Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 237 of 318
Found at i:75206873 original size:24 final size:24
Alignment explanation
Indices: 75206841--75206922 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
75206831 CCTTCGTCTG
*
75206841 TTTCTTTCTCCTTTTTCTTTTTTT
1 TTTCTTTCTCCTTTTTCTTTTCTT
* * * *
75206865 TTTCTTTCTCGTTTTGCTTCTCTG
1 TTTCTTTCTCCTTTTTCTTTTCTT
75206889 TTTCGTTTCTACC--TTTCTATTTCTT
1 TTTC-TTTCT-CCTTTTTCT-TTTCTT
75206914 TTTCTTTCT
1 TTTCTTTCT
75206923 TTCTTTATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 32 0.70
25 13 0.28
26 1 0.02
ACGTcount: A:0.02, C:0.23, G:0.05, T:0.70
Consensus pattern (24 bp):
TTTCTTTCTCCTTTTTCTTTTCTT
Found at i:75209758 original size:20 final size:19
Alignment explanation
Indices: 75209717--75209769 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
75209707 ACACATGCAT
75209717 AACATAA-CATTTATCATC
1 AACATAATCATTTATCATC
75209735 AACATAATCA-TTATACATTC
1 AACATAATCATTTAT-CA-TC
75209755 AACATAATCATTTAT
1 AACATAATCATTTAT
75209770 TACTAGCCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.35
19 4 0.13
20 12 0.39
21 4 0.13
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (19 bp):
AACATAATCATTTATCATC
Found at i:75210651 original size:18 final size:20
Alignment explanation
Indices: 75210614--75210652 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
75210604 AAGAAAAAAT
*
75210614 ATAGTTTGAAGAATAAGAAA
1 ATAGTGTGAAGAATAAGAAA
75210634 ATAGTGTGAA-AA-AAGAAA
1 ATAGTGTGAAGAATAAGAAA
75210652 A
1 A
75210653 AAATGGCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
20 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (20 bp):
ATAGTGTGAAGAATAAGAAA
Found at i:75216884 original size:30 final size:31
Alignment explanation
Indices: 75216838--75216898 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
75216828 ATCCTGAGCC
75216838 TAGGGGCAAAAATGTAAATATG-CAAAATTT
1 TAGGGGCAAAAATGTAAATATGCCAAAATTT
* * * *
75216868 TAGGGGTAAAATTGTAATTTTGCCAAAATTT
1 TAGGGGCAAAAATGTAAATATGCCAAAATTT
75216899 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.33
Consensus pattern (31 bp):
TAGGGGCAAAAATGTAAATATGCCAAAATTT
Found at i:75217366 original size:46 final size:46
Alignment explanation
Indices: 75217316--75217491 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
75217306 TGGTTGAGCA
75217316 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75217362 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75217407 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75217455 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75217492 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75217472 original size:93 final size:93
Alignment explanation
Indices: 75217313--75217484 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
75217303 GGATGGTTGA
*
75217313 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75217378 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75217406 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
75217470 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75217485 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75219887 original size:8 final size:8
Alignment explanation
Indices: 75219876--75219908 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
75219866 GTTTACAGTC
75219876 ATACATAT
1 ATACATAT
75219884 ATACATAT
1 ATACATAT
*
75219892 ATACACAT
1 ATACATAT
75219900 AT-CATAT
1 ATACATAT
75219907 AT
1 AT
75219909 GGATATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (8 bp):
ATACATAT
Found at i:75220784 original size:15 final size:15
Alignment explanation
Indices: 75220764--75220793 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75220754 GGAAGAAAAG
75220764 GCGTCAATTTTTCTT
1 GCGTCAATTTTTCTT
75220779 GCGTCAATTTTTCTT
1 GCGTCAATTTTTCTT
75220794 TCTCCAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.13, T:0.53
Consensus pattern (15 bp):
GCGTCAATTTTTCTT
Found at i:75221061 original size:37 final size:37
Alignment explanation
Indices: 75221009--75221084 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
75220999 AACCACTAGA
*
75221009 CCAGCAGGCCTATTCTGTTATATTTTCACAAACTTAT
1 CCAGCAGGCCCATTCTGTTATATTTTCACAAACTTAT
*
75221046 CCAGCAGGCCCATTCTGTTATATTTTCACACACTTAT
1 CCAGCAGGCCCATTCTGTTATATTTTCACAAACTTAT
75221083 CC
1 CC
75221085 TTATAAGCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.36
Consensus pattern (37 bp):
CCAGCAGGCCCATTCTGTTATATTTTCACAAACTTAT
Found at i:75224872 original size:14 final size:15
Alignment explanation
Indices: 75224853--75224881 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75224843 ATATTTAGCT
75224853 CTTTTC-TTTTGTTC
1 CTTTTCTTTTTGTTC
75224867 CTTTTCTTTTTGTTC
1 CTTTTCTTTTTGTTC
75224882 TATCGATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.07, T:0.72
Consensus pattern (15 bp):
CTTTTCTTTTTGTTC
Found at i:75227768 original size:26 final size:25
Alignment explanation
Indices: 75227732--75227786 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
75227722 TGTTTTTTAG
*
75227732 GTTTTTGGTGCTATTTTGGTGATGTT
1 GTTTTTGGTGCT-GTTTGGTGATGTT
* *
75227758 GTTTTTTGTGCTGTTTGGTGCTGTT
1 GTTTTTGGTGCTGTTTGGTGATGTT
75227783 -TTTT
1 GTTTT
75227787 GTGTTGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 4 0.15
25 11 0.42
26 11 0.42
ACGTcount: A:0.04, C:0.05, G:0.29, T:0.62
Consensus pattern (25 bp):
GTTTTTGGTGCTGTTTGGTGATGTT
Found at i:75227796 original size:12 final size:12
Alignment explanation
Indices: 75227757--75227806 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
75227747 TTGGTGATGT
75227757 TGTTTTTTGTGC
1 TGTTTTTTGTGC
*
75227769 TG--TTTGGTGC
1 TGTTTTTTGTGC
*
75227779 TGTTTTTTGTGT
1 TGTTTTTTGTGC
*
75227791 TG-TTTTTATGC
1 TGTTTTTTGTGC
75227802 TGTTT
1 TGTTT
75227807 GGTGTTGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 9 0.30
11 9 0.30
12 12 0.40
ACGTcount: A:0.02, C:0.06, G:0.26, T:0.66
Consensus pattern (12 bp):
TGTTTTTTGTGC
Found at i:75227803 original size:33 final size:33
Alignment explanation
Indices: 75227735--75227828 Score: 118
Period size: 33 Copynumber: 2.8 Consensus size: 33
75227725 TTTTTAGGTT
* *
75227735 TTTGGTGCTATTTTGGTGATGTTGTTTTTTGTGCTG
1 TTTGGTGCTGTTTT-GTG-TGTTG-TTTTTATGCTG
*
75227771 TTTGGTGCTGTTTTTTGTGTTGTTTTTATGCTG
1 TTTGGTGCTGTTTTGTGTGTTGTTTTTATGCTG
*
75227804 TTTGGTGTTGTTTTGT-TGTTGTTTT
1 TTTGGTGCTGTTTTGTGTGTTGTTTT
75227829 GGTATTGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
32 9 0.17
33 24 0.45
34 5 0.09
35 2 0.04
36 13 0.25
ACGTcount: A:0.03, C:0.04, G:0.29, T:0.64
Consensus pattern (33 bp):
TTTGGTGCTGTTTTGTGTGTTGTTTTTATGCTG
Found at i:75227813 original size:21 final size:22
Alignment explanation
Indices: 75227776--75227842 Score: 75
Period size: 21 Copynumber: 3.0 Consensus size: 22
75227766 TGCTGTTTGG
*
75227776 TGCTGTTTTTTGTGTTGTTTTTA
1 TGCTG-TTTTGGTGTTGTTTTTA
75227799 TGCTG-TTTGGTGTTGTTTTGT-
1 TGCTGTTTTGGTGTTGTTTT-TA
* *
75227820 TGTTGTTTTGGTATTGTTTTTA
1 TGCTGTTTTGGTGTTGTTTTTA
75227842 T
1 T
75227843 ACTTAGGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 18 0.47
22 15 0.39
23 5 0.13
ACGTcount: A:0.04, C:0.03, G:0.25, T:0.67
Consensus pattern (22 bp):
TGCTGTTTTGGTGTTGTTTTTA
Found at i:75227818 original size:11 final size:11
Alignment explanation
Indices: 75227771--75227839 Score: 59
Period size: 11 Copynumber: 6.3 Consensus size: 11
75227761 TTTTGTGCTG
*
75227771 TTTGGTGCTGTT
1 TTTGGTGTTG-T
*
75227783 TTTTGTGTTGT
1 TTTGGTGTTGT
** *
75227794 TTTTATGCTG-
1 TTTGGTGTTGT
75227804 TTTGGTGTTGT
1 TTTGGTGTTGT
*
75227815 TTTGTTGTTGT
1 TTTGGTGTTGT
*
75227826 TTTGGTATTGT
1 TTTGGTGTTGT
75227837 TTT
1 TTT
75227840 TATACTTAGG
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
10 7 0.15
11 31 0.67
12 8 0.17
ACGTcount: A:0.03, C:0.03, G:0.28, T:0.67
Consensus pattern (11 bp):
TTTGGTGTTGT
Found at i:75228787 original size:24 final size:25
Alignment explanation
Indices: 75228754--75228800 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75228744 CTTATTTTAA
* *
75228754 TATTTGTTTA-TATGTTTTTAAATG
1 TATTTATTTATTATATTTTTAAATG
75228778 TATTTATTTATTATATTTTTAAA
1 TATTTATTTATTATATTTTTAAA
75228801 ATTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (25 bp):
TATTTATTTATTATATTTTTAAATG
Found at i:75228808 original size:25 final size:27
Alignment explanation
Indices: 75228761--75228812 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
75228751 TAATATTTGT
*
75228761 TTATATGTTTTTAAATGTATTTATTTA
1 TTATATGTTTTAAAATGTATTTATTTA
*
75228788 TTATAT-TTTTAAAAT-TTTTTATTTA
1 TTATATGTTTTAAAATGTATTTATTTA
75228813 ATGAAATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 8 0.35
27 6 0.26
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (27 bp):
TTATATGTTTTAAAATGTATTTATTTA
Found at i:75238590 original size:40 final size:39
Alignment explanation
Indices: 75238508--75238620 Score: 156
Period size: 40 Copynumber: 2.9 Consensus size: 39
75238498 GCTTCTGTTT
* *
75238508 AGCTCTTATGAGCTTCTG-TTGGCGTGTTTCAGTAGGACC
1 AGCTCTTATGAGCTTCTGTTTGGTGT-TTTCAGTTGGACC
*
75238547 AGCTCTTATGAGCTTCTGTTTGGTGTATTTCAGTTGGATC
