Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 231 of 318
Found at i:73444770 original size:24 final size:23
Alignment explanation
Indices: 73444733--73444778 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
73444723 ATAAATGGTA
73444733 TTTTAGTAATAATATAAGTATATT
1 TTTTAGTAATAATA-AAGTATATT
*
73444757 TTTTA-TAATAAATAAATTATAT
1 TTTTAGTAAT-AATAAAGTATAT
73444779 AAAGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
TTTTAGTAATAATAAAGTATATT
Found at i:73447708 original size:3 final size:3
Alignment explanation
Indices: 73447700--73447741 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
73447690 AGTAATATAG
73447700 TAA TAA TAA TAA TAA TAA TAA T-A TCAA TAA -AA -AA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TA
73447742 GAGATATTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.17
3 28 0.78
4 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:73448086 original size:20 final size:20
Alignment explanation
Indices: 73448058--73448205 Score: 55
Period size: 20 Copynumber: 7.6 Consensus size: 20
73448048 AATATAGTGT
*
73448058 TAAAGATATATACATAATAA
1 TAAAAATATATACATAATAA
*
73448078 T-AAAA-ATATA-ATATTAA
1 TAAAAATATATACATAATAA
* *
73448095 -AAGATATATATACGTAATATA
1 TAA-AAATATATACATAATA-A
* *
73448116 TAAAAAATGTATACATGATAA
1 T-AAAAATATATACATAATAA
** ** *
73448137 TATGAA-ACGTACGTACATAA
1 TAAAAATATATACATA-ATAA
73448157 T----ATATATACATAATACA
1 TAAAAATATATACATAATA-A
*
73448174 T-TAAATATATACATAATATA
1 TAAAAATATATACATAATA-A
*
73448194 TAAATATATATA
1 TAAAAATATATA
73448206 ATATTTAAAA
Statistics
Matches: 92, Mismatches: 22, Indels: 27
0.65 0.16 0.19
Matches are distributed among these distances:
16 4 0.04
17 15 0.16
18 7 0.08
19 12 0.13
20 29 0.32
21 11 0.12
22 12 0.13
23 2 0.02
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.33
Consensus pattern (20 bp):
TAAAAATATATACATAATAA
Found at i:73448206 original size:17 final size:17
Alignment explanation
Indices: 73448160--73448214 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
73448150 TACATAATAT
* *
73448160 ATATACATAATACATTAA
1 ATATATATAATATA-TAA
73448178 ATATATACATAATATATAA
1 ATATAT--ATAATATATAA
*
73448197 ATATATATAATATTTAA
1 ATATATATAATATATAA
73448214 A
1 A
73448215 AAATATGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 11 0.34
18 5 0.16
19 9 0.28
20 7 0.22
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATATATAATATATAA
Found at i:73449005 original size:13 final size:13
Alignment explanation
Indices: 73448989--73449013 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73448979 AGGTATTAAT
73448989 TTTTTGTATATTC
1 TTTTTGTATATTC
73449002 TTTTTGTATATT
1 TTTTTGTATATT
73449014 TTATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.72
Consensus pattern (13 bp):
TTTTTGTATATTC
Found at i:73449044 original size:23 final size:23
Alignment explanation
Indices: 73449002--73449046 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
73448992 TTGTATATTC
73449002 TTTTTGTATATTTTATATATATA
1 TTTTTGTATATTTTATATATATA
73449025 TTTTTGATATATTTTA-ATATAT
1 TTTTTG-TATATTTTATATATAT
73449047 CAATGAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (23 bp):
TTTTTGTATATTTTATATATATA
Found at i:73450113 original size:43 final size:43
Alignment explanation
Indices: 73450047--73450160 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
73450037 CACTTCTGAT
* *
73450047 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTACTTAGGGGGTTAAGATCTATAAATTCAGC
* * * * *
73450090 CTGTTACCCTACTTCTTAAGGGGTTAAGGTCTGTAAATTCGGC
1 CTGTTACCCTACTACTTAGGGGGTTAAGATCTATAAATTCAGC
* *
73450133 TTGCTACCCTACTACTTAGGGGGTTAAG
1 CTGTTACCCTACTACTTAGGGGGTTAAG
73450161 GGTTAAGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTACTTAGGGGGTTAAGATCTATAAATTCAGC
Found at i:73451080 original size:39 final size:39
Alignment explanation
Indices: 73451026--73451103 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
73451016 GTGTTTAGGG
73451026 GATCCAGAGTACTTTGTCGATGCCCCAAGACGTAGCATA
1 GATCCAGAGTACTTTGTCGATGCCCCAAGACGTAGCATA
73451065 GATCCAGAGTACTTTGTCGATGCCCCAAGACGTAGCATA
1 GATCCAGAGTACTTTGTCGATGCCCCAAGACGTAGCATA
73451104 CTTCTTCATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
GATCCAGAGTACTTTGTCGATGCCCCAAGACGTAGCATA
Found at i:73463293 original size:3 final size:3
Alignment explanation
Indices: 73463285--73463319 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
73463275 AGTAATACAG
73463285 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73463320 GTGATATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73463808 original size:41 final size:42
Alignment explanation
Indices: 73463736--73463829 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 42
73463726 CGTACATAAT
* *
73463736 ATATATACATAATACATTAAATATATACATAATATG-TAAAA
1 ATATATATATAATACATTAAAAATATACATAATATGATAAAA
* * **
73463777 ATATATATATAATA-TTTAAAAAATATGCATAATATGATATTA
1 ATATATATATAATACATT-AAAAATATACATAATATGATAAAA
73463819 ATATATATATA
1 ATATATATATA
73463830 TGTAATATGG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.04
41 29 0.64
42 14 0.31
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.38
Consensus pattern (42 bp):
ATATATATATAATACATTAAAAATATACATAATATGATAAAA
Found at i:73464592 original size:13 final size:13
Alignment explanation
Indices: 73464571--73464600 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
73464561 CGAAAGGTAT
*
73464571 TATTTTTTTTGTA
1 TATTCTTTTTGTA
73464584 TATTCTTTTTGTA
1 TATTCTTTTTGTA
73464597 TATT
1 TATT
73464601 TTATATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.73
Consensus pattern (13 bp):
TATTCTTTTTGTA
Found at i:73464607 original size:22 final size:23
Alignment explanation
Indices: 73464590--73464632 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
73464580 TGTATATTCT
73464590 TTTTG-TATATTTTATATATATA
1 TTTTGATATATTTTATATATATA
73464612 TTTTGATATATTTTA-ATATAT
1 TTTTGATATATTTTATATATAT
73464633 GAATGAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (23 bp):
TTTTGATATATTTTATATATATA
Found at i:73464609 original size:24 final size:23
Alignment explanation
Indices: 73464590--73464632 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
73464580 TGTATATTCT
73464590 TTTTG-TATATTTT-ATATATATA
1 TTTTGATATATTTTAATATAT-TA
73464612 TTTTGATATATTTTAATATAT
1 TTTTGATATATTTTAATATAT
73464633 GAATGAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (23 bp):
TTTTGATATATTTTAATATATTA
Found at i:73467584 original size:9 final size:9
Alignment explanation
Indices: 73467566--73467639 Score: 51
Period size: 10 Copynumber: 7.7 Consensus size: 9
73467556 AGTGATTTCT
73467566 TAAAAATTA
1 TAAAAATTA
*
73467575 TAAAATTTA
1 TAAAAATTA
73467584 TTTAAAAATTA
1 --TAAAAATTA
73467595 TAAAAAATTA
1 T-AAAAATTA
*
73467605 TAAATGATTA
1 TAAA-AATTA
**
73467615 TTAATTATT-
1 -TAAAAATTA
73467624 TAAAAATTAA
1 TAAAAATT-A
73467634 TAAAAA
1 TAAAAA
73467640 ATATTATTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.12
9 12 0.24
10 22 0.43
11 11 0.22
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (9 bp):
TAAAAATTA
Found at i:73467937 original size:11 final size:10
Alignment explanation
Indices: 73467845--73467937 Score: 52
Period size: 11 Copynumber: 9.4 Consensus size: 10
73467835 ATATGTGTAT
73467845 ATAATTTTT-
1 ATAATTTTTA
*
73467854 ATAAATTTTA
1 ATAATTTTTA
73467864 ATAA--TTTA
1 ATAATTTTTA
* *
73467872 A-ATTTTATTT
1 ATAATTT-TTA
* *
73467882 AGAATTCTTA
1 ATAATTTTTA
*
73467892 ATCAATTTTAA
1 AT-AATTTTTA
*
73467903 ATAATTTTTTT
1 ATAA-TTTTTA
73467914 ATAATTTTT-
1 ATAATTTTTA
73467923 ATAATTATTTA
1 ATAATT-TTTA
73467934 ATAA
1 ATAA
73467938 ATCAATCTTG
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
7 1 0.02
8 5 0.08
9 15 0.23
10 20 0.31
11 23 0.36
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:73467937 original size:20 final size:21
Alignment explanation
Indices: 73467889--73467937 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
73467879 TTTAGAATTC
*
73467889 TTAATCAATTTTAAATAATTTT
1 TTAAT-AATTTTAAATAATTAT
* *
73467911 TTTATAATTTT-TATAATTAT
1 TTAATAATTTTAAATAATTAT
73467931 TTAATAA
1 TTAATAA
73467938 ATCAATCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 13 0.57
21 6 0.26
22 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATAATTTTAAATAATTAT
Found at i:73468040 original size:11 final size:10
Alignment explanation
Indices: 73468016--73468061 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
73468006 TCAATGTTAT
73468016 TTTTAATAAA
1 TTTTAATAAA
*
73468026 TTTAAATAAA
1 TTTTAATAAA
73468036 TTTT-ATAAA
1 TTTTAATAAA
*
73468045 TTCTTAATAAT
1 TT-TTAATAAA
73468056 TTTTAA
1 TTTTAA
73468062 ATAATTTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
9 7 0.23
10 18 0.58
11 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:73468045 original size:19 final size:19
Alignment explanation
Indices: 73468016--73468063 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
73468006 TCAATGTTAT
73468016 TTTTAATAAATT-TAAATAAA
1 TTTT-ATAAATTCTAAAT-AA
*
73468036 TTTTATAAATTCTTAATAA
1 TTTTATAAATTCTAAATAA
73468055 TTTT-TAAAT
1 TTTTATAAAT
