Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 233 of 318
Found at i:74097785 original size:16 final size:16
Alignment explanation
Indices: 74097760--74097803 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
74097750 ACAATTAAAT
74097760 TATT-TATTACATA-TC
1 TATTCTATTACA-AGTC
74097775 TATTCTATTACAAGTC
1 TATTCTATTACAAGTC
*
74097791 TATTCCATTACAA
1 TATTCTATTACAA
74097804 CTATATTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.45
Consensus pattern (16 bp):
TATTCTATTACAAGTC
Found at i:74102583 original size:17 final size:17
Alignment explanation
Indices: 74102547--74102582 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
74102537 AATATTAAAA
*
74102547 TTTAATTATTTTTCATT
1 TTTAATTATTTATCATT
74102564 TTTAA-TATTTATCATT
1 TTTAATTATTTATCATT
74102580 TTT
1 TTT
74102583 TGCCACATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTAATTATTTATCATT
Found at i:74102673 original size:20 final size:20
Alignment explanation
Indices: 74102644--74102681 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74102634 TTTAAAAATA
*
74102644 GTTAACTTTAATGATCAACC
1 GTTAAATTTAATGATCAACC
*
74102664 GTTAAATTTAATGGTCAA
1 GTTAAATTTAATGATCAA
74102682 AAAGCCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (20 bp):
GTTAAATTTAATGATCAACC
Found at i:74112125 original size:39 final size:39
Alignment explanation
Indices: 74112071--74112342 Score: 463
Period size: 39 Copynumber: 7.0 Consensus size: 39
74112061 ATTATATTAT
* * *
74112071 CAGCACAAAGCCTGCGGGACTTTAACCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
74112110 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
74112149 CAGCATGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
74112188 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
74112227 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
74112266 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
74112305 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74112343 TCAGTGTCTT
Statistics
Matches: 220, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 220 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:74118009 original size:39 final size:39
Alignment explanation
Indices: 74117949--74118219 Score: 425
Period size: 39 Copynumber: 6.9 Consensus size: 39
74117939 ATTATATTAT
* * * *
74117949 AGCACAAAGCCTGTGGGACTTTAACACGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
* * *
74117988 AGCAGGAAGCCTGCGGGACTTTGGCCCGGATACATTTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
* * *
74118027 AGCATGAAGCCTGCGAGACTTTAGTCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
* *
74118066 AGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
*
74118105 AGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
74118144 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
74118183 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74118220 TCAGTGTCTT
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 213 1.00
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
Found at i:74135782 original size:19 final size:18
Alignment explanation
Indices: 74135754--74135792 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
74135744 TGAAATAACT
**
74135754 AAAAATAAATTTAAATAA
1 AAAAATAAATAAAAATAA
74135772 AAAAATGAAATAAAAATAA
1 AAAAAT-AAATAAAAATAA
74135791 AA
1 AA
74135793 TGAATTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (18 bp):
AAAAATAAATAAAAATAA
Found at i:74138095 original size:40 final size:40
Alignment explanation
Indices: 74137878--74138093 Score: 328
Period size: 40 Copynumber: 5.4 Consensus size: 40
74137868 AAACCAAGTA
* *
74137878 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
74137917 CCTTAGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74137957 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74137997 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74138037 CCTTCGGGACTTAGCCCAGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74138077 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
74138094 AGTTATCGTC
Statistics
Matches: 161, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74142577 original size:24 final size:24
Alignment explanation
Indices: 74142533--74142578 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
74142523 AGCTGATCGC
*
74142533 TTGGGTTTTCGATCATCTCTTCGG
1 TTGGGGTTTCGATCATCTCTTCGG
*
74142557 TTGGGGTTT-GATTATCGTCTTC
1 TTGGGGTTTCGATCATC-TCTTC
74142579 CCACTCGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (24 bp):
TTGGGGTTTCGATCATCTCTTCGG
Found at i:74147217 original size:18 final size:18
Alignment explanation
Indices: 74147194--74147258 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 18
74147184 TTTTTGGAAA
74147194 TAAATACCAATTTTAAAG
1 TAAATACCAATTTTAAAG
*
74147212 TAAATACTGATATTTTTGGAAA-
1 TAAATAC-CA-A-TTTT--AAAG
*
74147234 TAAATACCGATTTTAAAG
1 TAAATACCAATTTTAAAG
74147252 TAAATAC
1 TAAATAC
74147259 TTTTTGGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
17 3 0.08
18 14 0.37
19 5 0.13
20 2 0.05
21 4 0.11
22 7 0.18
23 3 0.08
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.35
Consensus pattern (18 bp):
TAAATACCAATTTTAAAG
Found at i:74147234 original size:40 final size:40
Alignment explanation
Indices: 74147179--74147259 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
74147169 TGCTATAAAA
74147179 TGATATTTTTGGAAATAAATACCAATTTTAAAGTAAATAC
1 TGATATTTTTGGAAATAAATACCAATTTTAAAGTAAATAC
*
74147219 TGATATTTTTGGAAATAAATACCGATTTTAAAGTAAATAC
1 TGATATTTTTGGAAATAAATACCAATTTTAAAGTAAATAC
74147259 T
1 T
74147260 TTTTGGATAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.38
Consensus pattern (40 bp):
TGATATTTTTGGAAATAAATACCAATTTTAAAGTAAATAC
Found at i:74147237 original size:22 final size:22
Alignment explanation
Indices: 74147179--74147240 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 22
74147169 TGCTATAAAA
74147179 TGATATTTTTGGAAATAAATAC
1 TGATATTTTTGGAAATAAATAC
*
74147201 -CA-A-TTTT--AAAGTAAATAC
1 TGATATTTTTGGAAA-TAAATAC
74147219 TGATATTTTTGGAAATAAATAC
1 TGATATTTTTGGAAATAAATAC
74147241 CGATTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
17 3 0.09
18 7 0.22
19 5 0.16
20 2 0.06
21 5 0.16
22 7 0.22
23 3 0.09
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (22 bp):
TGATATTTTTGGAAATAAATAC
Found at i:74156342 original size:47 final size:47
Alignment explanation
Indices: 74156288--74156819 Score: 812
Period size: 47 Copynumber: 11.2 Consensus size: 47
74156278 AATTCTAAAT
* * *
74156288 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAGGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74156335 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74156382 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
74156431 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74156478 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74156525 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74156574 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
74156621 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74156670 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74156717 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
74156764 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74156811 TGTGATAAG
1 TGTGATAAG
74156820 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 32, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
47 313 0.70
49 134 0.30
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74156469 original size:96 final size:94
Alignment explanation
Indices: 74156288--74156819 Score: 821
Period size: 96 Copynumber: 5.6 Consensus size: 94
74156278 AATTCTAAAT
* * *
74156288 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAGGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74156353 CCGATGTGATGAATGTGAAAGTGTATATG
66 CCGATGTGATGAATGTGAAAGTGTATATA
* *
74156382 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
74156447 GGCCGATGTGATGAATGTGAAAGTGTATATA
64 GGCCGATGTGATGAATGTGAAAGTGTATATA
74156478 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74156543 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* * *
74156574 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74156639 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
** *
74156670 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74156735 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
74156764 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74156820 TCCCGAAGGG
Statistics
Matches: 408, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 134 0.33
96 274 0.67
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74156546 original size:143 final size:143
Alignment explanation
Indices: 74156288--74156819 Score: 852
Period size: 143 Copynumber: 3.7 Consensus size: 143
74156278 AATTCTAAAT
* * *
74156288 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAGGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
**
74156353 CCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
74156418 AAGTGTATATATA
131 AAGTGTATATATA
*
74156431 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74156496 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
74156561 AAGTGTATATATA
131 AAGTGTATATATA
* * *
74156574 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74156639 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
66 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
*
74156704 GAAAGTG--TATATG
129 GAAAGTGTATATATA
* * * * *
74156717 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
74156782 CCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74156820 TCCCGAAGGG
Statistics
Matches: 362, Mismatches: 25, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 13 0.04
143 303 0.84
145 46 0.13
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (143 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATA
Found at i:74158890 original size:43 final size:43
Alignment explanation
Indices: 74158842--74159070 Score: 422
Period size: 43 Copynumber: 5.3 Consensus size: 43
74158832 TTGGTTTTCA
*
74158842 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
74158885 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
74158928 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
74158971 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* *
74159014 GCACTAAGTGTGCGGGCAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