1 AGCTCTTATGAGCTTCTGTTTGGTGT-TTTCAGTTGGACC
* *
75238587 AGCTCTTATGAGCTTTTGTTTGGTGTGTTCAGTT
1 AGCTCTTATGAGCTTCTGTTTGGTGTTTTCAGTT
75238621 TATATGACGA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 25 0.37
40 42 0.63
ACGTcount: A:0.14, C:0.16, G:0.27, T:0.43
Consensus pattern (39 bp):
AGCTCTTATGAGCTTCTGTTTGGTGTTTTCAGTTGGACC
Found at i:75239998 original size:17 final size:17
Alignment explanation
Indices: 75239976--75240018 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
75239966 AAGTATGCAC
*
75239976 ATGTTTAGGAATGTTTA
1 ATGTTTAGGAATATTTA
*
75239993 ATGTTTAAGAATATTTA
1 ATGTTTAGGAATATTTA
*
75240010 ATGTATAGG
1 ATGTTTAGG
75240019 TGTTTTGTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (17 bp):
ATGTTTAGGAATATTTA
Found at i:75240503 original size:18 final size:18
Alignment explanation
Indices: 75240477--75240515 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
75240467 GTATATATTT
*
75240477 TAAATTTATTTAGGTAAA
1 TAAACTTATTTAGGTAAA
*
75240495 TAAACTTATTTAGGTAGA
1 TAAACTTATTTAGGTAAA
75240513 TAA
1 TAA
75240516 GTTTTATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.41
Consensus pattern (18 bp):
TAAACTTATTTAGGTAAA
Found at i:75241668 original size:37 final size:37
Alignment explanation
Indices: 75241618--75241730 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
75241608 CTTTAGCTCA
* *
75241618 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
75241655 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
75241692 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
75241729 GA
1 GA
75241731 ATATATTTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:75241996 original size:47 final size:47
Alignment explanation
Indices: 75241935--75242119 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
75241925 TACATATATT
* * * *
75241935 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
75241982 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
75242029 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
75242076 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
75242120 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:75242055 original size:22 final size:22
Alignment explanation
Indices: 75242028--75242103 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
75242018 GCTCACATTC
75242028 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
75242050 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
75242074 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
75242097 ATCACAT
1 ATCACAT
75242104 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:75249277 original size:42 final size:42
Alignment explanation
Indices: 75249219--75249302 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
75249209 TATTTTTATT
75249219 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
* *
75249261 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTGTTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
75249303 AATTAGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
Found at i:75251408 original size:22 final size:23
Alignment explanation
Indices: 75251360--75251408 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
75251350 TTAATAGTAA
*
75251360 TTAGAAAGTAGAGTTCTATTTTAT
1 TTAGAAAGCAGAGTTCTA-TTTAT
*
75251384 TTAGAAAGCATAGTTCTA-TTAT
1 TTAGAAAGCAGAGTTCTATTTAT
75251406 TTA
1 TTA
75251409 TACTTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
24 16 0.70
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (23 bp):
TTAGAAAGCAGAGTTCTATTTAT
Found at i:75251875 original size:12 final size:13
Alignment explanation
Indices: 75251844--75251874 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
75251834 TAGTTTTAAA
75251844 AAAAAATATATTT
1 AAAAAATATATTT
*
75251857 AAAAAATATTTTT
1 AAAAAATATATTT
75251870 AAAAA
1 AAAAA
75251875 TCAAATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAAAATATATTT
Found at i:75252327 original size:17 final size:18
Alignment explanation
Indices: 75252290--75252327 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
75252280 TCTTGCTACT
75252290 ATTTTGTTATTATTAAGTTA
1 ATTTTGTTATTATT-A-TTA
75252310 ATTTTGTTATTATT-TTA
1 ATTTTGTTATTATTATTA
75252327 A
1 A
75252328 AGACATTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
20 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (18 bp):
ATTTTGTTATTATTATTA
Found at i:75252510 original size:12 final size:12
Alignment explanation
Indices: 75252489--75252522 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
75252479 TATATATTTT
*
75252489 AAAATTATATAA
1 AAAATAATATAA
75252501 AAAATAATATAA
1 AAAATAATATAA
*
75252513 AAATTAATAT
1 AAAATAATAT
75252523 GAGCTGGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:75252866 original size:7 final size:8
Alignment explanation
Indices: 75252849--75252885 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
75252839 GGTTGCATTA
75252849 AAAAAAGG
1 AAAAAAGG
*
75252857 AAAAAAGA
1 AAAAAAGG
75252865 AAAAAAGG
1 AAAAAAGG
75252873 -AAAAAGG
1 AAAAAAGG
75252880 AAAAAA
1 AAAAAA
75252886 TAATCCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:75252867 original size:16 final size:16
Alignment explanation
Indices: 75252848--75252885 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
75252838 AGGTTGCATT
75252848 AAAAAAAGGAAAAAAG
1 AAAAAAAGGAAAAAAG
*
75252864 AAAAAAAGGAAAAAGG
1 AAAAAAAGGAAAAAAG
75252880 AAAAAA
1 AAAAAA
75252886 TAATCCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAGGAAAAAAG
Found at i:75266939 original size:6 final size:6
Alignment explanation
Indices: 75266928--75266967 Score: 71
Period size: 6 Copynumber: 6.5 Consensus size: 6
75266918 AGGTTTTCTC
75266928 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAGAAAT GAA
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GA-AAAT GAA
75266968 TTCATTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.20, T:0.15
Consensus pattern (6 bp):
GAAAAT
Found at i:75269873 original size:17 final size:18
Alignment explanation
Indices: 75269843--75269899 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
75269833 ATAACAAATT
* *
75269843 GGGAGTTAAAAATG-AGA
1 GGGAGTTGAGAATGAAGA
*
75269860 GGGAGTTGAGAATGAAGT
1 GGGAGTTGAGAATGAAGA
*
75269878 GGGAGATGAGAATGAAGA
1 GGGAGTTGAGAATGAAGA
75269896 GGGA
1 GGGA
75269900 TCTGAATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 12 0.35
18 22 0.65
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.16
Consensus pattern (18 bp):
GGGAGTTGAGAATGAAGA
Found at i:75277308 original size:19 final size:20
Alignment explanation
Indices: 75277284--75277321 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75277274 GGTACCACCA
75277284 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
75277303 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
75277322 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:75277666 original size:93 final size:93
Alignment explanation
Indices: 75277551--75277721 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75277541 GCCCCTAAGT
*
75277551 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAATGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
*
75277615 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGAATGCCTAGTTACATCTCAC
* * * *
75277644 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
75277709 CGAGTTCGAATGC
66 CGAGTTCGAATGC
75277722 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:75277711 original size:46 final size:46
Alignment explanation
Indices: 75277546--75277716 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
75277536 AACCCGCCCC
* * *
75277546 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCA
* * * *
75277592 TAAATGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
75277640 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
75277685 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
75277717 AATGCTCAAC
Statistics
Matches: 103, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 55 0.53
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:75278175 original size:30 final size:30
Alignment explanation
Indices: 75278141--75278200 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
75278131 ATTTAATACG
75278141 AACTTTAAAAAAAGTACACTTTTGCCCCTA
1 AACTTTAAAAAAAGTACACTTTTGCCCCTA
*** * *
75278171 AACTTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAAGTACACTTTTGCCCCTA
75278201 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAAGTACACTTTTGCCCCTA
Found at i:75283889 original size:6 final size:6
Alignment explanation
Indices: 75283878--75283904 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
75283868 ATTTATCTAA
75283878 TATAAT TATAAT TATAAT TATAAT TAT
1 TATAAT TATAAT TATAAT TATAAT TAT
75283905 TAAGAGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TATAAT
Found at i:75284124 original size:34 final size:34
Alignment explanation
Indices: 75284076--75284178 Score: 179
Period size: 34 Copynumber: 3.0 Consensus size: 34
75284066 TTGGTATACT
* * *
75284076 ATCATGACTTCATCTATTGAATTCTAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
