Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 234 of 318
Found at i:74432595 original size:23 final size:22
Alignment explanation
Indices: 74432565--74432609 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
74432555 CTAAAAAAAC
*
74432565 CAAAACTTGCTAGAATAGCAGA
1 CAAAACTTGCTAGAACAGCAGA
*
74432587 CAAATACTTGCTAGCACAGCAGA
1 CAAA-ACTTGCTAGAACAGCAGA
74432610 TTAACTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (22 bp):
CAAAACTTGCTAGAACAGCAGA
Found at i:74436539 original size:46 final size:46
Alignment explanation
Indices: 74436220--74436538 Score: 460
Period size: 46 Copynumber: 6.9 Consensus size: 46
74436210 TTTGACATGA
* * ** * *
74436220 TGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
74436266 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
74436312 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
74436358 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
74436404 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
74436450 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
74436496 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
74436539 GAGAGCACAC
Statistics
Matches: 256, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 252 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:74438687 original size:11 final size:11
Alignment explanation
Indices: 74438671--74438729 Score: 73
Period size: 11 Copynumber: 5.2 Consensus size: 11
74438661 CTTTATATAC
74438671 TAATAAAATAA
1 TAATAAAATAA
*
74438682 TAATAAAGTAA
1 TAATAAAATAA
74438693 TAATAAAATATA
1 TAATAAAATA-A
* *
74438705 TTATTAAAATAT
1 -TAATAAAATAA
74438717 TAATAAAATAA
1 TAATAAAATAA
74438728 TA
1 TA
74438730 TTTATCTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 30 0.75
12 1 0.03
13 9 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:74439277 original size:30 final size:30
Alignment explanation
Indices: 74439243--74439304 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
74439233 TTTGTAAGTA
*
74439243 AAACAAGTGAGTCACTTGGTTTTACAAACT
1 AAACAAGTGAGTCACTTGGTCTTACAAACT
74439273 AAACAAGTGAGTCACTTGGTCTTACAAACT
1 AAACAAGTGAGTCACTTGGTCTTACAAACT
74439303 AA
1 AA
74439305 GTTTTCAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (30 bp):
AAACAAGTGAGTCACTTGGTCTTACAAACT
Found at i:74443030 original size:20 final size:20
Alignment explanation
Indices: 74443007--74443060 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
74442997 TTGTTATATT
*
74443007 TTATAGTTTT-TTTGGATTAA
1 TTATA-TTTTATTTGAATTAA
74443027 TTATATTTTATTTGAATTATA
1 TTATATTTTATTTGAATTA-A
*
74443048 TTTTTATTTTATT
1 -TTATATTTTATT
74443061 ATTTTTAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 13 0.45
21 1 0.03
22 11 0.38
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (20 bp):
TTATATTTTATTTGAATTAA
Found at i:74443062 original size:16 final size:17
Alignment explanation
Indices: 74443025--74443056 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74443015 TTTTTGGATT
74443025 AATTATA-TTTTATTTG
1 AATTATATTTTTATTTG
74443041 AATTATATTTTTATTT
1 AATTATATTTTTATTT
74443057 TATTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
AATTATATTTTTATTTG
Found at i:74451690 original size:17 final size:19
Alignment explanation
Indices: 74451654--74451710 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
74451644 AATTATAAAT
* *
74451654 TTAAAATATAAATATTTAA
1 TTAAAAGATAAATATATAA
74451673 TTAAAA-AT-AATATATAA
1 TTAAAAGATAAATATATAA
74451690 -TAAAAGATAAAATATATAA
1 TTAAAAGAT-AAATATATAA
74451709 TT
1 TT
74451711 TAAGTTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 5 0.15
17 10 0.30
18 2 0.06
19 15 0.45
20 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TTAAAAGATAAATATATAA
Found at i:74457753 original size:28 final size:28
Alignment explanation
Indices: 74457708--74457766 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
74457698 AACTTCAACA
*
74457708 TTTTCTCTTTCATCTTCTCTGCCATCTC
1 TTTTCTCTTTCATCTTCTCTGCCATATC
* * *
74457736 TTTTCTCTTTCGTTTTCTCTGCTATATC
1 TTTTCTCTTTCATCTTCTCTGCCATATC
74457764 TTT
1 TTT
74457767 CATTTTCCCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.07, C:0.29, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTTCTCTTTCATCTTCTCTGCCATATC
Found at i:74458349 original size:14 final size:16
Alignment explanation
Indices: 74458318--74458349 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74458308 TGGAAGAGAA
74458318 GATAAAATTGTACAAG
1 GATAAAATTGTACAAG
74458334 GATAAAA-TGT-CAAG
1 GATAAAATTGTACAAG
74458348 GA
1 GA
74458350 ACAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
GATAAAATTGTACAAG
Found at i:74458655 original size:45 final size:45
Alignment explanation
Indices: 74458606--74458692 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
74458596 AATATAAATT
*
74458606 GTCCATCAAAATACAACCAT-TAGAATGATTCAACAAAATAAATAC
1 GTCCATCAAAATACAACCATCTA-AATGATCCAACAAAATAAATAC
* *
74458651 GTCCATCAAAATACATCTATCTAAATGATCCAACAAAATAAA
1 GTCCATCAAAATACAACCATCTAAATGATCCAACAAAATAAA
74458693 ACCATCCATC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 36 0.95
46 2 0.05
ACGTcount: A:0.51, C:0.21, G:0.06, T:0.23
Consensus pattern (45 bp):
GTCCATCAAAATACAACCATCTAAATGATCCAACAAAATAAATAC
Found at i:74458701 original size:45 final size:45
Alignment explanation
Indices: 74458607--74458702 Score: 124
Period size: 45 Copynumber: 2.1 Consensus size: 45
74458597 ATATAAATTG
* *
74458607 TCCATCAAAATACAACCATTAGAATGATTCAACAAAATAAATACG
1 TCCATCAAAATACAACCATTAGAATGATCCAACAAAATAAATACA
* *
74458652 TCCATCAAAATACATCTATCTA-AATGATCCAACAAAATAAA-ACCA
1 TCCATCAAAATACAACCAT-TAGAATGATCCAACAAAATAAATA-CA
74458697 TCCATC
1 TCCATC
74458703 TTATGATAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
44 1 0.02
45 42 0.93
46 2 0.04
ACGTcount: A:0.49, C:0.24, G:0.04, T:0.23
Consensus pattern (45 bp):
TCCATCAAAATACAACCATTAGAATGATCCAACAAAATAAATACA
Found at i:74463204 original size:48 final size:47
Alignment explanation
Indices: 74463143--74463356 Score: 209
Period size: 48 Copynumber: 4.5 Consensus size: 47
74463133 TATGAGAGTC
* *
74463143 AGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAGATATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATA-AAGCT
* * * * * *
74463191 AATGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATAAAGCT
* * *
74463237 AGTGTAAGACATGTCTGGAACATGCATAGGCCTCGAGAGATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATA-AAGCT
* * * * * *
74463285 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCT--AGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGA-GAGATAAAGCT
74463332 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
74463357 ACGTTGGCAT
Statistics
Matches: 136, Mismatches: 25, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
46 37 0.27
47 16 0.12
48 71 0.52
49 9 0.07
50 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATAAAGCT
Found at i:74463241 original size:94 final size:95
Alignment explanation
Indices: 74463143--74463314 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 95
74463133 TATGAGAGTC
* *
74463143 AGTGTAAGACATGTCTAGG-ACATGCATCGACCTCGAGAGATATAAGCCAATGTAAGACATGTCT
1 AGTGTAAGACATGTCT-GGAACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCT
74463207 GGGACAT-GCATCGGCATTGAGACAAGAGCT
65 GGGACATGGCATCGGCATTGAGACAAGAGCT
* * * *
74463237 AGTGTAAGACATGTCTGGAACATGCATAGGCCTCGAGAGATACAAGCTAGTGTAAGACCTGTCTG
1 AGTGTAAGACATGTCTGGAACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
74463302 GGACATGGCATCG
66 GGACATGGCATCG
74463315 ACTTTGATGT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
93 2 0.03
94 62 0.89
95 6 0.09
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGAACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
GGACATGGCATCGGCATTGAGACAAGAGCT
Found at i:74463254 original size:46 final size:48
Alignment explanation
Indices: 74463143--74463314 Score: 213
Period size: 48 Copynumber: 3.6 Consensus size: 48
74463133 TATGAGAGTC
* * * *
74463143 AGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAGATATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
* * * * *
74463191 AATGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA-A-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
* *
74463237 AGTGTAAGACATGTCTGGAACATGCATAGGCCTCGAGAGATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
*
74463285 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
74463315 ACTTTGATGT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 37 0.36
47 2 0.02
48 59 0.57
49 5 0.05
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
Found at i:74470975 original size:13 final size:13
Alignment explanation
Indices: 74470936--74470982 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
74470926 TGGACACTGC
74470936 ACATACATAATAT
1 ACATACATAATAT
74470949 A-A-ACTATAATAT
1 ACATAC-ATAATAT
*
74470961 ACATACATGATAT
1 ACATACATAATAT
74470974 ACATACATA
1 ACATACATA
74470983 TTTTAAACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
13 16 0.55
14 2 0.07
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (13 bp):
ACATACATAATAT
Found at i:74471021 original size:29 final size:30
Alignment explanation
Indices: 74470986--74471042 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
74470976 ATACATATTT
**
74470986 TAAACAGTGCTAAAC-ATAAGATACATACA
1 TAAACAGTAATAAACAATAAGATACATACA
*
74471015 TAAACAGTAATAAACAATAATATACATA
1 TAAACAGTAATAAACAATAAGATACATA
74471043 AAAGTAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAACAGTAATAAACAATAAGATACATACA
Found at i:74471067 original size:27 final size:26
Alignment explanation
