Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 235 of 318
Found at i:74789331 original size:13 final size:13
Alignment explanation
Indices: 74789309--74789338 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
74789299 TTTAAACATA
74789309 ATTAAATATAATT
1 ATTAAATATAATT
*
74789322 ATTAATTATAATT
1 ATTAAATATAATT
74789335 ATTA
1 ATTA
74789339 GGGATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAAATATAATT
Found at i:74789718 original size:14 final size:14
Alignment explanation
Indices: 74789699--74789739 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
74789689 CTAGTTTCCA
*
74789699 GTTTAGAATTTATT
1 GTTTAGGATTTATT
*
74789713 GTTTAGGATTTAAT
1 GTTTAGGATTTATT
*
74789727 GCTTAGGATTTAT
1 GTTTAGGATTTAT
74789740 ATCTAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (14 bp):
GTTTAGGATTTATT
Found at i:74799746 original size:46 final size:46
Alignment explanation
Indices: 74799693--74800020 Score: 435
Period size: 46 Copynumber: 7.0 Consensus size: 46
74799683 AGTGTGCTCT
74799693 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
74799739 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
74799785 CTGATGTGAAATGTGTAAGACAATGGTTGAAAG-TACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
74799830 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
74799876 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
74799922 CATGGCAGCGTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 C-T-G-A---T---ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
74799977 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
74800021 TCATGTCAAA
Statistics
Matches: 253, Mismatches: 18, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
45 44 0.17
46 164 0.65
47 1 0.00
48 1 0.00
49 1 0.00
52 2 0.01
53 1 0.00
54 1 0.00
55 38 0.15
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:74799849 original size:91 final size:92
Alignment explanation
Indices: 74799693--74800020 Score: 426
Period size: 91 Copynumber: 3.5 Consensus size: 92
74799683 AGTGTGCTCT
* *
74799693 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
74799758 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
*
74799785 CTGATGTGAAATGTGTAAGACAATGGTTGAAAG-TACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
*
74799849 ACCATGGTTGAAAGATACCATGGCAGC
66 ACCATGGTTGAAAGATACCATGGCAAC
*
74799876 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACCATGGCAGCGTAACATGAA
1 CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACC-T-G-A---T---ATGAA
**
74799941 ATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
57 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
74799977 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACAATGGTTGAAAGATACCATGGCA
74800021 TCATGTCAAA
Statistics
Matches: 209, Mismatches: 16, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
91 87 0.42
92 44 0.21
93 1 0.00
94 1 0.00
95 1 0.00
98 1 0.00
100 1 0.00
101 73 0.35
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:74799950 original size:55 final size:55
Alignment explanation
Indices: 74799865--74799976 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
74799855 GTTGAAAGAT
* * ** *
74799865 ACCATGGCAGCCTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCA
1 ACCATGGCAGCCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
*
74799920 ACCATGGCAGCGTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
1 ACCATGGCAGCCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
74799975 AC
1 AC
74799977 ATGACAGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (55 bp):
ACCATGGCAGCCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
Found at i:74799995 original size:101 final size:101
Alignment explanation
Indices: 74799835--74800020 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 101
74799825 GCAACCTGAT
** * * * * *
74799835 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACTAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
* *
74799900 GGTTGAAAGATACCATGGCAACCATGGCAGCGTAAC
66 AGTTGAAAGACACCATGGCAACCATGGCAGCGTAAC
74799936 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCA
*
74800000 TAGTTGAAAGACACTATGGCA
65 TAGTTGAAAGACACCATGGCA
74800021 TCATGTCAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 1 0.01
101 73 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (101 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
AGTTGAAAGACACCATGGCAACCATGGCAGCGTAAC
Found at i:74803500 original size:43 final size:43
Alignment explanation
Indices: 74803448--74803573 Score: 173
Period size: 44 Copynumber: 2.9 Consensus size: 43
74803438 ATAAGATTCG
74803448 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
* * *
74803491 GATTTGTGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTT-CATGTAAGACCATGTCTGGGAC-GTTGGCATC
* * *
74803535 GATATGTGATTACATGTAAGACCATGCCTAGGACGTTGG
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGG
74803574 TGTTGTACAA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 32 0.45
44 37 0.52
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:74803520 original size:44 final size:44
Alignment explanation
Indices: 74803448--74803573 Score: 177
Period size: 43 Copynumber: 2.9 Consensus size: 44
74803438 ATAAGATTCG
74803448 GATATGTGATTT-CATGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGGCATC
* * *
74803491 GATTTGTGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTTACATGTAAGACCATGTCTGGGAC-GTTGGCATC
* *
74803535 GATATGTGA-TTACATGTAAGACCATGCCTAGGACGTTGG
1 GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGG
74803574 TGTTGTACAA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.01
43 35 0.49
44 35 0.49
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (44 bp):
GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:74807277 original size:79 final size:82
Alignment explanation
Indices: 74807100--74807317 Score: 220
Period size: 79 Copynumber: 2.7 Consensus size: 82
74807090 AAATCACGTA
* * ** * *
74807100 CCTTCGGAATTTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCC-GATTA
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATA
*
74807161 TAGTAACTTGCACAAATG
65 TAGTAACTCGCACAAATG
* *
74807179 CCTTCGGGACTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGAG-CTTAGCCCGGAAT-T
1 CCTTCGGGACTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATAT
*
74807241 AGTATCTCGCACAAATG
66 AGTAACTCGCACAAATG
** * * *
74807258 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
74807318 CATCATTCAA
Statistics
Matches: 115, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
78 3 0.03
79 66 0.57
80 46 0.40
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (82 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATAT
AGTAACTCGCACAAATG
Found at i:74807317 original size:40 final size:41
Alignment explanation
Indices: 74807133--74807317 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
74807123 GCTACTCGTT
*
74807133 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTTAGCA
* * *
74807173 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
74807213 CAAATGCCTTCGAG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* * *
74807252 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
74807293 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74807318 CATCATTCAA
Statistics
Matches: 119, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
38 1 0.01
39 29 0.24
40 75 0.63
41 14 0.12
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:74812357 original size:93 final size:93
Alignment explanation
Indices: 74812198--74812381 Score: 359
Period size: 93 Copynumber: 2.0 Consensus size: 93
74812188 CAAGGGATTC
74812198 GACACCCGAATTACGAACTCAGTAGACTCAATAGGCAAAGTCTTACTGGATGCTAAGGTTTCACA
1 GACACCCGAATTACGAACTCAGTAGACTCAATAGGCAAAGTCTTACTGGATGCTAAGGTTTCACA
74812263 TATGTAAGAATGAGTAGAACCGGGGTTT
66 TATGTAAGAATGAGTAGAACCGGGGTTT
*
74812291 GACACCCGAATTACGAACTCAGTAGACTCAATAGGTAAAGTCTTACTGGATGCTAAGGTTTCACA
1 GACACCCGAATTACGAACTCAGTAGACTCAATAGGCAAAGTCTTACTGGATGCTAAGGTTTCACA
74812356 TATGTAAGAATGAGTAGAACCGGGGT
66 TATGTAAGAATGAGTAGAACCGGGGT
74812382 CAATCAAAGC
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (93 bp):
GACACCCGAATTACGAACTCAGTAGACTCAATAGGCAAAGTCTTACTGGATGCTAAGGTTTCACA
TATGTAAGAATGAGTAGAACCGGGGTTT
Found at i:74815324 original size:79 final size:81
Alignment explanation
Indices: 74815213--74815394 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
74815203 GCTACTCGTT
* *
74815213 CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
74815277 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
74815293 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
74815356 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
74815373 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
74815395 AGACATCATT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:74815330 original size:39 final size:40
Alignment explanation
Indices: 74815213--74815394 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
74815203 GCTACTCGTT
*
74815213 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74815253 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
74815293 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74815332 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
74815373 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
74815395 AGACATCATT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.60
41 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74818631 original size:46 final size:46
Alignment explanation
Indices: 74818578--74818669 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
74818568 TTGAAATCCT
*
74818578 AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGTTTTTC
1 AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGCTTTTC
*
74818624 AGTTGCAAGAATTAACAGATAGAGGTTTCGTACGACCGAGCTTTTC
1 AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGCTTTTC
74818670 TCCCTGGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (46 bp):
AGTTGCAAGAATTAACAGATAGAGGTTTCGCACGACCGAGCTTTTC
Found at i:74821286 original size:26 final size:28
Alignment explanation
Indices: 74821224--74821280 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
74821214 AGCTACGTGG
74821224 AAGCCCAAAGATGCTATGAGAGAATGTT
1 AAGCCCAAAGATGCTATGAGAGAATGTT
74821252 AAGCCCAAAGATGCTATGAGAGAATGTT
1 AAGCCCAAAGATGCTATGAGAGAATGTT
74821280 A
1 A
74821281 CCCAAACCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (28 bp):
AAGCCCAAAGATGCTATGAGAGAATGTT
Found at i:74822636 original size:43 final size:43
Alignment explanation
Indices: 74822582--74822707 Score: 144
Period size: 44 Copynumber: 2.9 Consensus size: 43
74822572 ATAGGATTCT
* * *
74822582 GATATGTGATTTCGTGTAAGATCACATCTGGGACATTGGCATC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
* * ** *
74822625 GATTTTTGATTTACATGTAAGACCTTGTCTGGGACAGTGGCATC
1 GATATGTGATTT-CATGTAAGACCACGTCTGGGACATTGGCATC
* * *
74822669 GATATGTGATTACATGTAAGACCACGTTTGGGACGTTGG
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGG
74822708 TATTGTACGA
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
43 32 0.48
44 34 0.52
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:74822644 original size:44 final size:44
Alignment explanation
Indices: 74822582--74822707 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 44
74822572 ATAGGATTCT
* * *
74822582 GATATGTGATTT-CGTGTAAGATCACATCTGGGACATTGGCATC
1 GATATGTGATTTACATGTAAGACCACGTCTGGGACATTGGCATC
* * ** *
74822625 GATTTTTGATTTACATGTAAGACCTTGTCTGGGACAGTGGCATC
1 GATATGTGATTTACATGTAAGACCACGTCTGGGACATTGGCATC
* *
74822669 GATATGTGA-TTACATGTAAGACCACGTTTGGGACGTTGG
1 GATATGTGATTTACATGTAAGACCACGTCTGGGACATTGG
74822708 TATTGTACGA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 35 0.52
44 32 0.48