75284110 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
75284144 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
75284178 A
1 A
75284179 CATAGAAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (34 bp):
ATCATGAATCCATCTATTGAATTCCAGGAAAACA
Found at i:75285996 original size:37 final size:38
Alignment explanation
Indices: 75285930--75286044 Score: 146
Period size: 37 Copynumber: 3.1 Consensus size: 38
75285920 AGCGTAAAGT
* *
75285930 TATTCGGGCTTCATGCCTAGAA-GCTTTGTGCCGGTGA
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
*
75285967 TATTTGGGC-CCATGCCTAAAAGGCTTTGTGCCGGTGA
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
*** *
75286004 TATTTGGGCTTTGTGCCTAGTAGGCTTTGTGCCGGTG-
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
75286041 TATT
1 TATT
75286045 ATATCAGGCT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
36 10 0.15
37 36 0.53
38 22 0.32
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.36
Consensus pattern (38 bp):
TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
Found at i:75286070 original size:41 final size:41
Alignment explanation
Indices: 75285987--75286178 Score: 237
Period size: 41 Copynumber: 4.8 Consensus size: 41
75285977 CATGCCTAAA
** *
75285987 AGGCTTTGTGCCGGTG-A-TAT-TTGGGCTTTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
75286025 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTGCCTAGC
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
75286066 AGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTACCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* * ** *
75286107 AGTCTTCGTTTCGGTGTATTATATCAGGTTTTGTACCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
75286148 AGGTTTTGTGCCGGTGTATTATGTCAGGCTT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTT
75286179 CGAGCATAGC
Statistics
Matches: 130, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
38 16 0.12
39 1 0.01
40 3 0.02
41 110 0.85
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.42
Consensus pattern (41 bp):
AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
Found at i:75286193 original size:82 final size:82
Alignment explanation
Indices: 75286036--75286195 Score: 214
Period size: 82 Copynumber: 2.0 Consensus size: 82
75286026 GGCTTTGTGC
* * * *
75286036 CGGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTA
1 CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
* *
75286101 CCTAGTAGTCTTCGTTT
66 CATAGCAGTCTTCGTTT
* * * *
75286118 CGGTGTATTATATCAGGTTTTGTACCTAGTAGGTTTTGTGCCGGTGTATTATGTCAGGCTTCG-A
1 CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
75286182 GCATAGCAGTCTTC
66 -CATAGCAGTCTTC
75286196 ATGCCAATGT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 1 0.01
82 66 0.99
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.41
Consensus pattern (82 bp):
CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
CATAGCAGTCTTCGTTT
Found at i:75286207 original size:82 final size:82
Alignment explanation
Indices: 75286039--75286217 Score: 198
Period size: 82 Copynumber: 2.2 Consensus size: 82
75286029 TTTGTGCCGG
* * * * * *
75286039 TGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTACCT
1 TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTACAT
* * ** **
75286104 AGTAGTCTTCGTTTCGG
66 AGCAGTCTTCATGCCAA
* * *
75286121 TGTATTATATCAGGTTTTGTACCTAGTAGGTTTTGTGCCGGTGTATTATGTCAGGCTTCG-AGCA
1 TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA-CA
75286185 TAGCAGTCTTCATGCCAA
65 TAGCAGTCTTCATGCCAA
*
75286203 TGTATTGTATCAGGT
1 TGTATTATATCAGGT
75286218 AAGTTGTACT
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 1 0.01
82 79 0.99
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (82 bp):
TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTACAT
AGCAGTCTTCATGCCAA
Found at i:75293236 original size:27 final size:25
Alignment explanation
Indices: 75293170--75293218 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
75293160 CCAAACCAAA
* *
75293170 CCTTTATGACAAATTTTCTGAAAAG
1 CCTTTGTGGCAAATTTTCTGAAAAG
75293195 CCTTTGTGGCAAATTTTCTGAAAA
1 CCTTTGTGGCAAATTTTCTGAAAA
75293219 AAGCTTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (25 bp):
CCTTTGTGGCAAATTTTCTGAAAAG
Found at i:75299673 original size:24 final size:24
Alignment explanation
Indices: 75299634--75299692 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
75299624 TGGATACTCC
* *
75299634 ATAGCT-CGTGTGAGTAGCATTGT
1 ATAGCTACGTTTGAGTAGCATCGT
75299657 ATAGCTACGTTTGAGTAGCATCGT
1 ATAGCTACGTTTGAGTAGCATCGT
*
75299681 GTAGCTACGTTT
1 ATAGCTACGTTT
75299693 CAACCCATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (24 bp):
ATAGCTACGTTTGAGTAGCATCGT
Found at i:75299741 original size:25 final size:25
Alignment explanation
Indices: 75299710--75299801 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
75299700 TAACTTGCGT
* *
75299710 GAGCATACCAATTTACAGCTCATGA
1 GAGCATACCGATCTACAGCTCATGA
* * *
75299735 GAGCATACTGATCTACAACTCATGT
1 GAGCATACCGATCTACAGCTCATGA
* * *
75299760 GAGCATA-CTATTTACAGCTCGTGA
1 GAGCATACCGATCTACAGCTCATGA
75299784 GAGCATACCGATCTACAG
1 GAGCATACCGATCTACAG
75299802 TTTGAGTGAG
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 18 0.34
25 35 0.66
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (25 bp):
GAGCATACCGATCTACAGCTCATGA
Found at i:75304760 original size:28 final size:27
Alignment explanation
Indices: 75304704--75304760 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
75304694 TGACAATGAT
* **
75304704 GACAAAATTTTTCATCTCTATAGTTGG
1 GACAAAATTTTGCATCTCTATAGAAGG
75304731 GACAAAATTTATGCATCTCTATCA-AAGG
1 GACAAAATTT-TGCATCTCTAT-AGAAGG
75304759 GA
1 GA
75304761 ATTAGGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 10 0.40
28 14 0.56
29 1 0.04
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (27 bp):
GACAAAATTTTGCATCTCTATAGAAGG
Found at i:75311626 original size:40 final size:40
Alignment explanation
Indices: 75311566--75311671 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
75311556 ACGACAAATT
* * *
75311566 GGCTACGTATGGCACTTAGTGTGCGATTCAAGATAGCTTG
1 GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
*
75311606 GGCTATGTATGACACCTAGTGTGCGATTCAAGATAGCTTC
1 GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
75311646 GGCTATGTATGGCACCTAGTGTGCGA
1 GGCTATGTATGGCACCTAGTGTGCGA
75311672 GGTTAAAACA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
Found at i:75314165 original size:18 final size:17
Alignment explanation
Indices: 75314142--75314186 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 17
75314132 GTCAACAGAG
75314142 CTTGCAAAGCCAATGAA
1 CTTGCAAAGCCAATGAA
75314159 TCTTGCAAAGCCAATGAA
1 -CTTGCAAAGCCAATGAA
75314177 CTTAGCAAAG
1 CTT-GCAAAG
75314187 TAAAGAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
CTTGCAAAGCCAATGAA
Found at i:75319259 original size:40 final size:40
Alignment explanation
Indices: 75319204--75319387 Score: 289
Period size: 40 Copynumber: 4.5 Consensus size: 40
75319194 CGACAATTCA
*
75319204 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
75319244 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTGG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
75319284 GCTATGTATGGCACCTAGTGTGTGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
75319324 GCTATGTATGGCACTTAGTGTGTGAGGTT-AAAATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGA--TTCAAGATAGCTTCG
*
75319365 GCTATGTTTTGGCACTTAGTGTG
1 GCTATG-TATGGCACTTAGTGTG
75319388 CGATAATTTG
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 100 0.75
41 17 0.13
42 17 0.13
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.35
Consensus pattern (40 bp):
GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
Found at i:75324614 original size:28 final size:28
Alignment explanation
Indices: 75324582--75324657 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 28
75324572 AATAAAAATC
*
75324582 AATAAAAATTATAAAAT-TATGAAATTTT
1 AATAAAAATTAAAAAATAT-TGAAATTTT
* *
75324610 AATAAAAA-TAAAAAATATTTAATTTTT
1 AATAAAAATTAAAAAATATTGAAATTTT
*
75324637 ATTAAAAATTAGAAAAATATT
1 AATAAAAATTA-AAAAATATT
75324658 ATAAAATTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 21 0.51
28 11 0.27
29 9 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (28 bp):
AATAAAAATTAAAAAATATTGAAATTTT
Found at i:75324665 original size:19 final size:18
Alignment explanation
Indices: 75324636--75324694 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 18
75324626 ATTTAATTTT
75324636 TATTAAAAATTAGAAAAA
1 TATTAAAAATTAGAAAAA
75324654 TATTATAAAATT-GTAAAAA
1 TATTA-AAAATTAG-AAAAA
75324673 TGA-TAAAATATATAGAAAAA
1 T-ATTAAAA-AT-TAGAAAAA
75324693 TA
1 TA
75324695 GAAAAATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
18 9 0.26
19 17 0.49
20 8 0.23
21 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.31
Consensus pattern (18 bp):
TATTAAAAATTAGAAAAA
Found at i:75324700 original size:20 final size:20
Alignment explanation
Indices: 75324668--75324706 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
75324658 ATAAAATTGT
75324668 AAAAATGATAAAATATATAG
1 AAAAATGATAAAATATATAG