73468064 AATTTTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 13 0.50
20 8 0.31
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTTATAAATTCTAAATAA
Found at i:73470418 original size:19 final size:19
Alignment explanation
Indices: 73470394--73470436 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
73470384 AATTATTTAT
73470394 TAAATT-TAATTAGAATATG
1 TAAATTCTAATTA-AATATG
* *
73470413 TAAATTCTATTTAAATATT
1 TAAATTCTAATTAAATATG
73470432 TAAAT
1 TAAAT
73470437 ATAACAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
TAAATTCTAATTAAATATG
Found at i:73470432 original size:41 final size:41
Alignment explanation
Indices: 73470374--73470516 Score: 125
Period size: 41 Copynumber: 3.5 Consensus size: 41
73470364 ATTTCTAAGT
*
73470374 AATTA-ATATTAATTATTTATTAAATTTAATTAGAATATGTA
1 AATTATAT-TTAAATATTTATTAAATTTAATTAGAATATGTA
* **
73470415 AATTCTATTTAAATATTTA--AATATAACAATTA-AATATTTGT-
1 AATTATATTTAAATATTTATTAA-AT-TTAATTAGAATA--TGTA
* * *
73470456 AATTAGATATTGAATATTTATTAAATTTAATTAGAATATATA
1 AATTATAT-TTAAATATTTATTAAATTTAATTAGAATATGTA
*
73470498 AACTATATTTAAATATTTA
1 AATTATATTTAAATATTTA
73470517 AATATAATAA
Statistics
Matches: 79, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
39 2 0.03
40 6 0.08
41 37 0.47
42 26 0.33
43 6 0.08
44 2 0.03
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (41 bp):
AATTATATTTAAATATTTATTAAATTTAATTAGAATATGTA
Found at i:73470475 original size:83 final size:82
Alignment explanation
Indices: 73470372--73470549 Score: 286
Period size: 83 Copynumber: 2.1 Consensus size: 82
73470362 ACATTTCTAA
* * *
73470372 GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATGTAAATTCTATTTAAATATTTAAAT
1 GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
73470437 ATAACAATTAAATATTT
66 ATAACAATTAAATATTT
73470454 GTAATTAGATATTGAA-TATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAA
1 GTAATTA-ATATT-AATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAA
*
73470518 ATATAATAATTAAATATTT
64 ATATAACAATTAAATATTT
73470537 GTAATTAAATATT
1 GTAATT-AATATT
73470550 TGGAAGAAGA
Statistics
Matches: 89, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
82 7 0.08
83 79 0.89
84 3 0.03
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (82 bp):
GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
ATAACAATTAAATATTT
Found at i:73470532 original size:21 final size:21
Alignment explanation
Indices: 73470423--73470536 Score: 80
Period size: 21 Copynumber: 5.5 Consensus size: 21
73470413 TAAATTCTAT
*
73470423 TTAAATATTTAAATATAACAA
1 TTAAATATTTAAATATAATAA
*
73470444 TTAAATATTTGTAAT-TAGAT-A
1 TTAAATATTT-AAATATA-ATAA
* *
73470465 TTGAATATTTATTAA-AT-TTAA
1 TTAAATATTTA--AATATAATAA
*
73470486 TTAGAATATATAAACTAT-AT--
1 TTA-AATATTTAAA-TATAATAA
73470506 TTAAATATTTAAATATAATAA
1 TTAAATATTTAAATATAATAA
73470527 TTAAATATTT
1 TTAAATATTT
73470537 GTAATTAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 24
0.69 0.09 0.23
Matches are distributed among these distances:
18 3 0.04
19 11 0.15
20 6 0.08
21 35 0.49
22 17 0.24
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (21 bp):
TTAAATATTTAAATATAATAA
Found at i:73470543 original size:14 final size:14
Alignment explanation
Indices: 73470524--73470551 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73470514 TTAAATATAA
73470524 TAATTAAATATTTG
1 TAATTAAATATTTG
73470538 TAATTAAATATTTG
1 TAATTAAATATTTG
73470552 GAAGAAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TAATTAAATATTTG
Found at i:73471266 original size:23 final size:23
Alignment explanation
Indices: 73471220--73471275 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 23
73471210 AAAGGGTTTG
73471220 ATTTTATTATTTGATAGGTTTAAT
1 ATTTTATTATTTGATA-GTTTAAT
73471244 -TTTTATTATTTGATA-TTAATAAT
1 ATTTTATTATTTGATAGTT--TAAT
73471267 ATTTT-TTAT
1 ATTTTATTAT
73471276 AAATTGAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
21 2 0.07
23 23 0.79
24 4 0.14
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (23 bp):
ATTTTATTATTTGATAGTTTAAT
Found at i:73472559 original size:43 final size:43
Alignment explanation
Indices: 73472498--73472584 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
73472488 GTTCCGAGCT
73472498 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
1 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
73472541 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
1 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
73472584 A
1 A
73472585 CTCTTTGTGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (43 bp):
AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
Found at i:73482313 original size:16 final size:15
Alignment explanation
Indices: 73482288--73482317 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
73482278 AAAATAATTC
73482288 TTCATGAATAAAATG
1 TTCATGAATAAAATG
73482303 TTCATTGAATAAAAT
1 TTCA-TGAATAAAAT
73482318 ATTTATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (15 bp):
TTCATGAATAAAATG
Found at i:73483289 original size:20 final size:18
Alignment explanation
Indices: 73483239--73483290 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 18
73483229 CAATGAATAA
73483239 GTTCACCAATAGATACAATT
1 GTTCA-CAA-AGATACAATT
73483259 GTTCA-AAAGATACAATT
1 GTTCACAAAGATACAATT
73483276 GTTCATCAAGAGATA
1 GTTCA-CAA-AGATA
73483291 GAACATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 15 0.52
18 2 0.07
19 2 0.07
20 10 0.34
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (18 bp):
GTTCACAAAGATACAATT
Found at i:73490910 original size:20 final size:21
Alignment explanation
Indices: 73490858--73490910 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
73490848 AATTAAAAAT
73490858 AATAAAATTTAATTAGTTATAA
1 AATAAAA-TTAATTAGTTATAA
* ** *
73490880 AATTATTTTAATTA-TTATTA
1 AATAAAATTAATTAGTTATAA
73490900 AATAAAATTAA
1 AATAAAATTAA
73490911 AAATCATATC
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
20 13 0.54
21 7 0.29
22 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
AATAAAATTAATTAGTTATAA
Found at i:73491278 original size:8 final size:8
Alignment explanation
Indices: 73491265--73491368 Score: 57
Period size: 8 Copynumber: 11.9 Consensus size: 8
73491255 ATATTTTCTC
73491265 ATAAAAAT
1 ATAAAAAT
73491273 ATAAAAAAAT
1 AT--AAAAAT
73491283 CATAAAAA-
1 -ATAAAAAT
*
73491291 ATTAAAAT
1 ATAAAAAT
73491299 ATTAAAATTGAT
1 A-TAAAA---AT
**
73491311 ATAAACTT
1 ATAAAAAT
*
73491319 ATAAATATT
1 ATAAA-AAT
73491328 ATAAAAAT
1 ATAAAAAT
*
73491336 ATGAAAAT
1 ATAAAAAT
*
73491344 CTAATAAATT
1 ATAA-AAA-T
73491354 ATAAAAAT
1 ATAAAAAT
73491362 ATAAAAA
1 ATAAAAA
73491369 ATTAATAAGT
Statistics
Matches: 75, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
7 6 0.08
8 28 0.37
9 22 0.29
10 10 0.13
11 6 0.08
12 3 0.04
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
ATAAAAAT
Found at i:73491305 original size:26 final size:26
Alignment explanation
Indices: 73491268--73491373 Score: 87
Period size: 26 Copynumber: 4.1 Consensus size: 26
73491258 TTTTCTCATA
*
73491268 AAAATA-TAAAAAAATCATAAAAAATT
1 AAAATATTATAAAAAT-ATAAAAAATT
* * *
73491294 AAAATA-T-TAAAATTGATATAAACTT
1 AAAATATTATAAAAAT-ATAAAAAATT
*
73491319 ATAAATATTATAAAAATAT-GAAAATCT
1 A-AAATATTATAAAAATATAAAAAAT-T
73491346 AATAA-ATTATAAAAATATAAAAAATT
1 AA-AATATTATAAAAATATAAAAAATT
73491372 AA
1 AA
73491374 TAAGTCTTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
25 14 0.22
26 33 0.51
27 12 0.18
28 6 0.09
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAATATTATAAAAATATAAAAAATT
Found at i:73491770 original size:17 final size:17
Alignment explanation
Indices: 73491748--73491781 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73491738 GTTCAATTAA
* *
73491748 ATAAAATATTAAAAAAT
1 ATAAAACATAAAAAAAT
73491765 ATAAAACATAAAAAAAT
1 ATAAAACATAAAAAAAT
73491782 GTATTAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAAAACATAAAAAAAT
Found at i:73496719 original size:17 final size:17
Alignment explanation
Indices: 73496684--73496731 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
73496674 ATTGAGAAAT
73496684 AAAAAGAAATCAA-AAAAG
1 AAAAAGAAA--AAGAAAAG
**
73496702 AAATTGAAAAAGAAAAG
1 AAAAAGAAAAAGAAAAG
73496719 AAAAAGAAAAAGA
1 AAAAAGAAAAAGA
73496732 GAAACAAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 2 0.08
17 16 0.64
18 7 0.28
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAG
Found at i:73496729 original size:30 final size:30
Alignment explanation
Indices: 73496667--73496731 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
73496657 AACGAATTTT
*
73496667 AAAAGAAATTGAGAAATAAAAAGAAATCAA
1 AAAAGAAATTGAGAAATAAAAAGAAAACAA
73496697 AAAAGAAATTGA-AAA-AGAAAAGAAAA-AGA
1 AAAAGAAATTGAGAAATA-AAAAGAAAACA-A
73496726 AAAAGA
1 AAAAGA
73496732 GAAACAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 2 0.06
29 18 0.56
30 12 0.38
ACGTcount: A:0.74, C:0.02, G:0.15, T:0.09
Consensus pattern (30 bp):
AAAAGAAATTGAGAAATAAAAAGAAAACAA
Found at i:73501538 original size:8 final size:8
Alignment explanation
Indices: 73501486--73501579 Score: 55
Period size: 8 Copynumber: 10.5 Consensus size: 8
