Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 238 of 318
Found at i:75539326 original size:17 final size:17
Alignment explanation
Indices: 75539300--75539332 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75539290 AAATTTTAAT
*
75539300 AAAATTATAAAAAATTA
1 AAAATAATAAAAAATTA
75539317 AAAATAATAAAAAATT
1 AAAATAATAAAAAATT
75539333 TGTAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATAATAAAAAATTA
Found at i:75540134 original size:16 final size:16
Alignment explanation
Indices: 75540115--75540147 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
75540105 AGTATTTTTT
75540115 TTTCTAAATTCACTAA
1 TTTCTAAATTCACTAA
75540131 TTTCTAAATTCACTAA
1 TTTCTAAATTCACTAA
75540147 T
1 T
75540148 AGCTTTCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTCTAAATTCACTAA
Found at i:75540176 original size:41 final size:41
Alignment explanation
Indices: 75540131--75540229 Score: 198
Period size: 41 Copynumber: 2.4 Consensus size: 41
75540121 AATTCACTAA
75540131 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATTTTT
1 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATTTTT
75540172 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATTTTT
1 TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATTTTT
75540213 TTTCTAAATTCACTAAT
1 TTTCTAAATTCACTAAT
75540230 TTCATAACCT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.44
Consensus pattern (41 bp):
TTTCTAAATTCACTAATAGCTTTCCACAACTAAGTATTTTT
Found at i:75543353 original size:26 final size:26
Alignment explanation
Indices: 75543244--75543344 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
75543234 CATGAAATTC
75543244 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
75543270 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
75543296 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
75543322 TTATCATGGAACATTTACCTAAC
1 TTATCATGAAACATTTACCTAAC
75543345 ATTTTATCAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:75545068 original size:15 final size:17
Alignment explanation
Indices: 75545043--75545084 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
75545033 GCGACTCTAC
75545043 TAATA-ATTTTTT-AT-
1 TAATATATTTTTTAATA
75545057 TAATATATTTTTTAATA
1 TAATATATTTTTTAATA
*
75545074 TAAAATATTTT
1 TAATATATTTT
75545085 ATTTCATCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 5 0.21
15 7 0.29
16 2 0.08
17 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TAATATATTTTTTAATA
Found at i:75545523 original size:7 final size:7
Alignment explanation
Indices: 75545511--75545537 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
75545501 AATTTGATTT
75545511 GATTTTA
1 GATTTTA
75545518 GATTTTA
1 GATTTTA
75545525 GATTTTA
1 GATTTTA
75545532 GATTTT
1 GATTTT
75545538 GGGTTTTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GATTTTA
Found at i:75546030 original size:6 final size:6
Alignment explanation
Indices: 75546019--75546045 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
75546009 GATTGGTGTT
75546019 GCAGGA GCAGGA GCAGGA GCAGGA GCA
1 GCAGGA GCAGGA GCAGGA GCAGGA GCA
75546046 TGAGAATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.48, T:0.00
Consensus pattern (6 bp):
GCAGGA
Found at i:75547722 original size:7 final size:7
Alignment explanation
Indices: 75547710--75547748 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
75547700 ATGTAGTGAT
75547710 TATAATA
1 TATAATA
*
75547717 TATAATC
1 TATAATA
*
75547724 TATACTA
1 TATAATA
75547731 TATAATA
1 TATAATA
75547738 TAT-ATA
1 TATAATA
75547744 TATAA
1 TATAA
75547749 GCATGAGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (7 bp):
TATAATA
Found at i:75547901 original size:23 final size:21
Alignment explanation
Indices: 75547861--75547922 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 21
75547851 TTAGTTAAAA
* *
75547861 AATTTACGTAAAATAAAAGTGAT
1 AATTTACATTAAA-AAAA-TGAT
*
75547884 AATTATACATTTAAAAAAATTAT
1 AATT-TACA-TTAAAAAAATGAT
75547907 AATTTACATTAAAAAA
1 AATTTACATTAAAAAA
75547923 TAATTAGAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.24
22 4 0.12
23 11 0.32
24 7 0.21
25 4 0.12
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (21 bp):
AATTTACATTAAAAAAATGAT
Found at i:75547927 original size:23 final size:22
Alignment explanation
Indices: 75547882--75547943 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
75547872 AATAAAAGTG
*
75547882 ATAATTATACATTTAAAAAAATT
1 ATAATT-TACATTAAAAAAAATT
75547905 ATAATTTACATTAAAAAATAATT
1 ATAATTTACATTAAAAAA-AATT
*
75547928 AGAATTT-CA-TAAAAAA
1 ATAATTTACATTAAAAAA
75547944 GTATGGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.19
22 13 0.36
23 16 0.44
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (22 bp):
ATAATTTACATTAAAAAAAATT
Found at i:75551597 original size:23 final size:24
Alignment explanation
Indices: 75551571--75551627 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
75551561 CACCAAAAGG
*
75551571 TTATTTTATTGTTAAAACTA-AT-A
1 TTATTTTATTG-TAAAAATATATAA
*
75551594 TTATTTAATTGTAAAAATATATAA
1 TTATTTTATTGTAAAAATATATAA
*
75551618 ATATTTTATT
1 TTATTTTATT
75551628 TATAAACAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 7 0.25
23 12 0.43
24 9 0.32
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
TTATTTTATTGTAAAAATATATAA
Found at i:75560099 original size:20 final size:20
Alignment explanation
Indices: 75560012--75560099 Score: 83
Period size: 20 Copynumber: 4.4 Consensus size: 20
75560002 TTTATATTCG
*
75560012 TATAAACTA-TAATTCATTCA
1 TATAAAC-AGTAATTCATCCA
* *
75560032 TATAACCAGTAGTTCAT-CA
1 TATAAACAGTAATTCATCCA
*
75560051 GTA-ATAACAGTAATTCATCCG
1 -TATA-AACAGTAATTCATCCA
*
75560072 TATCAACAGTAATTCATCCA
1 TATAAACAGTAATTCATCCA
75560092 TATAAACA
1 TATAAACA
75560100 CATATCTTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
19 4 0.07
20 50 0.91
21 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (20 bp):
TATAAACAGTAATTCATCCA
Found at i:75560302 original size:23 final size:23
Alignment explanation
Indices: 75560245--75560381 Score: 100
Period size: 23 Copynumber: 5.8 Consensus size: 23
75560235 GCCATGATCG
*
75560245 GTAAGCTCCTCTTGAGCTGATGAACA
1 GTAAGCT-CTATTGAGCTGA--AACA
*
75560271 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
** *
75560294 GTAAGCTCTATCAAGCTG-AATA
1 GTAAGCTCTATTGAGCTGAAACA
* *
75560316 GTAAGCTC-ATACGAGTTGAAACA
1 GTAAGCTCTAT-TGAGCTGAAACA
* * * *
75560339 ATAAGCTCCAATGAGCTGAAAATA
1 GTAAGCTCTATTGAGCTG-AAACA
75560363 GTAAGCTCT-TATGAGCTGA
1 GTAAGCTCTAT-TGAGCTGA
75560382 TATATCGGTA
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
21 2 0.02
22 15 0.17
23 35 0.39
24 19 0.21
25 11 0.12
26 7 0.08
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:75560354 original size:68 final size:71
Alignment explanation
Indices: 75560267--75560403 Score: 165
Period size: 68 Copynumber: 1.9 Consensus size: 71
75560257 TGAGCTGATG
* * * *
75560267 AACAGTAAGCTCTATTGAGCTG-AAACGGTAAGCTC-TATCAAGCTGA-ATA-GTAAGCTCATAC
1 AACAATAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTAT-AAGCTGATATACGTAAGCTCATAC
75560328 GAGTTGA
65 GAGTTGA
* *
75560335 AACAATAAGCTCCAATGAGCTGAAAATAGTAAGCTCTTATGAGCTGATATATCGGTAAGCTCATA
1 AACAATAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTATAAGCTGATATA-C-GTAAGCTCATA
75560400 CGAG
64 CGAG
75560404 CTGTGGTGAG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
68 19 0.33
69 17 0.30
70 6 0.11
73 15 0.26
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (71 bp):
AACAATAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTATAAGCTGATATACGTAAGCTCATACG
AGTTGA
Found at i:75565135 original size:12 final size:12
Alignment explanation
Indices: 75565118--75565144 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
75565108 AATATTTATT
75565118 GTACAATACTAA
1 GTACAATACTAA
75565130 GTACAATACTAA
1 GTACAATACTAA
75565142 GTA
1 GTA
75565145 TTTATATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (12 bp):
GTACAATACTAA
Found at i:75570949 original size:48 final size:48
Alignment explanation
Indices: 75570889--75571211 Score: 242
Period size: 46 Copynumber: 6.8 Consensus size: 48
75570879 CCACATTATA
* * * * * *
75570889 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCACCGGTATTGAGACG
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG
*
75570937 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATG
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG
*
75570983 TA-AGCTAGTGTAAGA-CATGTCTGGGACAT-ACATCGGC-TACGAGATG
1 -AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATG
* * * *
75571029 TG-TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CG-TAT-
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG
* * *
75571072 AGAGGTGTCAGTGTAAGACCGTGTCTGGGACATGGCATCGGCA-CGGATATATG
1 AGA-G-CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-G--AGATG
* * ** * **
75571125 AAAGCTAGTGTAAGACCATGTTTGGGACATGGTGTCGGCCTCGATTTCG
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAT-G
