
73167307 TGCCGCCGAT
73167317 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTT-A
1 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
73167352 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
1 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
73167388 TCTCTTT
1 TCTCTTT
73167395 TTTGTATCGA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 34 0.81
36 8 0.19
ACGTcount: A:0.09, C:0.28, G:0.08, T:0.55
Consensus pattern (36 bp):
TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
Found at i:73170653 original size:40 final size:40
Alignment explanation
Indices: 73170597--73170825 Score: 304
Period size: 40 Copynumber: 5.7 Consensus size: 40
73170587 CGGATGATAA
*
73170597 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
73170637 TGAAGGCATTTGTGCTAGTGACTA-ATCTCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATC-CGGGCTAAGTCC
* * *
73170677 CAAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
* *
73170717 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
*
73170757 CGAAGGCATTTGTGCGAGCT-ACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCC
*
73170797 CGAAGGCATTTGAGCGAGT-AGCTATATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCC
73170826 AGTTAAATCC
Statistics
Matches: 173, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.02
40 165 0.95
41 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:73170814 original size:120 final size:119
Alignment explanation
Indices: 73170597--73170841 Score: 336
Period size: 120 Copynumber: 2.1 Consensus size: 119
73170587 CGGATGATAA
* * *
73170597 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAA
1 CGAAGGCATTTGTGCAAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
* * *
73170662 TCTCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTA-CTATATCCGAGCTAAGTCC
66 TCTCGAGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATATCC-AGCTAAATCC
*
73170717 CGAAGGCATTTGTGCAAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACT
1 CGAAGGCATTTGTGCAAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* *
73170780 ATATC-CGAGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCAGTTAAATCC
64 A-ATCTCGAGCTAAGTCCCAAAGGCATTTGAGCGAGTAGCTATATCCAGCTAAATCC
73170836 CGAAGG
1 CGAAGG
73170842 TACTTGGTTT
Statistics
Matches: 112, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
119 18 0.16
120 90 0.80
121 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (119 bp):
CGAAGGCATTTGTGCAAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
TCTCGAGCTAAGTCCCAAAGGCATTTGAGCGAGTAGCTATATCCAGCTAAATCC
Found at i:73176633 original size:46 final size:46
Alignment explanation
Indices: 73176561--73176728 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
73176551 TGTCGATGCC
* *
73176561 ATGTCCCAGACATGGTCTTACACTGGCTATCATCTAGTAGCCGATTA
1 ATGTCCCAAACATGGTCTTACACTGGCT-TCATCTAGTAGCCGATGA
* * *
73176608 ATGTCCCAAACAT-GTCTTACACTGGCTTACGTCTCG-AGGCCGATGC
1 ATGTCCCAAACATGGTCTTACACTGGCTT-CATCTAGTA-GCCGATGA
* * * * *
73176654 ATGTCCTAAACAT-GTCTTACACTAGATCTCATCTCAAT-GTCGATGA
1 ATGTCCCAAACATGGTCTTACACTGGCT-TCATCT-AGTAGCCGATGA
73176700 CATGTCCCAAACATGGTCTTACACTGGCT
1 -ATGTCCCAAACATGGTCTTACACTGGCT
73176729 CACTAACAAA
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
45 2 0.02
46 59 0.60
47 25 0.26
48 12 0.12
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGTCCCAAACATGGTCTTACACTGGCTTCATCTAGTAGCCGATGA
Found at i:73182528 original size:40 final size:40
Alignment explanation
Indices: 73182454--73182624 Score: 256
Period size: 40 Copynumber: 4.3 Consensus size: 40
73182444 GCTACTCACT
*
73182454 CAAATGTCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
73182493 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
73182533 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
73182573 CAAATGCCTTCGGGACTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
73182613 CAAATGCCTTCG
1 CAAATGCCTTCG
73182625 TTATCATCCG
Statistics
Matches: 121, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 16 0.13
40 105 0.87
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:73182616 original size:80 final size:79
Alignment explanation
Indices: 73182421--73182624 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 79
73182411 AAACCAAGTA
* * * *
73182421 CCTTCGGGATTTAA-CCGGATATAGCT-ACTCA-CTCAAATGTCTTCGGGACTAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGAATATAG-TAACT-AGCACAAATGCCTTCGGGACTAGCCCGGTTATA
73182483 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
** * *
73182499 CCTTCGGGACTTAACCCGGTTATAGTAACTCGGACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAATGCCTTCGGGAC-TAGCCCGGTTATAG
73182564 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
73182579 CCTTCGGGACTTAGCCCAGAAT-TAGTCACTAGCACAAATGCCTTCG
1 CCTTCGGGACTTAACCC-GAATATAGTAACTAGCACAAATGCCTTCG
73182625 TTATCATCCG
Statistics
Matches: 109, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
78 14 0.13
79 27 0.25
80 66 0.61
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:73184523 original size:40 final size:40
Alignment explanation
Indices: 73184440--73184616 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
73184430 CAACCAAGTA
** *
73184440 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
73184478 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73184518 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
73184558 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73184598 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73184617 TTATCATCCA
Statistics
Matches: 128, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
38 13 0.10
39 14 0.11
40 99 0.77
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73188164 original size:39 final size:40
Alignment explanation
Indices: 73187960--73188180 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
73187950 TTGAATGCTG
* * * * * *
73187960 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
73188000 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
73188040 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
73188080 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
73188120 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
73188159 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