Indices: 74471008--74471122 Score: 80
Period size: 26 Copynumber: 4.4 Consensus size: 26
74470998 AACATAAGAT
74471008 ACATACATAAACAGTAATAAACAATA
1 ACATACATAAACAGTAATAAACAATA
* * *
74471034 ATATACATAAA-AGTAGTATACCATATA
1 ACATACATAAACAGTAATA-AACA-ATA
74471061 ACATACATACATACA-TACATACATAC-AT-
1 ACATACATA-A-ACAGTA-ATA-A-ACAATA
* *
74471089 ACATACAT-AATAGTAATATAC-ATA
1 ACATACATAAACAGTAATAAACAATA
74471113 ACATACATAA
1 ACATACATAA
74471123 TATACATACA
Statistics
Matches: 70, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
23 4 0.06
24 8 0.11
25 12 0.17
26 16 0.23
27 11 0.16
28 9 0.13
29 5 0.07
30 4 0.06
31 1 0.01
ACGTcount: A:0.55, C:0.17, G:0.03, T:0.25
Consensus pattern (26 bp):
ACATACATAAACAGTAATAAACAATA
Found at i:74471070 original size:4 final size:4
Alignment explanation
Indices: 74471061--74471235 Score: 90
Period size: 4 Copynumber: 45.2 Consensus size: 4
74471051 ATACCATATA
* *
74471061 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A-AT A-GT AATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -ACAT
*
74471108 ACAT AACAT ACAT AATAT ACAT ACATT A-A- ACAT AACAT ACAT ACAT
1 ACAT -ACAT ACAT -ACAT ACAT ACA-T ACAT ACAT -ACAT ACAT ACAT
* * * *
74471154 ATAT A-A- ACAGT A-AT AAAT ATA- ACAT ACAT A-AT A-A- AAAT ACAT
1 ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
74471196 A-AG A-AT A-AT ATACC ACAT AACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACA-T ACAT -ACAT ACAT ACAT ACAT ACAT A
74471236 ATAATAATAT
Statistics
Matches: 139, Mismatches: 14, Indels: 36
0.74 0.07 0.19
Matches are distributed among these distances:
2 3 0.02
3 23 0.17
4 92 0.66
5 21 0.15
ACGTcount: A:0.55, C:0.17, G:0.02, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:74471087 original size:77 final size:75
Alignment explanation
Indices: 74471006--74471246 Score: 207
Period size: 77 Copynumber: 3.2 Consensus size: 75
74470996 TAAACATAAG
74471006 ATACATACATA-AACAGTAATAAACAATAATATACATAAAAGTAGTATACCATATAACATACATA
1 ATACATACATATAACAGTAATAAACAATAA-ATACATAAAA-TA-TATACCATATAACATACATA
74471070 CATACATACATAC
63 CATACATACATAC
* * * *
74471083 ATACATACATACATAATAGTAATATAC-ATAACATACATAATATACATA-CAT-TAAACATAACA
1 ATACATACAT--ATAACAGTAATAAACAATAA-ATACATAAAATATATACCATAT-AACAT-ACA
*
74471145 TACATACATATATAAAC
61 TACATACATACAT--AC
* * *
74471162 AGTA-ATAAATATAACA-TACAT-AATAA-AAATACATAAGAATAATATACCACATAACATACAT
1 A-TACATACATATAACAGTA-ATAAACAATAAATACATAA-AAT-ATATACCATATAACATACAT
74471223 ACATACATACATA-
62 ACATACATACATAC
74471236 ATA-ATA-ATATA
1 ATACATACATATA
74471247 CATAACATGC
Statistics
Matches: 136, Mismatches: 14, Indels: 33
0.74 0.08 0.18
Matches are distributed among these distances:
72 5 0.04
73 5 0.04
74 1 0.01
75 10 0.07
76 15 0.11
77 55 0.40
78 9 0.07
79 23 0.17
80 13 0.10
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.26
Consensus pattern (75 bp):
ATACATACATATAACAGTAATAAACAATAAATACATAAAATATATACCATATAACATACATACAT
ACATACATAC
Found at i:74471153 original size:138 final size:135
Alignment explanation
Indices: 74470996--74471271 Score: 337
Period size: 138 Copynumber: 2.0 Consensus size: 135
74470986 TAAACAGTGC
* * *
74470996 TAAACATAAGATACATAC-ATAAACAGTAATAAACAATAATATACATAA-AAGTAGTATACCATA
1 TAAACATAACATACATACAATAAACAGTAATAAA-AATAACATACATAATAA--A-AATA-CATA
* *
74471059 TA-ACATACATACA-TACAT-ACATACATACATACATACATAATAGTAATATACATAACATACAT
61 -AGA-ATA-ATACACCACATAACATACATACATACATACATAATAATAATATACATAACATACAT
74471121 AATATACATACAT
123 AATATACATACAT
*
74471134 TAAACATAACATACATACATATATAAACAGTAATAAATATAACATACATAATAAAAATACATAAG
1 TAAACATAACATACATAC--A-ATAAACAGTAATAAAAATAACATACATAATAAAAATACATAAG
* * *
74471199 AATAATATACCACATAACATACATACATACATACATAATAATAATATACATAACATGCATAATGT
63 AATAATACACCACATAACATACATACATACATACATAATAATAATATACATAACATACATAATAT
74471264 ACATACAT
128 ACATACAT
74471272 AACAGAATAC
Statistics
Matches: 121, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
136 4 0.03
137 8 0.07
138 76 0.63
139 3 0.02
140 1 0.01
141 12 0.10
142 17 0.14
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (135 bp):
TAAACATAACATACATACAATAAACAGTAATAAAAATAACATACATAATAAAAATACATAAGAAT
AATACACCACATAACATACATACATACATACATAATAATAATATACATAACATACATAATATACA
TACAT
Found at i:74471181 original size:53 final size:53
Alignment explanation
Indices: 74471058--74471251 Score: 135
Period size: 53 Copynumber: 3.8 Consensus size: 53
74471048 AGTATACCAT
* *
74471058 ATAACATACAT-ACATACATACATACATACATACATACATAATAGTAATATAC
1 ATAACAAACATAACATACATACATACATACATACATACATAATAGTAATAAAC
* *
74471110 ATAACATACATAATATACATACATTA-A-ACATAACATACATACATA-T-ATAAAC
1 ATAACAAACATAACATACATACA-TACATACAT-ACATACATA-ATAGTAATAAAC
* * * * * *
74471162 AGTAATAAATATAACATACATA-ATA-A-AAATACATA-AGAATAAT-ATACCAC
1 A-TAACAAACATAACATACATACATACATACATACATACATAATAGTAATA-AAC
* *
74471212 ATAACATACAT-ACATACATACATA-ATA-ATAATATACATAA
1 ATAACAAACATAACATACATACATACATACAT-ACATACATAA
74471252 CATGCATAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
48 12 0.10
49 19 0.16
50 13 0.11
51 9 0.08
52 22 0.19
53 37 0.32
54 5 0.04
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (53 bp):
ATAACAAACATAACATACATACATACATACATACATACATAATAGTAATAAAC
Found at i:74471194 original size:62 final size:60
Alignment explanation
Indices: 74471077--74471280 Score: 166
Period size: 62 Copynumber: 3.5 Consensus size: 60
74471067 ATACATACAT
* * * *
74471077 ACATACATACATACATACATAATAGTAATATACATAACATACATAATATACATACATTAA
1 ACATACATACATACATACATAACAGTAATAAACATAACATACATAATAAAAATACATTAA
* *
74471137 ACATAACATACATACATATATAAACAGTAATAAATATAACATACATAATAAAAATACA-TAA
1 ACAT-ACATACATACATACAT-AACAGTAATAAACATAACATACATAATAAAAATACATTAA
*
74471198 GA-ATA-AT--ATAC-CACATAACA-TACAT--ACAT-ACATACATAATAATAATATACA-T-A
1 -ACATACATACATACATACATAACAGTA-ATAAACATAACATACATAATAA-AA-ATACATTAA
*
74471251 ACATGCATA-ATGTACATACATAACAG-AATA
1 ACATACATACA--TACATACATAACAGTAATA
74471281 CATAAAGATA
Statistics
Matches: 119, Mismatches: 11, Indels: 30
0.74 0.07 0.19
Matches are distributed among these distances:
52 14 0.12
53 8 0.07
54 10 0.08
55 7 0.06
56 3 0.03
57 9 0.08
58 9 0.08
59 2 0.02
60 5 0.04
61 20 0.17
62 32 0.27
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (60 bp):
ACATACATACATACATACATAACAGTAATAAACATAACATACATAATAAAAATACATTAA
Found at i:74471239 original size:24 final size:26
Alignment explanation
Indices: 74471058--74471154 Score: 101
Period size: 29 Copynumber: 3.6 Consensus size: 26
74471048 AGTATACCAT
74471058 ATAACATACATACATACATACAT-AC
1 ATAACATACATACATACATACATAAC
*
74471083 AT-ACATACATACATA-ATAGTAATATAC
1 ATAACATACATACATACATA--CATA-AC
*
74471110 ATAACATACATAATATACATACATTAAAC
1 ATAACATACAT-ACATACATACA-T-AAC
74471139 ATAACATACATACATA
1 ATAACATACATACATA
74471155 TATAAACAGT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
23 3 0.05
24 13 0.22
25 4 0.07
27 4 0.07
28 13 0.22
29 18 0.31
30 4 0.07
ACGTcount: A:0.54, C:0.19, G:0.01, T:0.27
Consensus pattern (26 bp):
ATAACATACATACATACATACATAAC
Found at i:74477031 original size:32 final size:32
Alignment explanation
Indices: 74476995--74477099 Score: 174
Period size: 32 Copynumber: 3.3 Consensus size: 32
74476985 AACTTACCTG
* * * *
74476995 AAATCATGCCACAAACATTTAACTAACTTCTA
1 AAATCATGTCACAAACACTTAACTTACTCCTA
74477027 AAATCATGTCACAAACACTTAACTTACTCCTA
1 AAATCATGTCACAAACACTTAACTTACTCCTA
74477059 AAATCATGTCACAAACACTTAACTTACTCCTA
1 AAATCATGTCACAAACACTTAACTTACTCCTA
74477091 AAATCATGT
1 AAATCATGT
74477100 GAAAAAAATC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.29
Consensus pattern (32 bp):
AAATCATGTCACAAACACTTAACTTACTCCTA
Found at i:74478980 original size:67 final size:68
Alignment explanation
Indices: 74478896--74479049 Score: 204
Period size: 67 Copynumber: 2.3 Consensus size: 68
74478886 GCAGTTAGTA
* * * * *
74478896 GACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGCTAA-CTCGCAGCT-CTACTACAACT
1 GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGCTAAGCTCGCAGCTCCAAC-ACAACT
74478959 AGCG
65 AGCG
* * *
74478963 GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAGCTCCAACACAGCTA
1 GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGCTAAGCTCGCAGCTCCAACACAACTA
*
74479028 GTG
66 GCG
74479031 GACCTACGCTCCCAGCTGA
1 GACCTACGCTCCCAGCTGA
74479050 TGACATAAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
67 38 0.50
68 35 0.46
69 3 0.04
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (68 bp):
GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGCTAAGCTCGCAGCTCCAACACAACTA
GCG
Found at i:74479046 original size:68 final size:68
Alignment explanation
Indices: 74478746--74479049 Score: 237
Period size: 68 Copynumber: 4.5 Consensus size: 68
74478736 GCAATGATGG
* * * *
74478746 AACACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAGAGCTCATAGAGTTAAG-TTCGCAG
1 AACACAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTT-GCAG
74478810 CTCC
65 CTCC
* ** * * * *
74478814 AACACAACTAGTAGACCTACACTCTTAGCTGATC-TCATAAAGGTTTTC-T-G-GTTTAAGATTG
1 AACACAACTAGTAGACCTACGCTCCCAGCTGA-CATTATAAAAG--CTCATAGAG-TTAAGCTTG
* * *
74478875 TAACCTCT
62 -CAGCTCC
** * * * * * *
74478883 AA-AGCAGTTAGTAGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGCTAA-CTCGCAG
1 AACA-CAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAG
74478946 CT-C
65 CTCC
* **
74478949 TACTACAACTAGCGGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAG
1 AAC-ACAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAG
74479014 CTCC
65 CTCC
* *
74479018 AACACAGCTAGTGGACCTACGCTCCCAGCTGA
1 AACACAACTAGTAGACCTACGCTCCCAGCTGA
74479050 TGACATAAAG
Statistics