74159057 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74159071 TGTAACACCC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 181 1.00
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:74161423 original size:40 final size:40
Alignment explanation
Indices: 74161368--74161485 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
74161358 AAGCACTATG
*
74161368 TGTGCGAATTGATATATCCGGGATAAGACCTGAAGGCATT
1 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
*
74161408 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
* * * *
74161448 CGTGCGAGTTGCTATA-CTCGGGTTAAGACCCGAAGGCA
1 TGTGCGAATTGATATATC-CGGGATAAGACCCGAAGGCA
74161486 ATTGAGCTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
Found at i:74161615 original size:40 final size:40
Alignment explanation
Indices: 74161420--74161618 Score: 156
Period size: 40 Copynumber: 5.0 Consensus size: 40
74161410 TGCGAATTGA
** *
74161420 TATATCCGGGCTAAGACCCGAAG-GCATTCGTGC-GAGTTGC
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTG-G-TGT
* ** * *
74161460 TATA-CTCGGGTTAAGACCCGAAG-GCAATT-GAGCTTGTGGT
1 TATATC-CGGGCTAAGTTCCGAAGAGC-ATTCGTGCTGGT-GT
* * *
74161500 TATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
** *
74161540 GGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
* * * *
74161580 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTG
74161619 ACATGTATTC
Statistics
Matches: 128, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 114 0.89
41 12 0.09
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
Found at i:74165204 original size:47 final size:47
Alignment explanation
Indices: 74165150--74165681 Score: 821
Period size: 47 Copynumber: 11.2 Consensus size: 47
74165140 AATTCTAAAT
* *
74165150 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74165197 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74165244 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
74165293 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74165340 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74165387 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74165436 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
74165483 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74165532 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74165579 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
74165626 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74165673 TGTGATAAG
1 TGTGATAAG
74165682 TCCCGAAGGG
Statistics
Matches: 448, Mismatches: 31, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
47 314 0.70
49 134 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74165332 original size:96 final size:94
Alignment explanation
Indices: 74165150--74165681 Score: 830
Period size: 96 Copynumber: 5.6 Consensus size: 94
74165140 AATTCTAAAT
* *
74165150 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74165215 CCGATGTGATGAATGTGAAAGTGTATATG
66 CCGATGTGATGAATGTGAAAGTGTATATA
* *
74165244 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
74165309 GGCCGATGTGATGAATGTGAAAGTGTATATA
64 GGCCGATGTGATGAATGTGAAAGTGTATATA
74165340 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74165405 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* * *
74165436 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74165501 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
** *
74165532 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74165597 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
74165626 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74165682 TCCCGAAGGG
Statistics
Matches: 409, Mismatches: 25, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
94 135 0.33
96 274 0.67
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74165408 original size:143 final size:143
Alignment explanation
Indices: 74165150--74165681 Score: 861
Period size: 143 Copynumber: 3.7 Consensus size: 143
74165140 AATTCTAAAT
* *
74165150 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
**
74165215 CCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
74165280 AAGTGTATATATA
131 AAGTGTATATATA
*
74165293 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74165358 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
74165423 AAGTGTATATATA
131 AAGTGTATATATA
* * *
74165436 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74165501 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
66 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
*
74165566 GAAAGTG--TATATG
129 GAAAGTGTATATATA
* * * * *
74165579 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
74165644 CCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74165682 TCCCGAAGGG
Statistics
Matches: 363, Mismatches: 24, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 13 0.04
143 304 0.84
145 46 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATA
Found at i:74167750 original size:43 final size:43
Alignment explanation
Indices: 74167702--74167930 Score: 422
Period size: 43 Copynumber: 5.3 Consensus size: 43
74167692 TTGGTTTTCA
*
74167702 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
74167745 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
74167788 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
74167831 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* *
74167874 GCACTAAGTGTGCGGGCAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
74167917 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74167931 TGTAACACCC
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 181 1.00
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:74170287 original size:40 final size:40
Alignment explanation
Indices: 74170232--74170349 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
74170222 AAGCACTATG
*
74170232 TGTGCGAATTGATATATCCGGGATAAGACCTGAAGGCATT
1 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
*
74170272 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
* * * *
74170312 CGTGCGAGTTGCTATA-CTCGGGTTAAGACCCGAAGGCA
1 TGTGCGAATTGATATATC-CGGGATAAGACCCGAAGGCA
74170350 ATTGAGCTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
Found at i:74170479 original size:40 final size:40
Alignment explanation
Indices: 74170284--74170482 Score: 156
Period size: 40 Copynumber: 5.0 Consensus size: 40
74170274 TGCGAATTGA
** *
74170284 TATATCCGGGCTAAGACCCGAAG-GCATTCGTGC-GAGTTGC
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTG-G-TGT
* ** * *
74170324 TATA-CTCGGGTTAAGACCCGAAG-GCAATT-GAGCTTGTGGT
1 TATATC-CGGGCTAAGTTCCGAAGAGC-ATTCGTGCTGGT-GT
* * *
74170364 TATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
** *
74170404 GGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
* * * *
74170444 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTG
74170483 ACATGTATTC
Statistics
Matches: 128, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 114 0.89
41 12 0.09
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGT
Found at i:74174070 original size:47 final size:47
Alignment explanation
Indices: 74174016--74174547 Score: 812
Period size: 47 Copynumber: 11.2 Consensus size: 47
74174006 AATTCTAAAT
* *
74174016 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
74174063 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74174110 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
74174159 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74174206 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74174253 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74174302 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
74174349 TGCGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
*
74174398 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
74174445 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
74174492 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
74174539 TGTGATAAG
1 TGTGATAAG
74174548 TCCCGAAGGG
Statistics
Matches: 446, Mismatches: 33, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
47 313 0.70
49 133 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74174198 original size:96 final size:94
Alignment explanation
Indices: 74174016--74174547 Score: 821
Period size: 96 Copynumber: 5.6 Consensus size: 94
74174006 AATTCTAAAT
* *
74174016 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74174081 CCGATGTGATGAATGTGAAAGTGTATATG
66 CCGATGTGATGAATGTGAAAGTGTATATA
* *
74174110 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
74174175 GGCCGATGTGATGAATGTGAAAGTGTATATA
64 GGCCGATGTGATGAATGTGAAAGTGTATATA
74174206 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74174271 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* * *
74174302 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74174367 CCGATGTGATAAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
** *
74174398 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
74174463 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * ** * * * * *
74174492 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74174548 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 135 0.33
96 272 0.67
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:74174274 original size:143 final size:143
Alignment explanation
Indices: 74174016--74174547 Score: 852
Period size: 143 Copynumber: 3.7 Consensus size: 143
74174006 AATTCTAAAT
* *
74174016 TGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
**
74174081 CCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
74174146 AAGTGTATATATA
131 AAGTGTATATATA
*
74174159 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74174224 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
74174289 AAGTGTATATATA
131 AAGTGTATATATA
* * *
74174302 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
74174367 CCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
66 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
*
74174432 GAAAGTG--TATATG
129 GAAAGTGTATATATA
* * * * *
74174445 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
74174510 CCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74174548 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 26, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
141 13 0.04
143 302 0.84
145 46 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATA
Found at i:74182831 original size:25 final size:25