73188181 CTTGAACGAG
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:73188202 original size:79 final size:80
Alignment explanation
Indices: 73188035--73188217 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
73188025 GTGCGAGATA
* * *
73188035 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
73188100 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
73188115 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
73188179 CACTT-GAACGAGGAG
66 CA-TTCGAACGAGGAG
* * *
73188194 CTATATCC-GGTTAAATTCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
73188218 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 13 0.15
79 44 0.51
80 29 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:73198462 original size:40 final size:40
Alignment explanation
Indices: 73198392--73198757 Score: 539
Period size: 40 Copynumber: 9.2 Consensus size: 40
73198382 CCTTCAGGGT
*
73198392 TTAG-CCGGATATAGCT-ACT-GCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
73198430 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
73198470 TTAGCCCGGATATAGT-ACTTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGAC
* *
73198510 TTAGCCCGGATATAGTAACTCGCACCAATGCCTTCAGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
73198550 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
73198590 TTAGCCGGGATATAGT-ACTTCGTACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGAC
*
73198630 TTAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
73198670 TTAGCCCGGATATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
73198710 TT-GCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
73198749 TTAGCCCGG
1 TTAGCCCGG
73198758 TTATCATCCA
Statistics
Matches: 299, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
38 6 0.02
39 49 0.16
40 240 0.80
41 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:73216585 original size:62 final size:64
Alignment explanation
Indices: 73216468--73216587 Score: 172
Period size: 63 Copynumber: 1.9 Consensus size: 64
73216458 ATAAATGGTC
* *
73216468 AAATGGAGAAATAGGAAACATTTGGGAATGATTATGGCTATCTCCAAAATGAAAATGAAAATGA
1 AAATGGAGAAATAGGAAACATTTGGAAATGAATATGGCTATCTCCAAAATGAAAATGAAAATGA
* * * *
73216532 AAATGGAGAAAT-GGAATCATTTGGAAATGAATGTGGTTTTCT-CAAAATGAAAATGA
1 AAATGGAGAAATAGGAAACATTTGGAAATGAATATGGCTATCTCCAAAATGAAAATGA
73216588 CTTGAAAATA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
62 14 0.28
63 24 0.48
64 12 0.24
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.26
Consensus pattern (64 bp):
AAATGGAGAAATAGGAAACATTTGGAAATGAATATGGCTATCTCCAAAATGAAAATGAAAATGA
Found at i:73227350 original size:46 final size:46
Alignment explanation
Indices: 73227286--73227373 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
73227276 AATATATATG
* *
73227286 TATATATAACCGAAGCTATTTTGATCACGCACACTAAGTGCAAATA
1 TATATATAACCGAAGCTATCTCGATCACGCACACTAAGTGCAAATA
* **
73227332 TATATATAGCCGAAGCTATCTCGATTTCGCACACTAAGTGCA
1 TATATATAACCGAAGCTATCTCGATCACGCACACTAAGTGCA
73227374 CATAATTAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (46 bp):
TATATATAACCGAAGCTATCTCGATCACGCACACTAAGTGCAAATA
Found at i:73233442 original size:20 final size:21
Alignment explanation
Indices: 73233417--73233456 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73233407 CTCTTGAAAC
*
73233417 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
73233437 AGGGCAACACGCCCATGTGG
1 AGGGCAACACGCCCATGTGG
73233457 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:73234791 original size:48 final size:46
Alignment explanation
Indices: 73234720--73234885 Score: 154
Period size: 48 Copynumber: 3.5 Consensus size: 46
73234710 AAGCTGACGC
* *
73234720 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATTGCGAGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTT-TATATT-CGAGGCCGATG
* * * * * * *
73234768 CATGTCCTAGACATGTCTTACACTAGCTCTTGT-CTCAATGTCAATA
1 CATGTCCTAGACATGTCTTACACTAGCT-TTATATTCGAGGCCGATG
* * * *
73234814 CATGTCCTAGACATGTCTTACACTGGCTTAAATATCTTGAGGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTT-TATAT-TCGAGGCCGATG
*
73234862 CATGTCCAAGACATGTCTTACACT
1 CATGTCCTAGACATGTCTTACACT
73234886 GGCTCTCATG
Statistics
Matches: 93, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
45 1 0.01
46 34 0.37
47 1 0.01
48 56 0.60
49 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTAGCTTTATATTCGAGGCCGATG
Found at i:73234834 original size:94 final size:94
Alignment explanation
Indices: 73234720--73234891 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 94
73234710 AAGCTGACGC
** *
73234720 CATGTCCCAGACAGGTCTTACACTAGCTTGTATAT-TGCGAGGCCGATGCATGTCCTAGACATGT
1 CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCT-CGAGGCCGATGCATGTCCAAGACATGT
73234784 CTTACACTAGCTCTTGTCTCAATGTCAATA
65 CTTACACTAGCTCTTGTCTCAATGTCAATA
* * * * *
73234814 CATGTCCTAGACATGTCTTACACTGGCTTAAATATCTTGAGGCTGATGCATGTCCAAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCGATGCATGTCCAAGACATGTC
*
73234879 TTACACTGGCTCT
66 TTACACTAGCTCT
73234892 CATGCTTTGG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 67 0.99
95 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCGATGCATGTCCAAGACATGTC
TTACACTAGCTCTTGTCTCAATGTCAATA
Found at i:73239175 original size:94 final size:94
Alignment explanation
Indices: 73239014--73239524 Score: 817
Period size: 96 Copynumber: 5.4 Consensus size: 94
73239004 CCCTTCGGGA
* * * * * * * *
73239014 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73239079 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
73239108 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73239173 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
73239202 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
73239267 ACTTTCACATCCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
73239298 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCCTTTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
73239363 ACACTTTCACATTCATCACATCGGCCAGTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
73239396 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73239461 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
73239490 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
73239525 AGAATCCTAA
Statistics