73501476 AAAATTTTAA
73501486 ATATATTTT
1 ATAT-TTTT
*
73501495 ATTAATTTT
1 A-TATTTTT
73501504 ATATTTTTT
1 ATA-TTTTT
73501513 ATAATTTATT
1 AT-ATTT-TT
*
73501523 AGATTTTT
1 ATATTTTT
73501531 ATATTTTT
1 ATATTTTT
73501539 ATAATATTTAGT
1 AT-AT-TTT--T
73501551 AATATTTTT
1 -ATATTTTT
73501560 AT-TTATTT
1 ATATT-TTT
*
73501568 ATAATTTT
1 ATATTTTT
73501576 ATAT
1 ATAT
73501580 CAATTTTCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 23
0.70 0.06 0.24
Matches are distributed among these distances:
7 2 0.03
8 26 0.38
9 23 0.34
10 9 0.13
11 3 0.04
12 3 0.04
13 2 0.03
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (8 bp):
ATATTTTT
Found at i:73502549 original size:18 final size:18
Alignment explanation
Indices: 73502528--73502563 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73502518 AAATAAAATA
*
73502528 TTAAAAATTATAAACTTT
1 TTAAAAATTAAAAACTTT
73502546 TTAAAAATTAAAAACTTT
1 TTAAAAATTAAAAACTTT
73502564 CGTTTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
TTAAAAATTAAAAACTTT
Found at i:73502878 original size:37 final size:37
Alignment explanation
Indices: 73502836--73502910 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
73502826 GAGATAAGTA
73502836 TATTTTACATAAAATCTCAAGAAAATAGTCTTTTACG
1 TATTTTACATAAAATCTCAAGAAAATAGTCTTTTACG
* *
73502873 TATTTTACATCAAATCTCAAGATAATAGTCTTTTACG
1 TATTTTACATAAAATCTCAAGAAAATAGTCTTTTACG
73502910 T
1 T
73502911 TTGTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (37 bp):
TATTTTACATAAAATCTCAAGAAAATAGTCTTTTACG
Found at i:73504160 original size:3 final size:3
Alignment explanation
Indices: 73504152--73504192 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
73504142 GTTTGTTTTC
73504152 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
73504193 AATTTCATCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:73504910 original size:13 final size:13
Alignment explanation
Indices: 73504889--73504935 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
73504879 AGGCAAAAAA
73504889 AAATTTAAAATTT
1 AAATTTAAAATTT
*
73504902 -AATTTTAAATTT
1 AAATTTAAAATTT
*
73504914 AAATTTACAATTT
1 AAATTTAAAATTT
73504927 AAACTTTAA
1 AAA-TTTAA
73504936 TTTTTTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
12 11 0.39
13 13 0.46
14 4 0.14
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (13 bp):
AAATTTAAAATTT
Found at i:73504914 original size:6 final size:6
Alignment explanation
Indices: 73504889--73504935 Score: 58
Period size: 6 Copynumber: 7.3 Consensus size: 6
73504879 AGGCAAAAAA
*
73504889 AAATTT AAAATTT AATTTT AAATTT AAATTT ACAATTT AAACTTT AA
1 AAATTT -AAATTT AAATTT AAATTT AAATTT A-AATTT AAA-TTT AA
73504936 TTTTTTATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 19 0.53
7 17 0.47
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (6 bp):
AAATTT
Found at i:73509822 original size:40 final size:41
Alignment explanation
Indices: 73509738--73509922 Score: 229
Period size: 40 Copynumber: 4.6 Consensus size: 41
73509728 TCGAATGATG
* * *
73509738 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* *
73509778 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
73509818 TCCGGGCTAAG-CCCGAAGGAATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
73509857 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
73509897 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73509923 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 36 0.29
40 81 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:73509944 original size:79 final size:78
Alignment explanation
Indices: 73509775--73509945 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 78
73509765 CTAAGTGACC
* *
73509775 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGAAT
1 ATATCCGG-TTAAGACCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGAAT
**
73509840 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* * * *
73509854 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATCC-GGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGA
*
73509918 ATTTGAACGAG-TAGCT
63 ATTGGAACGAGTTA-CT
73509934 ATATCCGGTTAA
1 ATATCCGGTTAA
73509946 ATTCTGAAGG
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 51 0.65
80 25 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGAATT
GGAACGAGTTACT
Found at i:73518884 original size:96 final size:94
Alignment explanation
Indices: 73518817--73519323 Score: 631
Period size: 96 Copynumber: 5.3 Consensus size: 94
73518807 GATAATTGTG
* *
73518817 ATGTGAATGTACATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
73518882 GTGATAAGG-CTGAATGGCCAATGTGATGA
66 GTGATAAGGAGT-AATGGCCAATGTGATGA
73518911 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
73518976 ATGTGATAAGGCCTAATGGAATGGCCGATGTGATGA
64 ATGTGATAAGG----A-GTAATGGCCAATGTGATGA
* * * *
73519012 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
** *
73519077 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGAGTAATGGCCAATGTGATGA
73519108 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
** * *
73519173 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGAGTAATGGCCAATGTGATGA
* * *
73519204 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
73519269 GTGACAGGGCCG-AGTGGCCAACGTGATGG
66 GTGATAAGG-AGTAATGGCCAATGTGATGA
* * *
73519298 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAATGTATATATATGTGATAAG
73519324 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 30, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
94 103 0.28
95 5 0.01
96 127 0.34
97 2 0.01
98 47 0.13
99 47 0.13
100 2 0.01
101 37 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGAGTAATGGCCAATGTGATGA
Found at i:73518947 original size:49 final size:47
Alignment explanation
Indices: 73518829--73519323 Score: 749
Period size: 47 Copynumber: 10.3 Consensus size: 47
73518819 GTGAATGTAC
*
73518829 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
73518876 ATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG--T
73518925 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
73518972 ATATATGTGATAAGGCCTAATGGAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCC---T--AATGGCCGATGTGATGAATGTGAAAGTGT
* *
73519024 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
73519073 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
73519122 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
73519169 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
73519216 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
73519263 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
73519310 ATAAATGTGATAAG
1 ATATATGTGATAAG
73519324 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 19, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
46 2 0.00
47 230 0.55
49 137 0.33
50 3 0.01
52 46 0.11
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:73523352 original size:12 final size:12
Alignment explanation
Indices: 73523335--73523361 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73523325 ATTCCGAAGT
73523335 ATATATATATAC
1 ATATATATATAC
73523347 ATATATATATAC
1 ATATATATATAC
73523359 ATA
1 ATA
73523362 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:73523878 original size:27 final size:27
Alignment explanation
Indices: 73523847--73524024 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73523837 TAAATTGTAC
73523847 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73523874 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73523900 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73523928 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73523956 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73523983 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73524010 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73524025 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73523961 original size:82 final size:81
Alignment explanation
Indices: 73523848--73524003 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73523838 AAATTGTACA
* *
73523848 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73523912 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73523929 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73523994 TGCGAGTTGA
65 TGCGAATTGA
73524004 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73524015 original size:82 final size:81
Alignment explanation
Indices: 73523844--73524024 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73523834 GATTAAATTG
* *
73523844 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73523909 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73523925 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73523989 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73524007 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73524025 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73531472 original size:12 final size:12
Alignment explanation
Indices: 73531455--73531481 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73531445 ATTCCGAAGT
73531455 ATATATATATAC
1 ATATATATATAC
73531467 ATATATATATAC