Alignment explanation
Indices: 74182797--74182866 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
74182787 ATCTTTTAAT
* *
74182797 AATTGAGGCAAAGCCCTTTTTGATA
1 AATTGGGGCAAAGCCCTTTTGGATA
74182822 AATTGGGGCAAAGCCCTTTTGGATA
1 AATTGGGGCAAAGCCCTTTTGGATA
* * *
74182847 AACTGGGGCATAGCTCTTTT
1 AATTGGGGCAAAGCCCTTTT
74182867 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (25 bp):
AATTGGGGCAAAGCCCTTTTGGATA
Found at i:74182842 original size:24 final size:24
Alignment explanation
Indices: 74182789--74182866 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 24
74182779 GGCCTAGCAT
* *
74182789 CTTTTAAT-AATTGAGGCAAAGCC
1 CTTTTGATAAATTGGGGCAAAGCC
74182812 CTTTTTGATAAATTGGGGCAAAGCC
1 C-TTTTGATAAATTGGGGCAAAGCC
* * *
74182837 CTTTTGGATAAACTGGGGCATAGCT
1 CTTTT-GATAAATTGGGGCAAAGCC
74182862 CTTTT
1 CTTTT
74182867 AGCACTTCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.02
24 10 0.21
25 36 0.77
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (24 bp):
CTTTTGATAAATTGGGGCAAAGCC
Found at i:74183100 original size:27 final size:27
Alignment explanation
Indices: 74183070--74183287 Score: 312
Period size: 27 Copynumber: 8.1 Consensus size: 27
74183060 GGGCAAAATG
* * * *
74183070 GTAATTTTACCCTATAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74183097 GTAATTCTACCCTAAAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74183124 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74183151 GTAGTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74183178 GTAGTTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74183205 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
74183232 GTAATTCTACCCTA-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74183258 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
74183285 GTA
1 GTA
74183288 TTTTACGAAT
Statistics
Matches: 179, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
26 26 0.15
27 153 0.85
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:74183356 original size:27 final size:27
Alignment explanation
Indices: 74183328--74183466 Score: 208
Period size: 27 Copynumber: 5.2 Consensus size: 27
74183318 CACAAATTAG
*
74183328 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
74183355 GGGTATTTTGGTAATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
74183382 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
74183409 TGGTATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
**
74183435 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
74183462 GGGTA
1 GGGTA
74183467 AAACGATAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.23
27 77 0.77
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:74183370 original size:54 final size:53
Alignment explanation
Indices: 74183312--74183466 Score: 211
Period size: 54 Copynumber: 2.9 Consensus size: 53
74183302 GGTTTTTCGA
* * *
74183312 TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACTA-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* * *
74183366 TAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAATGGTATTTTGG
1 TAATTTTACAAACT-AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
* **
74183420 TAATTTTACAAACCAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA
1 TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
74183467 AAACGATAAT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 29 0.33
54 58 0.66
55 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (53 bp):
TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
Found at i:74183476 original size:27 final size:27
Alignment explanation
Indices: 74183417--74183736 Score: 336
Period size: 27 Copynumber: 11.9 Consensus size: 27
74183407 AATGGTATTT
* * ***
74183417 TGGTAATTTTACAAA-CCAGGGTATTT
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * *
74183443 TGGTAATTTTGTAAACCAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * * *
74183470 CGATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
*
74183497 TAGTAATTTTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
74183524 TGGTAATTTTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
**
74183551 TGGTAATTTTATAAATTAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * **
74183578 TAGTAATTTTGTAAATTAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* *
74183605 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
*
74183632 TGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * *
74183659 CGGTAATTCTATAAATCAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * ***
74183686 TGGTAATTTTGTAAATCGGGGGTACTT
1 TGGTAATTTTATAAATCGAGGGTAAAA
* * *
74183713 TGATAATTTTACAAGTCGAGGGTA
1 TGGTAATTTTATAAATCGAGGGTA
74183737 TTTCAGTAAT
Statistics
Matches: 250, Mismatches: 43, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
26 13 0.05
27 237 0.95
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.33
Consensus pattern (27 bp):
TGGTAATTTTATAAATCGAGGGTAAAA
Found at i:74183746 original size:27 final size:27
Alignment explanation
Indices: 74183605--74183856 Score: 167
Period size: 27 Copynumber: 9.4 Consensus size: 27
74183595 AAGGGTAAAA
* * **
74183605 CGGTAATTCTATAAATCGAGGGTAAAAT
1 CGGTAATTTTACAAATCGAGGGT-ATTT
* * ***
74183633 -GGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTACAAATCGAGGGTATTT
* * * **
74183659 CGGTAATTCTATAAATCAAGGGTAAAAT
1 CGGTAATTTTACAAATCGAGGGT-ATTT
** *
74183687 -GGTAATTTTGTAAATCGGGGGTACTTT
1 CGGTAATTTTACAAATCGAGGGTA-TTT
* *
74183714 -GATAATTTTACAAGTCGAGGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
* *
74183740 CAGTAATTTTAC-AATCGACGGT-TTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
74183765 CGGTAATTTTATAAATC-AGGGGTACTTT
1 CGGTAATTTTACAAATCGA-GGGTA-TTT
* * *
74183793 -GGTAATTTTACAAGTCCAAGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
74183819 CAGTAATTTTACAAATCGAGGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
74183846 TGGTAATTTTA
1 CGGTAATTTTA
74183857 GTAAACTAAA
Statistics
Matches: 184, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
25 14 0.08
26 25 0.14
27 138 0.75
28 7 0.04
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (27 bp):
CGGTAATTTTACAAATCGAGGGTATTT
Found at i:74183746 original size:81 final size:81
Alignment explanation
Indices: 74183443--74183861 Score: 328
Period size: 81 Copynumber: 5.2 Consensus size: 81
74183433 CAGGGTATTT
* * * * * * **
74183443 TGGTAATTTTGTAAACCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT-AGTAATTTT
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGT-AAATCAGTAATTTT
74183507 ATAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* **
74183524 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTATAAATTAAGGGTAAAAT-AGTAATTTT
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGT-AAATCAGTAATTTT
* **
74183588 GTAAATTAAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * * * * *
74183605 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAATCAGTAATTTTA
*
74183670 TAAATCAAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *** * * **
74183686 TGGTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTA
1 TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAATCAGTAATTTTA
* * **
74183751 -CAATCGACGGT--TT
66 TAAATCGAGGGTAAAA
*** * * * **
74183764 TCGGTAATTTTATAAATC-AGGGGTACTTTGGTAATTTTACAAGTCCAAGGTATTTCAGTAATTT
1 T-GGTAATTTTATAAATCGA-GGGTAAAATGGTAATTTTACAAATCGAGGGTAAATCAGTAATTT
* ***
74183828 TACAAATCGAGGGTATTT
64 TATAAATCGAGGGTAAAA
74183846 TGGTAATTTTAGTAAA
1 TGGTAATTTTA-TAAA
74183862 CTAAAGTATT
Statistics
Matches: 281, Mismatches: 50, Indels: 13
0.82 0.15 0.04
Matches are distributed among these distances:
78 1 0.00
79 58 0.21
80 20 0.07
81 195 0.69
82 7 0.02
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (81 bp):
TGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAATCAGTAATTTTA
TAAATCGAGGGTAAAA
Found at i:74183790 original size:79 final size:81
Alignment explanation
Indices: 74183687--74183861 Score: 264
Period size: 79 Copynumber: 2.2 Consensus size: 81
74183677 AGGGTAAAAT
* * * *
74183687 GGTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 GGTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
74183752 -AATCGACGGT-TTTC
66 AAATCGACGGTATTTC
*
74183766 GGTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
1 GGTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
* *
74183831 AAATCGAGGGTATTTT
66 AAATCGACGGTATTTC
74183847 GGTAATTTTAGTAAA
1 GGTAATTTTA-TAAA
74183862 CTAAAGTATT
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 60 0.70
80 9 0.10
81 13 0.15
82 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
GGTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCCAAGGTATTTCAGTAATTTTAC
AAATCGACGGTATTTC
Found at i:74186221 original size:25 final size:25
Alignment explanation
Indices: 74186202--74186290 Score: 151
Period size: 25 Copynumber: 3.6 Consensus size: 25
74186192 TATAACTAGA
74186202 GGCAAAGCCCTTTTTGATAAACTGG
1 GGCAAAGCCCTTTTTGATAAACTGG
*
74186227 GGCAAAGCCCTTTTTGATAAACTAG
1 GGCAAAGCCCTTTTTGATAAACTGG
*
74186252 GGCAAAGCCCTTTTCGATAAACTGG
1 GGCAAAGCCCTTTTTGATAAACTGG
*
74186277 GGCATAGCCCTTTT
1 GGCAAAGCCCTTTT
74186291 AGAACTTCCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
GGCAAAGCCCTTTTTGATAAACTGG
Found at i:74186257 original size:50 final size:51
Alignment explanation
Indices: 74186195--74186290 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 51
74186185 TTTATCATAT
*
74186195 AACTAGAGGCAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGAGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTTGATA
*
74186246 AACTAG-GGCAAAGCCCTTTTCGATAAACTGGGGCATAGCCCTTTT
1 AACTAGAGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTT
74186291 AGAACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
50 37 0.86
51 6 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (51 bp):
AACTAGAGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTTGATA
Found at i:74186712 original size:27 final size:27
Alignment explanation
Indices: 74186493--74186708 Score: 263
Period size: 27 Copynumber: 8.0 Consensus size: 27
74186483 GGGGCAAAAT
* * *
74186493 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
74186520 GGTAATTCTACCCTAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
74186547 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* ** *