*
75571174 ATAG-TCAGTGTAAGACCATGTCTGGGAGC-TGGCATCGG
1 AGAGCT-AGTGTAAGACCATGTCTGGGA-CATGGCATCGG
75571212 TATTATACCC
Statistics
Matches: 225, Mismatches: 30, Indels: 39
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 17 0.08
46 60 0.27
47 14 0.06
48 51 0.23
49 32 0.14
50 31 0.14
51 2 0.01
52 4 0.02
53 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (48 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG
Found at i:75571163 original size:98 final size:99
Alignment explanation
Indices: 75571033--75571211 Score: 249
Period size: 99 Copynumber: 1.8 Consensus size: 99
75571023 GAGATGTGTC
*
75571033 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CACG-TATAGAGGT-GTCAGTGTAAGACCGTG
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGA--TAGTCAGTGTAAGACCATG
75571095 TCTGGGA-CATGGCATCGGCACGGATATATGAAAGCT
64 TCTGGGAGC-TGGCATCGGCACGGATATATGAAAGCT
** * * *
75571131 AGTGTAAGACCATGTTTGGGACATGGTGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGATAGTCAGTGTAAGACCATGTC
75571196 TGGGAGCTGGCATCGG
66 TGGGAGCTGGCATCGG
75571212 TATTATACCC
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
98 31 0.44
99 35 0.49
100 5 0.07
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (99 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATAGATAGTCAGTGTAAGACCATGTC
TGGGAGCTGGCATCGGCACGGATATATGAAAGCT
Found at i:75571210 original size:99 final size:97
Alignment explanation
Indices: 75570894--75571211 Score: 245
Period size: 99 Copynumber: 3.3 Consensus size: 97
75570884 TTATAAGAGC
* * * ** * * *
75570894 CAGTGTAAGACCATGTTTGGGACATGGCACCGGTATTG--AGACGAGAGCTAGTGTAAGA-CATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
* **
75570956 TCTGGGACAT-GCATCGGC-C-TCGAGA-TGT
66 TTTGGGACATGGCATCGGCACGTATAGAGTGT
* * * *
75570984 AAGCTAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCTAC-GAGATGTG---TC-AGTGTAAGA
1 ---C-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATATGAAAGCTAGTGTAAGA
75571042 CCATGTTTGGGACATGGCATCGGCACGTATAGAGGTGT
61 CCATGTTTGGGACATGGCATCGGCACGTATAGA-GTGT
*
75571080 CAGTGTAAGACCGTGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
** * * *
75571145 TTTGGGACATGGTGTCGGCCTCGATTTCGA-TAGT
66 TTTGGGACATGGCATCGG-CACG-TATAGAGT-GT
75571179 CAGTGTAAGACCATGTCTGGGAGC-TGGCATCGG
1 CAGTGTAAGACCATGTCTGGGA-CATGGCATCGG
75571212 TATTATACCC
Statistics
Matches: 181, Mismatches: 23, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
90 9 0.05
91 14 0.08
92 23 0.13
93 32 0.18
94 28 0.15
96 3 0.02
97 1 0.01
98 31 0.17
99 35 0.19
100 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (97 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATATGAAAGCTAGTGTAAGACCATG
TTTGGGACATGGCATCGGCACGTATAGAGTGT
Found at i:75575577 original size:40 final size:40
Alignment explanation
Indices: 75575533--75575764 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
75575523 ATAACCACAA
75575533 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75575573 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
75575613 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75575653 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
75575693 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75575733 GCACAAATGCCTTCGGGTCTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
75575765 CATTCAAATG
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.04
40 149 0.92
41 7 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:75575640 original size:80 final size:80
Alignment explanation
Indices: 75575513--75575763 Score: 414
Period size: 80 Copynumber: 3.1 Consensus size: 80
75575503 TCTTCGGAAT
* * * * * * *
75575513 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
75575577 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
75575592 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
75575657 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
75575672 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
75575737 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
75575752 TTAGCCCAGATA
1 TTAGCCCGGATA
75575764 TCATTCAAAT
Statistics
Matches: 161, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
79 4 0.02
80 157 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:75580059 original size:14 final size:16
Alignment explanation
Indices: 75580040--75580078 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
75580030 AAGAAAATGA
*
75580040 TGATATATGACA-A-G
1 TGATATATGAAATAGG
75580054 TGATATATGAAATAGG
1 TGATATATGAAATAGG
75580070 TGATATATG
1 TGATATATG
75580079 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (16 bp):
TGATATATGAAATAGG
Found at i:75584748 original size:13 final size:14
Alignment explanation
Indices: 75584730--75584758 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75584720 AAGTGATTTA
75584730 AAGGTT-AATTAGT
1 AAGGTTAAATTAGT
75584743 AAGGTTAAATTAGT
1 AAGGTTAAATTAGT
75584757 AA
1 AA
75584759 TTCAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (14 bp):
AAGGTTAAATTAGT
Found at i:75586960 original size:47 final size:47
Alignment explanation
Indices: 75586891--75587252 Score: 228
Period size: 47 Copynumber: 7.7 Consensus size: 47
75586881 GGTATAATAC
* *
75586891 CGATGCCATATCCCAGAGATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * *
75586938 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCGAAATCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATCAAGT
** * **
75586986 CTGACACCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCGTGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--AT-CAAGT
* * * * * *
75587037 CGATGCCATGTCTCAGACATGGTCTTACACTGACACCTCTAT-ACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * ** *
75587083 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACAT-CTTGTAGC
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * *
75587131 CGATG-CATGTCCCATACAT-GTCTTACACTAGCTCTTTTC-TCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ATCCATCAA-GT
* * *
75587177 CGAAG-CATGTCCTAGACATGGTCTTACAGTGGCTC-T-CAT-AATGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA----GT
*
75587224 CGATG-CATGTCCCAGACAT-ATCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
75587253 AGCACACATA
Statistics
Matches: 251, Mismatches: 45, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
44 15 0.06
45 18 0.07
46 36 0.14
47 66 0.26
48 46 0.18
49 33 0.13
50 31 0.12
51 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:75587103 original size:48 final size:48
Alignment explanation
Indices: 75586890--75587159 Score: 225
Period size: 48 Copynumber: 5.7 Consensus size: 48
75586880 GGGTATAATA
* * * * * *
75586890 CCGATGCCATATCCCAGAGATGGTCTTACACTGGCTCATCCATCAAGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAT-ACGTG
* * * * *
75586938 -CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATCGAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATA-CG-TG
* ** * * *
75586986 CTGACACCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATCCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATC-TATACGTG
* * *
75587036 TCGATGCCATGTCTCAGACATGGTCTTACACTGACACCTCTATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGTG
75587084 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCT-T--GTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGT-G
*
75587130 CCGATG-CATGTCCCATACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
75587160 AGCTCTTTTC
Statistics
Matches: 183, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.05
45 16 0.09
46 12 0.07
47 33 0.18
48 47 0.26
49 30 0.16
50 29 0.16
51 4 0.02
52 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGTG
Found at i:75589296 original size:16 final size:16
Alignment explanation
Indices: 75589275--75589313 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
75589265 GTTTGGTTCA
*
75589275 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
75589291 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
75589307 CTGTAAT
1 CTGTAAT
75589314 CAGTAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:75589532 original size:26 final size:27
Alignment explanation
Indices: 75589488--75589567 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
75589478 TAAATAAGAT
75589488 TATTATTGAAA-ATAATTTAATAATAAA
1 TATTATT-AAATATAATTTAATAATAAA
* * * *
75589515 TATT-TTAACTATATTTTAA-CATAAT
1 TATTATTAAATATAATTTAATAATAAA
*
75589540 TATTATTAAATATAATTTAATAAAAAA
1 TATTATTAAATATAATTTAATAATAAA
75589567 T
1 T
75589568 TTAATTTAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 10 0.24
26 23 0.56
27 8 0.20
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (27 bp):
TATTATTAAATATAATTTAATAATAAA
Found at i:75589572 original size:17 final size:17
Alignment explanation
Indices: 75589547--75589579 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75589537 AATTATTATT
75589547 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