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (44 bp):
GATATGTGATTTACATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:74833508 original size:25 final size:27
Alignment explanation
Indices: 74833471--74833523 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
74833461 TCAAACATGC
74833471 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
74833497 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
74833523 A
1 A
74833524 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:74835041 original size:32 final size:32
Alignment explanation
Indices: 74835004--74835068 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
74834994 AATGCTTACC
*
74835004 ATGCCCATCATCTATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
74835036 ATGCCCATCATCCATTAACTTTTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
74835068 A
1 A
74835069 AATGCATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:74837783 original size:39 final size:39
Alignment explanation
Indices: 74837684--74837865 Score: 170
Period size: 39 Copynumber: 4.7 Consensus size: 39
74837674 CACATTCACT
* * *
74837684 TTTAAGCATATATC-CTATTACACATATAATCATC-TAACA
1 TTTAAGCATATATCAC-AATACTCAAATAATCA-CATAACA
*** **
74837723 TACCAGCATATATCACAATACTCAAATAATCATGTAACA
1 TTTAAGCATATATCACAATACTCAAATAATCACATAACA
* ** * *
74837762 TTTAAGTATATATCACAATACTCGTATACTCGCATAACA
1 TTTAAGCATATATCACAATACTCAAATAATCACATAACA
* **
74837801 TTTAAGCATATATCATAATACTCGTATAATCACATAACA
1 TTTAAGCATATATCACAATACTCAAATAATCACATAACA
* *
74837840 TTCAAGCATATATCCCAATACTCAAA
1 TTTAAGCATATATCACAATACTCAAA
74837866 AACATCTTTC
Statistics
Matches: 115, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 114 0.99
40 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCAAATAATCACATAACA
Found at i:74839462 original size:6 final size:6
Alignment explanation
Indices: 74839451--74839480 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
74839441 TAGCCCATTG
74839451 CAGTAT CAGTAT CAGTAT CAGTAT CAGTAT
1 CAGTAT CAGTAT CAGTAT CAGTAT CAGTAT
74839481 GGGCCTTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (6 bp):
CAGTAT
Found at i:74839807 original size:27 final size:27
Alignment explanation
Indices: 74839774--74839850 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
74839764 GTCATACATA
*
74839774 TCATAAGGGTATATCAGTCATTTTACC
1 TCATAAGGGTATAACAGTCATTTTACC
*
74839801 TCATAAGGGTATAACAGTCACTTTACC
1 TCATAAGGGTATAACAGTCATTTTACC
*
74839828 TCAT-AGGAGTATAGCAGTCATTT
1 TCATAAGG-GTATAACAGTCATTT
74839851 CATCAAATTG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 42 0.93
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (27 bp):
TCATAAGGGTATAACAGTCATTTTACC
Found at i:74841720 original size:39 final size:39
Alignment explanation
Indices: 74841572--74841795 Score: 193
Period size: 40 Copynumber: 5.6 Consensus size: 39
74841562 TTGAATGCTG
* * * * *
74841572 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGAATATA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGAT-ACTAAA
**
74841612 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
74841651 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* * **
74841692 TCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* * *
74841731 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACTAAA
* * *
74841770 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGT-CCGAAGGCATTTG
74841796 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 68 0.44
40 73 0.47
41 14 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:74841735 original size:79 final size:78
Alignment explanation
Indices: 74841572--74841793 Score: 230
Period size: 79 Copynumber: 2.8 Consensus size: 78
74841562 TTGAATGCTG
* * * * * * *
74841572 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAATGAATATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGAT-ACTAAATCCGGGCTAAG-TCCGAAGGCATTC
74841637 GTGCGAGATACAAAT
64 GTGCGAGATACAAAT
* *
74841652 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAAATCCGGGCTAAGTCCGAAGGCATTCG
* **
74841717 TGCGAGTTGTTAAA-
65 TGCGAGAT-ACAAAT
* * * * * *
74841731 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGT-CCGAAGGCATT
74841794 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
78 25 0.21
79 49 0.41
80 34 0.29
81 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCGAAGGCATTCGT
GCGAGATACAAAT
Found at i:74841813 original size:79 final size:78
Alignment explanation
Indices: 74841652--74841827 Score: 176
Period size: 79 Copynumber: 2.2 Consensus size: 78
74841642 AGATACAAAT
* * * *
74841652 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGTT-AGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCGAAGGCATTCG
** ** *
74841717 TGCGAGTTGTTAAA
65 AACGAGGAGCTAAA
* * * *
74841731 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTA-GTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGT-CCGAAGGCATTC
*
74841795 GAACGAGGAGCTATA
64 GAACGAGGAGCTAAA
*
74841810 TCC-GGTTAATCCCGAAGG
1 TCCGGGTTAGTCCCGAAGG
74841828 TACGTGATTT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
77 9 0.11
78 31 0.39
79 40 0.50
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCGAAGGCATTCGA
ACGAGGAGCTAAA
Found at i:74844373 original size:41 final size:41
Alignment explanation
Indices: 74844316--74844397 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
74844306 CCCCAAAACC
*
74844316 GAATGCATGAGTGCCTACAAACCCACTTCGACACCAACACT
1 GAATGCATGACTGCCTACAAACCCACTTCGACACCAACACT
74844357 GAATGCATGACTGCCTACAAACCCACTTCGACACCAACACT
1 GAATGCATGACTGCCTACAAACCCACTTCGACACCAACACT
74844398 CCCTCAACTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.34, C:0.35, G:0.13, T:0.17
Consensus pattern (41 bp):
GAATGCATGACTGCCTACAAACCCACTTCGACACCAACACT
Found at i:74863669 original size:26 final size:25
Alignment explanation
Indices: 74863603--74863681 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
74863593 ATGAAATTCC
74863603 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
74863628 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
74863653 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
74863678 ATCA
1 ATCA
74863682 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
24 14 0.27
25 24 0.46
26 14 0.27
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:74865144 original size:26 final size:26
Alignment explanation
Indices: 74865113--74865193 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
74865103 ATGAAATTCC
74865113 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74865139 ATCATGAAACATTTACCT-ACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
74865164 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74865190 ATCA
1 ATCA
74865194 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
25 23 0.45
26 28 0.55
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74865849 original size:25 final size:26
Alignment explanation
Indices: 74865805--74865874 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
74865795 TTTCTCATCC
* * * *
74865805 CAATTTTATCCTAG-TAAAATTTTGG
1 CAATTTTACCCTCGATAAATTTTTGA
74865830 CAATTTTACCCTCGATAAATTTTTGA
1 CAATTTTACCCTCGATAAATTTTTGA
*
74865856 CGATTTTACCCTCGATAAA
1 CAATTTTACCCTCGATAAA
74865875 ATTTCGAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 12 0.31
26 27 0.69
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (26 bp):
CAATTTTACCCTCGATAAATTTTTGA
Found at i:74870652 original size:46 final size:46
Alignment explanation
Indices: 74870599--74870722 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 46
74870589 TACGTGTGTC
* *
74870599 AGTGTAAGACATGTTTGGTACATGCATCGGCCACATT-G-TGAGAGCT
1 AGTGTAAGACATGTCTGG-ACATGCATCGGCC-CATTAGACGAGAGCT
74870645 AGTGTAAGACATGTCTGGGACATGCATCGG--CATTAAGACGAGAGCT
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCCATT-AGACGAGAGCT
*
74870691 AATGTAAGACATGTCTGAGACATGCATCGGCC
1 AGTGTAAGACATGTCTG-GACATGCATCGGCC
74870723 TCGAGATATA
Statistics
Matches: 68, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
43 4 0.06
45 2 0.03
46 60 0.88
47 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCCATTAGACGAGAGCT
Found at i:74870761 original size:48 final size:46
Alignment explanation
Indices: 74870599--74870767 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
74870589 TACGTGTGTC
* * * * *
74870599 AGTGTAAGACATGTTTGGTACATGCATCGGCCA-CATTG-TGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATCA-AGAAGAAAGCT
* * *
74870645 AGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGAAGAAAGCT
* * * * *
74870691 AATGTAAGACATGTCTGAGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGA-AGA-AAGCT
* *
74870739 AGTGTAAGACCTATCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
74870768 AGCTTGTTGT
Statistics
Matches: 101, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
45 3 0.03
46 69 0.68
47 1 0.01
48 23 0.23
49 5 0.05
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGAAGAAAGCT
Found at i:74870853 original size:49 final size:49
Alignment explanation
Indices: 74870785--74870909 Score: 135
Period size: 49 Copynumber: 2.6 Consensus size: 49
74870775 TGTGTGTCTA
* *
74870785 TGTAGGACCTGTTTGGGACATGGCATCAACAC-CAATAGATGAGAGCCAG
1 TGTAAGACCTGTTTGGGACATGGCATCAAC-CTCAATAGATGAAAGCCAG
* * *** * * *
74870834 TGTAAGACCTGTTTGGGACACGACATTGGCCTCTATATATGAAAGTCAG
1 TGTAAGACCTGTTTGGGACATGGCATCAACCTCAATAGATGAAAGCCAG
*
74870883 TGTAAGACCTGTCTGGGACATGGCATC
1 TGTAAGACCTGTTTGGGACATGGCATC
74870910 GACTTTGATG
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
48 1 0.02
49 60 0.98
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (49 bp):
TGTAAGACCTGTTTGGGACATGGCATCAACCTCAATAGATGAAAGCCAG
Found at i:74875237 original size:40 final size:40
Alignment explanation
Indices: 74875150--74875337 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
74875140 TATTCGGATG
* * * *
74875150 ATAACCGGGCTAAGT-CCAAAGGCATTTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74875189 A-ATTCCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
74875229 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74875269 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
74875309 ACAATCGGGCTAAGTCCTGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
74875338 AGTGAGTAGC
Statistics
Matches: 132, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 118 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74875282 original size:80 final size:80
Alignment explanation
Indices: 74875150--74875372 Score: 265
Period size: 80 Copynumber: 2.8 Consensus size: 80
74875140 TATTCGGATG
* * * *
74875150 ATAACCGGGCTAAGT-CCAAAGGCATTTGTGCTAATGACTA-ATTCCGGGCTAAGTCCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGT
* *
74875213 ATTTGTGCGAGTTACT
65 AATTGTGCAAGTTACT
* *
74875229 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
74875294 ATTGTGCAAGTTACT
66 ATTGTGCAAGTTACT
* * * * * **
74875309 ACAATCGGGCTAAGTCCTGAAGGCATTTGAGTGAG-TAGCTATATCC-GGCTAAACCCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGT
74875372 A
65 A
74875373 CTTGGTTGGG
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 32 0.26
80 91 0.73
81 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
ATTGTGCAAGTTACT
Found at i:74883302 original size:40 final size:40
Alignment explanation
Indices: 74883240--74883461 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 40
74883230 TATTCGGATG
* * * * *
74883240 ATAACCGGGCTAAGTCCTGAAGGTATTTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74883280 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74883320 ATAACCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
74883360 ATAACCGGGATAAGTCCCGAAGGCAATTGAGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
74883400 ACAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