74186574 GATGGTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74186601 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74186628 GGTAATTTTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74186655 AGTAATTCTACCCTACAAGGGGATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74186682 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
74186709 AGTATTTTAC
Statistics
Matches: 165, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.02
27 158 0.96
28 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:74186797 original size:27 final size:27
Alignment explanation
Indices: 74186712--74186798 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
74186702 GTATTTCAGT
* * *
74186712 ATTTTACGAATC-GAGGTTTTTTCGATA
1 ATTTTACAAATCAGAGGTATTTTGGA-A
* * * *
74186739 ATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAATCAGAGGTATTTTGGAA
74186766 ATTTTACAAATCAGAGGTATTTTGGAA
1 ATTTTACAAATCAGAGGTATTTTGGAA
74186793 ATTTTA
1 ATTTTA
74186799 TAAACATTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 39 0.81
28 9 0.19
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACAAATCAGAGGTATTTTGGAA
Found at i:74186808 original size:38 final size:38
Alignment explanation
Indices: 74186766--74186841 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
74186756 TATTTTGGTA
* * *
74186766 ATTTTACAAATC-AGAGGTATTTTGGAAATTTTATAAAC
1 ATTTTACAAACCAAG-GGTATTTTAGAAATTTTACAAAC
* *
74186804 ATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
1 ATTTTACAAACCAAGGGTATTTTAGAAATTTTACAAAC
74186842 CAAGGGTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 30 0.94
39 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (38 bp):
ATTTTACAAACCAAGGGTATTTTAGAAATTTTACAAAC
Found at i:74186836 original size:27 final size:27
Alignment explanation
Indices: 74186804--74186903 Score: 155
Period size: 27 Copynumber: 3.7 Consensus size: 27
74186794 TTTTATAAAC
* *
74186804 ATTTTATAAACCAAGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
74186831 ATTTTACAAACCAAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
74186858 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
**
74186885 ATTTTGTAAACCAAGGGTA
1 ATTTTACAAACCAAGGGTA
74186904 AAATAATAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTTACAAACCAAGGGTATTTTGGTA
Found at i:74186913 original size:27 final size:27
Alignment explanation
Indices: 74186883--74187173 Score: 249
Period size: 27 Copynumber: 10.8 Consensus size: 27
74186873 GGTATTTTGG
* * * *
74186883 TAATTTTGTAAACCAAGGGTAAAATAA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
74186910 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
*
74186937 TAATTTTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* *
74186964 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
74186991 TAATTTTATAAATTGAGGATAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * *
74187018 TAACTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
74187045 TAATTCTATAAATTGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* ** * *
74187072 TAATTCTATAAATCGAAAGAAAAACGA
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * * *
74187099 TAATTCTATAAATTGAAGGTGAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * * *
74187126 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAATGA
* * *
74187153 TAATTCTGTAAATCGGGGGTA
1 TAATTTTATAAATCGAGGGTA
74187174 CTTTTATACT
Statistics
Matches: 221, Mismatches: 43, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 221 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAATGA
Found at i:74186930 original size:54 final size:54
Alignment explanation
Indices: 74186880--74187173 Score: 302
Period size: 54 Copynumber: 5.4 Consensus size: 54
74186870 AGGGGTATTT
* * * *
74186880 TGGTAATTTTGTAAACCAAGGGTAAAATAATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * *
74186934 CGATAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * *
74186988 TGGTAATTTTATAAATTGAGGATAAAACGATAACTT-TGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAA-TTCTGTAAATCGAGGGTAAAA
* * * * * ** *
74187042 CGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAAAGAAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * * * * *
74187096 CGATAATTCTATAAATTGAAGGTGAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
* * * *
74187150 CGGTAATTCTGTAAATCGGGGGTA
1 TGGTAATTTTATAAATCGAGGGTA
74187174 CTTTTATACT
Statistics
Matches: 201, Mismatches: 37, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 2 0.01
54 197 0.98
55 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (54 bp):
TGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAA
Found at i:74187281 original size:27 final size:26
Alignment explanation
Indices: 74187184--74187322 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 26
74187174 CTTTTATACT
*
74187184 TTTTACAAGTCGAGGGTATTTCAGTAA
1 TTTTACAA-TCGAGGGTATTTCGGTAA
*
74187211 TTTTACAATCGACGGTATTTCGGTAA
1 TTTTACAATCGAGGGTATTTCGGTAA
* * *
74187237 TTTTATAAACTGGGGGTACTTT-GGTAA
1 TTTTACAATC-GAGGGTA-TTTCGGTAA
* *
74187264 TTTTACAAGTCGAAGGTATTTCAGTAA
1 TTTTACAA-TCGAGGGTATTTCGGTAA
74187291 TTTTACAAATCGAGGGTATTTCGGTAA
1 TTTTAC-AATCGAGGGTATTTCGGTAA
74187318 TTTTA
1 TTTTA
74187323 GTAAACTAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
26 27 0.29
27 61 0.65
28 6 0.06
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (26 bp):
TTTTACAATCGAGGGTATTTCGGTAA
Found at i:74187309 original size:81 final size:83
Alignment explanation
Indices: 74187135--74187329 Score: 263
Period size: 81 Copynumber: 2.4 Consensus size: 83
74187125 GTAATTCTGT
*** * * * * *
74187135 AAATCGAGGGTAAAACGGTAATTCTGTAAA-TCGGGGGTACTTTTATACTTTTTACAAGTCGAGG
1 AAATCGAGGGTATTTCGGTAATTTTATAAACTCGGGGGTACTTTGATACATTTTACAAGTCGAAG
74187199 GTATTTCAGTAATTTTAC
66 GTATTTCAGTAATTTTAC
* *
74187217 -AATCGACGGTATTTCGGTAATTTTATAAACT-GGGGGTACTTTGGTA-ATTTTACAAGTCGAAG
1 AAATCGAGGGTATTTCGGTAATTTTATAAACTCGGGGGTACTTTGATACATTTTACAAGTCGAAG
74187279 GTATTTCAGTAATTTTAC
66 GTATTTCAGTAATTTTAC
74187297 AAATCGAGGGTATTTCGGTAATTTTAGTAAACT
1 AAATCGAGGGTATTTCGGTAATTTTA-TAAACT
74187330 AAAGTATTCT
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
80 32 0.32
81 60 0.61
82 7 0.07
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (83 bp):
AAATCGAGGGTATTTCGGTAATTTTATAAACTCGGGGGTACTTTGATACATTTTACAAGTCGAAG
GTATTTCAGTAATTTTAC
Found at i:74187337 original size:54 final size:53
Alignment explanation
Indices: 74187184--74187322 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 53
74187174 CTTTTATACT
* * * *
74187184 TTTTACAAGTCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTACAATCGAAGGTATTTCAGTAA
* *
74187237 TTTTATAAA-CTGGGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCAGTAA
1 TTTTACAAATC-GAGGGTA-TTTCGGTAATTTTACAA-TCGAAGGTATTTCAGTAA
74187291 TTTTACAAATCGAGGGTATTTCGGTAATTTTA
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTA
74187323 GTAAACTAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 28 0.38
54 43 0.59
55 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (53 bp):
TTTTACAAATCGAGGGTATTTCGGTAATTTTACAATCGAAGGTATTTCAGTAA
Found at i:74190679 original size:23 final size:21
Alignment explanation
Indices: 74190651--74190699 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
74190641 TAAAAAAGGG
74190651 TAATAAAT-AAATAGATAAATAGA
1 TAATAAATAAAATAG-T-AATA-A
74190674 TAAT-AATAAAATAGTAATAA
1 TAATAAATAAAATAGTAATAA
74190694 TAATAA
1 TAATAA
74190700 TGAAGGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.21
21 5 0.21
22 4 0.17
23 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (21 bp):
TAATAAATAAAATAGTAATAA
Found at i:74190691 original size:14 final size:15
Alignment explanation
Indices: 74190667--74190696 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
74190657 ATAAATAGAT
74190667 AAATAGATAATAATA
1 AAATAGATAATAATA
74190682 AAATAG-TAATAATA
1 AAATAGATAATAATA
74190696 A
1 A
74190697 TAATGAAGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AAATAGATAATAATA
Found at i:74190858 original size:5 final size:4
Alignment explanation
Indices: 74190735--74190899 Score: 92
Period size: 4 Copynumber: 41.8 Consensus size: 4
74190725 CGATGATAGA
* * * * *
74190735 AAAT AAAA AAAT AAA- ATAT AAA- AAAT GAAG GAAT -AAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * *
74190780 AAAT AAAT ACAAG GATT AAAAT AAA- AAAT AAA- ATAT AAAT GAAT AAAT
1 AAAT AAAT A-AAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * *
74190828 AAGT AAAT GAAC AAAT AAAT AAAT AAAAT AAA- AGGAA- CAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A--AAT AAAT AAAT AAAT
* *
74190877 AAAC AAGT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAA
74190900 AGAATTAAAA
Statistics
Matches: 121, Mismatches: 29, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
3 16 0.13
4 95 0.79
5 10 0.08
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:74190870 original size:41 final size:42
Alignment explanation
Indices: 74190798--74190901 Score: 133
Period size: 41 Copynumber: 2.5 Consensus size: 42
74190788 ACAAGGATTA
* * *
74190798 AAATAAA-AAATAAAATATAAATGAATAAATAAGTAAATGAAC
1 AAATAAATAAATAAAATA-AAAGGAATAAATAAATAAATAAAC
*
74190840 AAATAAATAAATAAAATAAAAGGAA-CAATAAATAAATAAAC
1 AAATAAATAAATAAAATAAAAGGAATAAATAAATAAATAAAC
*
74190881 AAGTAAATAAAT-AAATAAAAG
1 AAATAAATAAATAAAATAAAAG
74190902 AATTAAAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 9 0.16
41 24 0.43
42 13 0.23
43 10 0.18
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (42 bp):
AAATAAATAAATAAAATAAAAGGAATAAATAAATAAATAAAC
Found at i:74192129 original size:13 final size:14
Alignment explanation
Indices: 74192113--74192141 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
74192103 TGTAAATGGA
74192113 ATTTGGACTTT-TT
1 ATTTGGACTTTATT
74192126 ATTTGGACTTTATT
1 ATTTGGACTTTATT
74192140 AT
1 AT
74192142 ATTTTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (14 bp):
ATTTGGACTTTATT
Found at i:74193612 original size:30 final size:30
Alignment explanation
Indices: 74193572--74193630 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
74193562 TTTACGAGCC
* *
74193572 TAGGGACCAAAGTGCAAATATGTAAAAGTT
1 TAGGGACCAAAATGCAAATATGAAAAAGTT
* * *
74193602 TAGGGGCCAAAATGTAAATTTGAAAAAGT
1 TAGGGACCAAAATGCAAATATGAAAAAGT
74193631 ATGATTTATG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (30 bp):
TAGGGACCAAAATGCAAATATGAAAAAGTT
Found at i:74205975 original size:2 final size:2
Alignment explanation
Indices: 74205968--74206001 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
74205958 AGTCCTTGCA
*
74205968 AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