1 ATATATATATAC
73531479 ATA
1 ATA
73531482 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:73531996 original size:27 final size:27
Alignment explanation
Indices: 73531965--73532142 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73531955 TAAATTGTAC
73531965 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73531992 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73532018 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73532046 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73532074 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73532101 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73532128 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73532143 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73532079 original size:82 final size:81
Alignment explanation
Indices: 73531966--73532121 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73531956 AAATTGTACA
* *
73531966 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73532030 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73532047 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73532112 TGCGAGTTGA
65 TGCGAATTGA
73532122 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73532133 original size:82 final size:81
Alignment explanation
Indices: 73531962--73532142 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73531952 GATTAAATTG
* *
73531962 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73532027 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73532043 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73532107 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73532125 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73532143 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73533815 original size:40 final size:40
Alignment explanation
Indices: 73533725--73533909 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
73533715 TCGAATGATG
* * * *
73533725 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
73533766 T-CGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
73533805 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTTCTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
73533844 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
73533883 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
73533910 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.32
40 76 0.62
41 8 0.07
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:73533931 original size:79 final size:79
Alignment explanation
Indices: 73533772--73533942 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
73533762 ATATTCGGAC
* * **
73533772 TAAGACCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
**
73533837 TTCTAAATCCGGGT
66 AGCTAAATCCGGGT
* *
73533851 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGA
*
73533915 GTAGCTATATCC-GGT
64 GTAGCTAAATCCGGGT
* *
73533930 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
73533943 TACGTGATTC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 2 0.03
79 52 0.66
80 25 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGT
AGCTAAATCCGGGT
Found at i:73537538 original size:102 final size:102
Alignment explanation
Indices: 73537362--73537562 Score: 402
Period size: 102 Copynumber: 2.0 Consensus size: 102
73537352 GGTTTTTTCC
73537362 AAAAATCTTTCAGATTTGGTCAGAACAAATTTGGAAAATTCTGGTTAGAGATTGAGGAATGGGGT
1 AAAAATCTTTCAGATTTGGTCAGAACAAATTTGGAAAATTCTGGTTAGAGATTGAGGAATGGGGT
73537427 GTAGTGATCTACTCTTTTTGGTTTACTAGTATGAAAA
66 GTAGTGATCTACTCTTTTTGGTTTACTAGTATGAAAA
73537464 AAAAATCTTTCAGATTTGGTCAGAACAAATTTGGAAAATTCTGGTTAGAGATTGAGGAATGGGGT
1 AAAAATCTTTCAGATTTGGTCAGAACAAATTTGGAAAATTCTGGTTAGAGATTGAGGAATGGGGT
73537529 GTAGTGATCTACTCTTTTTGGTTTACTAGTATGA
66 GTAGTGATCTACTCTTTTTGGTTTACTAGTATGA
73537563 CGCATATAAT
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (102 bp):
AAAAATCTTTCAGATTTGGTCAGAACAAATTTGGAAAATTCTGGTTAGAGATTGAGGAATGGGGT
GTAGTGATCTACTCTTTTTGGTTTACTAGTATGAAAA
Found at i:73537815 original size:17 final size:18
Alignment explanation
Indices: 73537781--73537815 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
73537771 TTTAGATTTT
73537781 TTTTTTCAAATATCATTAC
1 TTTTTTCAAATA-CATTAC
73537800 TTTTTTCAAATA-ATTA
1 TTTTTTCAAATACATTA
73537816 ATTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
19 12 0.75
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTTTCAAATACATTAC
Found at i:73538433 original size:16 final size:17
Alignment explanation
Indices: 73538401--73538433 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
73538391 ATAATTTTTT
*
73538401 ATTTTTTTAATAGTTAA
1 ATTTTTTAAATAGTTAA
73538418 ATTTTTTAAATA-TTAA
1 ATTTTTTAAATAGTTAA
73538434 TATAAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
ATTTTTTAAATAGTTAA
Found at i:73538441 original size:22 final size:23
Alignment explanation
Indices: 73538407--73538454 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
73538397 TTTTATTTTT
*
73538407 TTAATAGTTAAATT-TTTTAAATA
1 TTAATAGTAAAATTATTTTAAA-A
73538430 TTAATA-TAAAATTATTTTAAAA
1 TTAATAGTAAAATTATTTTAAAA
73538452 TTA
1 TTA
73538455 TAATTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TTAATAGTAAAATTATTTTAAAA
Found at i:73541271 original size:31 final size:31
Alignment explanation
Indices: 73541235--73541313 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
73541225 TTTAACGGTT
73541235 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
*
73541266 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
* *
73541297 ATTAGGCTGAAGCCTTT
1 ACTGGGCTGAAGCCTTT
73541314 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (31 bp):
ACTGGGCTGAAGCCTTTTCATAAATCATATC
Found at i:73541576 original size:26 final size:26
Alignment explanation
Indices: 73541519--73541687 Score: 191
Period size: 26 Copynumber: 6.3 Consensus size: 26
73541509 CTGGAGGCCT
*
73541519 AGCCTCTTTT-AAT-AACTAGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
73541543 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
73541569 AGCCCTTTTCGGTAAACTGGGGCATAA
1 AGCCCTTTTCAATAAACTGGGGCAT-A
*
73541596 GCTTATGCCCTTTTCAATAAACTAGGGCATA
1 ----A-GCCCTTTTCAATAAACTGGGGCATA
***
73541627 AGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
73541653 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
73541679 AGCCCTTTT
1 AGCCCTTTT
73541688 GCATTTCCTC
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
23 5 0.04
24 7 0.06
25 9 0.07
26 77 0.63
27 2 0.02
31 2 0.02
32 21 0.17
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:73541634 original size:58 final size:52
Alignment explanation
Indices: 73541532--73541687 Score: 224
Period size: 58 Copynumber: 2.9 Consensus size: 52
73541522 CTCTTTTAAT
*
73541532 AACTAGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
* *
73541583 AACTGGGGCATAAGCTTATGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCAT-A----A-GCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
73541641 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
73541688 GCATTTCCTC
Statistics
Matches: 94, Mismatches: 4, Indels: 13
0.85 0.04 0.12
Matches are distributed among these distances:
51 9 0.10
52 33 0.35
53 2 0.02
57 2 0.02
58 48 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:73541635 original size:84 final size:81
Alignment explanation
Indices: 73541524--73541681 Score: 244
Period size: 84 Copynumber: 1.9 Consensus size: 81
73541514 GGCCTAGCCT
**
73541524 CTTTTAATAACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGG
1 CTTTTAATAACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGG
73541589 GGCATAAGCTTATGCC
66 GGCATAAGCTTATGCC
***
73541605 CTTTTCAATAAACTAGGGCATAAGCCCTTTTTGGTAAACTGGGGCATAAGCCCTTTTCAATAAAC
1 CTTTT-AAT-AACTAGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAAC
73541670 TGGGGCATAAGC
63 TGGGGCATAAGC
73541682 CCTTTTGCAT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
81 5 0.07
82 3 0.04
83 10 0.14
84 51 0.74
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (81 bp):
CTTTTAATAACTAGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGG
GGCATAAGCTTATGCC
Found at i:73541742 original size:16 final size:16
Alignment explanation
Indices: 73541721--73541751 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73541711 ACCCAACCCA
*
73541721 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
73541737 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
73541752 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:73542521 original size:27 final size:26
Alignment explanation
Indices: 73542486--73542579 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
73542476 GGGCATATTC
*
73542486 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
73542513 GTCACTTTACTCTACAGGGGCTTTACG
1 GTCACTTTAC-CTACAGGGGCTTTACG
* *
73542540 GTCTCTTTACCCTACAGGAGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
73542567 GTCTTTTTACCTA
1 GTCACTTTACCTA
73542580 ATAGGGGTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
26 4 0.07
27 53 0.88
28 3 0.05