75324688 AAAAATAGA-AAAATATATA
1 AAAAAT-GATAAAATATATA
75324707 AAATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAAATGATAAAATATATAG
Found at i:75324718 original size:39 final size:37
Alignment explanation
Indices: 75324613--75324748 Score: 102
Period size: 39 Copynumber: 3.6 Consensus size: 37
75324603 AAATTTTAAT
* *
75324613 AAAAATAAAAAATAT-TTAATTTTTATTAAAA-ATTAG
1 AAAAATAAAAAATATATAAAATTTTA-TAAAATATTAG
* * *
75324649 AAAAATATTATAAAAT-TGTAAAA-ATGATAAAATATATAG
1 AAAAATA--A-AAAATATATAAAATTTTATAAAATAT-TAG
*
75324688 AAAAATAGAAAAATATATAAAATTTTATAAAGTCATTAG
1 AAAAATA-AAAAATATATAAAATTTTATAAAAT-ATTAG
75324727 AAAATGATAAAAAA-ATATAAAA
1 AAAA--ATAAAAAATATATAAAA
75324749 ATTATCATAC
Statistics
Matches: 80, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
36 7 0.09
37 10 0.12
38 13 0.16
39 40 0.50
40 7 0.09
41 3 0.04
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (37 bp):
AAAAATAAAAAATATATAAAATTTTATAAAATATTAG
Found at i:75324953 original size:19 final size:19
Alignment explanation
Indices: 75324925--75324962 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
75324915 TTAAAGGGTC
75324925 TTTTTGATTCATTTTATAA
1 TTTTTGATTCATTTTATAA
* *
75324944 TTTTTTATTCTTTTTATAA
1 TTTTTGATTCATTTTATAA
75324963 AATTTTTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTGATTCATTTTATAA
Found at i:75324968 original size:19 final size:20
Alignment explanation
Indices: 75324926--75324968 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
75324916 TAAAGGGTCT
*
75324926 TTTTGATTCATTTTAT-AAT
1 TTTTGATTCATTTTATAAAA
* *
75324945 TTTTTATTCTTTTTATAAAA
1 TTTTGATTCATTTTATAAAA
75324965 TTTT
1 TTTT
75324969 TACAACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTGATTCATTTTATAAAA
Found at i:75325042 original size:19 final size:20
Alignment explanation
Indices: 75325020--75325057 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
75325010 ATTTTTGGTG
75325020 AAATTTAAAT-ATTTTTATT
1 AAATTTAAATAATTTTTATT
*
75325039 AAATTTTAATAATTTTTAT
1 AAATTTAAATAATTTTTAT
75325058 AACTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
AAATTTAAATAATTTTTATT
Found at i:75325092 original size:10 final size:9
Alignment explanation
Indices: 75324936--75325091 Score: 57
Period size: 9 Copynumber: 16.4 Consensus size: 9
75324926 TTTTGATTCA
75324936 TTTTATAATT
1 TTTTATAA-T
**
75324946 TTTTATTCT
1 TTTTATAAT
75324955 TTTTATAAAAT
1 TTTTAT--AAT
*
75324966 TTTTACAACT
1 TTTTATAA-T
*
75324976 TTTTACAAT
1 TTTTATAAT
*
75324985 TTTT-TACT
1 TTTTATAAT
* *
75324993 ATTTATATTT
1 TTTTATA-AT
*
75325003 TTTTCTAAT
1 TTTTATAAT
*
75325012 TTTTGGTGAA-
1 TTTT-AT-AAT
* *
75325022 ATTTAAATAT
1 TTTTATA-AT
75325032 TTTTATTAAAT
1 TTTTA-T-AAT
*
75325043 TTTAATAAT
1 TTTTATAAT
*
75325052 TTTTATAAC
1 TTTTATAAT
*
75325061 TTTTATTGAT
1 TTTTA-TAAT
*
75325071 TTTT-TATT
1 TTTTATAAT
75325079 TTTTATAAT
1 TTTTATAAT
75325088 TTTT
1 TTTT
75325092 TTGTCACATG
Statistics
Matches: 107, Mismatches: 26, Indels: 27
0.67 0.16 0.17
Matches are distributed among these distances:
8 12 0.11
9 44 0.41
10 36 0.34
11 14 0.13
12 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:75325388 original size:92 final size:89
Alignment explanation
Indices: 75325215--75325452 Score: 259
Period size: 92 Copynumber: 2.6 Consensus size: 89
75325205 TGCATATTGT
* * * * * *
75325215 AATTGAGTGGAAAAAAAAGTAAAGG-ATTAATTGC-TTTTTTTGAAAATTTTTAAGGGTC-TTTT
1 AATTGAGTGCAAAAAAAAGT-AAGGCCTTAATTGCTTTTTTTTTAAAA-GTTTGAGGG-CAATTT
* *
75325277 TGATACATTTTGATAGTTCAAGTACCC
63 TGATACATTTTGAAAGTTCAAATACCC
* *
75325304 AATTGAGT-TAAAAAAGAAGTAAGGCCTTAATTGCTTCTTTTTTTTTAAATGTTTGAGGGCAATT
1 AATTGAGTGCAAAAAA-AAGTAAGGCCTTAATTG---CTTTTTTTTTAAAAGTTTGAGGGCAATT
*
75325368 TTGATGCATTTTGAAAGTTCAAATACCC
62 TTGATACATTTTGAAAGTTCAAATACCC
* * *
75325396 AATTGAGTGCAAATAAAAGTAGGGGCTTAATTGCTTTTTTTTTAAAAGTTTGAGGGC
1 AATTGAGTGCAAAAAAAAGTAAGGCCTTAATTGCTTTTTTTTTAAAAGTTTGAGGGC
75325453 TTTTTACACC
Statistics
Matches: 126, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
88 10 0.08
89 42 0.33
91 1 0.01
92 58 0.46
93 15 0.12
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (89 bp):
AATTGAGTGCAAAAAAAAGTAAGGCCTTAATTGCTTTTTTTTTAAAAGTTTGAGGGCAATTTTGA
TACATTTTGAAAGTTCAAATACCC
Found at i:75327598 original size:29 final size:29
Alignment explanation
Indices: 75327564--75327638 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
75327554 GTCATTAGGG
75327564 ATTATCAGGCACTATGTGCCGGTGTTTAT
1 ATTATCAGGCACTATGTGCCGGTGTTTAT
*
75327593 ATTATCAGGCACTATGTGCTGGTGTTTAT
1 ATTATCAGGCACTATGTGCCGGTGTTTAT
*
75327622 ATTATCAGGTACTATGT
1 ATTATCAGGCACTATGT
75327639 ACCAATACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (29 bp):
ATTATCAGGCACTATGTGCCGGTGTTTAT
Found at i:75327697 original size:17 final size:17
Alignment explanation
Indices: 75327677--75327713 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
75327667 ACCTATGTTC
*
75327677 ATGTTGTATCAGGGACT
1 ATGTTGAATCAGGGACT
75327694 ATG-TGAATCAGGGACT
1 ATGTTGAATCAGGGACT
75327710 ATGT
1 ATGT
75327714 GTCGGTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (17 bp):
ATGTTGAATCAGGGACT
Found at i:75327705 original size:16 final size:16
Alignment explanation
Indices: 75327684--75327714 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
75327674 TTCATGTTGT
75327684 ATCAGGGACTATGTGA
1 ATCAGGGACTATGTGA
75327700 ATCAGGGACTATGTG
1 ATCAGGGACTATGTG
75327715 TCGGTGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (16 bp):
ATCAGGGACTATGTGA
Found at i:75339554 original size:40 final size:40
Alignment explanation
Indices: 75339460--75339604 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
75339450 TACTCGAATG
* *
75339460 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
75339501 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
75339541 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
75339581 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
75339605 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:75343063 original size:13 final size:13
Alignment explanation
Indices: 75343045--75343070 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75343035 ATTAAGTACC
75343045 ATTTTAAATCATA
1 ATTTTAAATCATA
75343058 ATTTTAAATCATA
1 ATTTTAAATCATA
75343071 TTTAGTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTTAAATCATA
Found at i:75347093 original size:21 final size:21
Alignment explanation
Indices: 75347069--75347110 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
75347059 ATATTTAAAC
75347069 ATAAAATATATAAT-TTTTTAT
1 ATAAAAT-TATAATATTTTTAT
* *
75347090 ATAACATTATTATATTTTTAT
1 ATAAAATTATAATATTTTTAT
75347111 CTTTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATAAAATTATAATATTTTTAT
Found at i:75351365 original size:79 final size:81
Alignment explanation
Indices: 75351254--75351438 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
75351244 GCTACTCGTT
* * * *
75351254 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTC-GGATCTTAACCC
* *
75351317 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
75351334 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCGG
*
75351398 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
75351414 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
75351439 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 31 0.34
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:75351438 original size:40 final size:40
Alignment explanation
Indices: 75351254--75351438 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
75351244 GCTACTCGTT
* * * *
75351254 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
75351294 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
75351334 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* *
75351373 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
75351414 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75351439 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.63
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:75359384 original size:79 final size:82
Alignment explanation
Indices: 75359273--75359457 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
75359263 GCTACTCGTT
* * *
75359273 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75359336 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
75359353 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
75359416 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
75359433 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75359458 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:75359457 original size:40 final size:40
Alignment explanation
Indices: 75359254--75359457 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
75359244 CGGAATGTAA
** *
75359254 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
75359294 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75359334 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75359373 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
75359413 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75359453 CCGGA
1 CCGGA