74206002 GAATCTTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:74212396 original size:28 final size:27
Alignment explanation
Indices: 74212338--74212489 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
74212328 TAAATTGTGC
* *
74212338 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
74212365 AGCACTAAGTGTGCGAGTTTGACTATGC
1 AGCACTAAGTGTGCGAG-TTGACTATGT
74212393 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
74212420 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
74212448 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
74212475 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74212490 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:74212400 original size:55 final size:55
Alignment explanation
Indices: 74212335--74212489 Score: 238
Period size: 55 Copynumber: 2.8 Consensus size: 55
74212325 GTTTAAATTG
* *
74212335 TGCAGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTA
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
* *
74212390 TGCAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTA
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
* * * *
74212445 TGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
74212490 GACTTAATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
TGCAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTA
Found at i:74220480 original size:27 final size:27
Alignment explanation
Indices: 74220443--74220593 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
74220433 TAAATTGTGC
* *
74220443 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
74220470 AGCACTAAGTGTGCGAGTTTGACTATG-
1 AGCACTAAGTGTGCGAG-TTGACTATGT
74220497 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
74220524 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
74220552 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
74220579 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74220594 GACTTAATAT
Statistics
Matches: 116, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
26 9 0.08
27 73 0.63
28 34 0.29
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:74220562 original size:82 final size:81
Alignment explanation
Indices: 74220443--74220593 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
74220433 TAAATTGTGC
74220443 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTAT-GAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAG-TTGACTATAGAGCACTAAGT
74220507 GTGCGAGTTGACTATGT
65 GTGCGAGTTGACTATGT
* * * * *
74220524 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTGCGAGTTGACTATAGAGCACTAAGT
74220589 GTGCG
65 GTGCG
74220594 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 24 0.38
82 39 0.62
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATAGAGCACTAAGTG
TGCGAGTTGACTATGT
Found at i:74227386 original size:26 final size:26
Alignment explanation
Indices: 74227357--74227465 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
74227347 ATGAAATTCC
* *
74227357 TATCTTGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
74227383 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
74227409 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
74227435 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
74227461 TATCA
1 TATCA
74227466 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:74234473 original size:26 final size:26
Alignment explanation
Indices: 74234444--74234552 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
74234434 ATGAAATTCC
* * *
74234444 TATCTTGGAACATTTACCTAAACTAT
1 TATCATGGAACATTTACCTAATCCAT
*
74234470 TATCATAGAACATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAATCCAT
*
74234496 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAATCCAT
*
74234522 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAATCCAT
74234548 TATCA
1 TATCA
74234553 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAATCCAT
Found at i:74236650 original size:30 final size:30
Alignment explanation
Indices: 74236616--74236676 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74236606 TCCTTAACTC
74236616 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74236646 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74236676 A
1 A
74236677 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74238537 original size:36 final size:36
Alignment explanation
Indices: 74238497--74238569 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
74238487 TCACTTACAC
74238497 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
1 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
74238533 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
1 ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
74238569 A
1 A
74238570 CTTTAGAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (36 bp):
ATAGTTCCTTATTTGAGTTTACGGAGCCCAAAACAT
Found at i:74241130 original size:30 final size:30
Alignment explanation
Indices: 74241096--74241156 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74241086 TCCTTAACTC
74241096 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74241126 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74241156 A
1 A
74241157 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74243452 original size:19 final size:18
Alignment explanation
Indices: 74243425--74243475 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
74243415 TATAAAAATT
74243425 AATTT-TAAAAATTAAAA
1 AATTTATAAAAATTAAAA
*
74243442 ATATTTATAAAATTTTAAAA
1 A-ATTTATAAAA-ATTAAAA
*
74243462 AATATATAAAAATT
1 AATTTATAAAAATT
74243476 GACAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 1 0.04
18 6 0.21
19 14 0.50
20 7 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTTATAAAAATTAAAA
Found at i:74246733 original size:19 final size:18
Alignment explanation
Indices: 74246702--74246740 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
74246692 CTTCCTAAAC
74246702 AAAATATTAAAAAAATCA
1 AAAATATTAAAAAAATCA
* *
74246720 AAAAGTATTTAAAAACTCA
1 AAAA-TATTAAAAAAATCA
74246739 AA
1 AA
74246741 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAATATTAAAAAAATCA
Found at i:74249768 original size:159 final size:159
Alignment explanation
Indices: 74249479--74249809 Score: 522
Period size: 159 Copynumber: 2.1 Consensus size: 159
74249469 GTGTGCTCTC
74249479 TACACGCCCATGTCCTCCAGCCGTGTAACTCTCTGACTATAACGTCAGCACCAATCTAGGGTCAC
1 TACACGCCCATGTCCTCCAGCCGTGTAACTCTCTGACTATAACGTCAGCACCAATCTAGGGTCAC
*
74249544 ACGGCCACATCACACGCTCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTCAT
66 ACGGCCACATCACACGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTCAT
* * *
74249609 AAAAAGTTGTAGACTTTACATGGCCAGAG
131 AAAAAGGTGTAGACTTCACATAGCCAGAG
* * *
74249638 TACACGCCCATGTCCTCC-GACCGTGTAACTCT-TCGACTATGACGTCAGCAGCAATTTAGGGTC
1 TACACGCCCATGTCCTCCAG-CCGTGTAACTCTCT-GACTATAACGTCAGCACCAATCTAGGGTC
* * * *
74249701 ACACGGCCACATCATATGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAATTAAATGATTTTTTC
64 ACACGGCCACATCACACGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTC
74249766 ATAAAAAGGTGTAGACTTCACATAGCCAGAG
129 ATAAAAAGGTGTAGACTTCACATAGCCAGAG
*
74249797 TACACGCCTATGT
1 TACACGCCCATGT
74249810 GGGTAGGCCG
Statistics
Matches: 158, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
158 2 0.01
159 156 0.99
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (159 bp):
TACACGCCCATGTCCTCCAGCCGTGTAACTCTCTGACTATAACGTCAGCACCAATCTAGGGTCAC
ACGGCCACATCACACGCCCGTGTGGCCAGACCGTGTGGTTAATTAAAAGTAAATGAATTTTTCAT
AAAAAGGTGTAGACTTCACATAGCCAGAG
Found at i:74251256 original size:43 final size:43
Alignment explanation
Indices: 74251207--74251288 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
74251197 ATATGTATCA
* *
74251207 CATCCATTATAAACTCAGACCACTCAATGAGCTCAGATGATTG
1 CATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGATTG
* *
74251250 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATG
1 CATCCATAATAAACTCAGACCACTCAACGAGCTCAGATG
74251289 CCACATATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGATTG
Found at i:74256407 original size:44 final size:43
Alignment explanation
Indices: 74256343--74256501 Score: 159
Period size: 44 Copynumber: 3.7 Consensus size: 43
74256333 TATGTGTTTT
*
74256343 CGTGTAAGACCACATTTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGACTT-TGATTTA
* *
74256387 CGTGTAAGATCACGTCTGGGACGTTGGCATCGTAC-TTGAATTT-
1 CGTGTAAGACCACATCTGGGACGTTGGCATCG-ACTTTG-ATTTA
* * *
74256430 -GTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCGA-CTTTGATTTA
*
74256472 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACGTTGGCAT
74256502 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
41 4 0.04
42 27 0.28
43 28 0.29
44 35 0.36
45 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGACTTTGATTTA
Found at i:74256500 original size:43 final size:43
Alignment explanation
Indices: 74256343--74256501 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 43
74256333 TATGTGTTTT
* *
74256343 CGTGTAAGACCACATTTGGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * *
74256387 CGTGTAAGATCACGTCTGGGACGTTGGCATCG-TACTTGAATT-
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTG-ATTA
* * *
74256429 TGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCGATATTTGATTA
*
74256472 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACGTTGGCAT
74256502 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 32 0.34
44 31 0.33
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTA
Found at i:74262199 original size:10 final size:10
Alignment explanation
Indices: 74262183--74262212 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
74262173 TTAAAACTTG
74262183 AATTTAAAAT
1 AATTTAAAAT
*
74262193 CATTTAAAAT
1 AATTTAAAAT
74262203 AATTTAAAAT
1 AATTTAAAAT
74262213 TATTAGTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:74264000 original size:371 final size:370
Alignment explanation
Indices: 74263317--74264057 Score: 1401
Period size: 371 Copynumber: 2.0 Consensus size: 370
74263307 ATAGTGTCCT
* *
74263317 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGATCCTGTAACGCATCTTCT
1 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
*
74263382 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCTTCCCAAAAGTAGTTTTTCACATCAT
66 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
74263447 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
131 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