*
75589564 AAATTTAATTTAATAA
1 AAATATAATTTAATAA
75589580 CATTCTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:75589599 original size:55 final size:51
Alignment explanation
Indices: 75589486--75589602 Score: 137
Period size: 52 Copynumber: 2.2 Consensus size: 51
75589476 ATTAAATAAG
* * *
75589486 ATTATTATTGAAAATAATTTAATAATAAATATTTTAACTATATTTTAACATA
1 ATTATTATT-AAAATAATTTAATAAAAAATAATTTAACTACATTTTAACATA
*
75589538 ATTATTATTAAATATAATTTAATAAAAAATTTAATTTAA-TAACATTCTTAATATA
1 ATTATTATTAAA-ATAATTTAATAAAAAA--TAATTTAACT-ACATT-TTAACATA
75589593 ATTATTATTA
1 ATTATTATTA
75589603 TATGAATTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
51 3 0.05
52 24 0.43
53 1 0.02
54 11 0.20
55 17 0.30
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (51 bp):
ATTATTATTAAAATAATTTAATAAAAAATAATTTAACTACATTTTAACATA
Found at i:75590034 original size:43 final size:43
Alignment explanation
Indices: 75589973--75590057 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
75589963 TACAAATACA
75589973 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
* *
75590016 TAAGGCAACCAATTTGATGTCTTTTCTAACTTGATACCCAAC
1 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAAC
75590058 TAATTCCTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
Found at i:75593271 original size:3 final size:3
Alignment explanation
Indices: 75593263--75593291 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
75593253 ACACTTAAAA
75593263 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
75593292 TAATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:75594326 original size:68 final size:70
Alignment explanation
Indices: 75594204--75594362 Score: 205
Period size: 68 Copynumber: 2.3 Consensus size: 70
75594194 GGATAGAAGC
*
75594204 ATGAAAAAGAGAGAGATGGATGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGATTAAGA
1 ATGAAAAAGAG-GAGAAGGATGGAAGGAAATGGG-AGAAGAATGAAAAAAAGAAGATGATTAAGA
*
75594269 TGTGACA
64 CGTGACA
* * * *
75594276 ATGAAAAAGAGGAGAAGGTTGGAAGGAAAT-GG-GAAGAATGAAAAAAAGAAGTTGCTTCAGACG
1 ATGAAAAAGAGGAGAAGGATGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGATTAAGACG
*
75594339 TGAGA
66 TGACA
*
75594344 ACGAAAAAGAGGGAGAAGG
1 ATGAAAAAGA-GGAGAAGG
75594363 GTAAAGTTGA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
68 40 0.51
69 8 0.10
70 2 0.03
71 17 0.22
72 11 0.14
ACGTcount: A:0.50, C:0.03, G:0.34, T:0.13
Consensus pattern (70 bp):
ATGAAAAAGAGGAGAAGGATGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGATTAAGACG
TGACA
Found at i:75618284 original size:36 final size:36
Alignment explanation
Indices: 75618237--75618305 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
75618227 AGAATATAGA
75618237 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAAGCT
1 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAAGCT
75618273 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAA
1 AGATGTTTTGGGCAGTGTGTCAATTATGAAAAA
75618306 TGTACTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (36 bp):
AGATGTTTTGGGCAGTGTGTCAATTATGAAAAAGCT
Found at i:75619441 original size:18 final size:18
Alignment explanation
Indices: 75619418--75619456 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
75619408 ATATGGCCAT
75619418 AGTCGATAACTAATTCAA
1 AGTCGATAACTAATTCAA
75619436 AGTCGATAACTAATTCAA
1 AGTCGATAACTAATTCAA
75619454 AGT
1 AGT
75619457 TTATAGACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (18 bp):
AGTCGATAACTAATTCAA
Found at i:75620894 original size:12 final size:12
Alignment explanation
Indices: 75620877--75620908 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
75620867 CTATCTCTTA
75620877 GCTTTGAAACAT
1 GCTTTGAAACAT
75620889 GCTTTGAAACAT
1 GCTTTGAAACAT
*
75620901 ACTTTGAA
1 GCTTTGAA
75620909 TCGCTCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (12 bp):
GCTTTGAAACAT
Found at i:75622042 original size:15 final size:15
Alignment explanation
Indices: 75622024--75622059 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
75622014 TCCCAGAATT
75622024 GAAACTTTATTAATG
1 GAAACTTTATTAATG
75622039 GAAACTTTATTAATG
1 GAAACTTTATTAATG
*
75622054 AAAACT
1 GAAACT
75622060 AAATTGTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (15 bp):
GAAACTTTATTAATG
Found at i:75624070 original size:47 final size:47
Alignment explanation
Indices: 75623963--75624320 Score: 279
Period size: 47 Copynumber: 7.6 Consensus size: 47
75623953 TTTGTGCGCC
* * *
75623963 AGTGTAAGACATGTCTGGGACATACTTCGGC--CACATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCACA-GATGAGAGCT
* * *
75624009 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATC-CAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAGATGAGAGCT
* * * *
75624057 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-AC-TATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCACAGATGAGAGCT
* * *
75624103 AGTGTAAGACCATGTCTGGGACATGGCATTGGCA-CAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCACAGATGAGAGCT
* * * * *
75624151 AGCGTAAGACATGTCTGGGACATGCATAGGCCTCGACAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATC-ACAGATGAGAGCT
** * * * *
75624198 AGTGTAAGACATGTCTGGGACACACATCGGC-TAAGAGTTG-TA-CT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCACAGATGAGAGCT
* * * * *
75624242 AGTGTAAGACATGTCTAGGACATGCATCAGCA-CGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAC--AGATGAGAGCT
75624290 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
75624321 AAATATATCC
Statistics
Matches: 244, Mismatches: 48, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
44 28 0.11
45 5 0.02
46 40 0.16
47 96 0.39
48 54 0.22
49 15 0.06
50 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCACAGATGAGAGCT
Found at i:75624129 original size:94 final size:93
Alignment explanation
Indices: 75623963--75624320 Score: 376
Period size: 94 Copynumber: 3.8 Consensus size: 93
75623953 TTTGTGCGCC
* * * * * *
75623963 AGTGTAAGACATGTCTGGGACATACTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
75624028 GATATGGCATCGGCATCCAGACGAGGGCT
66 GACATGGCATCGGCATCAAGA-GAGTGCT
*
75624057 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
75624122 GACATGGCATTGGCA-CAGAGATGAGTGCT
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
*
75624151 AGCGTAAGACATGTCTGGGACATGCAT-AGGCC-TCGAC-A-GAGATAGCCAGTGTAAGA-CATG
1 AGTGTAAGACATGTCTGGGACATGCATCA-GCCAT--ACTATGAG--AGCCAGTGTAAGACCATG
** * *
75624211 TCTGGGACA-CACATCGGC-T-AAGAGTTGTACT
61 TCTGGGACATGGCATCGGCATCAAGAG-AGTGCT
* *
75624242 AGTGTAAGACATGTCTAGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
75624306 TGGGACATGGCATCG
63 TGGGACATGGCATCG
75624321 AAATATATCC
Statistics
Matches: 224, Mismatches: 23, Indels: 34
0.80 0.08 0.12
Matches are distributed among these distances:
90 1 0.00
91 33 0.15
92 15 0.07
93 27 0.12
94 132 0.59
95 16 0.07
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:75631141 original size:47 final size:45
Alignment explanation
Indices: 75631072--75631431 Score: 214
Period size: 47 Copynumber: 7.7 Consensus size: 45
75631062 GATTTGTGCG
* *
75631072 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGGA
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGGA
* *
75631118 CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGGA
* * * * * * *
75631166 CTACTGTAAGACATGTTTGGGACATGCATCAGCCATACTATGA-TA
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGGA
* * *
75631211 GCTAGTGTAAGACCATGTATGGGACATGGCATCGGCACAGAGATGAGTG-
1 -CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAG-GA
* * *
75631260 CCAATGTAAGACATGTCTGGGACATGCATCGGCCAC-GACAGAGATA
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGA-TGAG-GA
* * * * * *
75631306 GCATGTGTAAGACGTGTCTGGGACACGCATCAGCTA-AGAGTTG-TG-
1 CCA-GTGTAAGACATGTCTGGGACATGCATCGGCCACAGA--TGAGGA
* ** * *
75631351 CTAGTGTAAGACATGTCTGGGACATGCATCAACACGCGTATATGA-GA
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--AGATGAGGA
75631398 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -CCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
75631432 AAAATATATC
Statistics
Matches: 242, Mismatches: 46, Indels: 48
0.72 0.14 0.14
Matches are distributed among these distances:
44 29 0.12
45 7 0.03
46 43 0.18
47 86 0.36
48 53 0.22
49 19 0.08
50 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGGA
Found at i:75631237 original size:94 final size:93
Alignment explanation
Indices: 75631076--75631431 Score: 343
Period size: 94 Copynumber: 3.8 Consensus size: 93
75631066 TGTGCGCCAG
* * * * *
75631076 TGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGA-GGACCAGTGTAAGACCATGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAG-CCAGTGTAAGACCATGTCTGGG
* * *
75631140 ACATGGCATCGGCATCCAGACGAGGGCTAC
65 ACATGGCATCGGCATCAAGA-GAGTGCTAA
* * *
75631170 TGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATAGCTAGTGTAAGACCATGTATGGGA
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGGA
*