74883440 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
74883462 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74887763 original size:68 final size:67
Alignment explanation
Indices: 74887690--74887839 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
74887680 CATCATGTGT
* * * *
74887690 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTTGCATGCGTGGATACAAGTGAAGGACACC
74887752 ATGTAG
62 ATGTAG
** * *
74887758 ACAAGAGAGCTACGGGATATATGTAGCTAGGTTGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTTGCATGCGTGGATACAAGTGAAGGACACCATGT
74887823 AG
66 AG
74887825 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
74887840 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTTGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:74887795 original size:64 final size:64
Alignment explanation
Indices: 74887714--74887897 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
74887704 AGACATTATG
* *
74887714 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74887778 ATGTAGCTAGGTTGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTTGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74887843 AA
63 AA
** * * *
74887845 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
74887898 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74893517 original size:48 final size:47
Alignment explanation
Indices: 74893414--74893722 Score: 252
Period size: 48 Copynumber: 6.6 Consensus size: 47
74893404 CGTGTGCCAA
* * * *
74893414 TGTAAGACATGTCTAGGACAGGCATTGG-C-C-ACAT-TACAAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAC-AA-CTAG
* * * *
74893459 TTTAAAACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-CAACTAG
* * * * * ** * *
74893507 TGTAAAACATGTCTAGGATATGCATCGGCATTGAGA-CGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAACTAG
* *
74893553 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACCAACCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-CAACTAG
* * * ** ** * *
74893601 TGTAAGACATGTCTGGGACATTCATCGACATTAAGA-CGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAACTAG
74893647 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA-CTAG
* *
74893695 TGTAAGACCTGTCTAGGACATGGCATCG
1 TGTAAGACATGTCTGGGACAT-GCATCG
74893723 ACACCAATAG
Statistics
Matches: 202, Mismatches: 52, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
45 23 0.11
46 69 0.34
47 6 0.03
48 93 0.46
49 10 0.05
50 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAACTAG
Found at i:74893572 original size:94 final size:94
Alignment explanation
Indices: 74893453--74893763 Score: 419
Period size: 94 Copynumber: 3.3 Consensus size: 94
74893443 CACATTACAA
* * * *
74893453 AGCTAGTTTAAAACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAATGTAAAACATG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAGTGTAAGACATG
* * *
74893518 TCTAGGATATGCATCGGCATTGAGACGAG
66 TCTAGGACATGCATCGACATTAAGACGAG
*
74893547 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACCAACCAGTGTAAGACATG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAGTGTAAGACATG
* *
74893612 TCTGGGACATTCATCGACATTAAGACGAG
66 TCTAGGACATGCATCGACATTAAGACGAG
* *
74893641 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-CAAGCTAGTGTAAGACCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAA-CCAGTGTAAGACAT
** *
74893705 GTCTAGGACATGGCATCGACACCAATAGATGAG
65 GTCTAGGACAT-GCATCGACA-TTA-AGACGAG
*
74893738 AGAC-AGTGTAAGACCTGTCTGGGACA
1 AG-CTAGTGTAAGACATGTCTGGGACA
74893764 CAGCATCAAC
Statistics
Matches: 193, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
93 3 0.02
94 151 0.78
95 8 0.04
96 1 0.01
97 29 0.15
98 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (94 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAGTGTAAGACATG
TCTAGGACATGCATCGACATTAAGACGAG
Found at i:74893749 original size:49 final size:48
Alignment explanation
Indices: 74893645--74893822 Score: 157
Period size: 49 Copynumber: 3.6 Consensus size: 48
74893635 GACGAGAGCT
* * * * *
74893645 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAG-C
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCAATAGATGA-AAGAC
*
74893692 TAGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CAATAGATGAGAGAC
1 -AGTGTAAGACCTGTCT-GGACATGGCATCGAC-CTCAATAGATGAAAGAC
** * * * *
74893742 AGTGTAAGACCTGTCTGGGACACAGCATCAACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCAATAGATGAAAGAC
74893791 AGTGTAAGACCTGTCTGGCACATGGCATCGAC
1 AGTGTAAGACCTGTCTGG-ACATGGCATCGAC
74893823 TTTGATGTAC
Statistics
Matches: 106, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
48 24 0.23
49 79 0.75
50 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGACATGGCATCGACCTCAATAGATGAAAGAC
Found at i:74898833 original size:20 final size:20
Alignment explanation
Indices: 74898798--74898846 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
74898788 CAAAGTGTAT
* * *
74898798 ACAGAGGCATTGAAGTATAA
1 ACAGAGGCAATAAAGTACAA
74898818 ACAGAGGCAATAAAGTACAA
1 ACAGAGGCAATAAAGTACAA
74898838 ACAGAGGCA
1 ACAGAGGCA
74898847 CCAAAGTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.12
Consensus pattern (20 bp):
ACAGAGGCAATAAAGTACAA
Found at i:74898852 original size:20 final size:20
Alignment explanation
Indices: 74898810--74898858 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
74898800 AGAGGCATTG
* *
74898810 AAGTATAAACAGAGGCAATA
1 AAGTACAAACAGAGGCAACA
*
74898830 AAGTACAAACAGAGGCACCA
1 AAGTACAAACAGAGGCAACA
*
74898850 AAGTGCAAA
1 AAGTACAAA
74898859 TCCCGTACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.16, G:0.20, T:0.10
Consensus pattern (20 bp):
AAGTACAAACAGAGGCAACA
Found at i:74914034 original size:26 final size:26
Alignment explanation
Indices: 74914005--74914112 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74913995 TGGTACAAAT
74914005 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74914031 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74914057 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74914083 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74914109 TGAT
1 TGAT
74914113 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74915729 original size:25 final size:22
Alignment explanation
Indices: 74915664--74915717 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
74915654 CATGTTTGAC
74915664 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
74915686 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
74915708 TGTTGTTATT
1 TGTTGTTATT
74915718 ATCTGATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.17, C:0.15, G:0.19, T:0.50
Consensus pattern (22 bp):
TGTTGTTATTTACTGCATGCCA
Found at i:74916949 original size:65 final size:65
Alignment explanation
Indices: 74916856--74916995 Score: 201
Period size: 65 Copynumber: 2.2 Consensus size: 65
74916846 ACTACCGCAA
*** *
74916856 CTCTTTGTGAACGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTGCAAACACAAATGCAG
1 CTCTTTGTGAACGTCCTGTTATATGATCGACAGTGATCCTACATATATTGCAAACACAAATGCAG
* * *
74916921 CTCTTTGT-AAGCGTCTTGTTTTATGATCGACAGTGATCCTACATATATTGCGAACACAAATGCA
1 CTCTTTGTGAA-CGTCCTGTTATATGATCGACAGTGATCCTACATATATTGCAAACACAAATGCA
74916985 G
65 G
74916986 CTCTTTGTGA
1 CTCTTTGTGA
74916996 GTGTCCTGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
64 2 0.03
65 63 0.95
66 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (65 bp):
CTCTTTGTGAACGTCCTGTTATATGATCGACAGTGATCCTACATATATTGCAAACACAAATGCAG
Found at i:74917060 original size:24 final size:26
Alignment explanation
Indices: 74917020--74917101 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
74917010 CTCGCTTGAA
*
74917020 CTTCCTGA-TATATGGCTATTCG-GAG
1 CTTCCTGATTA-AAGGCTATTCGTGAG
*
74917045 C-TCCTGATTAAAGGCTCTTCGTGAG
1 CTTCCTGATTAAAGGCTATTCGTGAG
* * * *
74917070 CTTCCTGATTAAAAGTTATTTGTGAA
1 CTTCCTGATTAAAGGCTATTCGTGAG
74917096 CTTCCT
1 CTTCCT
74917102 AAATATGGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
24 15 0.32
25 7 0.15
26 25 0.53
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
CTTCCTGATTAAAGGCTATTCGTGAG
Found at i:74917079 original size:26 final size:25
Alignment explanation
Indices: 74917020--74917082 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 25
74917010 CTCGCTTGAA
*
74917020 CTTCCTGA-TATATGGCTATTCGGAG
1 CTTCCTGATTA-AAGGCTATTCGGAG
*
74917045 C-TCCTGATTAAAGGCTCTTCGTGAG
1 CTTCCTGATTAAAGGCTATTCG-GAG
74917070 CTTCCTGATTAAA
1 CTTCCTGATTAAA
74917083 AGTTATTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 15 0.45
25 7 0.21
26 11 0.33
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (25 bp):
CTTCCTGATTAAAGGCTATTCGGAG
Found at i:74917162 original size:25 final size:26
Alignment explanation
Indices: 74917134--74917189 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
74917124 CTATTATAAA
*
74917134 GCTCGA-ATAAGCTTCCTGTTACATG
1 GCTCGACATAAGCTTCCGGTTACATG
* * *
74917159 GCTC-ACTTGAGCTTCCGGTTATATG
1 GCTCGACATAAGCTTCCGGTTACATG
74917184 GCTCGA
1 GCTCGA
74917190 GAGAGTGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 23 0.92
26 1 0.04
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (26 bp):
GCTCGACATAAGCTTCCGGTTACATG
Found at i:74925752 original size:204 final size:204
Alignment explanation
Indices: 74925402--74925801 Score: 800
Period size: 204 Copynumber: 2.0 Consensus size: 204
74925392 GACACTTTTG
74925402 AAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGTT
1 AAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGTT
74925467 TTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGATT
66 TTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGATT
74925532 TAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCCA
131 TAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCCA
74925597 GAACGCCCT
196 GAACGCCCT
74925606 AAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGTT
1 AAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGTT
74925671 TTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGATT
66 TTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGATT
74925736 TAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCCA
131 TAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCCA
74925801 G
196 G
74925802 CTAGTCTAGT
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 196 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (204 bp):
AAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGTT
TTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGATT
TAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCCA
GAACGCCCT
Found at i:74926788 original size:31 final size:31
Alignment explanation
Indices: 74926738--74926803 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
74926728 AACCCTTCTT
* * *
74926738 GCATTAAATCCAACTAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
* *
74926769 GCATGAAATCGAACCAAAAACAACAAATGTA
1 GCATGAAATCCAACCAAAAACAACAAATATA
74926800 GCAT
1 GCAT
74926804 AAAAAATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.53, C:0.20, G:0.11, T:0.17
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAACAAATATA
Found at i:74927540 original size:13 final size:14
Alignment explanation
Indices: 74927514--74927542 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
74927504 ACTAAAGAAG
74927514 AATTAAACCATTAT
1 AATTAAACCATTAT
74927528 AATTAAA-CATTAT
1 AATTAAACCATTAT
74927541 AA
1 AA
74927543 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:74930275 original size:15 final size:15
Alignment explanation
Indices: 74930252--74930283 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
74930242 AAATAATAAT
74930252 TTATATATATTTATC
1 TTATATATATTTATC
*
74930267 TTATTTATATTTATC
1 TTATATATATTTATC
74930282 TT
1 TT
74930284 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:74930316 original size:7 final size:7
Alignment explanation
Indices: 74930306--74930377 Score: 72