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:73542661 original size:27 final size:27
Alignment explanation
Indices: 73542635--73543086 Score: 202
Period size: 27 Copynumber: 16.7 Consensus size: 27
73542625 ATCTACAAAC
* * *
73542635 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73542662 CAATGGTATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
73542691 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
73542718 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** * * *
73542745 TGAGGGTATTTCAGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
73542771 CCAGTGGTATTTTGGTAATGTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTATAAAT
* * *
73542798 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
** * *
73542826 TGAGGGTATTTCTA-TAATTTTACAAAC
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
73542853 CAATGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
73542879 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAT
* * *
73542906 CGAGGGTATTTTGGT-ATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
73542932 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* ***
73542959 CGAGGGTAAAATAGTAATTCTT-TAAAT
1 CAAGGGTATTTTAGTAATT-TTATAAAT
**** *
73542986 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* ***** *
73543013 CGAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * * *
73543040 CGAGGGTACTTTGGTAATTTTACAATT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** *
73543067 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTTAGTAATTT
73543087 GGTAAACTAA
Statistics
Matches: 342, Mismatches: 67, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.00
26 46 0.13
27 262 0.77
28 19 0.06
29 14 0.04
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:73542814 original size:81 final size:81
Alignment explanation
Indices: 73542719--73542900 Score: 287
Period size: 81 Copynumber: 2.3 Consensus size: 81
73542709 TTTGTAAATC
*
73542719 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTC-AGTAATTTCACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCTA-TAATTTCACAAACCAATGGTATTT
* *
73542783 TGGTAATGTTACAAACT
65 TAGCAATGTTACAAACT
* *
73542800 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTATAATTTTACAAACCAATGGTATTTT
1 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCTATAATTTCACAAACCAATGGTATTTT
*
73542865 AGCAATTTTACAAACT
66 AGCAATGTTACAAACT
73542881 A-GGGTATTTTGGTAATTTTA
1 AGGGGTATTTTGGTAATTTTA
73542901 CTGATCGAGG
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
80 19 0.20
81 74 0.79
82 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCTATAATTTCACAAACCAATGGTATTTT
AGCAATGTTACAAACT
Found at i:73543084 original size:54 final size:54
Alignment explanation
Indices: 73542610--73543086 Score: 268
Period size: 54 Copynumber: 8.8 Consensus size: 54
73542600 TCATCCTATA
* * * * * * * *
73542610 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCG
* *** * * * * *
73542664 ATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATC-
1 AGGGTATTTTGGTAA-TTTTACAAA-TCGAGGGTATTTCAGTAATTTTATAAATCG
* * * * *
73542719 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCAGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCG
* * ** * *
73542773 AGTGGTATTTTGGTAATGTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTTATAAATCG
* * * * * * * *
73542828 AGGGTATTTCT-ATAATTTTACAAACCAATGGTATTTTAGCAATTTTACAAA-CT
1 AGGGTATTT-TGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCG
** ** *
73542881 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGT-ATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCG
* ** ** *
73542934 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT-AGTAATTCTT-TAAATCA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGT-ATTTCAGTAATT-TTATAAATCG
***** * * *** * *
73542988 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCG
* * *
73543042 AGGGTACTTTGGTAATTTTACAATTTGAGGGTATTTCAGTAATTT
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
73543087 GGTAAACTAA
Statistics
Matches: 322, Mismatches: 85, Indels: 32
0.73 0.19 0.07
Matches are distributed among these distances:
52 9 0.03
53 67 0.21
54 189 0.59
55 22 0.07
56 35 0.11
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAATCG
Found at i:73558132 original size:40 final size:40
Alignment explanation
Indices: 73558042--73558302 Score: 359
Period size: 40 Copynumber: 6.6 Consensus size: 40
73558032 AAACCAAGTA
** * *
73558042 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
73558081 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
73558121 CCCTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73558161 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
73558201 CCTTCGGGACTTAGCCTGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
73558241 CCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
73558280 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
73558303 CATCCGAATA
Statistics
Matches: 198, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.23
40 150 0.76
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:73566231 original size:40 final size:40
Alignment explanation
Indices: 73566150--73566410 Score: 359
Period size: 40 Copynumber: 6.6 Consensus size: 40
73566140 AAACCAAGTA
** * *
73566150 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
73566189 CCTTCGGAACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
73566229 CCTTCTGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73566269 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73566309 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
73566349 CCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
73566388 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
73566411 CATCCGAATA
Statistics
Matches: 198, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.23
40 150 0.76
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:73572180 original size:29 final size:29
Alignment explanation
Indices: 73572147--73572215 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
73572137 AGCATGAATG
73572147 TGAATGTGATTTGGGCCTAATGAGCCATA
1 TGAATGTGATTTGGGCCTAATGAGCCATA
* *
73572176 TGAATGTGATTTGGGCCTAATGGGCTATA
1 TGAATGTGATTTGGGCCTAATGAGCCATA
*
73572205 TGAATGAGATT
1 TGAATGTGATT
73572216 GGATGTGATC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.28, C:0.10, G:0.29, T:0.33
Consensus pattern (29 bp):
TGAATGTGATTTGGGCCTAATGAGCCATA
Found at i:73572223 original size:39 final size:39
Alignment explanation
Indices: 73572179--73572256 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
73572169 AGCCATATGA
*
73572179 ATGTGATTTGGGCCTAATGGGCTATATGAATGAGATTGG
1 ATGTGATCTGGGCCTAATGGGCTATATGAATGAGATTGG
73572218 ATGTGATCTGGGCCTAATGGGCTATATGAATGAGATTGG
1 ATGTGATCTGGGCCTAATGGGCTATATGAATGAGATTGG
73572257 GCCTAGTGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.26, C:0.09, G:0.33, T:0.32
Consensus pattern (39 bp):
ATGTGATCTGGGCCTAATGGGCTATATGAATGAGATTGG
Found at i:73579920 original size:14 final size:14
Alignment explanation
Indices: 73579875--73579934 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 14
73579865 AACAAAATTG
73579875 AAATGAAAATAAAAA
1 AAAT-AAAATAAAAA
* *
73579890 TCAAA-AGAATAAGAA
1 --AAATAAAATAAAAA
73579905 AAATAAAATAAAAA
1 AAATAAAATAAAAA
73579919 AAACT-AAATAAAAA
1 AAA-TAAAATAAAAA
73579933 AA
1 AA
73579935 CAGGAGGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
13 3 0.08
14 22 0.59
15 9 0.24
17 3 0.08
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.13
Consensus pattern (14 bp):
AAATAAAATAAAAA
Found at i:73595992 original size:8 final size:7
Alignment explanation
Indices: 73595964--73596015 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
73595954 GGTTTTCTCC
73595964 AAAATG-
1 AAAATGA
73595970 AAAAT-A
1 AAAATGA
73595976 AAAATGA
1 AAAATGA
*
73595983 AAAATGG
1 AAAATGA
73595990 AAAAT-A
1 AAAATGA
73595996 AAAATG-
1 AAAATGA
*
73596002 -ATATGA
1 AAAATGA
73596008 AAAATGA
1 AAAATGA
73596015 A
1 A
73596016 TATATTCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
5 4 0.11
6 15 0.41
7 18 0.49
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.17
Consensus pattern (7 bp):
AAAATGA
Found at i:73595994 original size:20 final size:19
Alignment explanation
Indices: 73595964--73596002 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
73595954 GGTTTTCTCC
73595964 AAAATGAAAATAAAAATGA
1 AAAATGAAAATAAAAATGA
73595983 AAAATGGAAAATAAAAATGA
1 AAAAT-GAAAATAAAAATGA
73596003 TATGAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (19 bp):
AAAATGAAAATAAAAATGA
Found at i:73597598 original size:93 final size:93
Alignment explanation
Indices: 73597490--73597660 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73597480 GCCCCTAAGT
* * * *
73597490 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73597555 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
73597583 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73597648 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73597661 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73597657 original size:46 final size:46