75631235 CATGGCATCGGCA-CAGAGATGAGTGCCAA
66 CATGGCATCGGCATCA-AGA-GAGTGCTAA
* * * *
75631264 TGTAAGACATGTCTGGGACATGCATCGGCCACGAC-AGAGATAG-CATGTGTAAGA-CGTGTCTG
1 TGTAAGACATGTCTGGGACATGCATCAGCCA-TACTA-TGATAGCCA-GTGTAAGACCATGTCTG
* * * *
75631326 GGACA-CGCATCAGC-T-AAGAGTTGTGCTAG
63 GGACATGGCATCGGCATCAAGAG-AGTGCTAA
* * *
75631355 TGTAAGACATGTCTGGGACATGCATCAACACGCGTA-TATGAGAGCCAGTGTAAGACCATGTCTG
1 TGTAAGACATGTCTGGGACATGCATC-A-GC-CATACTATGATAGCCAGTGTAAGACCATGTCTG
75631419 GGACATGGCATCG
63 GGACATGGCATCG
75631432 AAAATATATC
Statistics
Matches: 214, Mismatches: 34, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
90 1 0.00
91 34 0.16
92 13 0.06
93 25 0.12
94 125 0.58
95 16 0.07
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (93 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATCAAGAGAGTGCTAA
Found at i:75631328 original size:141 final size:137
Alignment explanation
Indices: 75631074--75631431 Score: 379
Period size: 141 Copynumber: 2.6 Consensus size: 137
75631064 TTTGTGCGCC
* *
75631074 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACA-TTATGAGGACCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACAGATATGAGG-CCAGTGTAAGACCATGTCTG
* * * * *
75631138 GGACATGGCATCGGCATCCAGACGAGGGCTACTGTAAGACATGTTTGGGACATGCATCAGC-CAT
64 GGACATGGCATCGGCATCCAGACGAGAGCTACTGTAAGACATGTCTGGGACACGCATCAGCTAAG
75631202 ACTATGATAGCT
129 ACT-TG-T-GCT
* * *
75631214 AGTGTAAGACCATGTATGGGACATGGCATCGGCACAGAGATGAGTGCCAATGTAAGA-CATGTCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGATATGAG-GCCAGTGTAAGACCATGTCT
* * *
75631278 GGGACAT-GCATCGGCCA-CGACAGA-GATAGC-ATGTGTAAGACGTGTCTGGGACACGCATCAG
63 GGGACATGGCATCGG-CATC--CAGACGAGAGCTA-CTGTAAGACATGTCTGGGACACGCATCAG
*
75631339 CTAAGAGTTGTGCT
124 CTAAGACTTGTGCT
** *
75631353 AGTGTAAGACATGTCTGGGACATGCATCAACACGCGTATATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG-ATATGAG-GCCAGTGTAAGACCATGTCT
75631418 GGGACATGGCATCG
63 GGGACATGGCATCG
75631432 AAAATATATC
Statistics
Matches: 184, Mismatches: 21, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
137 8 0.04
138 14 0.08
139 29 0.16
140 33 0.18
141 71 0.39
142 28 0.15
143 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (137 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAGATATGAGGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCATCCAGACGAGAGCTACTGTAAGACATGTCTGGGACACGCATCAGCTAAGAC
TTGTGCT
Found at i:75636139 original size:15 final size:15
Alignment explanation
Indices: 75636121--75636151 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75636111 GTCAAAGAGG
75636121 AATTTTCCAAAGTTA
1 AATTTTCCAAAGTTA
*
75636136 AATTTTCTAAAGTTA
1 AATTTTCCAAAGTTA
75636151 A
1 A
75636152 CTCCAGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (15 bp):
AATTTTCCAAAGTTA
Found at i:75637561 original size:30 final size:30
Alignment explanation
Indices: 75637527--75637594 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
75637517 CGAGCGCAAT
* *
75637527 CAACAAAGGCAAACTTTCTAATTCTTAAAC
1 CAACAAACGCAAACTTCCTAATTCTTAAAC
***
75637557 CAACAAACTTTAACTTCCTAATTCTTAAAC
1 CAACAAACGCAAACTTCCTAATTCTTAAAC
75637587 CAACAAAC
1 CAACAAAC
75637595 TCTATCATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.26
Consensus pattern (30 bp):
CAACAAACGCAAACTTCCTAATTCTTAAAC
Found at i:75637595 original size:30 final size:30
Alignment explanation
Indices: 75637538--75637595 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
75637528 AACAAAGGCA
*
75637538 AACTTTCTAATTCTTAAACCAACAAACTTT
1 AACTTCCTAATTCTTAAACCAACAAACTTT
75637568 AACTTCCTAATTCTTAAACCAACAAACT
1 AACTTCCTAATTCTTAAACCAACAAACT
75637596 CTATCATAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (30 bp):
AACTTCCTAATTCTTAAACCAACAAACTTT
Found at i:75639262 original size:16 final size:16
Alignment explanation
Indices: 75639243--75639281 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
75639233 AGAGAGCAGG
* *
75639243 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
75639259 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
75639275 GGAAAAA
1 GGAAAAA
75639282 GGGGAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:75640091 original size:16 final size:16
Alignment explanation
Indices: 75640070--75640138 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
75640060 TTTGGTTCGC
75640070 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
75640086 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
75640102 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
75640119 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
75640135 TGTA
1 TGTA
75640139 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:75640116 original size:33 final size:32
Alignment explanation
Indices: 75640070--75640138 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
75640060 TTTGGTTCGC
75640070 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
75640102 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
75640135 TGTA
1 TGTA
75640139 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:75640203 original size:44 final size:45
Alignment explanation
Indices: 75640119--75640209 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
75640109 GGATTAGAGG
* * *
75640119 TGTATTGGATTAGAGGTGTAATAGCTAATCCATTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCATTGTTTGGTTGAA
*
75640164 TGTAATGGAATAGAGGCGTAATAG-TAAT-CTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCAT-TGTTTGGTTGAA
75640208 TG
1 TG
75640210 GAATAGAGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
43 2 0.05
44 18 0.44
45 21 0.51
ACGTcount: A:0.27, C:0.05, G:0.29, T:0.38
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCATTGTTTGGTTGAA
Found at i:75640395 original size:18 final size:19
Alignment explanation
Indices: 75640374--75640410 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
75640364 TTATTATTAA
75640374 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
75640392 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
75640411 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:75640575 original size:120 final size:120
Alignment explanation
Indices: 75640354--75640643 Score: 447
Period size: 120 Copynumber: 2.4 Consensus size: 120
75640344 TTAATCATAT
75640354 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
75640419 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * * *
75640476 TTTGAA-ATAATTAATATTAAATGTATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
75640540 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
75640596 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
75640644 TCATCATACT
Statistics
Matches: 152, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
119 2 0.01
120 108 0.71
121 2 0.01
122 38 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:75644799 original size:38 final size:38
Alignment explanation
Indices: 75644748--75644824 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
75644738 GAATAAAAGT
75644748 AAAACTTTATGGGTAATTTTGTAAAAATGTCAGAAATG
1 AAAACTTTATGGGTAATTTTGTAAAAATGTCAGAAATG
75644786 AAAACTTTATGGGTAATTTTGTAAAAATGTCAGAAATG
1 AAAACTTTATGGGTAATTTTGTAAAAATGTCAGAAATG
75644824 A
1 A
75644825 CCAAATTGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.34
Consensus pattern (38 bp):
AAAACTTTATGGGTAATTTTGTAAAAATGTCAGAAATG
Found at i:75645965 original size:138 final size:138
Alignment explanation
Indices: 75645717--75646085 Score: 513
Period size: 138 Copynumber: 2.6 Consensus size: 138
75645707 GTGTGCTCTC
** * * * * * *
75645717 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
* * **
75645782 TCATGGTTGAAAGATATCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
*
75645847 TGGCAACG
131 TAGCAACG
* *
75645855 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATAAAAAGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
75645920 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
75645985 TAGCAACG
131 TAGCAACG
* * *
75645993 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATGAGT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-TAAA--AA-GAGT
* * *
75646058 AAGACCATAGTTGAAAGAAACTATGGCA
62 AAGACCATGGTTGAAAGATACCATGGCA
75646086 TCATGTCAAA
Statistics
Matches: 205, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
138 172 0.84
139 3 0.01
141 2 0.01
142 28 0.14
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATAAAAAGAGTAAGA
CCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCA
TAGCAACG
Found at i:75646043 original size:46 final size:46
Alignment explanation
Indices: 75645716--75646037 Score: 482
Period size: 46 Copynumber: 7.0 Consensus size: 46
75645706 AGTGTGCTCT
** *
75645716 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
** * *
75645762 CTGATATGAAATGTGTAAGATCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
75645808 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
75645854 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