Period size: 7 Copynumber: 10.3 Consensus size: 7
74930296 CCAAAATTAT
74930306 ACCCTAA
1 ACCCTAA
*
74930313 ACCCGAA
1 ACCCTAA
*
74930320 ACCTTAA
1 ACCCTAA
*
74930327 ACCTTAA
1 ACCCTAA
* *
74930334 ACTCAAA
1 ACCCTAA
* *
74930341 ATCCTAC
1 ACCCTAA
*
74930348 ACCTTAA
1 ACCCTAA
74930355 ACCCTAA
1 ACCCTAA
74930362 ACCCTAA
1 ACCCTAA
74930369 ACCCTAA
1 ACCCTAA
74930376 AC
1 AC
74930378 TCACTACACC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 51 1.00
ACGTcount: A:0.43, C:0.38, G:0.01, T:0.18
Consensus pattern (7 bp):
ACCCTAA
Found at i:74930459 original size:39 final size:39
Alignment explanation
Indices: 74930416--74930490 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
74930406 CGTTTGAATG
74930416 AAAAACGCCACTAAAGAAT-GAGTATTAGCAGCACTTCTC
1 AAAAACGCCACTAAAG-ATGGAGTATTAGCAGCACTTCTC
** *
74930455 AAAAACGCTGCTAAAGATGGAGTATTAGCTGCACTT
1 AAAAACGCCACTAAAGATGGAGTATTAGCAGCACTT
74930491 TTTTTTAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.06
39 30 0.94
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (39 bp):
AAAAACGCCACTAAAGATGGAGTATTAGCAGCACTTCTC
Found at i:74930726 original size:115 final size:114
Alignment explanation
Indices: 74930578--74930818 Score: 401
Period size: 115 Copynumber: 2.1 Consensus size: 114
74930568 GCGTTTTTCA
* *
74930578 AAAAACGCCGCAAAAGAATTTTGCAAAATGACGTTGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
1 AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
74930643 GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCGCTTTTTT
66 GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGC-CTTTTTT
* *
74930693 AAAAACACCGCAAAAGAATTTTTCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
1 AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
* * *
74930758 GGCGCTTTTCAAAAACGCCGCTAAAGATCGAGTATTAGCGGCTTTTTTT
66 GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCCTTTTTT
74930807 AAGAAACGCCGC
1 AA-AAACGCCGC
74930819 TATAAGTATA
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
114 8 0.07
115 109 0.93
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (114 bp):
AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCCTTTTTT
Found at i:74931164 original size:21 final size:21
Alignment explanation
Indices: 74931139--74931198 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
74931129 GTTTAAAGGT
*
74931139 GGTTTAAGGGTTGGGGTTTAA
1 GGTTTAAGGGTTAGGGTTTAA
74931160 GGTTT-AGGTGTTAGGGTTTAA
1 GGTTTAAGG-GTTAGGGTTTAA
* *
74931181 GGGTTATGGGTTAAGGGT
1 GGTTTAAGGGTT-AGGGT
74931199 GAGGGGTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 3 0.09
21 23 0.70
22 7 0.21
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.38
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGTTTAA
Found at i:74931177 original size:14 final size:14
Alignment explanation
Indices: 74931160--74931266 Score: 51
Period size: 14 Copynumber: 7.5 Consensus size: 14
74931150 TGGGGTTTAA
74931160 GGTTTAGGTGTTAG
1 GGTTTAGGTGTTAG
74931174 GGTTTAAGG-GTTATG
1 GGTTT-AGGTGTTA-G
* *
74931189 GGTTAAGG-GTGAGG
1 GGTTTAGGTGTTA-G
*
74931203 GGTTTATGGT-TCAG
1 GGTTTA-GGTGTTAG
* *
74931217 GGTTTATGTTTTAG
1 GGTTTAGGTGTTAG
* *
74931231 GATTTAAAGT-TTAG
1 GGTTT-AGGTGTTAG
* *
74931245 GGATTAGGAGTTTAG
1 GGTTTAGGTG-TTAG
74931260 GGTTTAG
1 GGTTTAG
74931267 ATTAGTTAGT
Statistics
Matches: 71, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
13 4 0.06
14 42 0.59
15 25 0.35
ACGTcount: A:0.21, C:0.01, G:0.38, T:0.40
Consensus pattern (14 bp):
GGTTTAGGTGTTAG
Found at i:74931740 original size:14 final size:14
Alignment explanation
Indices: 74931708--74931742 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
74931698 TTAAAAATTT
*
74931708 AAAAATAAAAAATA
1 AAAAATAAAAAACA
74931722 AAAAATAAAAAACA
1 AAAAATAAAAAACA
74931736 TAAAAAT
1 -AAAAAT
74931743 TTAATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAATAAAAAACA
Found at i:74931741 original size:8 final size:7
Alignment explanation
Indices: 74931708--74931733 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74931698 TTAAAAATTT
74931708 AAAAATA
1 AAAAATA
74931715 AAAAATA
1 AAAAATA
74931722 AAAAATA
1 AAAAATA
74931729 AAAAA
1 AAAAA
74931734 CATAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:74931930 original size:41 final size:41
Alignment explanation
Indices: 74931865--74931950 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
74931855 AAAAAAAATC
* *
74931865 AAAATTGAGCAATAATGGCATTTTTGA-GCAAAACGCCACAA
1 AAAATTGAACAATAATGGCATTTTT-ATGAAAAACGCCACAA
* * * *
74931906 AAAATTGAACTATAGTGGCGTTTTTATTAAAAACGCCACAA
1 AAAATTGAACAATAATGGCATTTTTATGAAAAACGCCACAA
74931947 AAAA
1 AAAA
74931951 CTATTATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 1 0.03
41 37 0.97
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.24
Consensus pattern (41 bp):
AAAATTGAACAATAATGGCATTTTTATGAAAAACGCCACAA
Found at i:74934036 original size:48 final size:48
Alignment explanation
Indices: 74933984--74934207 Score: 274
Period size: 48 Copynumber: 4.7 Consensus size: 48
74933974 GTCGAGGTCA
* * *
74933984 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTTTCAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
* * * * * *
74934032 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
* * * *
74934080 ATGCCATGTCCCGGACATGGTTTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
*
74934128 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AATGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAA--T-GCCG
74934176 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
74934208 ACACATATTA
Statistics
Matches: 151, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 1 0.01
48 147 0.97
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
Found at i:74934110 original size:96 final size:96
Alignment explanation
Indices: 74933946--74934207 Score: 373
Period size: 96 Copynumber: 2.7 Consensus size: 96
74933936 GATACCATAT
* * *
74933946 CCAGATATGGTCTTACACTGGCTCACATGTCGAGGTCAATGCCATGTCCCAAACATGGTCTTACA
1 CCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
* *
74934011 CTAGCTCTCGTTTCAATACCGATGCCATGTC
66 CTAGCTCTCGTCTCAATACCAATGCCATGTC
* * * * *
74934042 CCAGACATGGTCTTACATTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACATGGTTTTACA
1 CCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
*
74934107 CTAGCTCTCGTCTCAATGCCAATGCCATGTC
66 CTAGCTCTCGTCTCAATACCAATGCCATGTC
* * * *
74934138 CCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGTCGATGCCATGTCCCAGACATGGTCTTAC
1 CCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGTCGATGCCATGTCCCAGACATGGTCTTAC
74934202 ACTAGC
65 ACTAGC
74934208 ACACATATTA
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
96 144 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
CCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCGTCTCAATACCAATGCCATGTC
Found at i:74939178 original size:93 final size:93
Alignment explanation
Indices: 74939066--74939237 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74939056 CGCCCATAAG
* *
74939066 CGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74939131 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
74939159 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74939224 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74939238 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74939234 original size:46 final size:46
Alignment explanation
Indices: 74939059--74939234 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74939049 TGTAACCCGC
* * *
74939059 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74939105 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
74939155 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74939198 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74939235 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74940768 original size:20 final size:20
Alignment explanation
Indices: 74940743--74940782 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
74940733 TTAGGTTGAC
74940743 TTAGTCACTTTTTCAGCGAA
1 TTAGTCACTTTTTCAGCGAA
74940763 TTAGTCACTTTTTCAGCGAA
1 TTAGTCACTTTTTCAGCGAA
74940783 AAAATTGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (20 bp):
TTAGTCACTTTTTCAGCGAA
Found at i:74941815 original size:30 final size:30
Alignment explanation
Indices: 74941779--74941835 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
74941769 CATATTTCAT
74941779 ATTTCATAACACTGGGCCGAAGCCTTTTAA
1 ATTTCATAACACTGGGCCGAAGCCTTTTAA
**
74941809 ATTTCATATTACTGGGCCGAAGCCTTT
1 ATTTCATAACACTGGGCCGAAGCCTTT
74941836 ACTGTGAACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (30 bp):
ATTTCATAACACTGGGCCGAAGCCTTTTAA
Found at i:74942092 original size:23 final size:23
Alignment explanation
Indices: 74942028--74942191 Score: 224
Period size: 23 Copynumber: 7.0 Consensus size: 23
74942018 TGCTTTATCA
*
74942028 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
74942052 TAATAACTGGGGCA-AAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
74942075 TATAACTAGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
74942098 AATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
74942121 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
74942144 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
* *
74942168 AATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
74942191 T
1 T
74942192 CACTTCTCCA
Statistics
Matches: 126, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
22 11 0.09
23 77 0.61
24 30 0.24
25 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:74942157 original size:70 final size:69
Alignment explanation
Indices: 74942029--74942191 Score: 258
Period size: 70 Copynumber: 2.3 Consensus size: 69
74942019 GCTTTATCAT
*
74942029 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTATAACTAGGGCATAAGC
1 ATAACTGG-GGCGTAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTATAACTAGGGCATAAGC
74942093 CCTTTA
64 CCTTTA
*
74942099 ATAACTGGGGCGTAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTT-ATAACTAGGGCATAAGC
74942163 CCTTTA
64 CCTTTA
74942169 ATAACTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCGTAAGCCCTTTT
74942192 CACTTCTCCA
Statistics
Matches: 88, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
68 12 0.14
69 19 0.22
70 57 0.65
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (69 bp):
ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTTATAACTAGGGCATAAGCCC
TTTA
Found at i:74942173 original size:47 final size:47
Alignment explanation
Indices: 74942028--74942191 Score: 235
Period size: 47 Copynumber: 3.5 Consensus size: 47
74942018 TGCTTTATCA
*
74942028 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT
* *
74942075 TATAACTAGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
74942121 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
* *
74942168 AATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
74942192 CACTTCTCCA
Statistics
Matches: 106, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
45 15 0.14
46 33 0.31
47 58 0.55
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:74942264 original size:20 final size:20
Alignment explanation
Indices: 74942239--74942305 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74942229 TTATGAATAC
74942239 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74942259 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74942279 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74942299 ACCATGT
1 ATCATGT
74942306 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74942270 original size:11 final size:11
Alignment explanation
Indices: 74942239--74942294 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74942229 TTATGAATAC
74942239 ATCATGTGCAT
1 ATCATGTGCAT
*
74942250 ATCA--TACAT
1 ATCATGTGCAT
74942259 ATCATGTGCAT