Alignment explanation
Indices: 73597485--73597657 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
73597475 AACCTGCCCC
* * * * *
73597485 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
73597531 TAAGTGAACTCGGACTCAACTCGACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
73597579 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
73597624 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73597658 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:73605100 original size:46 final size:45
Alignment explanation
Indices: 73605033--73605203 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
73605023 AACCCGCCCC
*
73605033 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* * * *
73605079 TAAGTGAACTCAGACTCAACTCGACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * *
73605127 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
73605171 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
73605204 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
42 5 0.05
44 3 0.03
45 28 0.27
46 30 0.29
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:73605198 original size:92 final size:93
Alignment explanation
Indices: 73605038--73605207 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
73605028 GCCCCTAAGT
* * *
73605038 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
73605103 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
73605131 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
73605195 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73605208 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 42 0.58
93 30 0.42
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73605666 original size:30 final size:29
Alignment explanation
Indices: 73605630--73605688 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
73605620 CATTTAATTC
73605630 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTT-GAAAAATTACACTTTTGCCCCTA
* *
73605660 AACTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGAAAAATTACACTTTTGCCCCTA
73605689 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (29 bp):
AACTTTGAAAAATTACACTTTTGCCCCTA
Found at i:73629680 original size:43 final size:43
Alignment explanation
Indices: 73629560--73629683 Score: 117
Period size: 43 Copynumber: 2.9 Consensus size: 43
73629550 AGCTCGTATA
* * *
73629560 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGAAATGGTCTTACATGTAATCACATATCG
* * * *** *
73629602 ATGCCACTGTCCTAGAAAGGGTCTTACACAAAATCATATAAT-G
1 ATGCCAATGTCCCAGAAATGGTCTTACATGTAATCACAT-ATCG
* *
73629645 ATGCCAATGTCCCAGACATGGTCTTAAATGTAATCACAT
1 ATGCCAATGTCCCAGAAATGGTCTTACATGTAATCACAT
73629684 CCCGGTAATC
Statistics
Matches: 61, Mismatches: 19, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
42 5 0.08
43 54 0.89
44 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGAAATGGTCTTACATGTAATCACATATCG
Found at i:73637539 original size:29 final size:29
Alignment explanation
Indices: 73637473--73637579 Score: 110
Period size: 29 Copynumber: 3.7 Consensus size: 29
73637463 TACATATATG
**
73637473 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCACATT
* * * *
73637501 CAAATGGCCCATCT-GGCCTAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCACATT
*
73637530 CTTATGGCCCACTAGGCCCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCACATT
* *
73637559 CATATGGCCTATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
73637580 ATCATATTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
28 17 0.27
29 47 0.73
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCACATT
Found at i:73637801 original size:16 final size:16
Alignment explanation
Indices: 73637782--73637816 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
73637772 ATTTTCGTTA
73637782 TTTCAGCATTTCGACT
1 TTTCAGCATTTCGACT
*
73637798 TTTCGGCATTTCGACT
1 TTTCAGCATTTCGACT
73637814 TTT
1 TTT
73637817 GTCGATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTCAGCATTTCGACT
Found at i:73642259 original size:79 final size:83
Alignment explanation
Indices: 73642117--73642305 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 83
73642107 GGTTATTCGA
* *
73642117 ATAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAA
1 ATAAT-TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAA
73642181 GGCATTTGTGCGAGTTA-T
65 GGCATTTGTGCGAGTTACT
* * * **
73642199 -TAATTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 ATAATTCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAA
73642260 GGCATTTGTGCGAGTTACT
65 GGCATTTGTGCGAGTTACT
*
73642279 ATAA--CCGGGCTATGTCCCGAAGGCATT
1 ATAATTCCGGGCTAAGTCCCGAAGGCATT
73642306 TGAACGAGTA
Statistics
Matches: 94, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
78 1 0.01
79 56 0.60
80 30 0.32
81 7 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (83 bp):
ATAATTCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
GCATTTGTGCGAGTTACT
Found at i:73642321 original size:40 final size:41
Alignment explanation
Indices: 73642123--73642307 Score: 224
Period size: 40 Copynumber: 4.6 Consensus size: 41
73642113 TCGAATAATG
* * *
73642123 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
73642163 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-T-TAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73642202 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73642242 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73642283 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73642308 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
38 1 0.01
39 32 0.25
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73650470 original size:40 final size:40
Alignment explanation
Indices: 73650318--73650463 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
73650308 TCGAATGATG
* * * * *
73650318 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73650358 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73650398 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73650439 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73650464 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.89
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73650470 original size:80 final size:80
Alignment explanation
Indices: 73650318--73650486 Score: 175
Period size: 80 Copynumber: 2.1 Consensus size: 80
73650308 TCGAATGATG
* * *
73650318 TCCGGGCTAAGTCCTGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTG
**
73650383 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
73650398 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* *
73650461 TTGAACGAGTAGCTATA
64 TGGAACGAGTAGCTAAA
73650478 TCC-GGTTAA
1 TCCGGGTTAA
73650487 ATTCCGATGG
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
79 9 0.12
80 58 0.78
81 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTG
GAACGAGTAGCTAAA
Found at i:73668477 original size:12 final size:12
Alignment explanation
Indices: 73668460--73668492 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
73668450 CCGTGTGTGA
73668460 CACACGGTCTAG
1 CACACGGTCTAG
73668472 CACACGGTCTAG
1 CACACGGTCTAG
73668484 CACACGGTC
1 CACACGGTC
73668493 AGTTTCACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.15
Consensus pattern (12 bp):
CACACGGTCTAG
Found at i:73669175 original size:56 final size:56
Alignment explanation
Indices: 73669089--73669208 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
73669079 ACAAGGGATG
73669089 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
73669145 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
73669201 ATGGGCAA
1 ATGGGCAA
73669209 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:73670566 original size:79 final size:78
Alignment explanation
Indices: 73670343--73670592 Score: 258
Period size: 79 Copynumber: 3.2 Consensus size: 78
73670333 ATGTCCTGGC
* * * * * *
73670343 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
73670406 AGATACTAATTCCGGGC
64 AG-TACTAA-TCCGGGT
* * *
73670423 TAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGAGTTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
73670486 GTTACTAATCCGGGT
65 G-TACTAATCCGGGT
* **
73670501 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
73670566 TAGCTATATCC-GGT
66 TA-CTA-ATCCGGGT
* *
73670580 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
73670593 TACGTGATTT
Statistics
Matches: 144, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
78 14 0.10
79 114 0.79
80 16 0.11
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAATCCGGGT
Found at i:73670573 original size:40 final size:40
Alignment explanation
Indices: 73670340--73670578 Score: 265
Period size: 40 Copynumber: 6.0 Consensus size: 40
73670330 ATGATGTCCT
* * *
73670340 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCG
* * *
73670380 GACTAAGAT-CCGAAGGCATTTGTGCCAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
* *
73670420 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
73670459 AGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
73670498 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* **