75359458 CATCATTCAA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75369704 original size:46 final size:46
Alignment explanation
Indices: 75369654--75369829 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
75369644 TGGTTGAGCA
75369654 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
75369700 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
75369745 CATTCGAACTCGTTGAGTTGAGTTCGAGTTCA-TTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAATG
* * * *
75369793 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75369830 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.54
47 30 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:75369815 original size:93 final size:93
Alignment explanation
Indices: 75369651--75369822 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
75369641 GGATGGTTGA
*
75369651 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
75369716 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
75369744 GCATTCGAACTCGTTGAGTTGAGTTCGAGTTCA-TTCATGGATGCGAATGCCCGAGCTCTTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAATGCCCGAACTCGTTGAG
75369808 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75369823 CTTATGGGTG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75373604 original size:13 final size:13
Alignment explanation
Indices: 75373586--75373610 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75373576 AATGAGACAT
75373586 TTGAAATGAATAC
1 TTGAAATGAATAC
75373599 TTGAAATGAATA
1 TTGAAATGAATA
75373611 TGTGATGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAAATGAATAC
Found at i:75385831 original size:40 final size:40
Alignment explanation
Indices: 75385603--75385830 Score: 375
Period size: 40 Copynumber: 5.7 Consensus size: 40
75385593 GCAAACACAT
* * * *
75385603 TTGCCTTCGGGTTTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75385643 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
75385683 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
75385723 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
75385763 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
75385803 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
75385831 TCCAATGCTC
Statistics
Matches: 175, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:75397128 original size:85 final size:85
Alignment explanation
Indices: 75396985--75397163 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
75396975 GGCCGGCCAT
75396985 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
75397050 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
75397070 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
75397135 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
75397155 GGGCATGGG
1 GAGCATGGG
75397164 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:75399410 original size:47 final size:47
Alignment explanation
Indices: 75399356--75399673 Score: 465
Period size: 47 Copynumber: 6.6 Consensus size: 47
75399346 GTATATTTGA
75399356 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
75399403 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
75399452 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
75399499 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
75399550 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * * *
75399597 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
75399644 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
75399674 TCCTGAAGGG
Statistics
Matches: 247, Mismatches: 18, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
47 157 0.64
49 45 0.18
51 45 0.18
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:75399548 original size:98 final size:96
Alignment explanation
Indices: 75399356--75399673 Score: 505
Period size: 98 Copynumber: 3.3 Consensus size: 96
75399346 GTATATTTGA
75399356 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
75399421 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
75399452 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--T
75399517 ATATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
75399550 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * * *
75399613 ATATATGTGACAGGGCCGAGTGGCCAACGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75399644 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
75399674 TCCTGAAGGG
Statistics
Matches: 209, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
94 54 0.26
96 62 0.30
98 93 0.44
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:75399617 original size:145 final size:146
Alignment explanation
Indices: 75399356--75399662 Score: 498
Period size: 145 Copynumber: 2.1 Consensus size: 146
75399346 GTATATTTGA
75399356 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
* *
75399417 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 G-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
*
75399482 GCCGAATGGCCAATGTG
130 GCCGAATGGCCAACGTG
* *
75399499 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
*
75399564 G-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
66 GATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
*
75399628 CCGAGTGGCCAACGTG
131 CCGAATGGCCAACGTG
*
75399644 ATGGATGTGAAAGTGTATA
1 ATGAATGTGAAAGTGTATA
75399663 AATGTGATAA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
143 15 0.10
145 92 0.61
147 45 0.30
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (146 bp):
ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
GATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
CCGAATGGCCAACGTG
Found at i:75401001 original size:40 final size:40
Alignment explanation
Indices: 75400937--75401122 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
75400927 GCTACTCGTT
** * *
75400937 CAAATGCCTTCAAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
75400977 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75401017 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75401057 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75401098 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75401123 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75402317 original size:56 final size:57
Alignment explanation
Indices: 75402250--75402370 Score: 217
Period size: 57 Copynumber: 2.1 Consensus size: 57
75402240 TATTAGTTTA
75402250 TTGCCCATGCTTCTTATTTTA-TTCTTCCATTAACACAACATGTGTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTGTCATGACATGTT
* *
75402306 TTGCCCATGCTTCTTATTTTATTTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTGTCATGACATGTT
75402363 TTGCCCAT
1 TTGCCCAT
75402371 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 21 0.34
57 41 0.66
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (57 bp):
TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTGTCATGACATGTT
Found at i:75406099 original size:23 final size:23
Alignment explanation
Indices: 75406069--75406116 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
75406059 TACACCCCGA
*
75406069 ATCAGGAAAAGGGTTTGTGATTT
1 ATCAGGAAAAGGGTTCGTGATTT
75406092 ATCAGGAAAAGGGTTCGTGATTT
1 ATCAGGAAAAGGGTTCGTGATTT
75406115 AT
1 AT
75406117 AGCGAGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.33
Consensus pattern (23 bp):
ATCAGGAAAAGGGTTCGTGATTT
Found at i:75410305 original size:47 final size:47
Alignment explanation
Indices: 75410254--75410358 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
75410244 TAGTATTAAT
* *
75410254 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAAAGTGTATA
75410301 TATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAAAGTGTATA
*
75410348 AATGTGATAAG
1 TATGTGATAAG
75410359 TCCCAAGGGT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAAAGTGTATA
Found at i:75412482 original size:40 final size:40
Alignment explanation
Indices: 75412422--75412657 Score: 382
Period size: 40 Copynumber: 5.9 Consensus size: 40
75412412 CTCGACGATG
*
75412422 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * * *
75412462 ATACAGGCTAAATCCCGAAGGGCATTCATGCTGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
75412502 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
75412542 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
75412582 ATCCGGGCTAAATCTCGAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
75412622 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
75412658 ATGTCTATTC
Statistics
Matches: 178, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:75419200 original size:57 final size:57
Alignment explanation
Indices: 75419116--75419230 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 57
75419106 AAAAATGGTG
* * * *
75419116 AAATGGATAAATAGGAAATATTTGGAAATGATTATGATTTTCTCAAAAAAGAACATGA
1 AAATGGAGAAATA-GAAATATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
* * * *
75419174 AAATGGAGAAAT-GAAATCATTCGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAATAGAAAT-ATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
75419231 CTTAAAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
56 5 0.10
57 32 0.67
58 11 0.23
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (57 bp):
AAATGGAGAAATAGAAATATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
Found at i:75422625 original size:29 final size:29
Alignment explanation
Indices: 75422590--75422646 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
75422580 GAACATAGTA
*
75422590 AAATTTCATGGAAGTATTGTGAAATGATG
1 AAATTTCATGGAAATATTGTGAAATGATG
*
75422619 AAATTTCATGTAAATATTGTGAAATGAT
1 AAATTTCATGGAAATATTGTGAAATGAT
75422647 AATAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (29 bp):
AAATTTCATGGAAATATTGTGAAATGATG
Found at i:75424075 original size:38 final size:39
Alignment explanation
Indices: 75423984--75424077 Score: 95
Period size: 39 Copynumber: 2.4 Consensus size: 39
75423974 ACCAATATGG
* *
75423984 CACCCAGTACCTTATCGGATAGTTCAAAGTAATAGTTGA
1 CACCCAGTACCTCATCGGATAGTCCAAAGTAATAGTTGA
** *
75424023 CACCCAGTGTCTCATCGGCCTAG-CCAAAGTAA-AGTT-A
1 CACCCAGTACCTCATCGG-ATAGTCCAAAGTAATAGTTGA
*
75424060 GTACCCAGTACCTCATCG
1 -CACCCAGTACCTCATCG
75424078 AATCTATCCG
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
37 1 0.02
38 18 0.40
39 23 0.51
40 3 0.07
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (39 bp):
CACCCAGTACCTCATCGGATAGTCCAAAGTAATAGTTGA
Found at i:75425630 original size:24 final size:24
Alignment explanation
Indices: 75425566--75425631 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
75425556 TATCCATTAG
* *
75425566 ATAATCATAA-TAATTATAAAACC
1 ATAATAATAATTAAATATAAAACC
**
75425589 ATAATAATAATTTTATATAAAACC
1 ATAATAATAATTAAATATAAAACC
*
75425613 ATGATAATAATTAAATATA
1 ATAATAATAATTAAATATA
75425632 TATAATACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
23 9 0.26
24 26 0.74
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAATAATAATTAAATATAAAACC
Found at i:75430950 original size:46 final size:46
Alignment explanation
Indices: 75430883--75431051 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
75430873 TGTAACCCGC
75430883 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
75430929 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
75430979 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
75431022 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
75431052 AGTTCGGATG
Statistics
Matches: 105, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:75431003 original size:93 final size:94
Alignment explanation
Indices: 75430891--75431063 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 94
75430881 GCCCATAAGT
* *
75430891 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75430956 CG-AGCTCGGATGCCTAGTTACATCTCAC
66 CGAAGCTCGGATGCCTAGTTACATCTCAC
*
75430984 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
75431049 CGAAGTTCGGATGCC
66 CGAAGCTCGGATGCC
75431064 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 64 0.85
94 11 0.15
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.20
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAAGCTCGGATGCCTAGTTACATCTCAC
Found at i:75431078 original size:47 final size:46
Alignment explanation
Indices: 75430886--75431078 Score: 144
Period size: 46 Copynumber: 4.2 Consensus size: 46
75430876 AACCCGCCCA
* ** ** **
75430886 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCC
* * *
75430931 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TACATC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATAT-C--C
* * * * **
75430980 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCC
75431024 ATAAGTGAACTCGGACTCAACTCAACGAAGTTCGGATGCCCAAATATCC
1 -TAAGTGAACTCGGACTCAACTCAACG-AGTTCGGATGCCC-AATATCC
75431073 T-AGTGA
1 TAAGTGA
75431079 CATGTCACTT
Statistics
Matches: 118, Mismatches: 19, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 58 0.49
47 49 0.42
48 3 0.03
49 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCC
Found at i:75436147 original size:24 final size:24
Alignment explanation
Indices: 75436083--75436148 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
75436073 TATCCATTAA
* *
75436083 ATAATCATAA-TAATTATAAAACC
1 ATAATAATAATTAAATATAAAACC
**
75436106 ATAATAATAATTTTATATAAAACC
1 ATAATAATAATTAAATATAAAACC
*
75436130 ATGATAATAATTAAATATA
1 ATAATAATAATTAAATATA
75436149 TATAATACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
23 9 0.26
24 26 0.74
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (24 bp):
ATAATAATAATTAAATATAAAACC
Found at i:75462911 original size:29 final size:29
Alignment explanation
Indices: 75462857--75463011 Score: 217
Period size: 29 Copynumber: 5.4 Consensus size: 29
75462847 AGTAAGTCCA
*
75462857 CACACTTAGTG-TTATATAATCAAACTCG
1 CACACTTAGTGCTTACATAATCAAACTCG
75462885 CACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGCTTACATAATCAAACTCG
75462914 CACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGCTTACATAATCAAACTCG
* *
75462943 CACACTTAGTGC-TATATAATCAAACTTG
1 CACACTTAGTGCTTACATAATCAAACTCG
* * * *
75462971 CACACTTAGTGCTATGCA-ATTTAAACCCG
1 CACACTTAGTGCT-TACATAATCAAACTCG
75463000 CACACTTAGTGC
1 CACACTTAGTGC
75463012 CAATCTCATG
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 37 0.32
29 76 0.66
30 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCTTACATAATCAAACTCG
Found at i:75462964 original size:57 final size:58
Alignment explanation
Indices: 75462857--75463011 Score: 217
Period size: 57 Copynumber: 2.7 Consensus size: 58
75462847 AGTAAGTCCA
*
75462857 CACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
* *
75462914 CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACTTG
1 CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
* * * *
75462971 CACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
75463012 CAATCTCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 58 0.65
58 31 0.35
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCG
Found at i:75466523 original size:37 final size:37
Alignment explanation
Indices: 75466462--75466540 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
75466452 TTATTACGAA
* * * *
75466462 GTCTTACCCGGGCATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
75466499 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
75466536 GTCTT
1 GTCTT
75466541 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:75466769 original size:47 final size:47
Alignment explanation
Indices: 75466658--75467137 Score: 579
Period size: 47 Copynumber: 9.7 Consensus size: 47
75466648 GCCCTTCGGG
*
75466658 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
75466708 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75466755 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
75466802 ACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
75466849 ACTTTCGCATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* ** *
75466896 ACTTTCGCATTCATCACATCGG-CACTTTCGCATTCATCACATCGGCCAT-TAGGC
1 ACTTTCACATTCATCACATCGGCCA-TTAGGCCTT-ATCACAT-----ATATA--C
** *
75466950 -CTTATCACATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTT-TCAC--AT-T-CA--TCACA-TCGGC-CAT----T---AGGCCTTATCACATATATAC
75467012 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
75467059 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75467106 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
75467138 ATACTATCAT
Statistics
Matches: 383, Mismatches: 19, Indels: 59
0.83 0.04 0.13
Matches are distributed among these distances:
46 2 0.01
47 271 0.71
48 7 0.02
49 34 0.09
50 4 0.01
52 2 0.01
53 5 0.01
54 7 0.02
55 3 0.01
56 7 0.02
57 1 0.00
58 4 0.01
59 1 0.00
60 7 0.02
61 2 0.01
62 6 0.02
63 7 0.02
64 2 0.01
68 7 0.02
69 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:75466924 original size:23 final size:23
Alignment explanation
Indices: 75466848--75466941 Score: 102
Period size: 23 Copynumber: 4.0 Consensus size: 23
75466838 CACATATATA
75466848 CACTTTCGCATTCATCACATCGG
1 CACTTTCGCATTCATCACATCGG
** ***
75466871 C-CATTAGGCATT-ATCACATATATA
1 CAC-TTTCGCATTCATCAC--ATCGG
75466895 CACTTTCGCATTCATCACATCGG
1 CACTTTCGCATTCATCACATCGG
75466918 CACTTTCGCATTCATCACATCGG
1 CACTTTCGCATTCATCACATCGG
75466941 C
1 C
75466942 CATTAGGCCT
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
22 6 0.11
23 34 0.61
24 10 0.18
25 6 0.11
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.31
Consensus pattern (23 bp):
CACTTTCGCATTCATCACATCGG
Found at i:75466931 original size:70 final size:69
Alignment explanation
Indices: 75466848--75466987 Score: 253
Period size: 70 Copynumber: 2.0 Consensus size: 69
75466838 CACATATATA
*
75466848 CACTTTCGCATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCGCATTCATCAC
1 CACTTTCGCATTCATCACATCGGCCATTAGGCATTATCACATATATACAC-TTCACATTCATCAC
75466913 ATCGG
65 ATCGG
*
75466918 CACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCACATTCATCACA
1 CACTTTCGCATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTCACATTCATCACA
75466983 TCGG
66 TCGG
75466987 C
1 C
75466988 CATTAGGCCT
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 19 0.28
70 49 0.72
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (69 bp):
CACTTTCGCATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTCACATTCATCACA
TCGG
Found at i:75467005 original size:163 final size:164