1 ATCATGTGCAT
*
74942270 ATCA--TACAT
1 ATCATGTGCAT
*
74942279 GTCATGTGCAT
1 ATCATGTGCAT
74942290 ATCAT
1 ATCAT
74942295 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74950166 original size:23 final size:23
Alignment explanation
Indices: 74950102--74950263 Score: 206
Period size: 23 Copynumber: 7.0 Consensus size: 23
74950092 TGCTTTATCA
*
74950102 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
74950126 TAATAACTGGGGCA-AAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
74950149 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
74950172 AATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
74950195 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
74950218 TGATAACT-GGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
* *
74950241 AATAACT-GGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
74950263 T
1 T
74950264 CACTTCCCCC
Statistics
Matches: 126, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
22 32 0.25
23 72 0.57
24 14 0.11
25 8 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:74950337 original size:20 final size:20
Alignment explanation
Indices: 74950312--74950378 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74950302 TTATGAATAC
74950312 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74950332 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74950352 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74950372 ACCATGT
1 ATCATGT
74950379 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74950343 original size:11 final size:11
Alignment explanation
Indices: 74950312--74950367 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74950302 TTATGAATAC
74950312 ATCATGTGCAT
1 ATCATGTGCAT
*
74950323 ATCA--TACAT
1 ATCATGTGCAT
74950332 ATCATGTGCAT
1 ATCATGTGCAT
*
74950343 ATCA--TACAT
1 ATCATGTGCAT
*
74950352 GTCATGTGCAT
1 ATCATGTGCAT
74950363 ATCAT
1 ATCAT
74950368 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74950447 original size:25 final size:25
Alignment explanation
Indices: 74950415--74950462 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
74950405 ATACATAAAC
* *
74950415 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
74950440 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
74950463 AATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:74954669 original size:126 final size:129
Alignment explanation
Indices: 74954456--74955108 Score: 537
Period size: 141 Copynumber: 4.8 Consensus size: 129
74954446 GACAAAGCTG
* * * * * *
74954456 ACTCTTATTTAAGCGTTGCCTGAAGCATGCATATCCCAACCCGTATAGAAAGAGTTGACCAAAGC
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
* * * *
74954521 GTATGTCGGCAAGTCTATCCCAACACTT-TGGAAAA-TGTCTTCTTAGGACTGGAC-AAAGCCA
66 GTATGTTGGCAAGTCTATCCCAACACTTATGGAAAAGTGTCATCTTAGGGCTAGACAAAAGCCA
* * * * *
74954582 ACTCTTATTGAAGCGTTGGCTTAGGCATGCATACCCCAACCC-TCATACAAAGAGTTGGCCAGAG
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCAT-ATACAAAGAGTTGGCCAAAG
* * *
74954646 CGTATGTTGACAAGTCTATCCCAAGACTTAGGAAAATGTCGCCCAAAAGTGTCGTCTTAGGGCTA
65 CGTATGTTGGCAAGTCTATCCCAACACTT------ATG--G---AAAAGTGTCATCTTAGGGCTA
74954711 GACAAAAGCCA
119 GACAAAAGCCA
* * * *
74954722 ACTCTTATTTAAGTGTTGTCTTAGGCATACATATCTCAACCCATATGCAAAGAGTTGGCCAAAGC
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
* **
74954787 GTATGTTGGCAAGTCTATCCCATTACTTAGGAAATTATCACCCTAAAAGTGTCATCTTAGGGCTA
66 GTATGTTGGCAAGTCTATCCCA--AC------ACTTAT----GGAAAAGTGTCATCTTAGGGCTA
74954852 GACAAAAGCCA
119 GACAAAAGCCA
* * *
74954863 ACTTTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAAA
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCC-AAAG
* *
74954928 CGTATGTTGGCAAGTCTATCCTAACACTTAGGAAAGTGCCGCCCCAAAAGTGTCATCTTAGGACT
65 CGTATGTTGGCAAGTCTATCCCAACACTT-----A-TG--G----AAAAGTGTCATCTTAGGGCT
* *
74954993 AGTC-AAATCCA
118 AGACAAAAGCCA
* * * ** * * *
74955004 ACTTTTATTTAAGCATTGCCTTAGGCATGCATATTACAACCCTTATACAAAAAGTTGGCCAAAGT
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
* * *
74955069 TTATGTTGGCCAGTCTATCCCAATACTTA-GG-AAAGTGTCA
66 GTATGTTGGCAAGTCTATCCCAACACTTATGGAAAAGTGTCA
74955109 CCTCAAATTT
Statistics
Matches: 433, Mismatches: 53, Indels: 82
0.76 0.09 0.14
Matches are distributed among these distances:
125 1 0.00
126 89 0.21
131 1 0.00
133 3 0.01
134 3 0.01
135 2 0.00
138 4 0.01
139 17 0.04
140 113 0.26
141 147 0.34
142 50 0.12
148 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (129 bp):
ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
GTATGTTGGCAAGTCTATCCCAACACTTATGGAAAAGTGTCATCTTAGGGCTAGACAAAAGCCA
Found at i:74954733 original size:266 final size:267
Alignment explanation
Indices: 74954181--74955108 Score: 810
Period size: 265 Copynumber: 3.4 Consensus size: 267
74954171 CATACTATTG
* * * * * *
74954181 GACAAAGCCAACTCTTATTTAAGTGTTACCTTAGACATGCATAT-ACCAACTCTTATAAAAAGAG
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCA-CAACCCATATAGAAAGAG
** * ** * * *** * * * *
74954245 TTGGCCAAAGTATATGTTGACAAGTCTATCTTAATAC-TTAGAAAAGTGTTGGCATAATG-TTGG
65 TTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAA-TGTCATC-TTAGGACTAG
* * * * * *** * * * * *
74954308 AC-AATGCCGACTCTTATTTAAGCATTGCCTTAAGCATGGGTATCACAA-CTTTATACAAAGTGT
128 ACAAAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCCTCATACAAAGAGT
* * * * * *
74954371 TGGCCAAAGTGTATGTTGGCAAATCTATCCCAACATTTAGGAAATTGTCGCCCCAAAAGTGTAGG
193 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGCCCCAAAAGTGTCGT
* * * *
74954436 CATAGTGTTG
258 CTTAGGGCTA
** * * * *
74954446 GACAAAGCTGACTCTTATTTAAGCGTTGCCTGAAGCATGCATATCCCAACCCGTATAGAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAGAAAGAGT
* * * *
74954511 TGACCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTTGGAAAATGTCTTCTTAGGACTGGAC-
66 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAATGTCATCTTAGGACTAGACA
* *
74954575 AAAGCCAACTCTTATTGAAGCGTTGGCTTAGGCATGCATACCCCAACCCTCATACAAAGAGTTGG
131 AAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCCTCATACAAAGAGTTGG
* * *
74954640 CCAGAGCGTATGTTGACAAGTCTATCCCAAGACTTAGGAAAATGTCG-CCCAAAAGTGTCGTCTT
196 CCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGCCCCAAAAGTGTCGTCTT
74954704 AGGGCTA
261 AGGGCTA
* * * *
74954711 GACAAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATACATATCTCAACCCATAT-GCAAAGA
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAG-AAAGA
* **
74954775 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCATTACTTAGGAAATTATCACCCTAAAAGTGTC
64 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCA--AC------ACTT-T----GGAAAA-TGTC
* * * *
74954840 ATCTTAGGGCTAGACAAAAGCCAACTTTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCC
115 ATCTTAGGACTAGACAAAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCC
* * * * *
74954905 TTATACAAAGAGTTGGCCAAAAACGTATGTTGGCAAGTCTATCCTAACACTTAGGAAAGTGCCGC
180 TCATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGC
* *
74954970 CCCAAAAGTGTCATCTTAGGACTA
244 CCCAAAAGTGTCGTCTTAGGGCTA
* * * * * * * *
74954994 GTCAAATCCAACTTTTATTTAAGCATTGCCTTAGGCATGCATATTACAACCCTTATACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAGAAAGAGT
** * * * *
74955059 TGGCCAAAGTTTATGTTGGCCAGTCTATCCCAATACTTAGGAAAGTGTCA
66 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAATGTCA
74955109 CCTCAAATTT
Statistics
Matches: 534, Mismatches: 105, Indels: 45
0.78 0.15 0.07
Matches are distributed among these distances:
264 3 0.01
265 148 0.28
266 143 0.27
268 7 0.01
269 3 0.01
274 6 0.01
275 1 0.00
279 4 0.01
280 17 0.03
281 61 0.11
282 117 0.22
283 24 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (267 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAGAAAGAGT
TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAATGTCATCTTAGGACTAGACA
AAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCCTCATACAAAGAGTTGG
CCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGCCCCAAAAGTGTCGTCTT
AGGGCTA
Found at i:74954763 original size:140 final size:139
Alignment explanation
Indices: 74954552--74955133 Score: 707
Period size: 140 Copynumber: 4.2 Consensus size: 139
74954542 AACACTTTGG
* * * * * *
74954552 AAAA-TGTCTTCTTAGGACTGGACAAAGCCAACTCTTATTGAAGCGTTGGCTTAGGCATGCATAC
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
* * * *
74954616 CCCAACCCTCATACAAAGAGTTGGCCAGAGCGTATGTTGACAAGTCTATCCCAAGACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
* *
74954681 ATGTCGCCC
131 GTGTCACCC
* * * *
74954690 AAAAGTGTCGTCTTAGGGCTAGACAAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATACATA
1 AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATA
* * * *
74954755 TCTCAACCCATATGCAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCATTACTTAGGAA
65 TCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAA
* *
74954820 ATTATCACCC
130 AGTGTCACCC
* *
74954830 TAAAAGTGTCATCTTAGGGCTAGACAAAAGCCAACTTTTATTTAAGCGTTGCCTTAGGCATACAT
1 -AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACAT
* * *
74954895 ATCCCAACCCTTATACAAAGAGTTGGCCAAAAACGTATGTTGGCAAGTCTATCCTAACACTTAGG
64 ATCCCAACCCTTATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGG
* *
74954960 AAAGTGCCGCCCC
128 AAAGTGTC-ACCC
* * * * *
74954973 AAAAGTGTCATCTTAGGACTAGTCAAATCCAACTTTTATTTAAGCATTGCCTTAGGCATGCATAT
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
** * ** *
74955038 TACAACCCTTATACAAAAAGTTGGCCAAAGTTTATGTTGGCCAGTCTATCCCAATACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
74955103 GTGTCACCTC
131 GTGTCACC-C
** * *
74955113 AAATTTGTCGTCTTAAGACTA
1 AAAAGTGTCATCTTAGGACTA
74955134 TTTTGTTACA
Statistics
Matches: 384, Mismatches: 54, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
138 4 0.01
139 18 0.05
140 154 0.40
141 146 0.38
142 59 0.15
143 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (139 bp):
AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
GTGTCACCC
Found at i:74954892 original size:141 final size:139
Alignment explanation
Indices: 74954552--74955107 Score: 700
Period size: 141 Copynumber: 4.0 Consensus size: 139
74954542 AACACTTTGG
* * * * * *
74954552 AAAA-TGTCTTCTTAGGACTGGACAAAGCCAACTCTTATTGAAGCGTTGGCTTAGGCATGCATAC
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
* * * *
74954616 CCCAACCCTCATACAAAGAGTTGGCCAGAGCGTATGTTGACAAGTCTATCCCAAGACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
74954681 ATGTCGCCC
131 ATGTCGCCC
* * * *
74954690 AAAAGTGTCGTCTTAGGGCTAGACAAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATACATA
1 AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATA
* * * *
74954755 TCTCAACCCATATGCAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCATTACTTAGGAA
65 TCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAA
* * *
74954820 ATTATCACCC
130 AATGTCGCCC
* *
74954830 TAAAAGTGTCATCTTAGGGCTAGACAAAAGCCAACTTTTATTTAAGCGTTGCCTTAGGCATACAT
1 -AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACAT
* * *
74954895 ATCCCAACCCTTATACAAAGAGTTGGCCAAAAACGTATGTTGGCAAGTCTATCCTAACACTTAGG
64 ATCCCAACCCTTATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGG
* *
74954960 AAAGTGCCGCCCC
128 AAAATGTCG-CCC
* * * * *
74954973 AAAAGTGTCATCTTAGGACTAGTCAAATCCAACTTTTATTTAAGCATTGCCTTAGGCATGCATAT
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
** * ** *
74955038 TACAACCCTTATACAAAAAGTTGGCCAAAGTTTATGTTGGCCAGTCTATCCCAATACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
*
74955103 GTGTC
131 ATGTC
74955108 ACCTCAAATT
Statistics
Matches: 364, Mismatches: 49, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
138 4 0.01
139 16 0.04
140 136 0.37
141 146 0.40
142 59 0.16
143 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (139 bp):
AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
ATGTCGCCC
Found at i:74957673 original size:11 final size:11
Alignment explanation