Matches: 183, Mismatches: 38, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
66 1 0.01
67 49 0.27
68 82 0.45
69 48 0.26
70 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (68 bp):
AACACAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAGC
TCC
Found at i:74479106 original size:204 final size:204
Alignment explanation
Indices: 74478749--74479132 Score: 536
Period size: 204 Copynumber: 1.9 Consensus size: 204
74478739 ATGATGGAAC
* *
74478749 ACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAGAGCTCATAGAGTTAAGTTCGCAGCTCC
1 ACAACTAGCAGACCTAAGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGTTCGCAGCTCC
** * * * * * *
74478814 AACACAACTAGTAGACCTACACTCTTAGCTGATCTCATAAAGGTTTTCTGGTTTAAGATTGTAAC
66 AACACAACTAGTAGACCTACACTCCCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAAC
* ** * *
74478879 CTCTAAAGCAGTTAGTAGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGCTAACTCGC
131 CTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGTAGAGCTAACTCGC
74478944 AGCTCTACT
196 AGCTCTACT
* *
74478953 ACAACTAGCGGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTT-GCAGCTC
1 ACAACTAGCAGACCTAAGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAG-TTCGCAGCTC
* * * * *
74479017 CAACACAGCTAGTGGACCTACGCTCCCAGCTGATGACATAAAGGGTTACCGATTTAGGATCGTAA
65 CAACACAACTAGTAGACCTACACTCCCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAA
* *
74479082 CCTCCAAAGCAGCCAGCGGACCTACACTCCTAGCTGATATTATAAAAGCTC
130 CCTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTC
74479133 ACAGAGTTAA
Statistics
Matches: 155, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
204 153 0.99
205 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (204 bp):
ACAACTAGCAGACCTAAGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGTTCGCAGCTCC
AACACAACTAGTAGACCTACACTCCCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAAC
CTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGTAGAGCTAACTCGC
AGCTCTACT
Found at i:74482560 original size:29 final size:28
Alignment explanation
Indices: 74482528--74482585 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
74482518 AATTTTTTTT
*
74482528 AATAATTTAAATTGATTTTAATTATTAAA
1 AATAATTTAAATTAATTTTAATTA-TAAA
* * *
74482557 AATATTTTTATTTAATTTTAATTATAAA
1 AATAATTTAAATTAATTTTAATTATAAA
74482585 A
1 A
74482586 TATATTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AATAATTTAAATTAATTTTAATTATAAA
Found at i:74482597 original size:29 final size:29
Alignment explanation
Indices: 74482542--74482597 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
74482532 ATTTAAATTG
**
74482542 ATTTTAATTATTAAAAATATTTTTATTTA
1 ATTTTAATTATTAAAAATATTAATATTTA
74482571 ATTTTAATTA-TAAAATATATTAATATT
1 ATTTTAATTATTAAAA-ATATTAATATT
74482598 AATATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTAATTATTAAAAATATTAATATTTA
Found at i:74487016 original size:13 final size:13
Alignment explanation
Indices: 74486998--74487024 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74486988 TAAGGATAAT
74486998 TCATCCAAAAATA
1 TCATCCAAAAATA
74487011 TCATCCAAAAATA
1 TCATCCAAAAATA
74487024 T
1 T
74487025 GCTAAGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (13 bp):
TCATCCAAAAATA
Found at i:74487367 original size:17 final size:18
Alignment explanation
Indices: 74487336--74487377 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
74487326 TAATTTAACC
*
74487336 ATTTTTATTTCTATTAT-
1 ATTTTTGTTTCTATTATA
* *
74487353 ATTTTTGTTTTTATTTTA
1 ATTTTTGTTTCTATTATA
74487371 ATTTTTG
1 ATTTTTG
74487378 CATTCTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTTTGTTTCTATTATA
Found at i:74490889 original size:5 final size:5
Alignment explanation
Indices: 74490879--74490928 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
74490869 CTTTTCTTAG
* *
74490879 TTTTA TTTTA TTTTA TTTTA TTATT- TGTTA TATTA -TTTA TTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA -TTTTA TTTTA
74490929 CTAATCTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
4 5 0.13
5 27 0.71
6 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:74495094 original size:25 final size:24
Alignment explanation
Indices: 74495066--74495115 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
74495056 AATTCCCGCG
74495066 ACTT-CTTGAAGAAAATCGACAAGAA
1 ACTTGCTTGAA-AAAATC-ACAAGAA
**
74495091 ACTTGCTTTTAAAAATCACAAGAA
1 ACTTGCTTGAAAAAATCACAAGAA
74495115 A
1 A
74495116 GCAATCTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 8 0.36
25 10 0.45
26 4 0.18
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (24 bp):
ACTTGCTTGAAAAAATCACAAGAA
Found at i:74499849 original size:22 final size:23
Alignment explanation
Indices: 74499800--74499850 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
74499790 TTATTATTTG
*
74499800 TTTTATAATATTTTATATTTATA
1 TTTTATAATATTTTATATATATA
*
74499823 TTTTA-AATGTTTTATA-ATATA
1 TTTTATAATATTTTATATATATA
74499844 TGTTTAT
1 T-TTTAT
74499851 TGAAAAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 5 0.21
22 14 0.58
23 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATAATATTTTATATATATA
Found at i:74499903 original size:83 final size:82
Alignment explanation
Indices: 74499786--74499945 Score: 230
Period size: 83 Copynumber: 1.9 Consensus size: 82
74499776 TATTTTTTAT
* * * * * *
74499786 TTGTTTATTATTTGTTTTATAATATTTTATATTTATATTTTAAATGTTTTATAATATATGTTTAT
1 TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
74499851 TGAAAAGTTTTTTTAAAA
66 T-AAAAGTTTTTTTAAAA
* *
74499869 TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATTTTTTTAT
1 TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
*
74499934 TCAAAGTTTTTT
66 TAAAAGTTTTTT
74499946 AATTATATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
82 10 0.15
83 58 0.85
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (82 bp):
TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
TAAAAGTTTTTTTAAAA
Found at i:74500093 original size:18 final size:18
Alignment explanation
Indices: 74500056--74500172 Score: 58
Period size: 18 Copynumber: 6.9 Consensus size: 18
74500046 TTGAATAAAT
*
74500056 AAATATTATAAACAT-TTA
1 AAATATTATAAA-ATAATA
74500074 AAATATTATAAAATAAT-
1 AAATATTATAAAATAATA
*
74500091 AAATA--ATAAAAAAATTTA
1 AAATATTATAAAATAA--TA
* *
74500109 AAATGTT-T-GAATAA-A
1 AAATATTATAAAATAATA
* *
74500124 TAAATATTATAAAATATTT
1 -AAATATTATAAAATAATA
*
74500143 AAA-A-TAT-AAAT-TTA
1 AAATATTATAAAATAATA
74500157 AAATATTATAAAATAA
1 AAATATTATAAAATAA
74500173 ATGAGAAACA
Statistics
Matches: 74, Mismatches: 11, Indels: 28
0.65 0.10 0.25
Matches are distributed among these distances:
14 5 0.07
15 14 0.19
16 12 0.16
17 14 0.19
18 28 0.38
19 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (18 bp):
AAATATTATAAAATAATA
Found at i:74500108 original size:35 final size:34
Alignment explanation
Indices: 74500049--74500149 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 34
74500039 AAAACGTTTG
* *
74500049 AATAAATAAATATTATAAACATTTAAAATATTATA
1 AATAAATAAATATTAAAAAAATTTAAAATATT-TA
* * *
74500084 AA-ATAATAAATAATAAAAAAATTTAAAATGTTTG
1 AATA-AATAAATATTAAAAAAATTTAAAATATTTA
*
74500118 AATAAATAAATATTATAAAATATTTAAAATAT
1 AATAAATAAATATTA-AAAAAATTTAAAATAT
74500150 AAATTTAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
34 14 0.25
35 41 0.75
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (34 bp):
AATAAATAAATATTAAAAAAATTTAAAATATTTA
Found at i:74500128 original size:23 final size:22
Alignment explanation
Indices: 74500094--74500163 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 22
74500084 AAATAATAAA
* *
74500094 TAATAAAAAAATTTAAAATGTT
1 TAATAAATAAATTTAAAATATT
74500116 TGAATAAATAAATATTATAAAATATT
1 T-AATAAAT-AA-ATT-TAAAATATT
74500142 TAA-AATATAAATTTAAAATATT
1 TAATAA-ATAAATTTAAAATATT
74500164 ATAAAATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
22 10 0.24
23 9 0.22
24 6 0.15
25 7 0.17
26 9 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (22 bp):
TAATAAATAAATTTAAAATATT
Found at i:74500895 original size:27 final size:27
Alignment explanation
Indices: 74500852--74500903 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
74500842 AATTTAAAAA
*
74500852 AAAATTCAAAAAGTTTA-AAATAATTTT
1 AAAATCCAAAAAGTTTATAAA-AATTTT
74500879 AAAATCCAAAATA-TTTATAAAAATT
1 AAAATCCAAAA-AGTTTATAAAAATT
74500904 CAAAACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAATCCAAAAAGTTTATAAAAATTTT
Found at i:74509897 original size:21 final size:21
Alignment explanation
Indices: 74509873--74509917 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
74509863 GAAATCTCAC
*
74509873 ACAAAGAGTAAAATAATGCAT
1 ACAAAGAGTAAAACAATGCAT
* * *
74509894 ACAAAGTGTACACCAATGCAT
1 ACAAAGAGTAAAACAATGCAT
74509915 ACA
1 ACA
74509918 TAATAATTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (21 bp):
ACAAAGAGTAAAACAATGCAT
Found at i:74511222 original size:14 final size:15
Alignment explanation
Indices: 74511193--74511233 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
74511183 TTTAGGTTTG
74511193 AAAATTTTAATTAATT
1 AAAATTTT-ATTAATT
74511209 AAAATTTT-TTAATT
1 AAAATTTTATTAATT
*
74511223 AAAAATTTATT
1 AAAATTTTATT
74511234 TTCATCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 2 0.09
16 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATTTTATTAATT
Found at i:74512749 original size:17 final size:17
Alignment explanation
Indices: 74512730--74512762 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
74512720 TACAAATAAT
74512730 TTTTAATA-TTTTAAAA
1 TTTTAATAGTTTTAAAA
74512746 TTTTAATAGTTTTAAAA
1 TTTTAATAGTTTTAAAA
74512763 AAATCATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTAATAGTTTTAAAA
Found at i:74517302 original size:46 final size:46
Alignment explanation
Indices: 74517249--74517568 Score: 392
Period size: 46 Copynumber: 7.0 Consensus size: 46
74517239 GCTCTCTGAA
* *
74517249 ATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
74517295 ATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
74517341 ATGAAAAGAATAAGACCATGGTTGAAATATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * * *
74517387 GGGAAATGAAAAAGACCATGGTTGAAAGATACCATGACAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
74517433 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACTTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
74517479 ATGAAAAG-GATAAGACCATGGTTGAAAGATATCATGGCAACATGAC
1 ATGAAATGAG-TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
74517525 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
74517569 TCAAAGATAA
Statistics
Matches: 236, Mismatches: 35, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
45 1 0.00
46 234 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:74517499 original size:138 final size:138
Alignment explanation
Indices: 74517260--74517553 Score: 435
Period size: 138 Copynumber: 2.1 Consensus size: 138
74517250 TGAAATGCGT
* * * **
74517260 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACAATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGACAACATGACATGAAACGAATAAGACAATGGTTGAAAGAT
* * *
74517325 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAATATACCATGGCAACATGACGGG
66 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
74517390 AAATGAAA
131 AAATGAAA
* * *
74517398 AAGACCATGGTTGAAAGATACCATGACAGCGTGACATGAAACGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGACAACATGACATGAAACGAATAAGACAATGGTTGAAAGAT
* * *
74517463 ACCATGGCAACTTGACATGAAAAGGATAAGACCATGGTTGAAAGATATCATGGCAACATGACAGA
66 ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
**
74517528 AAATGAGT
131 AAATGAAA
*
74517536 AAGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
74517554 CACTATGGCA
Statistics
Matches: 139, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 139 1.00
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (138 bp):
AAGACCATGGTTGAAAGATACCATGACAACATGACATGAAACGAATAAGACAATGGTTGAAAGAT
ACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
AAATGAAA
Found at i:74518980 original size:29 final size:29
Alignment explanation
Indices: 74518907--74518989 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 29
74518897 ATAAATAGTA
* *
74518907 AATTTATACATGAACTTTAGTCTAATGTGT
1 AATTTATACATGAACTTTAAT-TAATGTGC
* *
74518937 AATTTGATAAATGAACTTTAATTTA-GTGC
1 AATTT-ATACATGAACTTTAATTAATGTGC
*
74518966 AATTATATACATGAAACTTGAATT
1 AATT-TATACATG-AACTTTAATT
74518990 GTGTTTCATA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
29 13 0.30
30 17 0.39
31 14 0.32
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (29 bp):
AATTTATACATGAACTTTAATTAATGTGC
Found at i:74524506 original size:20 final size:20
Alignment explanation
Indices: 74524457--74524508 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
74524447 CCCACCCAAC
* * *
74524457 TTCACCAATTCCTTCCCATA
1 TTCATCAATTACTTCCCACA
74524477 TTCATCAATTACTTCCCTACA
1 TTCATCAATTACTTCCC-ACA
74524498 TTCAT-AATTAC
1 TTCATCAATTAC
74524509 AATAACCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (20 bp):
TTCATCAATTACTTCCCACA
Found at i:74526782 original size:37 final size:37
Alignment explanation
Indices: 74526741--74526812 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
74526731 AACTTAATTA
74526741 ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTTTC
1 ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTTTC
*
74526778 ATTAATTTGAATATTTGGTTTAAAGTTAAAATTTT
1 ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTT
74526813 CATAGAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.38, C:0.01, G:0.10, T:0.51
Consensus pattern (37 bp):
ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTTTC
Found at i:74526936 original size:23 final size:23
Alignment explanation
Indices: 74526885--74526937 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
74526875 AATTCAAAAG
*
74526885 TAAAAT-ATAATATAATATTTAT
1 TAAAATGATAATATAACATTTAT
* *
74526907 CATAATGATAA-ATAACATTTAAT
1 TAAAATGATAATATAACATTT-AT
74526930 TAAAATGA
1 TAAAATGA
74526938 AATTAATCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (23 bp):
TAAAATGATAATATAACATTTAT
Found at i:74529305 original size:20 final size:18
Alignment explanation
Indices: 74529258--74529306 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
74529248 CAAGATAGAC
74529258 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
* *
74529275 ATCAAAATAATCACTTTAAT
1 ATTAAATTAAT-A-TTTAAT
74529295 ATTAAATTAATA
1 ATTAAATTAATA
74529307 AAATACTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 8 0.32
19 2 0.08
20 15 0.60
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:74539150 original size:11 final size:11
Alignment explanation
Indices: 74539134--74539159 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74539124 AAACCACCAG
74539134 TACTCTAACAA
1 TACTCTAACAA
74539145 TACTCTAACAA
1 TACTCTAACAA
74539156 TACT
1 TACT
74539160 TCGTGGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.31
Consensus pattern (11 bp):
TACTCTAACAA
Found at i:74547111 original size:24 final size:24
Alignment explanation
Indices: 74547084--74547135 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
74547074 TTAGTAAGTC
*
74547084 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
74547108 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
74547132 AAAT
1 AAAT
74547136 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:74549074 original size:24 final size:24
Alignment explanation
Indices: 74549046--74549097 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
74549036 TTAGTAAATC
*
74549046 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
74549070 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
74549094 AAAT
1 AAAT
74549098 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:74551358 original size:5 final size:5
Alignment explanation
Indices: 74551348--74551385 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
74551338 AGTTTTTGTG
*
74551348 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAC AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
74551386 GAACATACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:74552175 original size:16 final size:18
Alignment explanation
Indices: 74552154--74552194 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 18
74552144 AAAATAAGGT
74552154 ATATTTTAA-TTAA-ATA
1 ATATTTTAACTTAATATA
74552170 ATATTTTAATCTTAATATA
1 ATATTTTAA-CTTAATATA
74552189 ATATTT
1 ATATTT
74552195 GGTACATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.41
18 4 0.18
19 9 0.41
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATTTTAACTTAATATA
Found at i:74553420 original size:9 final size:9
Alignment explanation
Indices: 74553406--74553438 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
74553396 TCATATCTCC
74553406 ATATATCAA
1 ATATATCAA
74553415 ATATATCAA
1 ATATATCAA
74553424 ATATATCAA
1 ATATATCAA
74553433 ATATAT
1 ATATAT
74553439 AACCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
ATATATCAA
Found at i:74562398 original size:42 final size:42
Alignment explanation
Indices: 74562351--74562462 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
74562341 ATATGTGTTA
*
74562351 TCGTGTAGGACCACGTTTGGGACGTTGGCATC-ATATTTGATT
1 TCGTGTAAGACCAC-TTTGGGACGTTGGCATCGATATTTGATT
**
74562393 TCGTGTAAGACC-CTATCTGGGACACTGGCATCGATATTTGATT
1 TCGTGTAAGACCACT-T-TGGGACGTTGGCATCGATATTTGATT
* * *
74562436 ACATGTAAGACCACATCTGGGACGTTG
1 TCGTGTAAGACCAC-TTTGGGACGTTG
74562463 ACATTGTACG
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.02
41 2 0.04
42 24 0.42
43 28 0.49
44 1 0.02
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACTTTGGGACGTTGGCATCGATATTTGATT
Found at i:74562443 original size:43 final size:42
Alignment explanation
Indices: 74562376--74562458 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 42
74562366 TTTGGGACGT
* *
74562376 TGGCATCATATTTGATTTCGTGTAAGACC-CTATCTGGGACAC
1 TGGCATCATATTTGATTACATGTAAGACCAC-ATCTGGGACAC
74562418 TGGCATCGATATTTGATTACATGTAAGACCACATCTGGGAC
1 TGGCATC-ATATTTGATTACATGTAAGACCACATCTGGGAC
74562459 GTTGACATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 7 0.19
43 29 0.78
44 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (42 bp):
TGGCATCATATTTGATTACATGTAAGACCACATCTGGGACAC
Found at i:74568600 original size:23 final size:23
Alignment explanation
Indices: 74568552--74568624 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
74568542 CCACAAATTA
* * *
74568552 TTTATAAAATACGCAACATAGAC
1 TTTATAGAATACGCCACATAGGC
*
74568575 TTTATAGAATACGCCACACAGGC
1 TTTATAGAATACGCCACATAGGC
* * *
74568598 TTTACAGAATATGTCACATAGGC
1 TTTATAGAATACGCCACATAGGC
74568621 TTTA
1 TTTA
74568625 CAAAATATGA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (23 bp):
TTTATAGAATACGCCACATAGGC
Found at i:74568625 original size:23 final size:23
Alignment explanation
Indices: 74568567--74568651 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
74568557 AAAATACGCA
* * * *
74568567 ACATAGACTTTATAGAATACGCC
1 ACATAGGCTTTACAGAATATGAC
* *
74568590 ACACAGGCTTTACAGAATATGTC
1 ACATAGGCTTTACAGAATATGAC
*
74568613 ACATAGGCTTTACAAAATATGAC
1 ACATAGGCTTTACAGAATATGAC
* *
74568636 ATAAAGGCTTTACAGA
1 ACATAGGCTTTACAGA
74568652 GAATTATGTC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (23 bp):
ACATAGGCTTTACAGAATATGAC