Matches: 393, Mismatches: 19, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 162 0.41
96 185 0.47
98 45 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:73239235 original size:49 final size:47
Alignment explanation
Indices: 73239014--73239524 Score: 817
Period size: 47 Copynumber: 10.7 Consensus size: 47
73239004 CCCTTCGGGA
* * * * * *
73239014 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73239061 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73239108 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73239155 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73239202 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73239251 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73239298 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCCTTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73239347 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAGTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73239396 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73239443 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73239490 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
73239525 AGAATCCTAA
Statistics
Matches: 438, Mismatches: 21, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 300 0.68
49 137 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73243492 original size:40 final size:40
Alignment explanation
Indices: 73243223--73243483 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
73243213 CACATGATTA
* * * *
73243223 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
73243263 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
73243303 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
73243343 CTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
73243383 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
73243423 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
73243463 CTCTTCGGGATTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
73243484 CATTTCACTC
Statistics
Matches: 198, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 198 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:73243492 original size:120 final size:120
Alignment explanation
Indices: 73243223--73243492 Score: 416
Period size: 120 Copynumber: 2.2 Consensus size: 120
73243213 CACATGATTA
** * * * *** *
73243223 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCACGGATACA
73243288 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
66 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
*
73243343 CTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGATAC
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG-CACGGATAC
73243407 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
65 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* *
73243463 CTCTTCGGGATTTAGCCCGGACATTTCACT
1 CTCTTCGGGATTTAGCCCGGATATATCACT
73243493 CTCAATTCTC
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
120 135 0.99
121 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCACGGATACA
TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
Found at i:73245118 original size:49 final size:47
Alignment explanation
Indices: 73244944--73245407 Score: 741
Period size: 47 Copynumber: 9.7 Consensus size: 47
73244934 CCATTCGGGA
* * * * * *
73244944 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73244991 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73245038 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73245085 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73245134 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73245181 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73245230 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAGTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73245279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73245326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73245373 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
73245408 AGAATCCTAA
Statistics
Matches: 395, Mismatches: 17, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 254 0.64
49 140 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73245141 original size:96 final size:96
Alignment explanation
Indices: 73244944--73245386 Score: 741
Period size: 96 Copynumber: 4.6 Consensus size: 96
73244934 CCATTCGGGA
* * * * * * * *
73244944 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
73245007 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73245038 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
73245103 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73245134 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
73245199 ACTTTCACATTCATCGCATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
73245230 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAGTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
73245293 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
73245326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
73245387 GCATGTTCAC
Statistics
Matches: 330, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 92 0.28
96 192 0.58
98 46 0.14
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73253036 original size:21 final size:21
Alignment explanation
Indices: 73252987--73253053 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
73252977 CCTCTTTGAA
* * *
73252987 CCATAACCAATTCGTACCAAATA
1 CCAT-ACCATTTCATACC-AATT
*
73253010 CCATACTATTTCATACCAATT
1 CCATACCATTTCATACCAATT
* *
73253031 CCATACCATTTCGTGCCAATT
1 CCATACCATTTCATACCAATT
73253052 CC
1 CC
73253054 CAAATACCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
21 23 0.62
22 10 0.27
23 4 0.11
ACGTcount: A:0.33, C:0.33, G:0.04, T:0.30
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:73253379 original size:12 final size:13
Alignment explanation
Indices: 73253352--73253385 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
73253342 ATAGGTGCGT
*
73253352 AAAAAAAAGTTCG
1 AAAAAAAAATTCG
73253365 AAAAAAAAATT-G
1 AAAAAAAAATTCG
73253377 AAAAAAAAA
1 AAAAAAAAA
73253386 ATTGCATACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:73259949 original size:21 final size:21
Alignment explanation