Alignment explanation
Indices: 75466754--75467081 Score: 604
Period size: 163 Copynumber: 2.0 Consensus size: 164
75466744 CACATATATA
75466754 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
75466819 ATCGGCCATTAGGCCTGATCACATATATACACTTTCGCATTCATCACATCGGCCATTAGGCATTA
66 ATCGGCCATTAGGCCTGATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTA
*
75466884 TCACATATATACACTTTCGCATTCATCACATCGG
131 TCACATATATACACTTTCACATTCATCACATCGG
*
75466918 CACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
* *
75466982 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCTGATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTA
75467047 TCACATATATACACTTTCACATTCATCACATCGG
131 TCACATATATACACTTTCACATTCATCACATCGG
75467081 C
1 C
75467082 CATTAGGCAT
Statistics
Matches: 159, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
163 110 0.69
164 49 0.31
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (164 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTGATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTA
TCACATATATACACTTTCACATTCATCACATCGG
Found at i:75467023 original size:116 final size:117
Alignment explanation
Indices: 75466801--75467034 Score: 416
Period size: 116 Copynumber: 2.0 Consensus size: 117
75466791 CACATATATA
*
75466801 CACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATATACACTTTCGCATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATATACACTTTCACATTCATCAC
*
75466866 ATCGGCCATTAGGCATTATCACATATATACACTTTCGCATTCATCACATCGG
66 ATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGG
* *
75466918 CACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-TTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATATACACTTTCACATTCATCAC
*
75466982 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 ATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGG
75467034 C
1 C
75467035 CATTAGGCCT
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
116 64 0.57
117 48 0.43
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (117 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGG
Found at i:75467125 original size:257 final size:259
Alignment explanation
Indices: 75466666--75467136 Score: 883
Period size: 257 Copynumber: 1.8 Consensus size: 259
75466656 GGACTTATCA
75466666 CATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGC
1 CATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATCACATCGGC
75466731 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
65 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
75466796 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATATACACTTTCGCATTC
130 ATATACACTTTCACATTCATCACATCGGCCATTAGGCATGATCACATATATACACTTTCACATTC
75466861 ATCACATCGGCCATTAGGCATTATCACATATATACACTTTCGCATTCATCACATCGGCACTTTCG
195 ATCACATCGGCCATTAGGCATTATCACATATATACACTTTCGCATTCATCACATCGGCACTTTCG
*
75466926 CATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACAC-TTCACATTCATCACATCGGCC
1 CATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCACATCGGCC
75466989 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
66 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
75467054 TATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCA
131 TATACACTTTCACATTCATCACATCGGCCATTAGGCATGATCACATATATACACTTTCACATTCA
75467119 TCACATCGGCCATTAGGC
196 TCACATCGGCCATTAGGC
75467137 CATACTATCA
Statistics
Matches: 207, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
257 166 0.80
258 10 0.05
260 31 0.15
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (259 bp):
CATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
TATACACTTTCACATTCATCACATCGGCCATTAGGCATGATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCATTATCACATATATACACTTTCGCATTCATCACATCGGCACTTTCG
Found at i:75475368 original size:29 final size:29
Alignment explanation
Indices: 75475313--75475469 Score: 212
Period size: 29 Copynumber: 5.5 Consensus size: 29
75475303 ATAGTAAGTC
* *
75475313 CGCACACTTAATG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
75475341 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
75475370 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
75475399 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
75475427 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
75475456 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75475470 CAATCTCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
28 38 0.33
29 76 0.66
30 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:75475423 original size:57 final size:58
Alignment explanation
Indices: 75475313--75475469 Score: 212
Period size: 57 Copynumber: 2.7 Consensus size: 58
75475303 ATAGTAAGTC
* *
75475313 CGCACACTTAATG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
75475370 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
75475427 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
75475470 CAATCTCATG
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 59 0.66
58 31 0.34
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:75485766 original size:27 final size:27
Alignment explanation
Indices: 75485736--75485913 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75485726 ATATTGAGTC
* * * *
75485736 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
75485763 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75485790 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75485818 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75485845 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75485872 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75485899 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75485914 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75485875 original size:82 final size:81
Alignment explanation
Indices: 75485757--75485912 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75485747 TGCTATATAA
* *
75485757 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75485822 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75485839 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75485903 CACTTAGTGC
65 CACTTAGTGC
75485913 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75494399 original size:17 final size:17
Alignment explanation
Indices: 75494379--75494424 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 17
75494369 TAAGATGATA
75494379 ATATTTAATATATAA-TT
1 ATATTTAAT-TATAATTT
75494396 ATATTT-ATTATAATTT
1 ATATTTAATTATAATTT
75494412 ATATATTAATTAT
1 ATAT-TTAATTAT
75494425 TATCAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 8 0.31
17 8 0.31
18 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTTAATTATAATTT
Found at i:75494505 original size:17 final size:18
Alignment explanation
Indices: 75494479--75494512 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75494469 TTTTTGTTTA
75494479 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
75494496 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
75494513 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:75507494 original size:22 final size:19
Alignment explanation
Indices: 75507468--75507516 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
75507458 ATATCGTTTC
75507468 AATTAAATTCTTGTCAAAAAAT
1 AATTAAATT-TT-T-AAAAAAT
*
75507490 AATT-AATTTTTATAAAAT
1 AATTAAATTTTTAAAAAAT
75507508 AATTAAATT
1 AATTAAATT
75507517 ATACTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 10 0.40
19 5 0.20
20 2 0.08
21 4 0.16
22 4 0.16
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
AATTAAATTTTTAAAAAAT
Found at i:75510036 original size:47 final size:47
Alignment explanation
Indices: 75509970--75510451 Score: 757
Period size: 47 Copynumber: 10.1 Consensus size: 47
75509960 GAAATGATAG
*
75509970 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75510017 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
75510066 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
75510115 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
75510162 TAAGGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75510209 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
75510258 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--GTGA
*
75510307 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75510354 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
75510401 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75510448 TAAG
1 TAAG
75510452 TCCCGAAGGG
Statistics
Matches: 408, Mismatches: 21, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
47 220 0.54
49 188 0.46
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75510297 original size:192 final size:192
Alignment explanation
Indices: 75509970--75510451 Score: 815
Period size: 192 Copynumber: 2.5 Consensus size: 192
75509960 GAAATGATAG
*
75509970 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
75510035 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
75510100 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
131 TGTATATATAAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* *