Found at i:74569090 original size:12 final size:12
Alignment explanation
Indices: 74569073--74569097 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74569063 GATACTTCAT
74569073 ACACACACATAC
1 ACACACACATAC
74569085 ACACACACATAC
1 ACACACACATAC
74569097 A
1 A
74569098 TTCACTAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (12 bp):
ACACACACATAC
Found at i:74570961 original size:18 final size:17
Alignment explanation
Indices: 74570940--74570995 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
74570930 AAAAATTGAA
*
74570940 ATAACTTTTAAAATATTT
1 ATAACTTTTAAAAT-TTC
** *
74570958 ATAAAAATTTCAAATTTC
1 AT-AACTTTTAAAATTTC
74570976 ATAACTTTTAAAATTT-
1 ATAACTTTTAAAATTTC
74570992 ATAA
1 ATAA
74570996 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
16 4 0.13
17 11 0.37
18 6 0.20
19 9 0.30
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAACTTTTAAAATTTC
Found at i:74573256 original size:164 final size:164
Alignment explanation
Indices: 74572985--74573311 Score: 645
Period size: 164 Copynumber: 2.0 Consensus size: 164
74572975 TGTGTTATGT
74572985 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
74573050 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
74573115 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
*
74573149 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTT
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
74573214 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
74573279 TGATATGTGAGTAATATATATATGCCTCTTGCA
131 TGATATGTGAGTAATATATATATGCCTCTTGCA
74573312 TCTGTATTTC
Statistics
Matches: 162, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 162 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (164 bp):
GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
TGATATGTGAGTAATATATATATGCCTCTTGCAA
Found at i:74581654 original size:48 final size:47
Alignment explanation
Indices: 74581567--74581991 Score: 345
Period size: 48 Copynumber: 8.8 Consensus size: 47
74581557 ATACTAGGGT
* * * *
74581567 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCGACCTTTA
* * **
74581615 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGACATGGCATCGACCTTTA
* **
74581663 TAT-ATGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGACCTCAA
1 TATGA-GAGCTAGTGTAAGACCATGTTTG-GACATGGCATCGACCTTTA
* * * *
74581711 CATGGGAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTT-GG-ACATGGCATCGACCTTTA
* * *
74581760 TATGAGAGCTAGTGTAAGACTAT-TTCTGGGACATGGCATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTT-T-GGACATGGCATCGACCTTTA
* * * * * * *
74581808 TATGTGAGCCAGTATAAGACTATGTATGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATCGACCTTTA
* * * * * *
74581856 TATGATAGGTAGTGTAAGATCATGTTTGAGACATGGCATCGGTCTCGTCA
1 TATGAGAGCTAGTGTAAGACCATGTTTG-GACATGGCATC-GAC-CTTTA
* **
74581906 TGTG-G-GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGG-ACATGGCATC-G-ACCTTTA
* * *
74581954 TATGAGAGCTAATATAAGACCATGTGTAGGACATGGCA
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGACATGGCA
74581992 ACGGCATCTT
Statistics
Matches: 305, Mismatches: 55, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
47 5 0.02
48 220 0.72
49 48 0.16
50 29 0.10
51 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (47 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGACATGGCATCGACCTTTA
Found at i:74581870 original size:145 final size:145
Alignment explanation
Indices: 74581572--74581991 Score: 444
Period size: 145 Copynumber: 2.9 Consensus size: 145
74581562 AGGGTTATGT
*
74581572 GAGCCAGTGTAAGACCATGTTT-GGAACATAGCATCGACATTTATATGAGAGCTAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACC
* * *
74581636 ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCTAGTGTAAGACCATGTCTGAGACATGGCA
66 ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCCAGTATAAGACCATGTATGAGACATGGCA
* *
74581701 TCGACCTCAACATGG
131 TCGACATCAACATGA
*
74581716 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACT
1 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACC
* * * * *
74581781 ATTTCTGGGACATGGCATCGGCCTTGATATGTGAGCCAGTATAAGACTATGTATG-GAACATGGC
66 ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCCAGTATAAGACCATGTATGAG-ACATGGC
* ** *
74581845 ATCGGCATTTATATGA
130 ATCGACATCAACATGA
* ** * * * * *
74581861 TAGGTAGTGTAAGATCATGTTTGAG-ACATGGCATCGGTC-TCGTCATGTG-G-GCTAGTGTAAG
1 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATC-GACAT--TTATATGAGAGCTAGTGTAAG
* * * *
74581922 ACCATGT-TTGGAACATGGCATCGGCAC-CGATATATGAGAGCTAATATAAGACCATGTGT-AGG
63 ACCATGTCTAGG-ACATGGCATCGGC-CTCGATATAT--GAGCCAGTATAAGACCATGTATGA-G
74581984 ACATGGCA
123 ACATGGCA
74581992 ACGGCATCTT
Statistics
Matches: 232, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
143 3 0.01
144 69 0.30
145 128 0.55
146 31 0.13
147 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (145 bp):
GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACC
ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCCAGTATAAGACCATGTATGAGACATGGCA
TCGACATCAACATGA
Found at i:74581920 original size:193 final size:192
Alignment explanation
Indices: 74581567--74581944 Score: 467
Period size: 193 Copynumber: 2.0 Consensus size: 192
74581557 ATACTAGGGT
* * * *
74581567 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGACATTTATATGAGAGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGACATTGATATGAGAGCCAGTATAA
* *
74581632 GACCATGTCTAGGACATGGCATCGGCCTCGATATATGAGCTAGTGTAAGACCATGTCTGAGACAT
66 GACCATGTATAGGACATGGCATCGGCATCGATATATGAGCTAGTGTAAGACCATGTCTGAGACAT
74581697 GGCATCGACCTCAACATGGGAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTA
131 GGCATCGACCTCAACATGGGAGCCAGTGTAAGACCATGTTT-GGAACATGGCATCGACATTTA
* * * * * * *
74581760 TATGAGAGCTAGTGTAAGACTAT-TTCTGGGACATGGCATCGGCCTTGATATGTGAGCCAGTATA
1 TATGAGAGCCAGTGTAAGACCATGTT-TGGAACATAGCATCGACATTGATATGAGAGCCAGTATA
* ** * * *
74581824 AGACTATGTAT-GGAACATGGCATCGGCATTTATATGAT-AGGTAGTGTAAGATCATGTTTGAGA
65 AGACCATGTATAGG-ACATGGCATCGGCATCGATAT-ATGAGCTAGTGTAAGACCATGTCTGAGA
** ** *
74581887 CATGGCATCGGTCTCGTCATGTGG-GCTAGTGTAAGACCATGTTTGGAACATGGCATCG
128 CATGGCATCGACCTCAACATG-GGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
74581945 GCACCGATAT
Statistics
Matches: 157, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
192 18 0.11
193 135 0.86
194 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (192 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGACATTGATATGAGAGCCAGTATAA
GACCATGTATAGGACATGGCATCGGCATCGATATATGAGCTAGTGTAAGACCATGTCTGAGACAT
GGCATCGACCTCAACATGGGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
Found at i:74584220 original size:43 final size:43
Alignment explanation
Indices: 74584168--74584253 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
74584158 CTCACATGAC
*
74584168 CCAGAACTTTTCACATGGCTTGCCACACTGCAGTATCTCCCTT
1 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
74584211 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
1 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
74584254 ACAGCTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (43 bp):
CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
Found at i:74587391 original size:44 final size:44
Alignment explanation
Indices: 74587341--74587426 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
74587331 CAACAATCGG
74587341 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
1 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
*
74587385 TCTACTAGTGGAATCTGAATCTTGCATTGAGTTATATTTTGC
1 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGC
74587427 CAGGGCTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (44 bp):
TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
Found at i:74587716 original size:18 final size:18
Alignment explanation
Indices: 74587684--74587719 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74587674 ATAAAAACTA
74587684 AAACTGAAAACAAGAAAT
1 AAACTGAAAACAAGAAAT
74587702 AAACATGAAAA-AAGAAAT
1 AAAC-TGAAAACAAGAAAT
74587720 GTACTTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.69, C:0.08, G:0.11, T:0.11
Consensus pattern (18 bp):
AAACTGAAAACAAGAAAT
Found at i:74592795 original size:46 final size:48
Alignment explanation
Indices: 74592600--74592865 Score: 189
Period size: 46 Copynumber: 5.6 Consensus size: 48
74592590 TGTATAATGT
* * *
74592600 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-CGTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAAGC
* * * *
74592647 CGATGTCATGTCCCAGACATGGTCTTACACTGAATTTAACAT-ATCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-ACTT-ACATCGT-CAAGC
* * * * **
74592697 CGATGCCACGTCCTAGACATGGTTTTACACTGAC--ACATCTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAAGC
* * *
74592743 CAATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATC-TCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAA-GC
* **
74592789 CGATG-CATGTCCTAGACAT-GTCTTACACT-AGC-T-C-TCGTTTCAATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTTACATCG--TCAA-GC
*
74592835 CGATGCCATGTCCCAGACATGGACTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
74592866 AGCTCTCGTA
Statistics
Matches: 172, Mismatches: 33, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 11 0.06
45 15 0.09
46 53 0.31
47 45 0.26
48 10 0.06
49 5 0.03
50 31 0.18
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAAGC
Found at i:74610717 original size:20 final size:19
Alignment explanation
Indices: 74610691--74610740 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
74610681 AGAAAACTGT
74610691 TGTACTTCGGTACCCCTGA
1 TGTACTTCGGTACCCCTGA