Indices: 73259900--73259966 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
73259890 CCTCTTTGAA
* * *
73259900 CCATAACCAATTCGTACCAAATA
1 CCAT-ACCATTTCATACC-AATT
*
73259923 CCATACTATTTCATACCAATT
1 CCATACCATTTCATACCAATT
* *
73259944 CCATACCATTTCGTGCCAATT
1 CCATACCATTTCATACCAATT
73259965 CC
1 CC
73259967 CAAATACCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
21 23 0.62
22 10 0.27
23 4 0.11
ACGTcount: A:0.33, C:0.33, G:0.04, T:0.30
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:73265539 original size:5 final size:5
Alignment explanation
Indices: 73265529--73265685 Score: 314
Period size: 5 Copynumber: 31.4 Consensus size: 5
73265519 CATACATTTA
73265529 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
73265579 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
73265629 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
73265679 TATAT TA
1 TATAT TA
73265686 GTTTAATAAT
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 152 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:73272602 original size:34 final size:34
Alignment explanation
Indices: 73272564--73272654 Score: 119
Period size: 34 Copynumber: 2.7 Consensus size: 34
73272554 AATGCAGTCT
* * *
73272564 GGGCCTAAGCCCATTTCAGTTTCAGTAACAATTC
1 GGGCCTTAGCCCATCTCAGTTTCAATAACAATTC
* *
73272598 GGGCCTTAGCCCATCTCAGTTTCAATAGCAGTTC
1 GGGCCTTAGCCCATCTCAGTTTCAATAACAATTC
* *
73272632 AGGCCTTAGCCCATCTCAATTTC
1 GGGCCTTAGCCCATCTCAGTTTC
73272655 TGTATCAGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (34 bp):
GGGCCTTAGCCCATCTCAGTTTCAATAACAATTC
Found at i:73273978 original size:31 final size:31
Alignment explanation
Indices: 73273927--73274006 Score: 117
Period size: 31 Copynumber: 2.5 Consensus size: 31
73273917 CTCAACATGT
73273927 ACTGGGCC-ATAGCCCTTTTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCATATTTCATAAC
**
73273959 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATAAC
73273990 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
73274007 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
31 34 0.76
32 10 0.22
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATAAC
Found at i:73274251 original size:24 final size:24
Alignment explanation
Indices: 73274200--73274343 Score: 204
Period size: 23 Copynumber: 6.0 Consensus size: 24
73274190 GCTTTATCAT
*
73274200 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73274225 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73274249 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73274272 ATAACTGGGGCAAAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73274295 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
73274320 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73274344 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
23 44 0.40
24 30 0.28
25 35 0.32
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73274417 original size:20 final size:20
Alignment explanation
Indices: 73274392--73274438 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
73274382 TTATAATTAC
73274392 ATCATGTACATATCATACAT
1 ATCATGTACATATCATACAT
*
73274412 ATCATGTGCATATCATACAT
1 ATCATGTACATATCATACAT
*
73274432 ACCATGT
1 ATCATGT
73274439 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCATGTACATATCATACAT
Found at i:73274507 original size:25 final size:25
Alignment explanation
Indices: 73274475--73274522 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73274465 ATACATAAAC
* * *
73274475 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73274500 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73274523 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73278661 original size:79 final size:81
Alignment explanation
Indices: 73278559--73278742 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
73278549 GCTCCTCGTT
* *
73278559 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
73278621 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
* **
73278639 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACGAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
73278703 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
73278719 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73278743 CATCATCCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 14 0.15
79 55 0.60
80 22 0.24
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:73278676 original size:39 final size:41
Alignment explanation
Indices: 73278559--73278742 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
73278549 GCTCCTCGTT
* *
73278559 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
73278599 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
73278639 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * * *
73278678 CGAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
73278719 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73278743 CATCATCCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 47 0.37
40 66 0.52
41 11 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:73285197 original size:31 final size:31
Alignment explanation
Indices: 73285146--73285225 Score: 108
Period size: 31 Copynumber: 2.5 Consensus size: 31
73285136 CTCAACATGT
73285146 ACTGGGCC-ATAGCCCTTTTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCATATTTCATAAC
* **
73285178 ACTGGGCCGAAGCCTTTTCATATTTCCTATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATAAC
73285209 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
73285226 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
31 33 0.75
32 10 0.23
33 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATAAC
Found at i:73288424 original size:27 final size:27
Alignment explanation
Indices: 73288380--73288432 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
73288370 AATTAATAAA
* * *
73288380 CCTAGACCTAATTGCAATGGCCCAAAT
1 CCTAGACCCAACTACAATGGCCCAAAT
73288407 CCTAGACCCAACTACAATGGCCCAAA
1 CCTAGACCCAACTACAATGGCCCAAA
73288433 CTCGAGACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.34, G:0.13, T:0.17
Consensus pattern (27 bp):
CCTAGACCCAACTACAATGGCCCAAAT
Found at i:73302887 original size:176 final size:176
Alignment explanation
Indices: 73302435--73302901 Score: 670
Period size: 176 Copynumber: 2.6 Consensus size: 176