*
74263512 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACGA
196 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACAA
74263577 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
261 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
* *
74263642 CCGCGAGATTTTCAGCTCTTTTCTTGTCCTGAATTTCCAAGTCAAA
326 CCGCGAGA-TTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
74263688 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
1 CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
74263753 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
66 GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
74263818 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
131 TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
*
74263883 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGGGAACAA
196 GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACAA
74263948 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
261 ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
*
74264013 CTGCGAGATTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
326 CCGCGAGATTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
74264058 TTCTTGTAAT
Statistics
Matches: 362, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
370 35 0.10
371 327 0.90
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (370 bp):
CCGGTTGGCCTTGAGTGGCAGTGTTCCAATATTTTTGATATTTCTGAACATGTAACGCATCTTCT
GATGACTTGATCTGCACATCTGTGAAACAGAAATGGATCGTCCCAAAAGTAGTTTTTCACATCAT
TAAAGAAACGCTTCTTTTGCTGGTGTGTTAACCCTTTTGGGATAATGTTAGCAGCTAAAAAATTT
GCGATGTCTGCAAACCAAGGTACCTCGTAGTTAGATATAGTGAAAAATTGTTCTTCAGAGAACAA
ATCATTTATTTCCACGTCATCTAGTTCTCTGGTATTGGATTTCTCGAGCCTGGACAGATGATCAG
CCGCGAGATTTCAGCTCCTTTCTTGTCCTAAATTTCCAAGTCAAA
Found at i:74270588 original size:14 final size:14
Alignment explanation
Indices: 74270571--74270610 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
74270561 AAAAAAGAGC
74270571 GAAAAGAAAAATGA-
1 GAAAAGAAAAAT-AT
74270585 GAAAAGAAAAATAT
1 GAAAAGAAAAATAT
74270599 GAAAAAGAAAAA
1 G-AAAAGAAAAA
74270611 GAAAATGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 1 0.04
14 13 0.54
15 10 0.42
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.07
Consensus pattern (14 bp):
GAAAAGAAAAATAT
Found at i:74270595 original size:15 final size:16
Alignment explanation
Indices: 74270571--74270610 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
74270561 AAAAAAGAGC
74270571 GAAAAG-AAAA-ATGA
1 GAAAAGAAAAATATGA
74270585 GAAAAGAAAAATATGA
1 GAAAAGAAAAATATGA
74270601 -AAAAGAAAAA
1 GAAAAGAAAAA
74270611 GAAAATGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 14 0.58
16 4 0.17
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.07
Consensus pattern (16 bp):
GAAAAGAAAAATATGA
Found at i:74270627 original size:14 final size:14
Alignment explanation
Indices: 74270610--74270637 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74270600 AAAAAGAAAA
74270610 AGAAAATGAGTGTG
1 AGAAAATGAGTGTG
74270624 AGAAAATGAGTGTG
1 AGAAAATGAGTGTG
74270638 TTTGCAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (14 bp):
AGAAAATGAGTGTG
Found at i:74278529 original size:93 final size:93
Alignment explanation
Indices: 74278417--74278588 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
74278407 GCCCATAAGT
* *
74278417 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74278482 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
74278510 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
74278575 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
74278589 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:74278584 original size:46 final size:46
Alignment explanation
Indices: 74278409--74278584 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
74278399 TGTAACCCGC
* *
74278409 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
74278455 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
74278501 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74278548 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
74278585 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 30 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:74283340 original size:19 final size:19
Alignment explanation
Indices: 74283313--74283359 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
74283303 ATAGGGGACG
74283313 CGCCCGTGTGTTCTCTACA
1 CGCCCGTGTGTTCTCTACA
*
74283332 CGCCAGTGTGTTCTCTACA
1 CGCCCGTGTGTTCTCTACA
74283351 CGCCCGTGT
1 CGCCCGTGT
74283360 CCTCCGGCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.36, G:0.23, T:0.30
Consensus pattern (19 bp):
CGCCCGTGTGTTCTCTACA
Found at i:74284967 original size:43 final size:43
Alignment explanation
Indices: 74284903--74284985 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
74284893 ATATGTATCA
* * * *
74284903 CATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGCTCG
1 CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGCTCG
74284946 CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGC
1 CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGC
74284986 CACATATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.19
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCACTCAAAGAGCTCGGATGCTCG
Found at i:74303005 original size:25 final size:25
Alignment explanation
Indices: 74302977--74303082 Score: 90
Period size: 25 Copynumber: 4.3 Consensus size: 25
74302967 CCATATAATA
74302977 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATGTGAGCCATGTAACG
* * * *** *
74303002 GGAAGCTTATCTGGGTTGTATAACG
1 GGAAGCTCATGTGAGCCATGTAACG
* ** *
74303027 AGAAGCTCATAAGAGCCA--TAATCA
1 GGAAGCTCATGTGAGCCATGTAA-CG
74303051 GGAAGCTCATGTGAGCCATGTAACG
1 GGAAGCTCATGTGAGCCATGTAACG
74303076 GGAAGCT
1 GGAAGCT
74303083 TATACGGGCT
Statistics
Matches: 58, Mismatches: 20, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
23 3 0.05
24 16 0.28
25 36 0.62
26 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (25 bp):
GGAAGCTCATGTGAGCCATGTAACG
Found at i:74303057 original size:24 final size:24
Alignment explanation
Indices: 74303028--74303181 Score: 89
Period size: 24 Copynumber: 6.3 Consensus size: 24
74303018 TGTATAACGA
74303028 GAAGCTCATAAGAGCCATAATCAG
1 GAAGCTCATAAGAGCCATAATCAG
** *
74303052 GAAGCTCATGTGAGCCATGTAA-CGG
1 GAAGCTCATAAGAGCCA--TAATCAG
* * * * *
74303077 GAAGCTTATACGGGCTGTATAAT-AA
1 GAAGCTCATAAGAGC--CATAATCAG
*
74303102 GAAGCTCATAAGAGTCATAATCAG
1 GAAGCTCATAAGAGCCATAATCAG
** *
74303126 GAAGCTCATGCGAGCCAATAA-CGG
1 GAAGCTCATAAGAGCC-ATAATCAG
* ** *
74303150 GTAGCTCCGAAGAGCCATTAATTAG
1 GAAGCTCATAAGAGCCA-TAATCAG
74303175 GAAGCTC
1 GAAGCTC
74303182 CGAATAGCCA
Statistics
Matches: 93, Mismatches: 28, Indels: 17
0.67 0.20 0.12
Matches are distributed among these distances:
23 6 0.06
24 45 0.48
25 38 0.41
26 3 0.03
27 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCAG
Found at i:74303061 original size:74 final size:74
Alignment explanation
Indices: 74302971--74303155 Score: 277
Period size: 74 Copynumber: 2.5 Consensus size: 74
74302961 CTCAAGCCAT
* *
74302971 ATAAT-AGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTAT-CTGGGTTGTATAACGAGAAGCT
1 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATAC-GGGCTGTATAACAAGAAGCT
74303034 CATAAGAGCC
65 CATAAGAGCC
*
74303044 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATACGGGCTGTATAATAAGAAGCTC
1 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATACGGGCTGTATAACAAGAAGCTC
*
74303109 ATAAGAGTC
66 ATAAGAGCC
* * *
74303118 ATAATCAGGAAGCTCATGCGAGCCA-ATAACGGGTAGCT
1 ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCT
74303156 CCGAAGAGCC
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
73 16 0.16
74 86 0.83
75 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (74 bp):
ATAATCAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTTATACGGGCTGTATAACAAGAAGCTC
ATAAGAGCC
Found at i:74303202 original size:25 final size:25
Alignment explanation
Indices: 74303152--74303234 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
74303142 AATAACGGGT
* *
74303152 AGCTCCGAAGAGCCAT-TAATTAGGA
1 AGCTCCGAATAGCCATAT-ATTGGGA
74303177 AGCTCCGAATAGCCATATATTGGGA
1 AGCTCCGAATAGCCATATATTGGGA
*
74303202 AG-TTC-AAGTGAGCCA-ATATTGGGA
1 AGCTCCGAA-T-AGCCATATATTGGGA
74303226 AGCTCCGAA
1 AGCTCCGAA
74303235 GTGCTGTTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
23 2 0.04
24 14 0.29
25 30 0.61
26 3 0.06
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (25 bp):
AGCTCCGAATAGCCATATATTGGGA
Found at i:74303203 original size:74 final size:75
Alignment explanation
Indices: 74303096--74303271 Score: 171
Period size: 74 Copynumber: 2.4 Consensus size: 75
74303086 ACGGGCTGTA
* * ** * *
74303096 TAAT-AAGAAGCTCA-TAAGAGTCATA-ATCAGGAAGCTCATGCGAGCCAATAACGGGTAGCTCC
1 TAATCAAGAAGCTCACAAAGAGCCATATATTGGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCC
74303158 GAAGAGCCAT
66 GAAGAGCCAT
* * * * * * **
74303168 TAATTAGGAAGCTC-CGAATAGCCATATATTGGGAAGTTCAAGTGAGCCAATATTGGGAAGCTCC
1 TAATCAAGAAGCTCACAAAGAGCCATATATTGGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCC
* **
74303232 GAAGTGCTGT
66 GAAGAGCCAT
74303242 TAATCAAGAAGCTCACAAAGAGCCATATAT
1 TAATCAAGAAGCTCACAAAGAGCCATATAT
74303272 CAGAATGCTC
Statistics
Matches: 81, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
72 4 0.05
73 16 0.20
74 48 0.59
75 13 0.16
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (75 bp):
TAATCAAGAAGCTCACAAAGAGCCATATATTGGGAAGCTCAAGCGAGCCAATAACGGGAAGCTCC
GAAGAGCCAT
Found at i:74309803 original size:11 final size:9
Alignment explanation
Indices: 74309770--74309800 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
74309760 GTAATATTTT
74309770 TATA-TAAA
1 TATATTAAA
74309778 TATATTAAA
1 TATATTAAA
74309787 TATATTAAA
1 TATATTAAA
74309796 TATAT
1 TATAT
74309801 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATTAAA
Found at i:74310868 original size:23 final size:23
Alignment explanation
Indices: 74310825--74310869 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
74310815 AAACAAAATT
* *
74310825 AAAAAAAAAACTTGTTTATTTTC
1 AAAAAAAAAACTTATTAATTTTC
74310848 AAAAAAAAATA-TTATTAATTTT
1 AAAAAAAAA-ACTTATTAATTTT
74310870 TGTATTATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
AAAAAAAAAACTTATTAATTTTC
Found at i:74329734 original size:5 final size:5
Alignment explanation
Indices: 74329724--74329749 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