*
74610710 TCGTACTTAC-GTGCCCCTGA
1 T-GTACTT-CGGTACCCCTGA
*
74610730 TGTATTTCGGT
1 TGTACTTCGGT
74610741 TCTCTTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 1 0.04
19 8 0.31
20 16 0.62
21 1 0.04
ACGTcount: A:0.14, C:0.28, G:0.22, T:0.36
Consensus pattern (19 bp):
TGTACTTCGGTACCCCTGA
Found at i:74629854 original size:36 final size:36
Alignment explanation
Indices: 74629812--74629884 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
74629802 ACTCGCTTCA
*
74629812 GGATTTGTAACTAACTTTGAATTAGGGTTTTAGGAT
1 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
* * *
74629848 GGATTTGTAGCTAACTTCGGATTATGGTTTTAGGAT
1 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
74629884 G
1 G
74629885 AAACAAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.07, G:0.27, T:0.41
Consensus pattern (36 bp):
GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
Found at i:74636085 original size:29 final size:29
Alignment explanation
Indices: 74636043--74636104 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
74636033 GAATGTTGAG
74636043 GCTAAGATTGACGATGAAGATTAAGTTAT
1 GCTAAGATTGACGATGAAGATTAAGTTAT
74636072 GCTAAGATTGACGATGAAGATTAAGTTAT
1 GCTAAGATTGACGATGAAGATTAAGTTAT
74636101 GCTA
1 GCTA
74636105 TTATTATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (29 bp):
GCTAAGATTGACGATGAAGATTAAGTTAT
Found at i:74638227 original size:21 final size:21
Alignment explanation
Indices: 74638203--74638250 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
74638193 GACATGCCCG
74638203 TGTGACCCTACGACACACCCA
1 TGTGACCCTACGACACACCCA
*
74638224 TGTGACCCTACGACACACCCG
1 TGTGACCCTACGACACACCCA
74638245 TGTGAC
1 TGTGAC
74638251 AAGCCGTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.40, G:0.19, T:0.17
Consensus pattern (21 bp):
TGTGACCCTACGACACACCCA
Found at i:74641992 original size:17 final size:17
Alignment explanation
Indices: 74641956--74641993 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
74641946 ACCACCCTAT
*
74641956 TTTATTTTATGTTTGAA
1 TTTATTTTATGTTAGAA
74641973 TTTATTTATATGTTAG-A
1 TTTATTT-TATGTTAGAA
74641990 TTTA
1 TTTA
74641994 AGTAGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTATTTTATGTTAGAA
Found at i:74646841 original size:80 final size:79
Alignment explanation
Indices: 74646704--74646928 Score: 224
Period size: 80 Copynumber: 2.8 Consensus size: 79
74646694 TTGAATGCTG
* * * *
74646704 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
74646767 TTGTGCGAGATA-CAAA
63 TTGTGCGAGATATCAAA
* *
74646783 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCTAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCTAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
* * *
74646848 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * * * * *
74646864 TCTGGGTTATGTCCCGAAGGCATTGTG-TGAGTTACAAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCT-AGATACTAAATCCGGGCTAAGTCCCGAAGGCATTT
74646928 G
65 G
74646929 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 68 0.56
81 14 0.12
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:74646914 original size:39 final size:39
Alignment explanation
Indices: 74646757--74646926 Score: 178
Period size: 40 Copynumber: 4.3 Consensus size: 39
74646747 GGACTAAGAT
* *
74646757 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGATACAAAATCCGGGTTAAGTC
* * *
74646797 CCGAAGGCCTTTGTGCTAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGATACAAAATCCGGGTTAAGTC
* ** * *
74646837 CCGAAGGCATTCGTGCGAGTTATTAAATCTGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACAAAATCCGGGTTAAGTC
* * * * *
74646877 CCGAAGGCATTGTGTGAGTTACAAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACAAAATCCGGGTTAAGTC
74646916 CCGAAGGCATT
1 CCGAAGGCATT
74646927 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 36 0.32
40 74 0.67
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACAAAATCCGGGTTAAGTC
Found at i:74654043 original size:80 final size:79
Alignment explanation
Indices: 74653959--74654130 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
74653949 GGACTAAGAT
*
74653959 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
74654023 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
74654039 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
74654104 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
74654118 CCGAAGGCATTTG
1 CCGAAGGCATTTG
74654131 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:74654110 original size:39 final size:39
Alignment explanation
Indices: 74653906--74654128 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
74653896 TTGAATGCTG
* * * * *
74653906 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
74653946 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
74653985 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
74654026 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
74654066 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
74654105 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74654129 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:74654148 original size:79 final size:80
Alignment explanation
Indices: 74653986--74654163 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
74653976 AGATACAAAT
* * * *
74653986 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
74654051 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
74654066 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
74654130 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
74654145 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74654164 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:74656294 original size:21 final size:21
Alignment explanation
Indices: 74656268--74656310 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
74656258 CCAGTCCAGG
74656268 TTAAATTCTAATTGTAACATA
1 TTAAATTCTAATTGTAACATA
74656289 TTAAATTCTAATTGTAACATA
1 TTAAATTCTAATTGTAACATA
74656310 T
1 T
74656311 GCTCGAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (21 bp):
TTAAATTCTAATTGTAACATA
Found at i:74660686 original size:23 final size:23
Alignment explanation
Indices: 74660660--74660708 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
74660650 AATTAAAAAG
74660660 ATGAAAGCATATTAGCTATCATT
1 ATGAAAGCATATTAGCTATCATT
74660683 ATGAAAGCATATTAGCTATCATT
1 ATGAAAGCATATTAGCTATCATT
74660706 ATG
1 ATG
74660709 TTGTTTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:74660752 original size:9 final size:9
Alignment explanation
Indices: 74660740--74660771 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
74660730 ACAAATATTA
74660740 AAAATAAAC
1 AAAATAAAC
74660749 AAAATAAAC
1 AAAATAAAC
74660758 AAAATAAAC
1 AAAATAAAC
74660767 AAAAT
1 AAAAT
74660772 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:74665125 original size:23 final size:23
Alignment explanation
Indices: 74665099--74665147 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
74665089 AATTAAAAAG
74665099 ATGAAAGCATATTAGCTATCATT
1 ATGAAAGCATATTAGCTATCATT
74665122 ATGAAAGCATATTAGCTATCATT
1 ATGAAAGCATATTAGCTATCATT
74665145 ATG
1 ATG
74665148 TTGTTTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:74665237 original size:9 final size:9
Alignment explanation
Indices: 74665225--74665256 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
74665215 ACAAATATTA
74665225 AAAATAAAC
1 AAAATAAAC
74665234 AAAATAAAC
1 AAAATAAAC
74665243 AAAATAAAC
1 AAAATAAAC
74665252 AAAAT
1 AAAAT
74665257 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:74672322 original size:14 final size:14
Alignment explanation
Indices: 74672303--74672337 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
74672293 TGTTTGTCGG
*
74672303 TAAAATATTTTTTA
1 TAAAATAATTTTTA
74672317 TAAAATAATTTTTA
1 TAAAATAATTTTTA
*
74672331 AAAAATA
1 TAAAATA
74672338 GCTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TAAAATAATTTTTA
Found at i:74672347 original size:18 final size:18
Alignment explanation
Indices: 74672324--74672366 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
74672314 TTATAAAATA
*
74672324 ATTTTTAAAAAATAGCTT
1 ATTTTTAAAAAATAACTT
* * *
74672342 ATTTTTTAAAAGTAATTT
1 ATTTTTAAAAAATAACTT
74672360 ATTTTTA
1 ATTTTTA
74672367 TGATGTTTGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (18 bp):
ATTTTTAAAAAATAACTT
Found at i:74679873 original size:43 final size:43
Alignment explanation
Indices: 74679753--74679906 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
74679743 AGCTCATACA
* * **
74679753 ATGCC-ATATCCCAGATATGGTCTTACATC-TTATCATATATTG
1 ATGCCAATATCCCAGACATGGTCTTACA-CATAATCATATAACG
* * *
74679795 ATGCCACTATCCTAGACAGGGTCTTACACGA-AATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACAC-ATAATCATATAACG
* * *
74679838 ATGCCAATATCCCATACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCATATA-ACG
* * *
74679881 ATACCAATGTCCCAGACATAGTCTTA
1 ATGCCAATATCCCAGACATGGTCTTA
74679907 TATGTAATCA
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
42 8 0.09
43 82 0.91
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACATAATCATATAACG
Found at i:74682811 original size:79 final size:80
Alignment explanation
Indices: 74682736--74682892 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
74682726 AACCCGGTTA
* * * *
74682736 TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTC
74682799 GGGCTTAGCCCGGAAT
65 GGGCTTAGCCCGGAAT
* ** * *
74682815 TAGTATCTCACACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCG
1 TAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCG
74682879 GGACTTAGCCCGGA
66 GG-CTTAGCCCGGA