73302425 TGGTGAAGTC
*
73302435 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATTG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCG
* *
73302500 GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTT-TGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GCAATGGAGCAGATTTTAGCCACTAGCCTTATCT-TTCTGAGGTAGTAAGAGAACAGGTTGAAGA
73302564 TGGTGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
130 T-GTGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * * *** *
73302612 AGGTCTTATTTCCCTAAGCAGTAGTGGAACA-AACCAAAGACGATAAATCTTATCTCCATGTACC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGA-GGCGAATCTTATCTCCATGTATC
* * * * *
73302676 AGCAATGGAGCAGATTTAAGCCACTAACCTTATCTTTCTAAGGTAGTAAGATAACAGGTTGAAGA
65 GGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAGTAAGAGAACAGGTTGAAGA
73302741 T-TGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
130 TGTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
*
73302788 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAACCTTATCTCCATGTATCG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCG
* * ** *
73302853 GCAATGGAGCAGATTTTAGCCATTGGTTTTATCTTCCTGAGGTAGTAAG
66 GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAGTAAG
73302902 GAAGCAGACT
Statistics
Matches: 250, Mismatches: 36, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
175 2 0.01
176 139 0.56
177 109 0.44
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (176 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCG
GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAGTAAGAGAACAGGTTGAAGAT
GTGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:73302903 original size:133 final size:133
Alignment explanation
Indices: 73302748--73303006 Score: 455
Period size: 133 Copynumber: 1.9 Consensus size: 133
73302738 AGATTGAGTC
*
73302748 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGT
1 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGT
*
73302813 GGAGCAGATCGAAAGAGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCATTG
66 GGAGCAGATCGAAAGAGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCATTG
73302878 GTT
131 GTT
* * *
73302881 TTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAGGTTGAAGATCTTATCTCCCTAAGTAGTAGT
1 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGT
* *
73302946 GGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCC
66 GGAGCAGATCGAAAGAGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCC
73303007 CAAGCCTTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 119 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (133 bp):
TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAAGAGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCATTG
GTT
Found at i:73303059 original size:309 final size:309
Alignment explanation
Indices: 73302567--73303177 Score: 786
Period size: 309 Copynumber: 2.0 Consensus size: 309
73302557 TTGAAGATGG
* * *
73302567 TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGGTCTTATTTCCCTAAGCA
1 TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCA
*
73302632 GTAGTGGAACAAACCAAAGACGATAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGC
66 GTAGTGGAACAAACCAAAGACGACAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGC
** * * * * *
73302697 CACTAACCTTATCTTTCTAAGGTAGTAAGATAACAGGTTGAAGATTGAGTCTTATCTTCCTGAGG
131 CACTAACCTTATCTCCCTAAGGTAGCAAGAGAACAGGTTCAAGATTGAGTCTTATATTCCTGAAG
* *
73302762 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
196 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTAGTGGAACAGATC-AAA
73302827 GA-GGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCAT
260 GATGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCAT
* * * *
73302876 TGGTTTTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAGGTTGAAGATCTTATCTCCCTAAGTA
1 TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCA
* * * * * ***
73302941 GTAGTGGAGCAGATCGAAAGA-GGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAG
66 GTAGTGGAACA-AACCAAAGACGACAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAG
* * *
73303005 CC-C-AAGCCTTGTCTCCCTGAA-GTGGCAATG-GAGCAGGTTCAAGA-TGCAAGTCTTATATTC
130 CCACTAA-CCTTATCTCCCT-AAGGTAGCAA-GAGAACAGGTTCAAGATTG--AGTCTTATATTC
* ** * *
73303065 CTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATTTTTCTAAACATTTGTGGAACAGA
190 CTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTAGTGGAACAGA
* * *
73303130 TCAAGGATGGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTT
255 TCAAAGATGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTT
73303178 AGACCACCAG
Statistics
Matches: 259, Mismatches: 36, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
307 4 0.02
308 30 0.12
309 218 0.84
310 7 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (309 bp):
TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCA
GTAGTGGAACAAACCAAAGACGACAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGC
CACTAACCTTATCTCCCTAAGGTAGCAAGAGAACAGGTTCAAGATTGAGTCTTATATTCCTGAAG
TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAACAGTAGTGGAACAGATCAAAG
ATGGCGAACCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCAT
Found at i:73303516 original size:27 final size:27
Alignment explanation
Indices: 73303472--73303524 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
73303462 AATTAATAAA
* * *
73303472 CCTAGACCTAATTGCAATGGCCCAAAT
1 CCTAGACCCAACTACAATGGCCCAAAT
73303499 CCTAGACCCAACTACAATGGCCCAAA
1 CCTAGACCCAACTACAATGGCCCAAA
73303525 CTCGAGACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.34, G:0.13, T:0.17
Consensus pattern (27 bp):
CCTAGACCCAACTACAATGGCCCAAAT
Found at i:73305358 original size:8 final size:8
Alignment explanation
Indices: 73305345--73305375 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
73305335 AATTATTCCA
73305345 AATTCATC
1 AATTCATC
73305353 AATTCATC
1 AATTCATC
73305361 AATTCATC
1 AATTCATC
73305369 AATTCAT
1 AATTCAT
73305376 ATATTGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (8 bp):
AATTCATC
Found at i:73311443 original size:21 final size:21
Alignment explanation
Indices: 73311419--73311469 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
73311409 TATGGTCCAA
73311419 GGGACATGCCCGTGTGACCCT
1 GGGACATGCCCGTGTGACCCT