75645900 GTGACATAAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
75645946 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
75645992 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
75646038 ATGACAGAAA
Statistics
Matches: 256, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 256 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:75646097 original size:92 final size:88
Alignment explanation
Indices: 75645731--75646112 Score: 381
Period size: 92 Copynumber: 4.1 Consensus size: 88
75645721 ATGAAATGTG
* * ** *
75645731 TAAGACCATGGTTGAAAGATACCACGGCAACCTGATATGAAATGTGTAAGATCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
* * * **
75645796 TATCATGGCAACCTGATATGAAATGTG
66 TACCATGGCATCATG-TA--AAA-GAA
*
75645823 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
* *
75645888 TACCATGGCAACGTGACATAAAAAGAA
66 TACCATGGCATCATG---T-AAAAGAA
*
75645915 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
*
75645980 TACCATAGCAACGTGACATG-AAAAGAA
66 TACCATGGC-A--T--CATGTAAAAGAA
* *
75646007 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGAGTAAGACCATAGTTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATG-A--A-TAAGACCATGGTTG
* * *
75646071 AAAGAAACTATGGCATCATGTCAAAGATAAA
61 AAAGATACCATGGCATCATGT-AAA-A-GAA
75646102 TAAGACCATGG
1 TAAGACCATGG
75646113 ATGGGAGACG
Statistics
Matches: 253, Mismatches: 20, Indels: 31
0.83 0.07 0.10
Matches are distributed among these distances:
91 5 0.02
92 193 0.76
93 9 0.04
94 3 0.01
95 16 0.06
96 24 0.09
97 3 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (88 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCATCATGTAAAAGAA
Found at i:75649813 original size:31 final size:29
Alignment explanation
Indices: 75649770--75649839 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 29
75649760 AAAAAAACTT
*
75649770 AAAAGTAA-AATGAATATGAATATCTATCAAC
1 AAAA-TAAGAATGAATATGAATA--TAGCAAC
*
75649801 AAAATAAGAATGAATATGAATATAGCAAT
1 AAAATAAGAATGAATATGAATATAGCAAC
75649830 AAAATAAGAA
1 AAAATAAGAA
75649840 GCAAAAATCG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 15 0.42
30 3 0.08
31 18 0.50
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (29 bp):
AAAATAAGAATGAATATGAATATAGCAAC
Found at i:75652246 original size:5 final size:5
Alignment explanation
Indices: 75652236--75652263 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
75652226 CTGTGTGTTC
75652236 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
75652264 TACAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:75654572 original size:26 final size:26
Alignment explanation
Indices: 75654536--75654619 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
75654526 TGATACAAAT
*
75654536 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
75654562 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
75654588 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
75654614 TGATAA
1 TGATAA
75654620 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:75656651 original size:137 final size:137
Alignment explanation
Indices: 75656405--75656691 Score: 502
Period size: 137 Copynumber: 2.1 Consensus size: 137
75656395 GAGTAGTATC
75656405 CCCAAATGGGCTTGCATATATTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATATTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
75656470 TGTTATCTGAATAAGGGGCTAAGGCCCTGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
75656535 ACCGTTA
131 ACCGTTA
*
75656542 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATATTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
75656607 TGTTATCTGAATAAGGGGCTAATGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
75656672 ACTGTTA
131 ACCGTTA
**
75656679 CCTGAATGGGCTT
1 CCCAAATGGGCTT
75656692 AGGCCCAATA
Statistics
Matches: 142, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 142 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATATTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACCGTTA
Found at i:75660005 original size:14 final size:13
Alignment explanation
Indices: 75659978--75660010 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
75659968 ATAGGGGTAT
75659978 TATTTT-AAATGA
1 TATTTTAAAATGA
75659990 TATTTTAAAGATGA
1 TATTTTAAA-ATGA
75660004 TATTTTA
1 TATTTTA
75660011 TTGAATATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 2 0.11
14 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (13 bp):
TATTTTAAAATGA
Found at i:75674551 original size:39 final size:39
Alignment explanation
Indices: 75674508--75674584 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
75674498 CAATTAATGT
75674508 GTACATACCTATTTTTATATGTTATAATATTGTTTAAGG
1 GTACATACCTATTTTTATATGTTATAATATTGTTTAAGG
*
75674547 GTACATACCTATTTTTATATGTTATGATATTGTTTAAG
1 GTACATACCTATTTTTATATGTTATAATATTGTTTAAG
75674585 AATTATACGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (39 bp):
GTACATACCTATTTTTATATGTTATAATATTGTTTAAGG
Found at i:75681940 original size:13 final size:15
Alignment explanation
Indices: 75681922--75681954 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
75681912 TAAACAATCT
75681922 AAAATGAAAA-A-AA
1 AAAATGAAAAGACAA
75681935 AAAATGAAAAGACAA
1 AAAATGAAAAGACAA
75681950 AAAAT
1 AAAAT
75681955 CATAACTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 1 0.06
15 7 0.39
ACGTcount: A:0.79, C:0.03, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAATGAAAAGACAA
Found at i:75684431 original size:30 final size:31
Alignment explanation
Indices: 75684395--75684463 Score: 104
Period size: 30 Copynumber: 2.2 Consensus size: 31
75684385 AGTTTTAATT
*
75684395 TTCATTTTCATTTTCATTTTTGGAATCCT-A
1 TTCATTTTCATTTTCATTTTTGGAAACCTAA
*
75684425 TTCATTTTCATTTTCTTTTTTGGAAACCTACA
1 TTCATTTTCATTTTCATTTTTGGAAACCTA-A
75684457 TTCATTT
1 TTCATTT
75684464 CCAAATGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 27 0.77
32 8 0.23
ACGTcount: A:0.20, C:0.17, G:0.06, T:0.57
Consensus pattern (31 bp):
TTCATTTTCATTTTCATTTTTGGAAACCTAA
Found at i:75691739 original size:59 final size:59
Alignment explanation
Indices: 75691626--75691761 Score: 161
Period size: 59 Copynumber: 2.3 Consensus size: 59
75691616 TTTAATTCAT
* * * *
75691626 ATAATAATTATATTAAGA-ATGTTATTAAATTTTATTTTATTTTATTAAATTATATTTA
1 ATAATAATTATATTAAAATATGGTATTAAATTTTATTTTATTTTAATAAAATATATTTA
* *
75691684 ATAATAATTATGTTAAAATATGGT-TTAATTATTTATTATT-TTTTAATAAAATATATTTA
1 ATAATAATTATATTAAAATATGGTATTAAAT-TTTATT-TTATTTTAATAAAATATATTTA
* *
75691743 AAAATAATTTTATTAAAAT
1 ATAATAATTATATTAAAAT
75691762 TTAATAACAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
58 21 0.32
59 43 0.65
60 2 0.03
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (59 bp):
ATAATAATTATATTAAAATATGGTATTAAATTTTATTTTATTTTAATAAAATATATTTA
Found at i:75691907 original size:44 final size:46
Alignment explanation
Indices: 75691856--75691948 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
75691846 TACAACATCT
*
75691856 ATTCCATTCAACCAAAC-ATAAGAATT-CT-ATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACAAT-AGAATTACTGATTACAGCTCTATTCC
*
75691900 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
75691946 ATT
1 ATT
75691949 ACAGTGCTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 22 0.50
45 4 0.09
46 18 0.41
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.34
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
Found at i:75693468 original size:25 final size:24
Alignment explanation
Indices: 75693433--75693517 Score: 64
Period size: 25 Copynumber: 3.5 Consensus size: 24
75693423 AGCTCTTTGT
* *
75693433 GAGCTTTCTGATTAATGGCTCTCCG
1 GAGCTTCCTGA-TAATCGCTCTCCG
* **
75693458 GAGCTTCCTGAT-ATCGCTCACTT
1 GAGCTTCCTGATAATCGCTCTCCG
* * *
75693481 GAACTTCCTGATATATTGCTATCCG
1 GAGCTTCCTGATA-ATCGCTCTCCG
*
75693506 GAGCTTCTTGAT
1 GAGCTTCCTGAT
75693518 TAATAGCACT
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
23 18 0.40
24 1 0.02
25 26 0.58
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
GAGCTTCCTGATAATCGCTCTCCG
Found at i:75693633 original size:25 final size:24
Alignment explanation
Indices: 75693577--75693636 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
75693567 TATGGCTTTT
*
75693577 ATGAGCTTTCCGTTATATAGTCCAG
1 ATGAGC-TTCCGTTATATAGTCCAC
*
75693602 ATAAGCTTCACGTTATATA-TCTCAC
1 ATGAGCTTC-CGTTATATAGTC-CAC
75693627 ATGAGCTTCC
1 ATGAGCTTCC
75693637 TATTATATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 6 0.20
25 24 0.80
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (24 bp):
ATGAGCTTCCGTTATATAGTCCAC
Found at i:75698558 original size:35 final size:35
Alignment explanation
Indices: 75698507--75698690 Score: 235
Period size: 35 Copynumber: 5.3 Consensus size: 35
75698497 AGTGCCACGA
* * *
75698507 TTCACAACTCATTATGGTTAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * *
75698542 TTCACAACTCAGTATGGAAAAAACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* *
75698577 TTTATAGCTCAGTATGGATAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * *
75698612 ATCATAACTCAATATGGAAAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
*
75698647 ATT-ATAGCTCAGTATGGATAATACCATACCTACGT
1 -TTCATAACTCAGTATGGATAATACCATACCTACGT
*
75698682 ATCATAACT
1 TTCATAACT
75698691 TTTCCATGGA
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
34 1 0.01
35 125 0.98
36 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (35 bp):
TTCATAACTCAGTATGGATAATACCATACCTACGT
Found at i:75698632 original size:70 final size:70
Alignment explanation
Indices: 75698514--75698690 Score: 291
Period size: 70 Copynumber: 2.5 Consensus size: 70
75698504 CGATTCACAA
* * * * * *
75698514 CTCATTATGGTTAATACCATACCTACGTTTCACAACTCAGTATGGAAAAAACCATACCTACGTTT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAAAACCATACCTACGTAT
75698579 TATAG
66 TATAG
*
75698584 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAATACCATACCTACGTAT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAAAACCATACCTACGTAT
75698649 TATAG
66 TATAG
75698654 CTCAGTATGGATAATACCATACCTACGTATCATAACT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACT
75698691 TTTCCATGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 100 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (70 bp):
CTCAGTATGGATAATACCATACCTACGTATCATAACTCAATATGGAAAAAACCATACCTACGTAT
TATAG
Found at i:75701494 original size:48 final size:48
Alignment explanation
Indices: 75701436--75701704 Score: 466
Period size: 48 Copynumber: 5.6 Consensus size: 48
75701426 ATATACACAC
* *
75701436 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
75701484 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
75701532 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
75701580 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
75701630 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
75701678 ATCTCATATATATTTCACAGTAGCCAT
1 ATCTCATACATATTTCACATTAGCCAT
75701705 ATCTCATATA
Statistics
Matches: 211, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
48 165 0.78
50 46 0.22
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:75701655 original size:98 final size:98
Alignment explanation
Indices: 75701437--75702013 Score: 624
Period size: 98 Copynumber: 5.6 Consensus size: 98
75701427 TATACACACA
* *
75701437 TCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
75701502 ATTAGCCATTCGGCTTTACCAC--ATATACATA
66 ATTAGCCATTCGGCTTTACCACATATATACATT
*
75701533 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
75701598 ATTAGCCATTCGGCTTTACCACATATATACATT
66 ATTAGCCATTCGGCTTTACCACATATATACATT
*
75701631 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
* * * * * *
75701696 AGTAGCCATATC-TCATATATATTTCACAGTAGCCATTCGGCTT
66 ATTAGCCAT-TCGGC-T-T-TA--CCACA-TA--TATAC--ATT
* * ** *
75701739 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATT
1 T--CTC--ATACATATTTC--ACAT-TAGC-CATT-------CGGCTTTACCAC--ATATACATA
*
75701804 TCTCATACATATTTAACATTAGCCATTCGGCTTTACCACATATATACATT
49 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATT
* *
75701854 TCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCATATATATTTCAC
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
* * *
75701919 AGTAGCCATTCTGCTTTACCAC--ATATACATA
66 ATTAGCCATTCGGCTTTACCACATATATACATT
* * *
75701950 TCTCATACTTATTTCACATTAGCCATTCGGCTTTACCATATATATACATTTCTCATACATATTT
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACC--ACATATACATATCTCATACATATTT
75702014 ATCGTGTACA
Statistics
Matches: 407, Mismatches: 41, Indels: 64
0.79 0.08 0.12
Matches are distributed among these distances:
96 127 0.31
98 145 0.36
99 3 0.01
100 12 0.03
101 2 0.00
103 4 0.01
104 2 0.00
106 3 0.01
107 4 0.01
108 5 0.01
109 4 0.01
110 2 0.00
111 10 0.02
112 10 0.02
113 2 0.00
114 4 0.01
115 5 0.01
116 4 0.01
117 3 0.01
119 2 0.00
120 4 0.01
122 2 0.00
123 13 0.03
124 3 0.01
125 32 0.08
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (98 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
ATTAGCCATTCGGCTTTACCACATATATACATT
Found at i:75701705 original size:27 final size:27
Alignment explanation
Indices: 75701675--75701731 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
75701665 ACCACATATA
75701675 CATATCTCATATATATTTCACAGTAGC
1 CATATCTCATATATATTTCACAGTAGC
75701702 CATATCTCATATATATTTCACAGTAGC
1 CATATCTCATATATATTTCACAGTAGC
75701729 CAT
1 CAT
75701732 TCGGCTTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (27 bp):
CATATCTCATATATATTTCACAGTAGC
Found at i:75701718 original size:75 final size:75
Alignment explanation
Indices: 75701631--75701779 Score: 262
Period size: 75 Copynumber: 2.0 Consensus size: 75
75701621 TATATACATT
* *
75701631 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
1 TCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
75701696 AGTAGCCATA
66 AGTAGCCATA
*
75701706 TCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
1 TCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
75701771 ATTAGCCAT
66 AGTAGCCAT
75701780 TCGGCTTTAC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.36
Consensus pattern (75 bp):
TCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
AGTAGCCATA
Found at i:75701823 original size:50 final size:48
Alignment explanation
Indices: 75701702--75702013 Score: 462
Period size: 48 Copynumber: 6.4 Consensus size: 48
75701692 TCACAGTAGC
* *
75701702 CATATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
75701750 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATA
* *
75701800 CATTTCTCATACATATTTAACATTAGCCATTCGGCTTTACCACATATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATA
* *
75701850 CATTTCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
* * *
75701898 CATATCTCATATATATTTCACAGTAGCCATTCTGCTTTACCACATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
* *
75701946 CATATCTCATACTTATTTCACATTAGCCATTCGGCTTTACCATATATATA
1 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC--ACATATA
*
75701996 CATTTCTCATACATATTT
1 CATATCTCATACATATTT
75702014 ATCGTGTACA
Statistics
Matches: 242, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
48 126 0.52
50 116 0.48
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (48 bp):
CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
Found at i:75701825 original size:173 final size:174
Alignment explanation
Indices: 75701529--75701879 Score: 623
Period size: 173 Copynumber: 2.0 Consensus size: 174
75701519 ACCACATATA
* *
75701529 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATT
1 CATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
*
75701594 TCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTC
66 TCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTAACATTAGCCATTC
*
75701659 GGCTTTACCAC-ATATACATATCTCATATATATTTCACAGTAGC
131 GGCTTTACCACAATATACATATCTCATACATATTTCACAGTAGC
*
75701702 CATATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 CATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
75701767 TCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTAACATTAGCCATTC
66 TCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTAACATTAGCCATTC
* *
75701832 GGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGC
131 GGCTTTACCACA-ATATACATATCTCATACATATTTCACAGTAGC
75701877 CAT
1 CAT
75701880 TCGGTTTTAC
Statistics
Matches: 169, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
173 137 0.81
175 32 0.19
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (174 bp):
CATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
TCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTAACATTAGCCATTC
GGCTTTACCACAATATACATATCTCATACATATTTCACAGTAGC
Found at i:75709516 original size:66 final size:66
Alignment explanation
Indices: 75709437--75709566 Score: 224
Period size: 66 Copynumber: 2.0 Consensus size: 66
75709427 TAGGGGACAT
* *
75709437 ACGGCTACAACACATGCCCGTGGCGCAAACCGTGTGTGACACACGGCCTAGACACACGCCCGTGA
1 ACGGCTACAACACATGCCCATGGCGCAAACCGTGTATGACACACGGCCTAGACACACGCCCGTGA
75709502 C
66 C
* *
75709503 ACGGCTACAACACATGCCCATGGCGCAAACCGTGTATGGCACACGGCCTAGACATACGCCCGTG
1 ACGGCTACAACACATGCCCATGGCGCAAACCGTGTATGACACACGGCCTAGACACACGCCCGTG
75709567 TGTCTACCTG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.26, C:0.35, G:0.25, T:0.13
Consensus pattern (66 bp):
ACGGCTACAACACATGCCCATGGCGCAAACCGTGTATGACACACGGCCTAGACACACGCCCGTGA
C
Found at i:75710277 original size:35 final size:35
Alignment explanation
Indices: 75710226--75710362 Score: 157
Period size: 35 Copynumber: 3.9 Consensus size: 35
75710216 AGTGCCACGG
* **
75710226 TTCACAACTCAATATGGTTAATACCATACCTATGT
1 TTCACAACTCAGTATGGAAAATACCATACCTATGT
*
75710261 TTCACAACTCAGTATGGAAAATACCATACCTACGT
1 TTCACAACTCAGTATGGAAAATACCATACCTATGT
* * * * * *
75710296 TTTATAGCTCAGTATGGATAATACTATACCAATGT
1 TTCACAACTCAGTATGGAAAATACCATACCTATGT
* * *
75710331 ATCATAACTCAGTATGGAAAATACCTTACCTA
1 TTCACAACTCAGTATGGAAAATACCATACCTA