74682893 CATCATTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 44 0.67
80 19 0.29
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCG
GGCTTAGCCCGGAAT
Found at i:74682829 original size:39 final size:40
Alignment explanation
Indices: 74682708--74682892 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
74682698 GCTACTCGTT
* * * * *
74682708 CAAATGCCTTCAGGACATAACCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACA
* * * *
74682748 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACA
*
74682788 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACA
* * * *
74682827 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAACTCA-CA
74682868 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74682893 CATCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 77 0.62
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACA
Found at i:74688883 original size:66 final size:66
Alignment explanation
Indices: 74688803--74688938 Score: 227
Period size: 66 Copynumber: 2.1 Consensus size: 66
74688793 GACGCTCGTA
* * *
74688803 TGCCTTGGTCGTGGGAAATCTGGAGGGGTTACTGACTTGGGTCACATGGCCGGCCACACGCCTAT
1 TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
74688868 G
66 G
* *
74688869 TGCCTTGGTTGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACATGCCCAT
1 TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
74688934 G
66 G
74688935 TGCC
1 TGCC
74688939 AACCCTATGT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (66 bp):
TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
G
Found at i:74689787 original size:17 final size:17
Alignment explanation
Indices: 74689765--74689797 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
74689755 ACTATAAAAC
74689765 ATAGAAAAATAACACAA
1 ATAGAAAAATAACACAA
74689782 ATAGAAAAATAACACA
1 ATAGAAAAATAACACA
74689798 GAGTAAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.12, G:0.06, T:0.12
Consensus pattern (17 bp):
ATAGAAAAATAACACAA
Found at i:74690481 original size:43 final size:43
Alignment explanation
Indices: 74690433--74690590 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
74690423 AATGCCATAG
* * * *
74690433 CCCAGATATGGTTTTACATGTTATCACATATCGATGCCACTGT
1 CCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT
* * * * *
74690476 CCCAGACAGGGTCTTACACGAAATCATATAACGATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT
** * **
74690519 CTAAAACATGGTCTTACATGTAATCACA-ATAAAATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATGT
*
74690562 CCCAGACATGGTTTTACATGTAATCACAT
1 CCCAGACATGGTCTTACATGTAATCACAT
74690591 CTCAGTAATC
Statistics
Matches: 90, Mismatches: 23, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
CCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT
Found at i:74690779 original size:35 final size:35
Alignment explanation
Indices: 74690710--74690779 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
74690700 ACATTCGTAG
**
74690710 CAATTCAATGATAATGAAACATATATAATTCAATT
1 CAATTCAATGATAATGAAACATATATAACACAATT
* *
74690745 CAATTCAATGATAAAT-AAGCATTTATAACACAATT
1 CAATTCAATGAT-AATGAAACATATATAACACAATT
74690780 TAAATATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 27 0.90
36 3 0.10
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.33
Consensus pattern (35 bp):
CAATTCAATGATAATGAAACATATATAACACAATT
Found at i:74692780 original size:17 final size:18
Alignment explanation
Indices: 74692755--74692793 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
74692745 AAAGCTTGTG
*
74692755 AACTTTTTATTTTA-GAA
1 AACTATTTATTTTAGGAA
74692772 AACTATTTATTTTAGGAA
1 AACTATTTATTTTAGGAA
74692790 AACT
1 AACT
74692794 TAAATTTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (18 bp):
AACTATTTATTTTAGGAA
Found at i:74702709 original size:23 final size:23
Alignment explanation
Indices: 74702666--74702709 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
74702656 TTTTTATTCA
*
74702666 TATTAATTTCATTATGCATATTT
1 TATTAATTTCATAATGCATATTT
*
74702689 TATTACTTTCATCAATG-ATAT
1 TATTAATTTCAT-AATGCATAT
74702710 ACCTATACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (23 bp):
TATTAATTTCATAATGCATATTT
Found at i:74710850 original size:3 final size:3
Alignment explanation
Indices: 74710842--74710917 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
74710832 TTCATAACCA
74710842 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
74710890 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
74710918 TCGTGTTTCT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:74717733 original size:6 final size:6
Alignment explanation
Indices: 74717714--74717811 Score: 106
Period size: 6 Copynumber: 16.3 Consensus size: 6
74717704 ATATGAAAAC
* * * **
74717714 AAAATA AACATA AAACTA AAAATA AAAATG AACCTA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * * *
74717762 AAGAGA AAAATA AAAATA AACATA AAAATA AAAATA AACATA AAGATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
74717810 AA
1 AA
74717812 TGGACTCAAT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:74717737 original size:18 final size:18
Alignment explanation
Indices: 74717714--74717811 Score: 126
Period size: 18 Copynumber: 5.4 Consensus size: 18
74717704 ATATGAAAAC
*
74717714 AAAATAAACATAAA-ACTA
1 AAAATAAAAATAAACA-TA
* *
74717732 AAAATAAAAATGAACCTA
1 AAAATAAAAATAAACATA
* *
74717750 AAAATAAAAATAAAGAGA
1 AAAATAAAAATAAACATA
74717768 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACATA
74717786 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACATA
*
74717804 AAGATAAA
1 AAAATAAA
74717812 TGGACTCAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (18 bp):
AAAATAAAAATAAACATA
Found at i:74719392 original size:3 final size:3
Alignment explanation
Indices: 74719384--74719410 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
74719374 AGAACAAGGG
74719384 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
74719411 ATCTAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:74728022 original size:13 final size:13
Alignment explanation
Indices: 74728004--74728035 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
74727994 GCTCAGCAGG
74728004 GACATGCCCGTGT
1 GACATGCCCGTGT
*
74728017 GACATGGCCGTGT
1 GACATGCCCGTGT
74728030 GACATG
1 GACATG
74728036 ATTGCCAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:74730114 original size:27 final size:27
Alignment explanation
Indices: 74730084--74730139 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
74730074 AATAAGTAAA
*
74730084 AACAAAAAATTATACATAAATATTTCT
1 AACAAAAAATTATAAATAAATATTTCT
*
74730111 AACAGAAAATTATAAATAAATATTTCT
1 AACAAAAAATTATAAATAAATATTTCT
74730138 AA
1 AA
74730140 ACATCTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (27 bp):
AACAAAAAATTATAAATAAATATTTCT
Found at i:74735133 original size:79 final size:81
Alignment explanation
Indices: 74734997--74735181 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
74734987 TTGAATGATG
* *
74734997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
74735061 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
74735076 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
74735138 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
74735156 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74735182 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:74735195 original size:40 final size:40
Alignment explanation
Indices: 74734998--74735181 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
74734988 TGAATGATGT
* * * *
74734998 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
74735038 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
74735078 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
74735116 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74735157 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74735182 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:74735203 original size:79 final size:79
Alignment explanation
Indices: 74735050--74735214 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
74735040 GGACTAAGAT
* * **
74735050 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
74735115 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74735129 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74735192 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74735208 CCGAAGG
1 CCGAAGG
74735215 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74743057 original size:78 final size:81
Alignment explanation
Indices: 74742937--74743119 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 81
74742927 TGAATGATGT
* *
74742937 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAAT
*
74743000 TGTGCGAGATACTA-ATT
65 TGTGCGAGATACTATA-A
* * * **
74743017 CC-GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAATT
*
74743079 GTGCGAGTTACTATAA
66 GTGCGAGATACTATAA
*
74743095 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74743120 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 50 0.57
79 21 0.24
80 16 0.18
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAATT
GTGCGAGATACTATAA
Found at i:74743126 original size:40 final size:40
Alignment explanation
Indices: 74742936--74743119 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74742926 TTGAATGATG
* * * *
74742936 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74742976 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
74743016 TCC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74743054 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74743095 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74743120 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 28 0.23