73311440 GGGACATGCCCGTGTGACCCT
1 GGGACATGCCCGTGTGACCCT
73311461 GGGACATGC
1 GGGACATGC
73311470 TACAGGTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (21 bp):
GGGACATGCCCGTGTGACCCT
Found at i:73315936 original size:39 final size:39
Alignment explanation
Indices: 73315879--73316038 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
73315869 AAGCAAGACA
*
73315879 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73315918 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGTCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73315957 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73315996 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73316035 CTGG
1 CTGG
73316039 TAACATAATT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:73319057 original size:22 final size:21
Alignment explanation
Indices: 73319005--73319058 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
73318995 CGACCTCTAG
**
73319005 CACGGGCGTGTCCTAGGGTCA
1 CACGGGCGTGTCCTAGGACCA
* * *
73319026 CATGGTCGTGTCCCTTGGACCA
1 CACGGGCGTGT-CCTAGGACCA
73319048 CACGGGCGTGT
1 CACGGGCGTGT
73319059 GAGCCCTGCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.13, C:0.30, G:0.35, T:0.22
Consensus pattern (21 bp):
CACGGGCGTGTCCTAGGACCA
Found at i:73323114 original size:16 final size:16
Alignment explanation
Indices: 73323080--73323119 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
73323070 AATAGATAAA
* *
73323080 TTATCTAATTAATTTT
1 TTATCTAATTAAATAT
*
73323096 TTATTTAATTAAATAT
1 TTATCTAATTAAATAT
73323112 TTATCTAA
1 TTATCTAA
73323120 ATTTTAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATCTAATTAAATAT
Found at i:73325045 original size:24 final size:24
Alignment explanation
Indices: 73325017--73325063 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
73325007 TATATATACC
73325017 AATTCAATCA-ATA-TAAATTCAATA
1 AATTC-ATCACATACTAAA-TCAATA
73325041 AATTCATCACATACTAAATCAAT
1 AATTCATCACATACTAAATCAAT
73325064 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCATCACATACTAAATCAATA
Found at i:73330265 original size:3 final size:3
Alignment explanation
Indices: 73330257--73330283 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
73330247 AATTCAACTT
73330257 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
73330284 ATAAGATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:73331569 original size:23 final size:23
Alignment explanation
Indices: 73331543--73331586 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
73331533 CAAAATAAAA
* *
73331543 CAAATTGATTAAAAATTAAAAGT
1 CAAAATGAATAAAAATTAAAAGT
*
73331566 CAAAATGAATAAATATTAAAA
1 CAAAATGAATAAAAATTAAAA
73331587 AAATAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (23 bp):
CAAAATGAATAAAAATTAAAAGT
Found at i:73334415 original size:42 final size:42
Alignment explanation
Indices: 73334346--73334432 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
73334336 TCGTAAGCTA
* *
73334346 TGTGCTAGCCAGTGAAACCCACTGACTTG-GCTCACATGGCCG
1 TGTGCTAGCCAGTGAAACCCACGGACTTGAG-ACACATGGCCG
* * *
73334388 TGTGCTAGCCTGTGCAACTCACGGACTTGAGACACATGGCCG
1 TGTGCTAGCCAGTGAAACCCACGGACTTGAGACACATGGCCG
73334430 TGT
1 TGT
73334433 CTCAACCCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 38 0.97
43 1 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (42 bp):
TGTGCTAGCCAGTGAAACCCACGGACTTGAGACACATGGCCG
Found at i:73336310 original size:42 final size:43
Alignment explanation
Indices: 73336264--73336355 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 43
73336254 TGTCCTTACC
* *
73336264 CGTGTGGCTCAGACGGT-CTAGACACACGCCTATGCCCT-TGCT
1 CGTGTGGCTCACACGGTCCGAGA-ACACGCCTATGCCCTCTGCT
* * * *
73336306 CGTGTGACTCACACGGTCCGGGAACATGCCTATGTCCTCTGCT
1 CGTGTGGCTCACACGGTCCGAGAACACGCCTATGCCCTCTGCT
73336349 CGTGTGG
1 CGTGTGG
73336356 TTCTAAAAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
42 28 0.68
43 13 0.32
ACGTcount: A:0.15, C:0.32, G:0.28, T:0.25
Consensus pattern (43 bp):
CGTGTGGCTCACACGGTCCGAGAACACGCCTATGCCCTCTGCT
Found at i:73342244 original size:21 final size:21
Alignment explanation
Indices: 73342220--73342263 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
73342210 CTCATGTTAG
*
73342220 TTTCATCTTCTTTC-CCTTTTC
1 TTTC-TCTTCTTTCTCATTTTC
*
73342241 TTTCTTTTCTTTCTCATTTTC
1 TTTCTCTTCTTTCTCATTTTC
73342262 TT
1 TT
73342264 GTTGTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTCTCTTCTTTCTCATTTTC
Found at i:73348974 original size:112 final size:112
Alignment explanation
Indices: 73348777--73349000 Score: 394
Period size: 112 Copynumber: 2.0 Consensus size: 112
73348767 ATTGGCTTCA
*
73348777 AATGGTTTCTTCCGGTTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCA
1 AATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCA
*
73348842 AAGCCACATATTTATTTCTCAACTATTTAATCTCGCGAGCTAAAATC
66 AAGCCACATATTTATTTCTCAACTATTTAATCCCGCGAGCTAAAATC
* *
73348889 AATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTTGATGTCATAAAACCTTTACCA
1 AATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCA
* *
73348954 AAGCCACATCTTTATTTCTCAACTGTTTAATCCCGCGAGCTAAAATC
66 AAGCCACATATTTATTTCTCAACTATTTAATCCCGCGAGCTAAAATC
73349001 TTGACCAGTT
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
112 106 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.34
Consensus pattern (112 bp):
AATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCA
AAGCCACATATTTATTTCTCAACTATTTAATCCCGCGAGCTAAAATC
Found at i:73353924 original size:14 final size:15
Alignment explanation
Indices: 73353905--73353937 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
73353895 TATGTTTATT
73353905 ATGTGTG-AAGTATC
1 ATGTGTGAAAGTATC
73353919 ATGTGTGAAAGTATC
1 ATGTGTGAAAGTATC
73353934 ATGT
1 ATGT
73353938 CTTAATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (15 bp):
ATGTGTGAAAGTATC
Found at i:73355453 original size:24 final size:24
Alignment explanation
Indices: 73355423--73355474 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
73355413 CTAAGAGTTA
73355423 AATTAATATGGCAAAGAGAATGTT
1 AATTAATATGGCAAAGAGAATGTT
73355447 AATTAATATGGCAAAGAGAATGTT
1 AATTAATATGGCAAAGAGAATGTT
73355471 AATT
1 AATT
73355475 TTATTTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (24 bp):
AATTAATATGGCAAAGAGAATGTT