75710363 CGTATTGTTA
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 84 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31
Consensus pattern (35 bp):
TTCACAACTCAGTATGGAAAATACCATACCTATGT
Found at i:75710351 original size:70 final size:70
Alignment explanation
Indices: 75710232--75710381 Score: 205
Period size: 70 Copynumber: 2.1 Consensus size: 70
75710222 ACGGTTCACA
* * * *
75710232 ACTCAATATGGTTAATACCATACCTATGTTTCACAACTCAGTATGGAAAATACCATACCTACGT-
1 ACTCAGTATGGATAATACCATACCAATGTATCACAACTCAGTATGGAAAATACCATACCTACGTA
75710296 TT-TAT
66 TTGT-T
* * *
75710301 AGCTCAGTATGGATAATACTATACCAATGTATCATAACTCAGTATGGAAAATACCTTACCTACGT
1 A-CTCAGTATGGATAATACCATACCAATGTATCACAACTCAGTATGGAAAATACCATACCTACGT
75710366 ATTGTT
65 ATTGTT
75710372 ACTCAGTATG
1 ACTCAGTATG
75710382 TGTAGCACCC
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
69 1 0.01
70 65 0.92
71 4 0.06
72 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (70 bp):
ACTCAGTATGGATAATACCATACCAATGTATCACAACTCAGTATGGAAAATACCATACCTACGTA
TTGTT
Found at i:75710376 original size:35 final size:34
Alignment explanation
Indices: 75710267--75710381 Score: 117
Period size: 35 Copynumber: 3.3 Consensus size: 34
75710257 ATGTTTCACA
*
75710267 ACTCAGTATGGAAAATACCATACCTACGT-TTTAT
1 ACTCAGTATGGAAAATACCTTACCTACGTATTT-T
* * * * *
75710301 AGCTCAGTATGGATAATA-CTATACCAATGTATCATA
1 A-CTCAGTATGGAAAATACCT-TACCTACGTAT-TTT
75710337 ACTCAGTATGGAAAATACCTTACCTACGTATTGTT
1 ACTCAGTATGGAAAATACCTTACCTACGTATT-TT
75710372 ACTCAGTATG
1 ACTCAGTATG
75710382 TGTAGCACCC
Statistics
Matches: 64, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
34 2 0.03
35 57 0.89
36 4 0.06
37 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (34 bp):
ACTCAGTATGGAAAATACCTTACCTACGTATTTT
Found at i:75710647 original size:21 final size:21
Alignment explanation
Indices: 75710622--75710670 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
75710612 GGGCATACGC
*
75710622 CCGTGTGGATGGGCAACATGT
1 CCGTGTGGATGGGCAACACGT
75710643 CCGTGTGGATGGGCAACACGT
1 CCGTGTGGATGGGCAACACGT
75710664 CCGTGTG
1 CCGTGTG
75710671 AATTTATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.16, C:0.22, G:0.39, T:0.22
Consensus pattern (21 bp):
CCGTGTGGATGGGCAACACGT
Found at i:75711897 original size:47 final size:48
Alignment explanation
Indices: 75711788--75711909 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 48
75711778 GTAATTTATC
* * *
75711788 GATGCCATGTCCCAGACATGGTCCTACACTGGCTCACATATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGAT
* * *
75711836 GATGCCATGTCCCAGACATGGTCTTCCATTAGCT-ACATGTCGAGGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGAT
75711883 GATGCCATGTCCCAGACATGGTCTTAC
1 GATGCCATGTCCCAGACATGGTCTTAC
75711910 TATAACACCC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 37 0.55
48 30 0.45
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGAT
Found at i:75729911 original size:27 final size:28
Alignment explanation
Indices: 75729881--75729937 Score: 64
Period size: 29 Copynumber: 2.0 Consensus size: 28
75729871 ATTTTTGATG
75729881 AAATAAGCTATTTG-GG-CTAATTTGTGA
1 AAATAAGCT-TTTGAGGACTAATTTGTGA
* *
75729908 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATAAGCTTTTG-AGGACTAATTTGTGA
75729937 A
1 A
75729938 TTTAACATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 7 0.28
28 2 0.08
29 12 0.48
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (28 bp):
AAATAAGCTTTTGAGGACTAATTTGTGA
Found at i:75730938 original size:12 final size:13
Alignment explanation
Indices: 75730921--75730952 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75730911 GCAAATGTTA
75730921 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
75730933 AGTTTTGATGCAT
1 AGTTTTGATGCAT
75730946 -GTTTTGA
1 AGTTTTGA
75730953 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:75732583 original size:40 final size:40
Alignment explanation
Indices: 75732539--75732763 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
75732529 GCTCCTCGTT
* * *
75732539 CAAATGCCTTCGGGGCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75732579 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75732619 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
75732659 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75732698 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75732739 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75732764 CATCATTCAA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75732723 original size:119 final size:120
Alignment explanation
Indices: 75732541--75732763 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
75732531 TCCTCGTTCA
*
75732541 AATGCCTTCGGGGCATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGGCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
75732606 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
75732661 AATGCCTTC-GGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGGCATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
75732723 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
75732764 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 69 0.77
120 17 0.19
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGGCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:75739795 original size:25 final size:26
Alignment explanation
Indices: 75739775--75739826 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
75739765 ATGATATTGT
*
75739775 ATGTG-AAC-TGAAAATGGGATAATG
1 ATGTGAAACATGAAAATGAGATAATG
*
75739799 ATTTGAAACATGAAAATGAGATACATG
1 ATGTGAAACATGAAAATGAGATA-ATG
75739826 A
1 A
75739827 GTTATGTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 3 0.13
26 12 0.52
27 4 0.17
ACGTcount: A:0.46, C:0.06, G:0.23, T:0.25
Consensus pattern (26 bp):
ATGTGAAACATGAAAATGAGATAATG
Found at i:75741475 original size:16 final size:18
Alignment explanation
Indices: 75741454--75741490 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
75741444 TTCTATATGG
75741454 ATTTTACC-TT-TATTTT
1 ATTTTACCATTGTATTTT
75741470 ATTTTACCATTGTATTTT
1 ATTTTACCATTGTATTTT
75741488 ATT
1 ATT
75741491 AAAATAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.22, C:0.11, G:0.03, T:0.65
Consensus pattern (18 bp):
ATTTTACCATTGTATTTT
Found at i:75749208 original size:21 final size:22
Alignment explanation
Indices: 75749157--75749208 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
75749147 AATAAAGTCT
*
75749157 ATGTA-CAAATATCATCATCTC
1 ATGTATCATATATCATCATCTC
* *
75749178 ATGTTTTCATATATCAT-ATGTC
1 ATG-TATCATATATCATCATCTC
75749200 ATGTATCAT
1 ATGTATCAT
75749209 CATTTACTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 8 0.32
22 8 0.32
23 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (22 bp):
ATGTATCATATATCATCATCTC
Found at i:75756073 original size:21 final size:20
Alignment explanation
Indices: 75756045--75756083 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
75756035 CAAAACTTGT
75756045 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
75756065 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
75756084 AAAAACACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:75758588 original size:29 final size:29
Alignment explanation
Indices: 75758544--75758605 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
75758534 AAGTCATTCC
* * *
75758544 ATTTTTATTTTCATCACTCAATTATATAA
1 ATTTTTAATTTAATCACTAAATTATATAA
* *
75758573 ATTTTTAATTTAATCATTAAATTATTTAA
1 ATTTTTAATTTAATCACTAAATTATATAA
75758602 ATTT
1 ATTT
75758606 AATTTTTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTTAATTTAATCACTAAATTATATAA
Found at i:75760489 original size:18 final size:18
Alignment explanation
Indices: 75760462--75760496 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
75760452 TTCATGAGGT
*
75760462 TGTGGTTGTGGTTGTGAC
1 TGTGGCTGTGGTTGTGAC
75760480 TGTGGCTGTGGTTGTGA
1 TGTGGCTGTGGTTGTGA
75760497 GGTTCTCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.46, T:0.43
Consensus pattern (18 bp):
TGTGGCTGTGGTTGTGAC
Found at i:75764515 original size:16 final size:18
Alignment explanation
Indices: 75764493--75764526 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75764483 AGAGAATAAT
*
75764493 AAAA-AGAAAAAAAAGAG
1 AAAAGAGAAAATAAAGAG
75764510 AAAAGAGAAAATAAAGA
1 AAAAGAGAAAATAAAGA
75764527 AGCAGAGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (18 bp):
AAAAGAGAAAATAAAGAG
Found at i:75765466 original size:14 final size:14
Alignment explanation
Indices: 75765444--75765476 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
75765434 TTATAAATTC
75765444 TTTTTATTTTT-AT
1 TTTTTATTTTTAAT
75765457 TTTTTAATTTTTAAT
1 TTTTT-ATTTTTAAT
75765472 TTTTT
1 TTTTT
75765477 TTATATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 6 0.33
15 7 0.39
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTATTTTTAAT
Found at i:75765880 original size:18 final size:18
Alignment explanation