73670538 GGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
73670578 G
1 G
73670579 TTAAATTCCG
Statistics
Matches: 172, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
39 72 0.42
40 92 0.53
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:73673677 original size:20 final size:21
Alignment explanation
Indices: 73673648--73673699 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
73673638 AAAATCCATG
* *
73673648 TATATATATTATATATT-ATA
1 TATATTTATTATACATTAATA
73673668 TATATTTATTA-ACATTAATA
1 TATATTTATTATACATTAATA
*
73673688 TAAATTT-TTATA
1 TATATTTATTATA
73673700 ATAATAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TATATTTATTATACATTAATA
Found at i:73673787 original size:11 final size:10
Alignment explanation
Indices: 73673760--73673790 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
73673750 ATGAAAAATT
73673760 AAGAAAGAAA
1 AAGAAAGAAA
73673770 AAGAAAGAAA
1 AAGAAAGAAA
73673780 AAGCAAAGAAA
1 AAG-AAAGAAA
73673791 GGGAGAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.65
11 7 0.35
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:73674529 original size:25 final size:25
Alignment explanation
Indices: 73674481--73674529 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
73674471 CATAATTGAA
* * *
73674481 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
73674506 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
73674530 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:73679348 original size:27 final size:27
Alignment explanation
Indices: 73679308--73679384 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
73679298 TGTGGTAGAT
*
73679308 ACAGATAATCGTGGCAGAGCCACCAGA
1 ACAGATAATTGTGGCAGAGCCACCAGA
*
73679335 ACAGA-AATATGTGGCAGTGCCACCAGA
1 ACAGATAAT-TGTGGCAGAGCCACCAGA
* *
73679362 TCAGATAATTGTGGCATAGCCAC
1 ACAGATAATTGTGGCAGAGCCAC
73679385 TAGGACGCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 3 0.07
27 37 0.86
28 3 0.07
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ACAGATAATTGTGGCAGAGCCACCAGA
Found at i:73680174 original size:19 final size:19
Alignment explanation
Indices: 73680138--73680176 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
73680128 TTTTCATCAT
* *
73680138 AGTAAAATAAAATAATAAA
1 AGTAAAAGAAAACAATAAA
*
73680157 AGTAAAAGAAAACCATAAA
1 AGTAAAAGAAAACAATAAA
73680176 A
1 A
73680177 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (19 bp):
AGTAAAAGAAAACAATAAA
Found at i:73680693 original size:27 final size:27
Alignment explanation
Indices: 73680641--73680730 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
73680631 GTGACAGAGT
73680641 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
73680670 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
73680697 CACCAGAACATATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
73680725 CACCAG
1 CACCAG
73680731 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:73680726 original size:28 final size:27
Alignment explanation
Indices: 73680641--73680730 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
73680631 GTGACAGAGT
*
73680641 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
73680670 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
73680697 CACCAGAACATATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
73680725 CACCAG
1 CACCAG
73680731 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:73680882 original size:28 final size:28
Alignment explanation
Indices: 73680835--73680899 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
73680825 AAATTAACCC
*
73680835 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
73680863 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
73680891 TAGGGGTAT
1 TAGGGGTAT
73680900 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:73689484 original size:28 final size:27
Alignment explanation
Indices: 73689429--73689540 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
73689419 AACATGGCTC
* * *
73689429 CCAGAACAGATAA-CGTGACAAAGTCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
73689455 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGGCAGAGCCA
* *
73689483 CCAGAACAGA-AATATGTGGTAGAGCCA
1 CCAGAACAGATAAT-CGTGGCAGAGCCA
* * *
73689510 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
73689537 CCAG
1 CCAG
73689541 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGGCAGAGCCA
Found at i:73703574 original size:46 final size:46
Alignment explanation
Indices: 73703509--73703828 Score: 478
Period size: 46 Copynumber: 7.0 Consensus size: 46
73703499 TTATCTTTGA
* * * * * *
73703509 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTCTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
73703555 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
73703601 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
73703647 CATGTTGCCTTGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
73703693 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** *
73703739 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * **
73703785 CATGTTGCCATGGTATCTTCCAACCACGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
73703829 TTCAGAAAGC
Statistics
Matches: 255, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 255 1.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:73709031 original size:46 final size:46
Alignment explanation
Indices: 73708890--73709032 Score: 198
Period size: 46 Copynumber: 3.1 Consensus size: 46
73708880 TGTCATAGTG
* * *
73708890 TCTTTCAACTATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTA
1 TCTTTCAACAATGGTCTTATTCATTTCCAGTCATGTTGCCATGGTA
* * * * *
73708936 TCTGTCAACCATGGTCTTGTTCATTT-TATGTCACGTTGCCATGGTA
1 TCTTTCAACAATGGTCTTATTCATTTCCA-GTCATGTTGCCATGGTA
73708982 TCTTTCAACAATGGTCTTATTCATTTCCAGTCATGTTGCCATGGTA
1 TCTTTCAACAATGGTCTTATTCATTTCCAGTCATGTTGCCATGGTA
73709028 TCTTT
1 TCTTT
73709033 TGTAATATCC
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
46 82 0.99
47 1 0.01
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (46 bp):
TCTTTCAACAATGGTCTTATTCATTTCCAGTCATGTTGCCATGGTA
Found at i:73709696 original size:46 final size:46
Alignment explanation
Indices: 73709649--73709821 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
73709639 TTGAGCATCT
* *
73709649 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*
73709695 GAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCC
* * * *
73709742 GAGCTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*
73709788 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73709822 GAGGGTTACA
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
45 1 0.01
46 61 0.57
47 27 0.25
48 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:73709802 original size:93 final size:93
Alignment explanation
Indices: 73709643--73709814 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
73709633 GGATGGTTGA
* ** * * *
73709643 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73709708 TGAGTCCGAGTTCAAGAGATGTAACTAG
66 TGAGTCCGAGTTCAAGAGATGTAACTAG
* *
73709736 GCATCCGAGCTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73709801 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
73709815 CTTATGGGAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCAAGAGATGTAACTAG
Found at i:73712766 original size:15 final size:15
Alignment explanation
Indices: 73712736--73712814 Score: 86
Period size: 15 Copynumber: 5.3 Consensus size: 15
73712726 GCATAGTATC
* *
73712736 TTATCTTGGGTTTCT
1 TTATCCTGGATTTCT
*
73712751 TTATCCTGGATCTCT
1 TTATCCTGGATTTCT
*
73712766 TTATTCTGGATTTCT
1 TTATCCTGGATTTCT
* *
73712781 TTATTCTGGGTTTCT
1 TTATCCTGGATTTCT
* *
73712796 CTATCTTGGATTTCT
1 TTATCCTGGATTTCT
73712811 TTAT
1 TTAT
73712815 TCGGTTTTCT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 53 1.00
ACGTcount: A:0.11, C:0.16, G:0.15, T:0.57
Consensus pattern (15 bp):
TTATCCTGGATTTCT
Found at i:73712815 original size:30 final size:30
Alignment explanation
Indices: 73712737--73712824 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
73712727 CATAGTATCT
* * * *
73712737 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
73712767 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
73712797 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
73712825 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:73714585 original size:46 final size:45
Alignment explanation
Indices: 73714532--73714707 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
73714522 TGGTTGAGCA
73714532 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
73714578 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
73714625 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
73714671 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73714708 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73714688 original size:93 final size:93
Alignment explanation
Indices: 73714529--73714699 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73714519 GGATGGTTGA
* * *