75510162 TAAGGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
75510227 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
75510292 TGTATATATAAGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATATAAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* * * * * * *
75510354 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
75510419 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
75510452 TCCCGAAGGG
Statistics
Matches: 272, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
190 9 0.03
191 1 0.00
192 262 0.96
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (192 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATAAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
Found at i:75510626 original size:37 final size:37
Alignment explanation
Indices: 75510570--75510648 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75510560 CCGAGCTCTA
* * *
75510570 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
75510607 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75510644 AAGAC
1 AAGAC
75510649 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75512922 original size:39 final size:40
Alignment explanation
Indices: 75512821--75512964 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
75512811 TCGAATGATG
* *
75512821 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
75512860 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
75512901 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
75512940 TCCGGGCTAAGTCCCGAAGGGCATT
1 TCCGGGCTAAGTCCCGAA-GGCATT
75512965 CATGCTAGTG
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
39 35 0.39
40 36 0.40
41 18 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:75512983 original size:40 final size:40
Alignment explanation
Indices: 75512939--75513095 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
75512929 GAGTTACTAA
*
75512939 ATCCGGGCTAAGTCCCGAAGGGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
75512979 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
75513019 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
75513059 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
75513096 CGTGTATTCG
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:75516710 original size:25 final size:25
Alignment explanation
Indices: 75516682--75516760 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
75516672 CTAATGGCCG
75516682 ATGTGATGAACGTGAAAGTGTATAT
1 ATGTGATGAACGTGAAAGTGTATAT
* *** ****
75516707 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAACGTGAAAGTGTATAT
75516729 ATGTGATGAACGTGAAAGTGTATAT
1 ATGTGATGAACGTGAAAGTGTATAT
75516754 ATGTGAT
1 ATGTGAT
75516761 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (25 bp):
ATGTGATGAACGTGAAAGTGTATAT
Found at i:75516732 original size:47 final size:47
Alignment explanation
Indices: 75516666--75517191 Score: 833
Period size: 47 Copynumber: 11.1 Consensus size: 47
75516656 GAAATGATAG
*
75516666 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75516713 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75516760 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
75516809 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
75516858 TAAGGCCTAATGGCCGATGT-ATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75516903 TAAGGCCTAATGGCCGATGT-ATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75516949 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
75516998 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--GTGA
*
75517047 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75517094 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
75517141 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75517188 TAAG
1 TAAG
75517192 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 17, Indels: 16
0.93 0.03 0.03
Matches are distributed among these distances:
45 45 0.10
46 29 0.06
47 193 0.43
48 15 0.03
49 172 0.38
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75516989 original size:189 final size:192
Alignment explanation
Indices: 75516666--75517191 Score: 891
Period size: 189 Copynumber: 2.8 Consensus size: 192
75516656 GAAATGATAG
*
75516666 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
75516731 GTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75516796 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
131 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
75516858 TAAGGCCTAATGGCCGATGT-ATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
75516921 GT-ATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75516985 TATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
131 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
*
75517047 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * * * *
75517112 GTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
75517177 TATA-A-ATGTGATAAG
131 TATATATATGTGATAAG
75517192 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
189 139 0.44
190 54 0.17
191 45 0.14
192 77 0.24
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (192 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAAGTGA
Found at i:75517366 original size:37 final size:37
Alignment explanation
Indices: 75517310--75517388 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75517300 CCGAGCTCTA
* * *
75517310 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
75517347 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75517384 AAGAC
1 AAGAC
75517389 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75519589 original size:45 final size:47
Alignment explanation
Indices: 75519538--75519629 Score: 116
Period size: 49 Copynumber: 2.0 Consensus size: 47
75519528 CATATATAAC
* * * *
75519538 TACACTTCTTTTATTT-TATT-TTAGAATAAGGTTTTTTAACCTTGT
1 TACACTTCATCTATTTATATTATTAGAATAAGGTGTTTCAACCTTGT
75519583 TACACTTCATCTATTTGATATTGATTAGAATAAGGTGTTTCAACCTT
1 TACACTTCATCTATTT-ATATT-ATTAGAATAAGGTGTTTCAACCTT
75519630 ACTACACTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
45 14 0.36
47 4 0.10
49 21 0.54
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (47 bp):
TACACTTCATCTATTTATATTATTAGAATAAGGTGTTTCAACCTTGT
Found at i:75527070 original size:5 final size:5
Alignment explanation
Indices: 75527060--75527084 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75527050 ACTACACTTC
75527060 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
75527085 GAATAAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:75528162 original size:29 final size:30
Alignment explanation
Indices: 75528130--75528188 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
75528120 TAATGTGTAT
* *
75528130 AATTG-CATCAAATTAAAGTTCATGTATAC
1 AATTGACATCAAACTAAAATTCATGTATAC
*
75528159 AATTGCACATTAAACTAAAATTCATGTATA
1 AATTG-ACATCAAACTAAAATTCATGTATA
75528189 ATTTTGAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
31 20 0.80
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (30 bp):
AATTGACATCAAACTAAAATTCATGTATAC
Found at i:75528191 original size:29 final size:27
Alignment explanation
Indices: 75528125--75528191 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
75528115 AAGTTTAATG
* *
75528125 TGTATAATTGCATCAAATTAAAGTTCA
1 TGTATAATTGCATCAAACTAAAATTCA
*
75528152 TGTATACAATTGCACATTAAACTAAAATTCA
1 TGTAT--AATTG--CATCAAACTAAAATTCA
75528183 TGTATAATT
1 TGTATAATT
75528192 TTGAGATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 5 0.15
29 9 0.27
31 19 0.58
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (27 bp):
TGTATAATTGCATCAAACTAAAATTCA
Found at i:75533323 original size:121 final size:121
Alignment explanation
Indices: 75533109--75533353 Score: 472
Period size: 121 Copynumber: 2.0 Consensus size: 121
75533099 TAATAAAGAT
75533109 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
1 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
75533174 TAAATCATCATAACTATACTTACTTTCAACACCTCGGCAATCATAGTAAATATATC
66 TAAATCATCATAACTATACTTACTTTCAACACCTCGGCAATCATAGTAAATATATC
*
75533230 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCTATGTTGAATTAATATTGAACATT
1 AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
*
75533295 TAAATCATCATAATTATACTTACTTTCAACACCTCGGCAATCATAGTAAATATATC
66 TAAATCATCATAACTATACTTACTTTCAACACCTCGGCAATCATAGTAAATATATC
75533351 AAT
1 AAT
75533354 TTTACATTGA
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 122 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.40
Consensus pattern (121 bp):
AATGTATTATTTATATACAAACTTACATACTTTCTCATTTCCATGTTGAATTAATATTGAACATT
TAAATCATCATAACTATACTTACTTTCAACACCTCGGCAATCATAGTAAATATATC
Found at i:75539303 original size:28 final size:28
Alignment explanation
Indices: 75539262--75539330 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
75539252 TTTGACAAAG
*
75539262 AAATTATAAAAAAATCAAT-AAAAATTAC
1 AAATTATAAAAAAAT-AATAAAAAATTAA
* * *
75539290 AAATTTTAATAAAATTATAAAAAATTAA
1 AAATTATAAAAAAATAATAAAAAATTAA
*
75539318 AAATAATAAAAAA
1 AAATTATAAAAAA
75539331 TTTGTAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (28 bp):
AAATTATAAAAAAATAATAAAAAATTAA
Done.