Found at i:73355959 original size:84 final size:84
Alignment explanation
Indices: 73355847--73356073 Score: 366
Period size: 84 Copynumber: 2.7 Consensus size: 84
73355837 TTTCGGGTTT
* *
73355847 TGAGCCTAGCAGGCATAATACCAGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGCT
1 TGAGCCTAGCAGGCATAATGCCAGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCT
73355912 GGTGAATAGTATCGGGCTC
66 GGTGAATAGTATCGGGCTC
*
73355931 TGAGCCTAGCAGGCATAATGCC-GATGAAATGATATCGGACTTAAAGGTCCAGCAAGCTTTAAGC
1 TGAGCCTAGCAGGCATAATGCCAG-TGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGC
*
73355995 TGGTGAATATTATCGGGCTC
65 TGGTGAATAGTATCGGGCTC
* * * *
73356015 CGAGCCTAGTAGGCGTAATGCCAGTGAAATGATATCGGACTTAAAGGTCTAGCAGGCTT
1 TGAGCCTAGCAGGCATAATGCCAGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTT
73356074 ATTGCCGGTG
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
83 1 0.01
84 130 0.98
85 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (84 bp):
TGAGCCTAGCAGGCATAATGCCAGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCT
GGTGAATAGTATCGGGCTC
Found at i:73356009 original size:42 final size:42
Alignment explanation
Indices: 73355879--73356010 Score: 103
Period size: 42 Copynumber: 3.1 Consensus size: 42
73355869 AGTGAAATGA
* * *
73355879 TATCAGACTTAAAGGTCTAGCAAGCTTTAAGCTGGTGAATAG
1 TATCGGACTTAAAGGTCCAGCAAGCTTTAAGCTGGTGAATAT
* * * * * *
73355921 TATCGGGCTCT-GA-G-CCTAGCAGGC-ATAATGCCGATGAA-AT
1 TATCGGACT-TAAAGGTCC-AGCAAGCTTTAA-GCTGGTGAATAT
73355961 GATATCGGACTTAAAGGTCCAGCAAGCTTTAAGCTGGTGAATAT
1 --TATCGGACTTAAAGGTCCAGCAAGCTTTAAGCTGGTGAATAT
73356005 TATCGG
1 TATCGG
73356011 GCTCCGAGCC
Statistics
Matches: 65, Mismatches: 15, Indels: 20
0.65 0.15 0.20
Matches are distributed among these distances:
40 5 0.08
41 15 0.23
42 23 0.35
43 15 0.23
44 7 0.11
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (42 bp):
TATCGGACTTAAAGGTCCAGCAAGCTTTAAGCTGGTGAATAT
Found at i:73365466 original size:67 final size:67
Alignment explanation
Indices: 73365377--73365575 Score: 362
Period size: 67 Copynumber: 3.0 Consensus size: 67
73365367 AGTGACTAAT
*
73365377 AAGGAGGGATTTAAAGGAAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
1 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
73365442 GC
66 GC
* *
73365444 AATGAGGGATTTAAAGGCAATTAGATCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
1 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
73365509 GC
66 GC
*
73365511 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTATATGGGCTGGACGGTTTGGGCAAGAAAATCA
1 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
73365576 ACAAAAGAGA
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 126 1.00
ACGTcount: A:0.36, C:0.12, G:0.29, T:0.23
Consensus pattern (67 bp):
AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
GC
Found at i:73366569 original size:47 final size:47
Alignment explanation
Indices: 73366505--73366705 Score: 188
Period size: 47 Copynumber: 4.2 Consensus size: 47
73366495 CATGGCAACA
* *
73366505 TGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGG
1 TGTGATATGTG-CTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
* * * *
73366553 TGGGATATGAGCTTCCGTATAAGACCATATCTGCGATATGGCATCGG
1 TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
* * ** * * *
73366600 TATGATATGTCCTTCTATGTAAGACCATATCTGGGATATGGCATCAG
1 TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
* * * * * * *
73366647 TGTGATATGTG-ATCCCTGTAAGACCATGGCTAGGCTATGGCTTCAGTG
1 TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATC-G-G
73366695 TGTGATATGTG
1 TGTGATATGTG
73366706 ACTATGTGCA
Statistics
Matches: 125, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
46 25 0.20
47 79 0.63
48 21 0.17
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (47 bp):
TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
Found at i:73368654 original size:11 final size:10
Alignment explanation
Indices: 73368638--73368678 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 10
73368628 AAACTTAACC
73368638 AAATAAAATAA
1 AAATAAAA-AA
73368649 AAATAAAAATA
1 AAATAAAAA-A
73368660 AAATAAAAAA
1 AAATAAAAAA
73368670 TAAATAAAA
1 -AAATAAAA
73368679 CTAATACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.07
11 26 0.93
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AAATAAAAAA
Found at i:73368658 original size:17 final size:16
Alignment explanation
Indices: 73368638--73368678 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
73368628 AAACTTAACC
73368638 AAATAAAATAAAAATAA
1 AAATAAAATAAAAA-AA
*
73368655 AAATAAAATAAAAAAT
1 AAATAAAATAAAAAAA
73368671 AAATAAAA
1 AAATAAAA
73368679 CTAATACTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (16 bp):
AAATAAAATAAAAAAA
Found at i:73376177 original size:93 final size:93
Alignment explanation
Indices: 73376064--73376235 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73376054 TGCCCATAAG
*
73376064 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73376129 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
73376157 CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73376222 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73376236 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73376230 original size:46 final size:46
Alignment explanation
Indices: 73376057--73376232 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
73376047 TGTAACCTGC
* * *
73376057 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73376103 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
73376153 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73376196 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73376233 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73383817 original size:21 final size:20
Alignment explanation
Indices: 73383771--73383821 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
73383761 GTTGCATACG
*
73383771 GGCGTGTGGGTAAGTGACAT
1 GGCGTGTGGGTAAGTGACAA
73383791 GAGCGTGTGGGTAAGTGACACA
1 G-GCGTGTGGGTAAGTGACA-A
73383813 GGCGTGTGG
1 GGCGTGTGG
73383822 AAACTAGAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.20, C:0.12, G:0.47, T:0.22
Consensus pattern (20 bp):
GGCGTGTGGGTAAGTGACAA
Found at i:73386856 original size:27 final size:27
Alignment explanation