73714529 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73714594 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
73714622 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
73714687 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
73714700 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:73716093 original size:46 final size:46
Alignment explanation
Indices: 73716008--73716175 Score: 237
Period size: 46 Copynumber: 3.7 Consensus size: 46
73715998 GGGGTGTTAC
*** ** *
73716008 ATCTTTCAACCATGGTCTTGTTCATTTCATGTCACGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATAACATGTTGCCATGGT
* *
73716054 ATCTTTTAACCATGGTCTTACACATGTCATAACATGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATAACATGTTGCCATGGT
* * *
73716100 ATCTTTCAACCATGGTCTTACACCTTTCATATCATGTTGTCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTCATAACATGTTGCCATGGT
73716146 ATCTTTCAACCATGGTCTTACACATTTCAT
1 ATCTTTCAACCATGGTCTTACACATTTCAT
73716176 TTCAGAAAGC
Statistics
Matches: 108, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 108 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
ATCTTTCAACCATGGTCTTACACATTTCATAACATGTTGCCATGGT
Found at i:73716126 original size:21 final size:21
Alignment explanation
Indices: 73716102--73716174 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
73716092 GCCATGGTAT
73716102 CTTTCAACCATGGTCTTACAC
1 CTTTCAACCATGGTCTTACAC
* *** *
73716123 CTTTCATATCATGTTGTCATGGTAT
1 CTTTCA-ACCATG--GTC-TTACAC
73716148 CTTTCAACCATGGTCTTACAC
1 CTTTCAACCATGGTCTTACAC
*
73716169 ATTTCA
1 CTTTCA
73716175 TTTCAGAAAG
Statistics
Matches: 37, Mismatches: 11, Indels: 8
0.66 0.20 0.14
Matches are distributed among these distances:
21 13 0.35
22 8 0.22
24 8 0.22
25 8 0.22
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.40
Consensus pattern (21 bp):
CTTTCAACCATGGTCTTACAC
Found at i:73721987 original size:31 final size:31
Alignment explanation
Indices: 73721949--73722013 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
73721939 CCTTTTCATA
73721949 TTTCATATTTCATGA-CACTGGGCCGAAGCCT
1 TTTCATATTTCAT-ATCACTGGGCCGAAGCCT
*
73721980 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATCACTGGGCCGAAGCCT
73722011 TTT
1 TTT
73722014 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATCACTGGGCCGAAGCCT
Found at i:73722258 original size:24 final size:24
Alignment explanation
Indices: 73722205--73722322 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
73722195 GCTTTATCGT
*
73722205 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
73722230 GTAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73722254 ATAACTGGTGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73722277 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73722300 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73722323 GCACTTCCTC
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
23 45 0.54
24 28 0.33
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73722397 original size:20 final size:20
Alignment explanation
Indices: 73722372--73722438 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
73722362 TTATGAATAC
73722372 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73722392 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73722412 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73722432 ACCATGT
1 ATCATGT
73722439 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73722403 original size:11 final size:11
Alignment explanation
Indices: 73722372--73722427 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73722362 TTATGAATAC
73722372 ATCATGTGCAT
1 ATCATGTGCAT
*
73722383 ATCA--TACAT
1 ATCATGTGCAT
73722392 ATCATGTGCAT
1 ATCATGTGCAT
*
73722403 ATCA--TACAT
1 ATCATGTGCAT
*
73722412 GTCATGTGCAT
1 ATCATGTGCAT
73722423 ATCAT
1 ATCAT
73722428 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73729195 original size:40 final size:40
Alignment explanation
Indices: 73729125--73729382 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
73729115 AAGCCAGGTA
* * * *
73729125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73729164 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73729204 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73729244 CCTTCGAGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73729284 CCTTCGGGACTTAACCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73729324 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73729364 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73729383 TTATCATCCG
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.07
40 185 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73736344 original size:40 final size:40
Alignment explanation
Indices: 73736274--73736531 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
73736264 GAGCCAGGTA
* * * *
73736274 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73736313 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73736353 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73736393 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73736433 CCTTCGGGACTTAACCCGGATATAGTAACTTGCACAAATC
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73736473 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73736513 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73736532 TTATCATCCG
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.07
40 185 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73738500 original size:37 final size:37
Alignment explanation
Indices: 73738441--73738542 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
73738431 AGCTCAGACG
* *
73738441 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
73738478 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73738515 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
73738543 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73738739 original size:47 final size:47
Alignment explanation
Indices: 73738661--73738916 Score: 422
Period size: 47 Copynumber: 5.4 Consensus size: 47
73738651 CCCTTCGGGA
* * * * * *
73738661 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73738708 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73738755 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73738802 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73738851 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73738898 CTTATCACATATATACACT
1 CTTATCACATATATACACT
73738917 GTCTTGGCTG
Statistics
Matches: 197, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 150 0.76
49 47 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73738858 original size:96 final size:96
Alignment explanation
Indices: 73738661--73738912 Score: 418
Period size: 96 Copynumber: 2.6 Consensus size: 96
73738651 CCCTTCGGGA
* * * * * * * *
73738661 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
73738724 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73738755 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
73738820 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73738851 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
73738913 CACTGTCTTG
Statistics
Matches: 148, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 47 0.32
96 101 0.68
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73744354 original size:31 final size:31
Alignment explanation
Indices: 73744316--73744379 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
73744306 CCTTTTCATA
73744316 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
73744347 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
73744378 TT
1 TT
73744380 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:73744646 original size:23 final size:24
Alignment explanation
Indices: 73744571--73744736 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
73744561 GCTTTATCGT
*
73744571 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
73744596 GTAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73744620 ATAACTGGTGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73744643 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73744667 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73744690 ATAACTCGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73744714 ATAACTGGGGTATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73744737 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
23 44 0.35
24 72 0.57
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73744654 original size:47 final size:47
Alignment explanation
Indices: 73744592--73744735 Score: 234
Period size: 47 Copynumber: 3.1 Consensus size: 47
73744582 CCTAGCCTCT
* * *
73744592 TTTAGTAACTAGGGCAAAAGCCCTTTTAATAACTGGTGCATAAGCCC
1 TTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
73744639 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
73744686 TTTAATAACTCGGGCATAAGCCCTTTTAATAACTGGGGTATAAGCCC
1 TTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
73744733 TTT
1 TTT
73744736 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (47 bp):
TTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Done.