Indices: 74957659--74957734 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
74957649 GATAATCACT
74957659 TTAATATTAAA
1 TTAATATTAAA
74957670 TTAATA--AAA
1 TTAATATTAAA
*
74957679 -TACTATTAAA
1 TTAATATTAAA
*
74957689 ATAAGTATTAAA
1 TTAA-TATTAAA
74957701 TTAA-ATTTAATA
1 TTAATA-TTAA-A
74957713 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
74957726 ATAATATTA
1 TTAATATTA
74957735 TTTTTTGGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 4 0.08
11 17 0.33
12 15 0.29
13 4 0.08
14 4 0.08
15 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:74957687 original size:25 final size:25
Alignment explanation
Indices: 74957633--74957699 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
74957623 AAACATTAAA
*
74957633 TTTAATATAATATTAAGATAATCAC
1 TTTAATATAATATTAAGAAAATCAC
*
74957658 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAATA-TAATATTAAGAAAATCAC
*
74957682 TATTAAAATAAGTATTAA
1 T-TTAATATAA-TATTAA
74957700 ATTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 6 0.17
25 21 0.60
26 8 0.23
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.40
Consensus pattern (25 bp):
TTTAATATAATATTAAGAAAATCAC
Found at i:74959228 original size:40 final size:41
Alignment explanation
Indices: 74959181--74959366 Score: 234
Period size: 41 Copynumber: 4.6 Consensus size: 41
74959171 CTCGCACAAG
* * * * *
74959181 GCCTTCGGGTCTTAACCCGGATATGGTCGC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
74959221 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * * *
74959261 GCCTT-TGGATCTTAGTCCGGATGTAGTAGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
74959302 GCCTTCAGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
74959343 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
74959367 CATTCGAGTA
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
39 3 0.02
40 58 0.45
41 64 0.50
42 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:74959313 original size:81 final size:82
Alignment explanation
Indices: 74959211--74959364 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 82
74959201 ATATGGTCGC
* * * *
74959211 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGCCTTT-GGATCTT
1 TAGCACAAAAGCCTTCAGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGA-CTT
*
74959274 AGTCCGGATGTAGTAGCT
65 AGCCCGGATGTAGTAGCT
74959292 TAGCACAAAAGCCTTCAGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGACTTA
1 TAGCACAAAAGCCTTCAGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGACTTA
74959357 GCCCGGAT
66 GCCCGGAT
74959365 ATCATTCGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 37 0.56
82 26 0.39
83 3 0.05
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCAGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGACTTA
GCCCGGATGTAGTAGCT
Found at i:74967285 original size:39 final size:40
Alignment explanation
Indices: 74967227--74967326 Score: 98
Period size: 40 Copynumber: 2.6 Consensus size: 40
74967217 AATCAAGCAT
* * *
74967227 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
74967264 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* *
74967304 CTTCGGGACTTAGCCCGGATATA
1 CTTCGGGTCTTAACCCGGATATA
74967327 GTCGCTACCA
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 8 0.16
38 2 0.04
39 16 0.32
40 24 0.48
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:74967390 original size:41 final size:41
Alignment explanation
Indices: 74967262--74967440 Score: 213
Period size: 40 Copynumber: 4.4 Consensus size: 41
74967252 CTCGCACAAG
* * * * * *
74967262 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
74967302 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TACCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* * *
74967342 GCCTTC-GGATCTAAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
74967383 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCAGAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
74967424 GCCTTCGGGAC-TAGCCC
1 GCCTTCGGGACTTAGCCC
74967441 CTATATCATT
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 63 0.52
41 52 0.43
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:74973647 original size:27 final size:26
Alignment explanation
Indices: 74973607--74973721 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
74973597 AGCATGGCTG
* * *
74973607 CCAGAACATATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
74973633 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
74973661 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
74973688 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
74973715 CCAGAAC
1 CCAGAAC
74973722 GCTACCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:74973666 original size:54 final size:54
Alignment explanation
Indices: 74973607--74973721 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
74973597 AGCATGGCTG
* *
74973607 CCAGAACATATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
74973661 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
74973715 CCAGAAC
1 CCAGAAC
74973722 GCTACCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:74975375 original size:26 final size:26
Alignment explanation
Indices: 74975339--74975448 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
74975329 CATGAAATTC
74975339 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
74975365 TTATCATGAAACATTTACCTAACCCT
1 TTATCATGAAACATTTACCTAACCCA
* *
74975391 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
74975417 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
74975443 TTATCA
1 TTATCA
74975449 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:74977756 original size:11 final size:11
Alignment explanation
Indices: 74977742--74977781 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
74977732 AACAAGTTGA
74977742 CAACATGCTTG
1 CAACATGCTTG
74977753 CAACATG-TTG
1 CAACATGCTTG
74977763 ACAACATGCTTG
1 -CAACATGCTTG
74977775 CAACATG
1 CAACATG
74977782 TTGACTGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 3 0.11
11 21 0.78
12 3 0.11
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (11 bp):
CAACATGCTTG
Found at i:74977762 original size:22 final size:22
Alignment explanation
Indices: 74977732--74977786 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
74977722 TGTCATGGGA
*
74977732 AACAAGTTGACAACATGCTTGC
1 AACATGTTGACAACATGCTTGC
74977754 AACATGTTGACAACATGCTTGC
1 AACATGTTGACAACATGCTTGC
74977776 AACATGTTGAC
1 AACATGTTGAC
74977787 TGCTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (22 bp):
AACATGTTGACAACATGCTTGC
Found at i:74978087 original size:35 final size:35
Alignment explanation
Indices: 74978001--74978778 Score: 488
Period size: 37 Copynumber: 21.3 Consensus size: 35
74977991 GAGACAAAGA
* * *
74978001 TCTATCCCAACCTTTTTAAGTTTGCCTTAGGC-GTG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAG-G
* * * *
74978036 TTTA-CCCTAACCTTTTTAAGGTTGCCTTAAACGGG
1 TCTATCCC-AACTTTTTTAAGGTTGCCTTAGACAGG
* * * * * *
74978071 TTTATCCCAGCTTTTTTTAA-GTTGCATTGGAAAAAG
1 TCTATCCCAAC-TTTTTTAAGGTTGCCTTAG-ACAGG
* * * ** * *
74978107 TGTATCTCAACGTTTTTAAGGTTGTTTTAAATAGG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
* * * *
74978142 TCTATCACAACATTTTTAAGGTTGTCTTAGGCAGG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
* * *
74978177 TCAATCCCAACCTTTTTTAAAAGTTTCCTTAGACAAGG
1 TCTATCCCAA-CTTTTTT-AAGGTTGCCTTAGAC-AGG
* * * * *
74978215 TTTATCCCAACATTTTTAAGGTTACCTTAGA-TGAA
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAG-G
* * *
74978250 TCTATCCCAACCTTTTTAAGGTTGCTTTAGACAAG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
74978285 TCTATCCCAACCTTTTTTGAAGGTTGCCTTAGACAAGG
1 TCTATCCCAA-CTTTTTT-AAGGTTGCCTTAGAC-AGG
* *
74978323 TCTATCCCAACATTTTTAAAAGGTTGCCTTAGACTGG
1 TCTATCCCAAC-TTTTT-TAAGGTTGCCTTAGACAGG
* * *
74978360 TCTATTCCAACATTTTTAAAAGGTTGCCTTAGACTGG
1 TCTATCCCAAC-TTTTT-TAAGGTTGCCTTAGACAGG
* * * *
74978397 TCTATTCCAACATTTTTAAAAGGTTGCCTTAGATAAG
1 TCTATCCCAAC-TTTTT-TAAGGTTGCCTTAGACAGG
* * * * **
74978434 CCTATCCTAACATTTTTTAAACGTTGCCTTAGATAAAT
1 TCTATCCCAAC-TTTTTT-AAGGTTGCCTTAGA-CAGG
* *
74978472 TCTATCCCAACTTTTTTAAAAGGTTACCTTAGACTGG
1 TCTATCCCAACTTTTTT--AAGGTTGCCTTAGACAGG
*
74978509 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAAGG
1 TCTATCCCAA-CTTTTTT-AAGGTTGCCTTAGAC-AGG
* * * * * **
74978547 TCTATACCAA-TCTATTTAAGGTTACCTTAAATAAT
1 TCTATCCCAACT-TTTTTAAGGTTGCCTTAGACAGG
* *
74978582 TATATCCCAATCTTTTTTAAAGGTTTCCTTAGACAAGG
1 TCTATCCCAA-CTTTTTT-AAGGTTGCCTTAGAC-AGG
* * * *
74978620 TCTATCTCAAATTTTTTAAATGTTGCCTTAGATAAGG
1 TCTATCCCAACTTTTTT-AAGGTTGCCTTAGA-CAGG
* ** *
74978657 TCTATCCCAACATTTTTAAAAAGGTTATCTTAGACTGG
1 TCTATCCCAAC-TTTTT--TAAGGTTGCCTTAGACAGG
* *
74978695 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGG
1 TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
* * *
74978730 TTTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGG
1 TCTATCCCAA-CTTTTT-TAAGGTT-GCCTTAGAC-AGG
*
74978768 TCTTTCCCAAC
1 TCTATCCCAAC
74978779 CCTTCAATAA
Statistics
Matches: 591, Mismatches: 118, Indels: 66
0.76 0.15 0.09
Matches are distributed among these distances:
34 4 0.01
35 153 0.26
36 74 0.13
37 222 0.38
38 127 0.21
39 11 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (35 bp):
TCTATCCCAACTTTTTTAAGGTTGCCTTAGACAGG
Found at i:74978224 original size:38 final size:38
Alignment explanation
Indices: 74978139--74978779 Score: 547
Period size: 37 Copynumber: 17.4 Consensus size: 38
74978129 TGTTTTAAAT
* * * *
74978139 AGGTCTATCACAA-CATTTTT-AAGGTTGTCTTAGGC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * *
74978174 AGGTCAATCCCAACCTTTTTTAAAAGTTTCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
74978212 AGGTTTATCCCAA-CATTTTT-AAGGTTACCTTAGATGA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA-CA
*
74978249 A--TCTATCCCAACC-TTTTT-AAGGTTGCTTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
*
74978283 A-GTCTATCCCAACCTTTTTTGAAGGTTGCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
74978320 AGGTCTATCCCAACATTTTTAAAAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
74978357 TGGTCTATTCCAACATTTTTAAAAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
74978394 TGGTCTATTCCAACATTTTTAAAAGGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
74978432 A-GCCTATCCTAACATTTTTTAAACGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
** *
74978469 AATTCTATCCCAA-CTTTTTTAAAAGGTTACCTTAGAC-
1 AGGTCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACA
* *
74978506 TGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * * *
74978544 AGGTCTATACCAATC-TATTT-AAGGTTACCTTAAATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
74978580 A-TTATATCCCAATCTTTTTTAAAGGTTTCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
74978617 AGGTCTATCTCAA-ATTTTTTAAATGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * **
74978654 AGGTCTATCCCAACATTTTTAAAAAGGTTATCTTAGAC-
1 AGGTCTATCCCAACCTTTTT-TAAAGGTTGCCTTAGACA
*
74978692 TGGTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
74978727 GGGTTTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACT
1 AGGTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACA
*
74978765 AGGTCTTTCCCAACC
1 AGGTCTATCCCAACC
74978780 CTTCAATAAG
Statistics
Matches: 502, Mismatches: 81, Indels: 43
0.80 0.13 0.07
Matches are distributed among these distances:
34 2 0.00
35 84 0.17
36 47 0.09
37 230 0.46
38 127 0.25
39 12 0.02
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (38 bp):
AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
Found at i:74978235 original size:73 final size:72
Alignment explanation
Indices: 74978139--74978778 Score: 487
Period size: 73 Copynumber: 8.7 Consensus size: 72
74978129 TGTTTTAAAT
* * * * *
74978139 AGGTCTATCACAACATTTTT-AAGGTTGTCTTAGGCAGGTCAATCCCAACCTTTTTTAAAAGTTT
1 AGGTCTATCCCAACATTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAA-C-TTTTTAAAAGTTG