Indices: 73386826--73387003 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73386816 ATATTGAGTC
* * * *
73386826 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73386853 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73386880 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73386908 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73386935 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73386962 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73386989 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73387004 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73386965 original size:82 final size:81
Alignment explanation
Indices: 73386847--73387002 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73386837 TGCTATATAA
* *
73386847 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73386912 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73386929 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73386993 CACTTAGTGC
65 CACTTAGTGC
73387003 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73394882 original size:27 final size:27
Alignment explanation
Indices: 73394852--73395029 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73394842 ATATTGAGTC
* * * *
73394852 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73394879 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73394906 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73394934 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73394961 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73394988 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73395015 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73395030 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73394991 original size:82 final size:81
Alignment explanation
Indices: 73394873--73395028 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73394863 TGCTATATAA
* *
73394873 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73394938 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73394955 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73395019 CACTTAGTGC
65 CACTTAGTGC
73395029 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73399183 original size:18 final size:18
Alignment explanation
Indices: 73399160--73399200 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
73399150 TATGATTCAG
73399160 TTTTATATGAATGTTTAT
1 TTTTATATGAATGTTTAT
73399178 TTTTATATGAATGTTTAT
1 TTTTATATGAATGTTTAT
*
73399196 GTTTA
1 TTTTA
73399201 AGTCTGGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (18 bp):
TTTTATATGAATGTTTAT
Found at i:73401690 original size:17 final size:16
Alignment explanation
Indices: 73401668--73401723 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
73401658 TGAAAAATTG
73401668 ATTTTTTTTATATTTTT
1 ATTTTTTTTA-ATTTTT
*
73401685 A-TTTTTTGAATTTTT
1 ATTTTTTTTAATTTTT
**
73401700 ATTTTTCATAATTTTTT
1 ATTTTTTTTAA-TTTTT
73401717 ATTTTTT
1 ATTTTTT
73401724 AAAAATTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 7 0.22
16 13 0.41
17 12 0.38
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (16 bp):
ATTTTTTTTAATTTTT
Found at i:73401691 original size:15 final size:15
Alignment explanation
Indices: 73401671--73401724 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
73401661 AAAATTGATT
73401671 TTTTTTATATTTTTA
1 TTTTTTATATTTTTA
73401686 TTTTTTGA-ATTTTTA
1 TTTTTT-ATATTTTTA
*
73401701 TTTTTCATAATTTTTTA
1 TTTTTTAT-A-TTTTTA
73401718 TTTTTTA
1 TTTTTTA
73401725 AAAATTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 1 0.03
15 18 0.55
16 2 0.06
17 12 0.36
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTTTTATATTTTTA
Found at i:73414259 original size:21 final size:21
Alignment explanation
Indices: 73414230--73414269 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73414220 TGCTGGACAG
*
73414230 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
73414251 GAGCTGGAATGAGAGTGTT
1 GAGCCGGAATGAGAGTGTT
73414270 CGGTTGCTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.42, T:0.25
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:73428454 original size:17 final size:17
Alignment explanation
Indices: 73428432--73428466 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
73428422 CCTATTATTG
*
73428432 TAATAAAAAATTTGATA
1 TAATAAAAAATTTAATA
*
73428449 TAATAATAAATTTAATA
1 TAATAAAAAATTTAATA
73428466 T
1 T
73428467 TGAAAATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
TAATAAAAAATTTAATA
Found at i:73432907 original size:41 final size:41
Alignment explanation
Indices: 73432700--73432896 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
73432690 TTTATCGTTA
* * * *
73432700 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
73432741 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
73432782 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
73432823 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
73432864 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
73432897 AAGAGCCGGT
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 143 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:73433133 original size:33 final size:33
Alignment explanation
Indices: 73433077--73433174 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
73433067 ATATATATAT
*
73433077 ATATATATATATGT-TGCATTCGGCATAGGTGA
1 ATATATATATGTGTATGCATTCGGCATAGGTGA
*
73433109 ATATATTTATGTGTATGCATTCGGCATAGGTGA
1 ATATATATATGTGTATGCATTCGGCATAGGTGA
* * *
73433142 AAATAAGTGTATGTATCTATGCATTCGGCATAG
1 ATAT-A-TATATG--TGTATGCATTCGGCATAG
73433175 ATGGGTATAG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 21 0.38
34 1 0.02
35 5 0.09
37 17 0.30
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (33 bp):
ATATATATATGTGTATGCATTCGGCATAGGTGA
Found at i:73439931 original size:27 final size:27
Alignment explanation
Indices: 73439899--73439964 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
73439889 TAGTTGAACT
73439899 ATGGCAAAGTGATAAAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
73439926 ATGGCAAAGTGATAAAGTGTGCCAAAT
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
73439953 ATGGCAAAGTGA
1 ATGGCAAAGTGA
73439965 AATGTGACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Done.