74329714 AAATATATAC
74329724 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
74329750 AACCTGTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:74331425 original size:21 final size:21
Alignment explanation
Indices: 74331401--74331466 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
74331391 GTGGAGGATC
74331401 TTGCAGAAACTGTGGGCTTAG
1 TTGCAGAAACTGTGGGCTTAG
* * *
74331422 TTGCAGGAGA-TG-GAGCCTTGG
1 TTGCA-GAAACTGTG-GGCTTAG
* *
74331443 CTGCAGAAACTGTGGGTTTAG
1 TTGCAGAAACTGTGGGCTTAG
74331464 TTG
1 TTG
74331467 ACGAAGTTAA
Statistics
Matches: 32, Mismatches: 9, Indels: 8
0.65 0.18 0.16
Matches are distributed among these distances:
20 4 0.12
21 24 0.75
22 4 0.12
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (21 bp):
TTGCAGAAACTGTGGGCTTAG
Found at i:74333629 original size:5 final size:5
Alignment explanation
Indices: 74333619--74333648 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
74333609 AAACAATACC
74333619 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
74333649 GGAATAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TTAAA
Found at i:74335123 original size:36 final size:37
Alignment explanation
Indices: 74335083--74335176 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 37
74335073 GTTTTCTAGC
* *
74335083 ATAGTGGTTTGTCATGGGATA-TCTTTAGTTTTAAGG
1 ATAGTGGTTTGTCATGGGATACTCTCTAGTTTTAAAG
* *
74335119 ATAGTGGCTTGTTATGGGATACGTCTCTAGTTTTAAAG
1 ATAGTGGTTTGTCATGGGATAC-TCTCTAGTTTTAAAG
* * *
74335157 ATAATAGTTTGTCATAGGAT
1 ATAGTGGTTTGTCATGGGAT
74335177 GTAAGCCTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
36 19 0.40
38 28 0.60
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (37 bp):
ATAGTGGTTTGTCATGGGATACTCTCTAGTTTTAAAG
Found at i:74336170 original size:46 final size:46
Alignment explanation
Indices: 74336103--74336197 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
74336093 ATTGTTCATT
74336103 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
1 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
74336149 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
1 AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
74336195 AAC
1 AAC
74336198 ATGTATATTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (46 bp):
AACTTGGAATCTAATATAAGTTCTTTCAAAATCTTATACTTAGAAA
Found at i:74336457 original size:20 final size:20
Alignment explanation
Indices: 74336432--74336472 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
74336422 AATCAACTAA
74336432 TTCTAATGCATTCAAACATG
1 TTCTAATGCATTCAAACATG
74336452 TTCTAATGCATTCAAACATG
1 TTCTAATGCATTCAAACATG
74336472 T
1 T
74336473 GCTAGTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TTCTAATGCATTCAAACATG
Found at i:74340068 original size:26 final size:26
Alignment explanation
Indices: 74340036--74340085 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
74340026 CATATACTGA
74340036 TACTGGCAGCTTTGCTGCGATATTAT
1 TACTGGCAGCTTTGCTGCGATATTAT
*
74340062 TACTGGCAGCTTTGTTGCGATATT
1 TACTGGCAGCTTTGCTGCGATATT
74340086 GATGTGTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATATTAT
Found at i:74358217 original size:46 final size:47
Alignment explanation
Indices: 74357987--74358303 Score: 192
Period size: 46 Copynumber: 6.7 Consensus size: 47
74357977 TATAATGCCA
* * *
74357987 ATGCTATGCCCCAGACATGGTCTTACACTGGC-T-CATCCATC-AAGTCG
1 ATGC-ATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAGGCCG
* **
74358034 ATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCAAAATCGAGGCCG
1 ATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGAGGCCG
* * * * * * *
74358083 ACGCCATGTACTAGACATGGTCTTACACTAGCTCTCACATATCCG-TGCTG
1 ATG-CATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGAGGCCG
* * * *
74358133 ATGCCATGTCCTATG-CATGGTCTTACATTGAC--ATATCTCGTA-GCCG
1 ATG-CATGTCCCA-GACATGGTCTTACACTGGCTTACATCTCG-AGGCCG
74358179 ATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCG
1 ATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCG
* * * * *
74358225 ATGAATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGCC-
1 ATGCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCCG
*
74358270 ATTGCGATGTCCCAGACATGGTCTTACCCTGGCT
1 A-TGC-ATGTCCCAGACATGGTCTTACACTGGCT
74358304 CACAAACAAC
Statistics
Matches: 216, Mismatches: 34, Indels: 39
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.06
45 15 0.07
46 61 0.28
47 43 0.20
48 15 0.07
49 32 0.15
50 32 0.15
51 5 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCG
Found at i:74359827 original size:27 final size:27
Alignment explanation
Indices: 74359772--74359830 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
74359762 TTTATAAAAA
* * *
74359772 TTAAAATTTTAATTTTAGAGTGTATAT
1 TTAATATTTTAATTTTAGAATGTACAT
*
74359799 TTAATATTTTAATTTTAGAATGTCCAT
1 TTAATATTTTAATTTTAGAATGTACAT
74359826 TTAAT
1 TTAAT
74359831 TTTATTTAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (27 bp):
TTAATATTTTAATTTTAGAATGTACAT
Found at i:74360929 original size:22 final size:21
Alignment explanation
Indices: 74360910--74360949 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74360900 CCCATGTGGT
74360910 CCAAGGGACACGCCTGTGTGA
1 CCAAGGGACACGCCTGTGTGA
**
74360931 CCCTGGGACACGCCTGTGT
1 CCAAGGGACACGCCTGTGT
74360950 TGAAGGCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (21 bp):
CCAAGGGACACGCCTGTGTGA
Found at i:74373205 original size:46 final size:43
Alignment explanation
Indices: 74373137--74373267 Score: 129
Period size: 46 Copynumber: 2.9 Consensus size: 43
74373127 CTCCTAAACA
74373137 ATAATGCTCCTAAGTACAAGCTTAAATTGTTCATCCAAAATAAATG
1 ATAATGCTCCTAA--ACAAGCTTAAATTGTTCATCCAAAAT-AATG
* *
74373183 ATAATGCTCCTAAACATGAGCTTAAACTGTT-AGCACAAAATAATG
1 ATAATGCTCCTAAACA--AGCTTAAATTGTTCATC-CAAAATAATG
* * * *
74373228 ATCATACTCCTCAGCACAAGTTTAAATTGTTCATCCAAAA
1 ATAATGCTCCT-A-AACAAGCTTAAATTGTTCATCCAAAA
74373268 ACATATGCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
44 3 0.04
45 31 0.44
46 34 0.48
47 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (43 bp):
ATAATGCTCCTAAACAAGCTTAAATTGTTCATCCAAAATAATG
Found at i:74373267 original size:45 final size:46
Alignment explanation
Indices: 74373137--74373267 Score: 140
Period size: 45 Copynumber: 2.9 Consensus size: 46
74373127 CTCCTAAACA
* *
74373137 ATAATGCTCCTAAGTACAAGCTTAAATTGTTCATCCAAAATAAATG
1 ATAATACTCCTAAGCACAAGCTTAAATTGTTCATCCAAAATAAATG
* * ** * *
74373183 ATAATGCTCCTAAACATGAGCTTAAACTGTT-AGCACAAAAT-AATG
1 ATAATACTCCTAAGCACAAGCTTAAATTGTTCATC-CAAAATAAATG
* * *
74373228 ATCATACTCCTCAGCACAAGTTTAAATTGTTCATCCAAAA
1 ATAATACTCCTAAGCACAAGCTTAAATTGTTCATCCAAAA
74373268 ACATATGCTC
Statistics
Matches: 68, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
45 34 0.50
46 34 0.50
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (46 bp):
ATAATACTCCTAAGCACAAGCTTAAATTGTTCATCCAAAATAAATG
Found at i:74375326 original size:16 final size:15
Alignment explanation
Indices: 74375302--74375331 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
74375292 AACTATTTCA
74375302 TTACAAATTTCACTC
1 TTACAAATTTCACTC
74375317 TTACATAATTTCACT
1 TTACA-AATTTCACT
74375332 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:74375656 original size:50 final size:50
Alignment explanation
Indices: 74375543--74375818 Score: 297
Period size: 50 Copynumber: 5.5 Consensus size: 50
74375533 GTGGTATGCA
* * *
74375543 TAGTAGCCTGCACTTAATACTACACATGCGACC-AACAAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GGTACACG
* ** *
74375592 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATAAACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
* *** * * *
74375642 TAGTAGCCTGCACTTAGTACTACACATGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATCTGGTACACG
* *
74375693 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
* *** *
74375743 TAGTATCCTGCACTTAGTACTACACATGTGACCTAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACCATCTGGTACACG
*
74375794 TAGTAGCCTGCACATAGTACTACAC
1 TAGTAGCCTGCACTTAGTACTACAC
74375819 GTGTTCTCAC
Statistics
Matches: 187, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
49 31 0.17
50 83 0.44
51 72 0.39
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
Found at i:74375716 original size:101 final size:101
Alignment explanation
Indices: 74375592--74375773 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
74375582 TCGGTACACG
*
74375592 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATAAACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATAAACGTAGTAGCCTGCACTT
74375657 AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
* * ** * *
74375693 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTATCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATAAACGTAGTAGCCTGCACTT
74375758 AGTACTACACATGTGA
66 AGTACTACACATGTGA
74375774 CCTAAACCAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATAAACGTAGTAGCCTGCACTT
AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
Found at i:74375796 original size:101 final size:101
Alignment explanation
Indices: 74375543--74375818 Score: 290
Period size: 101 Copynumber: 2.8 Consensus size: 101
74375533 GTGGTATGCA
* * * * * *
74375543 TAGTAGCCTGCACTTAATACTACACATGCGAC--CAACAATTCGG-TACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTGAAACCA-TCGGAAACACATAGTAGCCTGCAC
*
74375605 TTAGTACTACACACGTGACCTAACCATCTAATAAACG
65 TTAGTACTACACACGCGACCTAACCATCTAATAAACG
* **** ** *
74375642 TAGTAGCCTGCACTTAGTACTACACATGTGATTGAAGTTGTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTGAAACCATCGGAAACACATAGTAGCCTGCACT
* * ** *
74375707 TAGTACTACACATGCGACCTAACTATCTGGTACACG
66 TAGTACTACACACGCGACCTAACCATCTAATAAACG
* **
74375743 TAGTATCCTGCACTTAGTACTACACATGTGACCT-AAACCATCTTAAACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CTGAAACCATCGGAAACACATAGTAGCCTGCAC
*
74375807 ATAGTACTACAC
65 TTAGTACTACAC
74375819 GTGTTCTCAC
Statistics
Matches: 145, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
99 29 0.20
100 4 0.03
101 111 0.77
102 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACTGAAACCATCGGAAACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACCATCTAATAAACG
Found at i:74377448 original size:43 final size:43
Alignment explanation
Indices: 74377377--74377520 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
74377367 GAAACCAGTT
** * ** *
74377377 TTCAAGATCAAGCCTCGACGACTATTGAAGCGAAC-ATCATTGA
1 TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTA-CATTGA