74978203 CCTTAGACA
64 CCTTAGACA
* * * * *
74978212 AGGTTTATCCCAACATTTTT-AAGGTTACCTTAGA-TGAATCTATCCCAACCTTTTT-AAGGTTG
1 AGGTCTATCCCAACATTTTTAAAGGTTGCCTTAGACAG-GTCTATCCCAA-CTTTTTAAAAGTTG
*
74978274 CTTTAGACA
64 CCTTAGACA
* *
74978283 A-GTCTATCCCAACCTTTTTTGAAGGTTGCCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGT
1 AGGTCTATCCCAA-CATTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAAC-TTTTTAAAA-GT
74978347 TGCCTTAGAC-
62 TGCCTTAGACA
* * * *
74978357 TGGTCTATTCCAACATTTTTAAAAGGTTGCCTTAGACTGGTCTATTCCAACATTTTTAAAAGGTT
1 AGGTCTATCCCAACATTTTT-AAAGGTTGCCTTAGACAGGTCTATCCCAAC-TTTTTAAAA-GTT
*
74978422 GCCTTAGATA
63 GCCTTAGACA
* * * * **
74978432 A-GCCTATCCTAACATTTTTTAAACGTTGCCTTAGATAAATTCTATCCCAACTTTTTTAAAAGGT
1 AGGTCTATCCCAACA-TTTTTAAAGGTTGCCTTAGA-CAGGTCTATCCCAAC-TTTTTAAAA-GT
*
74978496 TACCTTAGAC-
62 TGCCTTAGACA
* * * * * *
74978506 TGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACAAGGTCTATACCAATCTATTT-AAGGTT
1 AGGTCTATCCCAA-CATTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAA-CTTTTTAAAAGTT
* * *
74978570 ACCTTAAATA
63 GCCTTAGACA
* * * * * * *
74978580 A-TTATATCCCAATCTTTTTTAAAGGTTTCCTTAGACAAGGTCTATCTCAAATTTTTTAAATGTT
1 AGGTCTATCCCAA-CATTTTTAAAGGTTGCCTTAGAC-AGGTCTATC-CCAACTTTTTAAAAGTT
*
74978644 GCCTTAGATA
63 GCCTTAGACA
** * *
74978654 AGGTCTATCCCAACATTTTTAAAAAGGTTATCTTAGACTGGTCTATCCCAACCTTTTT-AAGGTT
1 AGGTCTATCCCAACATTTTT--AAAGGTTGCCTTAGACAGGTCTATCCCAA-CTTTTTAAAAGTT
74978718 GCCTTAGAC-
63 GCCTTAGACA
* * * * *
74978727 GGGTTTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAGGTCTTTCCCAAC
1 AGGTCTATCCCAACATTTTT-AAAGGTT-GCCTTAGAC-AGGTCTATCCCAAC
74978779 CCTTCAATAA
Statistics
Matches: 457, Mismatches: 84, Indels: 53
0.77 0.14 0.09
Matches are distributed among these distances:
70 10 0.02
71 20 0.04
72 30 0.07
73 139 0.30
74 108 0.24
75 134 0.29
76 16 0.04
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (72 bp):
AGGTCTATCCCAACATTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACTTTTTAAAAGTTGCC
TTAGACA
Found at i:74978745 original size:148 final size:146
Alignment explanation
Indices: 74978109--74978777 Score: 634
Period size: 148 Copynumber: 4.6 Consensus size: 146
74978099 GGAAAAAGTG
* * ** * * * * * *
74978109 TATCTCAACGTTTTTAAGGTTGTTTTAAATAGGTCTATCACAA-CATTTTT-AAGGTTGTCTTAG
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAG
* * * * * * *
74978172 GC-AGGTCAATCCCAACCTTTTTTAAAAGTTTCCTTAGACAAGGTTTATCCCAACATTTTT--AA
66 ACAAGGTCTATCCCAA-ATTTTTTAAAGGTTGCCTTAGAC-TGGTCTATCCCAACATTTTTAAAA
*
74978234 GGTTACCTTAGA-TGAATC
129 GGTTACCTTAGACTG-GTC
* *
74978252 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGTCTATCCCAACCTTTTTTGAAGGTTGCCTTAG
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAG
* *
74978317 ACAAGGTCTATCCCAACATTTTTAAAAGGTTGCCTTAGACTGGTCTATTCCAACATTTTTAAAAG
66 ACAAGGTCTATCCCAA-ATTTTTTAAAGGTTGCCTTAGACTGGTCTATCCCAACATTTTTAAAAG
*
74978382 GTTGCCTTAGACTGGTC
130 GTTACCTTAGACTGGTC
* * * * * * *
74978399 TATTCCAACATTTTTAAAAGGTTGCCTTAGATAAGCCTATCCTAACATTTTTTAAACGTTGCCTT
1 TATCCCAACCTTTTT--AAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTT
* ** * * * *
74978464 AGATAAATTCTATCCCAACTTTTTTAAAAGGTTACCTTAGACTGGTCTATCCCAACCTTTTTTAA
64 AGACAAGGTCTATCCCAAATTTTTT-AAAGGTTGCCTTAGACTGGTCTATCCCAACATTTTTAAA
* * *
74978529 AGGTTGCCTTAAACAAGGTC
128 AGGTTACCTTAGAC-TGGTC
* * * * * * * * * *
74978549 TATACCAATCTATTTAAGGTTACCTTAAATAATTATATCCCAATCTTTTTTAAAGGTTTCCTTAG
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAG
* *
74978614 ACAAGGTCTATCTCAAATTTTTTAAATGTTGCCTTAGA-TAAGGTCTATCCCAACATTTTTAAAA
66 ACAAGGTCTATCCCAAATTTTTTAAAGGTTGCCTTAGACT--GGTCTATCCCAACATTTTT-AAA
*
74978678 AGGTTATCTTAGACTGGTC
128 AGGTTACCTTAGACTGGTC
** * * *
74978697 TATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTTTATCACAACCTTTTTCAAAGGTTGGCCTTA
1 TATCCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAAGGTT-GCCTTA
* *
74978762 -ACTAGGTCTTTCCCAA
65 GACAAGGTCTATCCCAA
74978778 CCCTTCAATA
Statistics
Matches: 428, Mismatches: 84, Indels: 23
0.80 0.16 0.04
Matches are distributed among these distances:
143 36 0.08
144 6 0.01
145 30 0.07
146 33 0.08
147 41 0.10
148 145 0.34
149 122 0.29
150 15 0.04
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (146 bp):
TATCCCAACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAG
ACAAGGTCTATCCCAAATTTTTTAAAGGTTGCCTTAGACTGGTCTATCCCAACATTTTTAAAAGG
TTACCTTAGACTGGTC
Found at i:74984201 original size:43 final size:43
Alignment explanation
Indices: 74984135--74984360 Score: 290
Period size: 43 Copynumber: 5.3 Consensus size: 43
74984125 TTAAAAAAAA
* *
74984135 GCCGCTAAAGACCATGACTTTTAGAGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
74984178 GCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAAAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
74984221 GCCGCTAAAGACTAGGACCTTTAGCGGCGCTTTTCCCAAAAAT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
** ** *
74984264 GCCGCTAAAGACCACAACCTTTAGCGGCGCTTTTTTCACAATC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
74984307 GCCGCTAAAAACCATAACCTTTTGCGGCACTTTTCCCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
74984350 GCCGCTAAAGA
1 GCCGCTAAAGA
74984361 ATATAACATT
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 158 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:74984443 original size:7 final size:7
Alignment explanation
Indices: 74984434--74984477 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
74984424 TTTTTTATTT
*
74984434 TTTAAAT
1 TTTAAAC
74984441 TTTAAA-
1 TTTAAAC
*
74984447 TTTGAAC
1 TTTAAAC
74984454 TTTAAAC
1 TTTAAAC
74984461 TTTAAAC
1 TTTAAAC
*
74984468 TTTATAC
1 TTTAAAC
74984475 TTT
1 TTT
74984478 TAAGGATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 5 0.15
7 28 0.85
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (7 bp):
TTTAAAC
Found at i:74986264 original size:18 final size:18
Alignment explanation
Indices: 74986221--74986257 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
74986211 TGATGGAGTT
74986221 CAAATTAAGAAATTACTA
1 CAAATTAAGAAATTACTA
74986239 CAAATTAAGAAATTACTA
1 CAAATTAAGAAATTACTA
74986257 C
1 C
74986258 TTGTTAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (18 bp):
CAAATTAAGAAATTACTA
Found at i:75005431 original size:40 final size:40
Alignment explanation
Indices: 75005312--75005431 Score: 123
Period size: 40 Copynumber: 3.0 Consensus size: 40
75005302 GCATTTGGAT
* * *
75005312 AAAAAAGACCGCTATAGATCGAGCATTAGTGACGCTTTTTG
1 AAAAACGA-CGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * * *
75005353 AAAAACGTCACTATAGATCGAGAATCAACTGCGCTTTTTG
1 AAAAACGACGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * *
75005393 AAAAGCGACGCTATAGATCTAGCATTAGCGGCGTTTTTT
1 AAAAACGACGCTATAGATCGAGCATTAGCGGCGCTTTTT
75005432 AAGGTCGACC
Statistics
Matches: 61, Mismatches: 18, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
40 55 0.90
41 6 0.10
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (40 bp):
AAAAACGACGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:75006096 original size:7 final size:7
Alignment explanation
Indices: 75006075--75006219 Score: 53
Period size: 7 Copynumber: 20.4 Consensus size: 7
75006065 TTAATTATCA
*
75006075 TTATAGT
1 TTATGGT
*
75006082 TTAGGGT
1 TTATGGT
75006089 TTATGGT
1 TTATGGT
75006096 TTA-GTGT
1 TTATG-GT
*
75006103 TTAAGGT
1 TTATGGT
*
75006110 TTAGGAGTT
1 TTATG-G-T
75006119 ATTAT--T
1 -TTATGGT
*
75006125 TTAAGGT
1 TTATGGT
* *
75006132 TTATAGA
1 TTATGGT
*
75006139 TTATGGA
1 TTATGGT
*
75006146 TTATGGA
1 TTATGGT
75006153 TTATGGT
1 TTATGGT
* *
75006160 TTAAGGG
1 TTATGGT
* *
75006167 TTAGGGG
1 TTATGGT
*
75006174 TTAGGGT
1 TTATGGT
*
75006181 TTAGGGGT
1 TTA-TGGT
*
75006189 TTAGGGT
1 TTATGGT
*
75006196 TTATGTT
1 TTATGGT
*
75006203 TTATGAT
1 TTATGGT
*
75006210 TTAGGGT
1 TTATGGT
75006217 TTA
1 TTA
75006220 AAAATTAAGG
Statistics
Matches: 110, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
5 3 0.03
6 2 0.02
7 92 0.84
8 9 0.08
9 1 0.01
10 3 0.03
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:75006097 original size:14 final size:14
Alignment explanation
Indices: 75006075--75006219 Score: 78
Period size: 14 Copynumber: 10.2 Consensus size: 14
75006065 TTAATTATCA
*
75006075 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
75006089 TTATGGTTTAGTGT
1 TTATGGTTTAGGGT
*
75006103 TTAAGGTTTAGGAGTT
1 TTATGGTTTAGG-G-T
*
75006119 ATTAT--TTTAAGGT
1 -TTATGGTTTAGGGT
* * * *
75006132 TTATAGATTATGGA
1 TTATGGTTTAGGGT
* *
75006146 TTATGGATTATGGT
1 TTATGGTTTAGGGT
* * *
75006160 TTAAGGGTTAGGGG
1 TTATGGTTTAGGGT
*
75006174 TTAGGGTTTAGGGGT
1 TTATGGTTTA-GGGT
* * *
75006189 TTAGGGTTTATGTT
1 TTATGGTTTAGGGT
*
75006203 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
75006217 TTA
1 TTA
75006220 AAAATTAAGG
Statistics
Matches: 101, Mismatches: 24, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
12 4 0.04
13 1 0.01
14 73 0.72
15 19 0.19
16 1 0.01
17 3 0.03
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:75006104 original size:21 final size:20
Alignment explanation
Indices: 75006075--75006219 Score: 67
Period size: 21 Copynumber: 6.8 Consensus size: 20
75006065 TTAATTATCA
75006075 TTATAGTTTAGGGTTTATGGT
1 TTAT-GTTTAGGGTTTATGGT
* *
75006096 TTAGTGTTTAAGGTTTAGGAGTT
1 TTA-TGTTTAGGGTTTATG-G-T
* * *
75006119 ATTAT-TTTAAGGTTTATAGA
1 -TTATGTTTAGGGTTTATGGT
* * *
75006139 TTATGGATTATGGATTATGGT
1 TTAT-GTTTAGGGTTTATGGT
* * * *
75006160 TTAAGGGTTAGGGGTTAGGGT
1 TT-ATGTTTAGGGTTTATGGT
* *
75006181 TTAGGGGTTTAGGGTTTATGTT
1 TTA--TGTTTAGGGTTTATGGT
75006203 TTATGATTTAGGGTTTA
1 TTATG-TTTAGGGTTTA
75006220 AAAATTAAGG
Statistics
Matches: 94, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
19 4 0.04
20 2 0.02
21 53 0.56
22 30 0.32
23 2 0.02
24 3 0.03
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (20 bp):
TTATGTTTAGGGTTTATGGT
Found at i:75006192 original size:15 final size:15
Alignment explanation
Indices: 75006157--75006198 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
75006147 TATGGATTAT
75006157 GGTTTAAGGG-TTAGG
1 GGTTT-AGGGTTTAGG
75006172 GG-TTAGGGTTTAGG
1 GGTTTAGGGTTTAGG
75006186 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
75006199 TGTTTTATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.16
14 9 0.36
15 12 0.48
ACGTcount: A:0.17, C:0.00, G:0.45, T:0.38
Consensus pattern (15 bp):
GGTTTAGGGTTTAGG
Found at i:75007234 original size:116 final size:116
Alignment explanation
Indices: 75007028--75007244 Score: 249
Period size: 116 Copynumber: 1.9 Consensus size: 116
75007018 CGATGTTTTT
* * * *
75007028 ATCATAAACGACGTCGTTCTATTGGATTTCTTAGTGGCGTTTTTGGTGAAACGCCACAATATGCC
1 ATCATAAACGACATCGTTCTATTGGATTTCTTAGTGGCATTTTTGGTAAAACGCCACAATAGGCC
*
75007093 AAGCTTTAGCGGCGCCAGTGAAAAAACGCCGCAAAAAAAATATTATGTTTA
66 AAGCTTTAGCGGCGCCAGTGAAAAAACACCGCAAAAAAAATATTATGTTTA
* * * * * * *
75007144 ATCA-AAACGACATCGTTTTATTTGATTTTTTTAGTGGCATTTTTGTTAAAATGCCGCAATAGGT
1 ATCATAAACGACATCGTTCTATTGGA-TTTCTTAGTGGCATTTTTGGTAAAACGCCACAATAGGC
** * * *
75007208 CTTGCTTTAGCGGCTCTAGGTG-AAAAACACCGTAAAA
65 CAAGCTTTAGCGGCGCCA-GTGAAAAAACACCGCAAAA
75007245 TGTTATTTGT
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
115 18 0.22
116 61 0.74
117 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (116 bp):
ATCATAAACGACATCGTTCTATTGGATTTCTTAGTGGCATTTTTGGTAAAACGCCACAATAGGCC
AAGCTTTAGCGGCGCCAGTGAAAAAACACCGCAAAAAAAATATTATGTTTA
Found at i:75007567 original size:41 final size:41
Alignment explanation
Indices: 75007522--75007602 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
75007512 GTAGCCCAAC
75007522 CTTTTTTCCTCTGCTTTTTTT-CCCAACCTTTTCTCTTTACT
1 CTTTTTTCC-CTGCTTTTTTTCCCCAACCTTTTCTCTTTACT
75007563 CTTTTTTCCCTGCTTTTTTTCCCCAACCTTTTCTCTTTAC
1 CTTTTTTCCCTGCTTTTTTTCCCCAACCTTTTCTCTTTAC