39 12 0.10
40 73 0.59
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74743137 original size:80 final size:77
Alignment explanation
Indices: 74742989--74743152 Score: 188
Period size: 80 Copynumber: 2.1 Consensus size: 77
74742979 GGACTAAGAT
* * **
74742989 CCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
74743054 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
74743067 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACC-GGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74743130 TATATCCGGTTAAATT
62 TAAATCCGGTTAAATC
74743146 CCGAAGG
1 CCGAAGG
74743153 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
77 2 0.03
78 24 0.33
79 22 0.30
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:74759319 original size:79 final size:81
Alignment explanation
Indices: 74759183--74759367 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
74759173 TTGAATGATG
* *
74759183 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
74759247 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
74759262 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
74759324 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
74759342 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74759368 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:74759381 original size:40 final size:40
Alignment explanation
Indices: 74759184--74759367 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
74759174 TGAATGATGT
* * * *
74759184 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
74759224 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
74759264 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
74759302 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74759343 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74759368 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:74759389 original size:79 final size:79
Alignment explanation
Indices: 74759236--74759400 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
74759226 GGACTAAGAT
* * **
74759236 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
74759301 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74759315 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74759378 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74759394 CCGAAGG
1 CCGAAGG
74759401 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74764812 original size:70 final size:70
Alignment explanation
Indices: 74764737--74764877 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
74764727 TATCATCTAT
74764737 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
1 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
74764802 ACAGC
66 ACAGC
*
74764807 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACGGTTTATCACCACTCCACCCCAACC
1 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
74764872 ACAGC
66 ACAGC
74764877 A
1 A
74764878 GCCTATATTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (70 bp):
AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
ACAGC
Found at i:74767582 original size:24 final size:24
Alignment explanation
Indices: 74767567--74767678 Score: 161
Period size: 24 Copynumber: 4.7 Consensus size: 24
74767557 CGGATTTGAG
*
74767567 TGGCACTATGTGTGCGTATTGGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
74767591 TGGAACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
74767615 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
* * * *
74767639 TGGCACTACGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGTATTTGTA
74767663 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
74767679 GAGTTGAATC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 78 1.00
ACGTcount: A:0.19, C:0.13, G:0.30, T:0.38
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:74769094 original size:28 final size:27
Alignment explanation
Indices: 74769058--74769150 Score: 109
Period size: 27 Copynumber: 3.4 Consensus size: 27
74769048 ATAATATGAT
*
74769058 AGAGTCACCAGATACAAATAATCGTGGC
1 AGAGCCACCAGATACAAATAAT-GTGGC
*
74769086 AGAGCCACCAGAATAGAAAT-ATGTGGC
1 AGAGCCACCAG-ATACAAATAATGTGGC
*
74769113 AGAGCCACCAGAT-CAGATAATTGTGGC
1 AGAGCCACCAGATACAAATAA-TGTGGC
*
74769140 ATAGCCACCAG
1 AGAGCCACCAG
74769151 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.05
26 3 0.05
27 32 0.56
28 12 0.21
29 7 0.12
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAGCCACCAGATACAAATAATGTGGC
Found at i:74776030 original size:15 final size:15
Alignment explanation
Indices: 74776010--74776041 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
74776000 ATTCTTGTCA
74776010 AAAGTGGTAAGTTTT
1 AAAGTGGTAAGTTTT
74776025 AAAGTGGTAAGTTTT
1 AAAGTGGTAAGTTTT
74776040 AA
1 AA
74776042 TTTTAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (15 bp):
AAAGTGGTAAGTTTT
Found at i:74781296 original size:24 final size:24
Alignment explanation
Indices: 74781267--74781314 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
74781257 CCCGAAAGGG
74781267 TTTCCACGTAAAAATCTATGTGTT
1 TTTCCACGTAAAAATCTATGTGTT
74781291 TTTCCACGTAAAAATCTATGTGTT
1 TTTCCACGTAAAAATCTATGTGTT
74781315 CTTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (24 bp):
TTTCCACGTAAAAATCTATGTGTT
Found at i:74784997 original size:18 final size:20
Alignment explanation
Indices: 74784961--74785007 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74784951 AGTTGTAAGT
74784961 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
74784981 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
74785000 ATGATATA
1 AT-ATATA
74785008 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:74785567 original size:101 final size:100
Alignment explanation
Indices: 74785355--74785588 Score: 265
Period size: 101 Copynumber: 2.3 Consensus size: 100
74785345 ATTCATTGTG
* **
74785355 AGTCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTATCAGATGGTTAAGTCACGTGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAACGTTAAGTCACGTGTGTAGT
* * * *
74785420 ACTAAGTACAGGCTACTACGTTTACCAGATTGATA
66 ACTAAGTACAAGCTACTACATGTACCAGATGGATA
* * * * * * *
74785455 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGTGTACTC-GTTAACTTTGA-TCACGTGTGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAG--AACGTTAAGTCACGTGTGT
** *
74785518 AGTACTAAGTACAAGCTACTACATGTATTAGATGGTTA
63 AGTACTAAGTACAAGCTACTACATGTACCAGATGGATA
*
74785556 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
74785589 AATGTACTAG
Statistics
Matches: 109, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
100 34 0.31
101 71 0.65
102 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (100 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAACGTTAAGTCACGTGTGTAGT
ACTAAGTACAAGCTACTACATGTACCAGATGGATA
Found at i:74785594 original size:50 final size:50
Alignment explanation
Indices: 74785355--74785638 Score: 257
Period size: 50 Copynumber: 5.7 Consensus size: 50
74785345 ATTCATTGTG
*
74785355 AGTCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTA-TCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATGGTTA
* * * * *
74785405 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTTTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
* * * * * * * **
74785455 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGTGTACTCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGAT-GGTTA
* * * * *
74785505 TGATCACGTGTGTAGTACTAAGTACAAGCTACTACATGTATTAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
* ** * * *
74785556 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTAAATGTACTAGATTGATC
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
* * * *
74785606 GGTCGCATGTGTAGAACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
74785639 TGCGTACCAG
Statistics
Matches: 184, Mismatches: 46, Indels: 8
0.77 0.19 0.03
Matches are distributed among these distances:
50 149 0.81
51 35 0.19
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
Found at i:74785631 original size:151 final size:151
Alignment explanation
Indices: 74785357--74785645 Score: 443
Period size: 151 Copynumber: 1.9 Consensus size: 151
74785347 TCATTGTGAG
* * *
74785357 TCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAAGCTAATACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
** * *
74785422 TAAGTACAGGCTACTACGTTTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAGGCTACT
66 TAAGTACAGGCTACTAAATGTACCAGATTGATAGGTCGCATGTGTAGAACTAAATGCAGGCTACT
*
74785487 ATGTGTACTCGTTAACTTTGA
131 ATGCGTACTCGTTAACTTTGA
* *
74785508 TCACGTGTGTAGTACTAAGTACAAGCTACTACATGTATTAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAAGCTAATACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
** * * *
74785573 TAAGTGTAGGCTACTAAATGTACTAGATTGATCGGTCGCATGTGTAGAACTAAGTGCAGGCTACT
66 TAAGTACAGGCTACTAAATGTACCAGATTGATAGGTCGCATGTGTAGAACTAAATGCAGGCTACT
74785638 ATGCGTAC
131 ATGCGTAC
74785646 CAGAGAGCTT
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 123 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTACAAGCTAATACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
TAAGTACAGGCTACTAAATGTACCAGATTGATAGGTCGCATGTGTAGAACTAAATGCAGGCTACT
ATGCGTACTCGTTAACTTTGA
Found at i:74785870 original size:16 final size:16
Alignment explanation
Indices: 74785849--74785880 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74785839 AGAATGGAGT
74785849 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
74785865 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
74785881 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Done.