* * *
74377420 TTCAAGATCAAATCTCGATGACCCTTGAAGTAGACTAAATTGA
1 TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTACATTGA
* *
74377463 TTCAAGATCAAGTCTCGGTGACCCTTGAAGCAAACTACATT-A
1 TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTACATTGA
*
74377505 TCCTAAGATCAAATCT
1 TTC-AAGATCAAATCT
74377521 TGATAAACCT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
42 3 0.04
43 79 0.95
44 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.26
Consensus pattern (43 bp):
TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTACATTGA
Found at i:74379294 original size:9 final size:9
Alignment explanation
Indices: 74379276--74379316 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
74379266 ATAAGTATAA
74379276 AATTAACCG
1 AATTAACCG
*
74379285 AATTACCCG
1 AATTAACCG
*
74379294 AATTAACCA
1 AATTAACCG
74379303 AATTAACCG
1 AATTAACCG
74379312 AATTA
1 AATTA
74379317 TTTGTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:74379351 original size:5 final size:6
Alignment explanation
Indices: 74379336--74379370 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
74379326 AATTATATGT
74379336 TTTTTA TTTTTA TTTTTA GTTTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTT
74379371 ATCAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 21 0.78
8 6 0.22
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:74380585 original size:31 final size:30
Alignment explanation
Indices: 74380537--74380595 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
74380527 TTATATATCG
74380537 TTATATTAAATTATTTAAATATAATTTATTA
1 TTATATTAAATTATTTAAA-ATAATTTATTA
* *
74380568 TTATATTTAAGTT-TTTAAAATATTTTAT
1 TTATA-TTAAATTATTTAAAATAATTTAT
74380596 CAATAATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 11 0.44
32 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (30 bp):
TTATATTAAATTATTTAAAATAATTTATTA
Found at i:74387119 original size:13 final size:13
Alignment explanation
Indices: 74387101--74387125 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74387091 AATGAAGCAA
74387101 GACACGGCCGTGC
1 GACACGGCCGTGC
74387114 GACACGGCCGTG
1 GACACGGCCGTG
74387126 TGCACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:74398820 original size:40 final size:40
Alignment explanation
Indices: 74398722--74399024 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
74398712 TCCTCGTTCA
* * * * *
74398722 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
74398761 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
74398801 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
74398841 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
74398881 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
74398921 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
74398961 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
74399001 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74399025 CAACATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:74407524 original size:4 final size:4
Alignment explanation
Indices: 74407515--74407541 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
74407505 CAAACACAAA
74407515 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
74407542 AACCTTGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:74407587 original size:13 final size:13
Alignment explanation
Indices: 74407571--74407630 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
74407561 ACCACCCTTG
74407571 TTGGCCACCCACC
1 TTGGCCACCCACC
*
74407584 TTGGCCACCTA-C
1 TTGGCCACCCACC
*** ***
74407596 TCCACCACCCTTG
1 TTGGCCACCCACC
74407609 TTGGCCACCCACC
1 TTGGCCACCCACC
74407622 TTGGCCACC
1 TTGGCCACC
74407631 TAAACCACCC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
12 7 0.21
13 26 0.79
ACGTcount: A:0.15, C:0.50, G:0.15, T:0.20
Consensus pattern (13 bp):
TTGGCCACCCACC
Found at i:74407639 original size:38 final size:38
Alignment explanation
Indices: 74407543--74407632 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
74407533 ATAAATAAAA
74407543 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
1 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
74407581 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
1 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
74407619 ACCTTGGCCACCTA
1 ACCTTGGCCACCTA
74407633 AACCACCCCA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.17, C:0.49, G:0.13, T:0.21
Consensus pattern (38 bp):
ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
Found at i:74407741 original size:27 final size:27
Alignment explanation
Indices: 74407711--74407772 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
74407701 TTTTTGGGGG
*
74407711 TGTTTTTTTTGTTTTTTGGAGGAGGTT
1 TGTTTTTTTTGTTTTTTGGAGGAGGGT
74407738 TGTTTTTTTTGTTTTTTGGAGGAGGGT
1 TGTTTTTTTTGTTTTTTGGAGGAGGGT
74407765 TGTTTTTT
1 TGTTTTTT
74407773 GTTTTGGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.06, C:0.00, G:0.29, T:0.65
Consensus pattern (27 bp):
TGTTTTTTTTGTTTTTTGGAGGAGGGT
Found at i:74408108 original size:9 final size:9
Alignment explanation
Indices: 74408083--74408161 Score: 54
Period size: 9 Copynumber: 8.6 Consensus size: 9
74408073 GAGCTTTGTT
*
74408083 TTATTTTTT
1 TTATTTTTA
74408092 TTA-TTTTA
1 TTATTTTTA
74408100 TTATTTTTA
1 TTATTTTTA
*
74408109 CTATTATTTA
1 TTATT-TTTA
*
74408119 -TATTATTA
1 TTATTTTTA
*
74408127 TTATTTCTCA
1 TTATTT-TTA
*
74408137 TGTATATATTA
1 T-TAT-TTTTA
*
74408148 TTATTTATA
1 TTATTTTTA
74408157 TTATT
1 TTATT
74408162 ATATTATATA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
8 10 0.18
9 28 0.51
10 10 0.18
11 6 0.11
12 1 0.02
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (9 bp):
TTATTTTTA
Found at i:74408113 original size:17 final size:14
Alignment explanation
Indices: 74408081--74408132 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
74408071 GAGAGCTTTG
74408081 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
*
74408095 TTTTATTATTTTTA
1 TTTTATTTTTTTTA
* * *
74408109 CTATTATTTATATTA
1 -TTTTATTTTTTTTA
74408124 TTATTATTT
1 TT-TTATTT
74408133 CTCATGTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 14 0.47
15 16 0.53
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTATTTTTTTTA
Found at i:74408158 original size:12 final size:12
Alignment explanation
Indices: 74408091--74408170 Score: 74
Period size: 12 Copynumber: 6.6 Consensus size: 12
74408081 TTTTATTTTT
*
74408091 TTTATTTTATTA
1 TTTATATTATTA
* *
74408103 TTTTTACTATTA
1 TTTATATTATTA
74408115 TTTATATTATTA
1 TTTATATTATTA
* *
74408127 -TTAT-TTCTCA
1 TTTATATTATTA
74408137 TGTATATATTATTA
1 T-T-TATATTATTA
74408151 TTTATATTATTA
1 TTTATATTATTA
74408163 TATTATAT
1 T-TTATAT
74408171 ATGCCCTCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 4 0.07
12 31 0.57
13 10 0.19
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:74408495 original size:3 final size:3
Alignment explanation
Indices: 74408487--74408561 Score: 114
Period size: 3 Copynumber: 25.0 Consensus size: 3
74408477 TGTATTTCTA
74408487 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
74408535 TAT TGT TGT TGT TAT TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
74408562 CATTGTTTGT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:74408576 original size:24 final size:27
Alignment explanation
Indices: 74408492--74408586 Score: 93
Period size: 27 Copynumber: 3.4 Consensus size: 27
74408482 TTCTATATTA
* * * * *
74408492 TTATTATTATTATTATTATTATTATTA
1 TTATTATTATTTTTATCATTGTTGTTG
* *
74408519 TTATTATTATTATTATTATTGTTGTTG
1 TTATTATTATTTTTATCATTGTTGTTG
74408546 TTATTATTATTTTTATCATTGTT-TGTG
1 TTATTATTATTTTTATCATTGTTGT-TG
74408573 TTATTTATTTATTT
1 TTA-TTA-TTATTT
74408587 ACGTATATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.02
27 50 0.83
28 3 0.05
29 6 0.10
ACGTcount: A:0.24, C:0.01, G:0.06, T:0.68
Consensus pattern (27 bp):
TTATTATTATTTTTATCATTGTTGTTG
Found at i:74410127 original size:21 final size:21
Alignment explanation
Indices: 74410090--74410132 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
74410080 TGCACATAGG
*
74410090 CGTGTGAGGTAGTCACACAGC
1 CGTGTGAGGTAGCCACACAGC
*
74410111 CGTGTG-GGATAGCCACATAGC
1 CGTGTGAGG-TAGCCACACAGC
74410132 C
1 C
74410133 ATGTTTGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.23, C:0.26, G:0.33, T:0.19
Consensus pattern (21 bp):
CGTGTGAGGTAGCCACACAGC
Found at i:74420051 original size:18 final size:18
Alignment explanation
Indices: 74420030--74420065 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74420020 TTAAAAGTGT
* *
74420030 TTATGAGTATAAATATAA
1 TTATAAGTACAAATATAA
74420048 TTATAAGTACAAATATAA
1 TTATAAGTACAAATATAA
74420066 ATCATAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (18 bp):
TTATAAGTACAAATATAA
Found at i:74422163 original size:29 final size:30
Alignment explanation
Indices: 74422097--74422163 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
74422087 TGTTAATTTA
74422097 ATTTATTTAATTAAAAATCTATTTAAAAGGAT
1 ATTTATTTAATTAAAAATC--TTTAAAAGGAT
*
74422129 ATTTTATTTAAATTAAAAA-C-TTAAAGGGAT
1 A-TTTATTT-AATTAAAAATCTTTAAAAGGAT
74422159 ATTTA
1 ATTTA
74422164 ATCTCAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 4 0.12
30 10 0.31
32 1 0.03
33 8 0.25
34 9 0.28
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.43
Consensus pattern (30 bp):
ATTTATTTAATTAAAAATCTTTAAAAGGAT
Found at i:74424500 original size:37 final size:36
Alignment explanation
Indices: 74424425--74424500 Score: 82
Period size: 37 Copynumber: 2.1 Consensus size: 36
74424415 TTTTAATTTG
* ** *
74424425 ATAATGTTTTATAGTTTTTAACTTTTTATATTTCAT
1 ATAATGTTTTATAGTTTTTAACTTTATATAACTAAT
*
74424461 ATAATGTTTTTATAATTTTTTAA-TTTATATAACTAAT
1 ATAATG-TTTTAT-AGTTTTTAACTTTATATAACTAAT
74424498 ATA
1 ATA
74424501 TTATATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
36 6 0.18
37 19 0.58
38 8 0.24
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (36 bp):
ATAATGTTTTATAGTTTTTAACTTTATATAACTAAT
Found at i:74429366 original size:22 final size:23
Alignment explanation
Indices: 74429338--74429390 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
74429328 CCAAAACCTG
74429338 TTTAAAGAC-ATGTACACCCCTC
1 TTTAAAGACTATGTACACCCCTC
* *
74429360 TTTAAAGCCTTATGTATACCCCTC
1 TTTAAAGAC-TATGTACACCCCTC
*
74429384 TCTAAAG
1 TTTAAAG
74429391 CTTTCCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
24 18 0.69
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (23 bp):
TTTAAAGACTATGTACACCCCTC
Done.