75007603 GGGTCTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 11 0.28
41 28 0.72
ACGTcount: A:0.07, C:0.33, G:0.02, T:0.57
Consensus pattern (41 bp):
CTTTTTTCCCTGCTTTTTTTCCCCAACCTTTTCTCTTTACT
Found at i:75008315 original size:10 final size:10
Alignment explanation
Indices: 75008300--75008324 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
75008290 TATATATAAT
75008300 TTCATGGTTG
1 TTCATGGTTG
75008310 TTCATGGTTG
1 TTCATGGTTG
75008320 TTCAT
1 TTCAT
75008325 CTTTAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (10 bp):
TTCATGGTTG
Found at i:75010434 original size:43 final size:43
Alignment explanation
Indices: 75010280--75010594 Score: 352
Period size: 43 Copynumber: 7.4 Consensus size: 43
75010270 AATATTTTTT
* * *
75010280 TAAAGGTCAAGTTCTTTAGCGGCGTTTGT-GAGAAAAGTACCGT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGA-AAAAGTACCGC
* * * * ** *
75010323 TAAAGGTC-TGCTCTATAGTGGTGTTTGTAGCAAAAGCGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
*
75010365 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
* * * *
75010407 TAAAGGTCATGTTCTTTAGCAGCGTTTGTAG-CAAAG-CCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
* *
75010448 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
* * * * *
75010491 TAAAAGTCATTTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
** * *
75010534 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
75010577 TAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTATA
75010595 ACGACATTTT
Statistics
Matches: 226, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
41 32 0.14
42 72 0.32
43 122 0.54
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
Found at i:75010443 original size:84 final size:83
Alignment explanation
Indices: 75010280--75010594 Score: 366
Period size: 84 Copynumber: 3.7 Consensus size: 83
75010270 AATATTTTTT
* * * * *
75010280 TAAAGGTCAAGTTCTTTAGCGGCGTTTGT-GAGAAAAGTACCGTTAAAGGTC-TGCTCTATAGTG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGA-AAAAGTACCGCTAAAGGTCATGTTCTATAG-C
* *
75010343 GTGTTTGTAGCAAAAGCGCCAC
64 GCGTTTGTAGC-AAAGC-CCGC
*
75010365 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTTTAGCAG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATAGC-G
75010429 CGTTTGTAGCAAAGCCCGC
65 CGTTTGTAGCAAAGCCCGC
* * *
75010448 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAAGTCATTTTCTATAGCGA
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATAGCG-
** *
75010513 CGTTTGTAAAAAAAGAACCGC
65 CGTTTGT-AGCAAAG-CCCGC
** ** *
75010534 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATA
75010595 ACGACATTTT
Statistics
Matches: 202, Mismatches: 21, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
83 12 0.06
84 98 0.49
85 33 0.16
86 59 0.29
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (83 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATAGCGC
GTTTGTAGCAAAGCCCGC
Found at i:75010506 original size:127 final size:128
Alignment explanation
Indices: 75010280--75010594 Score: 384
Period size: 127 Copynumber: 2.5 Consensus size: 128
75010270 AATATTTTTT
* * * * *
75010280 TAAAGGTCAAGTTCTTTAGCGGCGTTTGTGAGAAAAGTACCGTTAAAGGTC-TGCTCTATAGTGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
* * * * ** *
75010344 TGTTTGTAGCAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGC
66 CGTTTGTAGAAAAAGCGCCACTAAAAGTCTGTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
* * *
75010407 TAAAGGTCATGTTCTTTAGCAGCGTTTGT-AGCAAAG-CCCGCTAAAGGTCATGTTCTATAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
* * * *
75010470 CGTTTGTGGAAAAAGTGCCGCTAAAAGTCATTTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
66 CGTTTGTAGAAAAAGCGCCACTAAAAGTC-TGTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
* ** * *
75010534 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATA
75010595 ACGACATTTT
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
125 11 0.07
126 40 0.25
127 81 0.51
128 5 0.03
129 22 0.14
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (128 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
CGTTTGTAGAAAAAGCGCCACTAAAAGTCTGTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
Found at i:75012865 original size:30 final size:30
Alignment explanation
Indices: 75012831--75012892 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
75012821 GTCCTTAACT
75012831 TAAACTTTTGCAAAATTACAATTTTGCCCC
1 TAAACTTTTGCAAAATTACAATTTTGCCCC
* * *
75012861 TAAACTTTTGCATATTTACACTTTTGCCCC
1 TAAACTTTTGCAAAATTACAATTTTGCCCC
75012891 TA
1 TA
75012893 GGCTCGAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (30 bp):
TAAACTTTTGCAAAATTACAATTTTGCCCC
Found at i:75017691 original size:34 final size:34
Alignment explanation
Indices: 75017648--75017716 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
75017638 CGACCATCAC
*
75017648 CAACAGGCCAATAAACATTATTGAGAACCTCTGG
1 CAACAGGCCAATAAACATTATTAAGAACCTCTGG
75017682 CAACAGGCCAATAAACATTATTAAGAACCTCTGG
1 CAACAGGCCAATAAACATTATTAAGAACCTCTGG
75017716 C
1 C
75017717 CAGACTTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (34 bp):
CAACAGGCCAATAAACATTATTAAGAACCTCTGG
Found at i:75019954 original size:46 final size:46
Alignment explanation
Indices: 75019887--75020062 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
75019877 ATGTAACCCG
** *
75019887 TCCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
* * *
75019933 TCCATGAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCA
* * * *
75019983 T-C-TTA-TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
75020026 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
75020063 ATGCCCAAAC
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCA
Found at i:75020059 original size:93 final size:93
Alignment explanation
Indices: 75019897--75020067 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75019887 TCCATAAGCA
* * * * *
75019897 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
75019962 GAGTTCGGATGCCTAGTTACATCTTATG
66 GAGTTCGGATGCCTAGTTACATCTTATG
*
75019990 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
75020055 GAGTTCGGATGCC
66 GAGTTCGGATGCC
75020068 CAAACATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTTATG
Found at i:75020082 original size:46 final size:45
Alignment explanation
Indices: 75019897--75020082 Score: 153
Period size: 46 Copynumber: 4.0 Consensus size: 45
75019887 TCCATAAGCA
* * * * * *
75019897 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-GAGTG
1 AACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCATACATCTAGTG
* *
75019943 AACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTTA-TG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-TAGTG
* * * * *
75019990 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-AAGTG
1 AACTCGGACTCAACTCAACGAGTTC-G-GATGCCCATACATCTAGTG
*
75020036 AACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCCATACAT-CTAGTG
75020082 A
1 A
75020083 CATGTCACTT
Statistics
Matches: 110, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.10
45 4 0.04
46 59 0.54
47 30 0.27
48 2 0.02
49 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCTAGTG
Found at i:75036854 original size:68 final size:69
Alignment explanation
Indices: 75036732--75036868 Score: 258
Period size: 68 Copynumber: 2.0 Consensus size: 69
75036722 CCAAATTTTA
*
75036732 CAGGTCAAGTAACAGACATTTCATAAACGTTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
1 CAGGTCAAGTAACAGACATTTCATAAACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
75036797 ATAT
66 ATAT
75036801 CAGGTCAAGTAACAGACATTTCAT-AACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
1 CAGGTCAAGTAACAGACATTTCATAAACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
75036865 ATAT
66 ATAT
75036869 AGTCCCTTAC
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 43 0.64
69 24 0.36
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (69 bp):
CAGGTCAAGTAACAGACATTTCATAAACATTTAGTGTTCATATCAGATTTCAATCAAATTTAATA
ATAT
Found at i:75037471 original size:26 final size:25
Alignment explanation
Indices: 75037442--75037490 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
75037432 GCACTCTCTC
*
75037442 GAGCCATATATCAGGAATGCTTATAT
1 GAGCCATATAACAGGAA-GCTTATAT
*
75037468 GAGCCATGTAACAGGAAGCTTAT
1 GAGCCATATAACAGGAAGCTTAT
75037491 CCGGGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTTATAT
Found at i:75037790 original size:65 final size:65
Alignment explanation
Indices: 75037652--75037793 Score: 153
Period size: 65 Copynumber: 2.2 Consensus size: 65
75037642 GCCATATCAG
* * * * * * * *
75037652 GATGCTCATAAAGAGCTGCGTTTGTGTCCGTAACATATGCAAGATCACAACTGATCGCATACCAA
1 GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAAGATCACAACTGATCGAATAACAA
*
75037717 GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAGGATCACAA-TCGATC-AATAAAC
1 GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAAGATCACAACT-GATCGAAT-AAC
*
75037780 AG
64 AA
*
75037782 GATTCTCACAAA
1 GATGCTCACAAA
75037794 GAGCTGCGGT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
64 3 0.05
65 61 0.95
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (65 bp):
GATGCTCACAAAAAGATGTGTTTATGTCCGCAACATATGCAAGATCACAACTGATCGAATAACAA
Found at i:75038452 original size:21 final size:21
Alignment explanation
Indices: 75038418--75038459 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75038408 AGCCCATATA
*
75038418 TTTCACAAAATTTAGAATTTT
1 TTTCACAAAATTTACAATTTT
* *
75038439 TTTCATAAATTTTACAATTTT
1 TTTCACAAAATTTACAATTTT
75038460 ACAATTTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTCACAAAATTTACAATTTT
Found at i:75042365 original size:16 final size:16
Alignment explanation
Indices: 75042346--75042377 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75042336 TGTCAACAAG
75042346 TTAAAGCCGAGCATCA
1 TTAAAGCCGAGCATCA
*
75042362 TTAAAGCCTAGCATCA
1 TTAAAGCCGAGCATCA
75042378 GGTACCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.22
Consensus pattern (16 bp):
TTAAAGCCGAGCATCA
Found at i:75057839 original size:96 final size:96
Alignment explanation
Indices: 75057601--75058001 Score: 693
Period size: 96 Copynumber: 4.2 Consensus size: 96
75057591 CCCTTCGGGA
* * * * *
75057601 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
75057664 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
75057695 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
75057758 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
75057789 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
75057854 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
75057885 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
75057950 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
75057981 CTTATCACATATATATACACT
1 CTTATCACATATATATACACT
75058002 CACATCACAA
Statistics
Matches: 290, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
93 1 0.00
94 89 0.31
96 200 0.69
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75057857 original size:143 final size:141
Alignment explanation
Indices: 75057601--75057995 Score: 646
Period size: 143 Copynumber: 2.8 Consensus size: 141
75057591 CCCTTCGGGA
* * * * * *
75057601 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
75057666 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
75057731 GGCTATTAGGC
131 GGCCATTAGGC
* *
75057742 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
75057807 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
75057872 TCGGCCATTAGGC
129 TCGGCCATTAGGC
75057885 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
75057950 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
75057996 TACACTCACA
Statistics
Matches: 234, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
141 47 0.20
143 142 0.61
145 45 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Done.