Indices: 75765859--75765903 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
75765849 ACTTTTTGAA
*
75765859 TTTTAAAAAGTTTTTATT
1 TTTTAAAAACTTTTTATT
* *
75765877 TTTTCATAATCTTTTTATT
1 TTTT-AAAAACTTTTTATT
75765896 TTTTAAAA
1 TTTTAAAA
75765904 CATAAATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTTAAAAACTTTTTATT
Found at i:75766690 original size:29 final size:30
Alignment explanation
Indices: 75766658--75766714 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
75766648 TCTCACAAAC
75766658 ATTTCTTCC-AAAATTT-TCAAAACTCTCAA
1 ATTTC-TCCTAAAATTTCTCAAAACTCTCAA
* *
75766687 ATTTCTCCTTAAATTTCTCAAAGCTCTC
1 ATTTCTCCTAAAATTTCTCAAAACTCTC
75766715 TTTAATTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 3 0.12
29 11 0.46
30 10 0.42
ACGTcount: A:0.32, C:0.26, G:0.02, T:0.40
Consensus pattern (30 bp):
ATTTCTCCTAAAATTTCTCAAAACTCTCAA
Found at i:75769403 original size:37 final size:37
Alignment explanation
Indices: 75769353--75769431 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75769343 TTATTACGAA
* * *
75769353 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
75769390 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
75769427 GTCTT
1 GTCTT
75769432 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:75769628 original size:47 final size:47
Alignment explanation
Indices: 75769550--75769821 Score: 411
Period size: 47 Copynumber: 5.8 Consensus size: 47
75769540 CCCTTCGGGA
* * * * * *
75769550 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75769597 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75769644 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75769693 CTTATCACGTATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75769739 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75769786 CTTATCACATATATATACTTTCACATTCATCACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
75769822 ACATATATAT
Statistics
Matches: 207, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
46 45 0.22
47 117 0.57
49 45 0.22
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75769811 original size:16 final size:16
Alignment explanation
Indices: 75769790--75769841 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
75769780 TTAGGCCTTA
75769790 TCACATATATATACTT
1 TCACATATATATACTT
* *
75769806 TCACAT-TCAT-CAC-A
1 TCACATAT-ATATACTT
75769820 TCACATATATATACTT
1 TCACATATATATACTT
75769836 TCACAT
1 TCACAT
75769842 TCATCACATC
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 8 0.29
15 6 0.21
16 14 0.50
ACGTcount: A:0.37, C:0.25, G:0.00, T:0.38
Consensus pattern (16 bp):
TCACATATATATACTT
Found at i:75769824 original size:30 final size:30
Alignment explanation
Indices: 75769789--75769851 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
75769779 ATTAGGCCTT
75769789 ATCACATATATATACTTTCACATTCATCAC
1 ATCACATATATATACTTTCACATTCATCAC
75769819 ATCACATATATATACTTTCACATTCATCAC
1 ATCACATATATATACTTTCACATTCATCAC
75769849 ATC
1 ATC
75769852 GGCCATTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (30 bp):
ATCACATATATATACTTTCACATTCATCAC
Found at i:75769828 original size:77 final size:77
Alignment explanation
Indices: 75769742--75769898 Score: 296
Period size: 77 Copynumber: 2.0 Consensus size: 77
75769732 ATTAGGCCTT
*
75769742 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
75769807 CACATTCATCAC
66 CACATTCATCAC
*
75769819 ATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
75769884 CACATTCATCAC
66 CACATTCATCAC
75769896 ATC
1 ATC
75769899 GGCCATTAGG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (77 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTCATCAC
Found at i:75769841 original size:124 final size:123
Alignment explanation
Indices: 75769696--75769946 Score: 450
Period size: 124 Copynumber: 2.0 Consensus size: 123
75769686 ATTAGGCCTT
*
75769696 ATCACGTATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 ATCACATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
75769761 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT-ACTTTCACATTCATCAC
66 ACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAACTTTCACATTCATCAC
*
75769819 ATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
75769884 CACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCAC
65 CACATTCATCACATCGGCCATTAGGCCTATCACATATATATA-ACTTTCACATTCATCAC
75769944 ATC
1 ATC
75769947 GGCCATTAGG
Statistics
Matches: 123, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
123 27 0.22
124 76 0.62
125 20 0.16
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (123 bp):
ATCACATATATACACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTATCACATATATATAACTTTCACATTCATCAC
Found at i:75769983 original size:49 final size:49
Alignment explanation
Indices: 75769819--75770106 Score: 509
Period size: 49 Copynumber: 6.0 Consensus size: 49
75769809 CATTCATCAC
75769819 ATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
75769866 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-T
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
75769912 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
75769961 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
75770010 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
75770059 ATCAC--ATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
75770106 A
1 A
75770107 CTATCATTTC
Statistics
Matches: 233, Mismatches: 3, Indels: 10
0.95 0.01 0.04
Matches are distributed among these distances:
45 6 0.03
46 6 0.03
47 79 0.34
48 40 0.17
49 102 0.44
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:75770021 original size:219 final size:218
Alignment explanation
Indices: 75769601--75770044 Score: 759
Period size: 219 Copynumber: 2.0 Consensus size: 218
75769591 CTCGGCCCTG
75769601 TCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTT
1 TCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTT
*
75769666 TCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTCACATTCATCACATCGGC
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCACATTCATCACATCGGC
*
75769731 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-A
130 CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAA
75769795 TATATATACTTTCACATTCATCACA
195 TATATA-ACTTTCACATTCATCACA
*
75769820 TCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTT
1 TCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTT
75769884 CACATTCATCACATCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCATCACATCG
66 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC-TTCACATTCATCACATCG
75769948 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATC
128 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATC
75770013 ACATATATATACACTTTCACATTCATCACA
191 ACA-ATATATA-ACTTTCACATTCATCACA
75770043 TC
1 TC
75770045 GGCCATTAGG
Statistics
Matches: 214, Mismatches: 4, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
216 6 0.03
217 40 0.19
218 9 0.04
219 86 0.40
221 46 0.21
223 27 0.13
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.32
Consensus pattern (218 bp):
TCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAAT
ATATAACTTTCACATTCATCACA
Found at i:75773468 original size:40 final size:40
Alignment explanation
Indices: 75773423--75773579 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
75773413 CGAATACACG
* * *
75773423 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
75773463 ACACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
75773503 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
75773543 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
75773580 TTAGTAACTC
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:75773604 original size:40 final size:40
Alignment explanation
Indices: 75773436--75773697 Score: 225
Period size: 40 Copynumber: 6.6 Consensus size: 40
75773426 CCAGCATGAT
* *
75773436 TGCTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATA-ACTAGCACGAA
* * * *
75773476 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACGAA
* * * *
75773516 TGCTCTTCGGGACTTAGCCCAGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACGAA
* * *
75773556 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACGAA
* * *
75773597 TGC-CTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATA-TA-TAACTAGCACGAA
* * *
75773636 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATAAC-TAGCACGAA
*
75773676 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
75773698 CATCATTCGA
Statistics
Matches: 188, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.17
40 133 0.71
41 21 0.11
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACGAA
Found at i:75774042 original size:29 final size:29
Alignment explanation
Indices: 75774003--75774081 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
75773993 CTTAATAATC
* *
75774003 AACCACGCACACTTAGTGCCATGTATTTTA
1 AACC-CGCACACTTAGTGCCATGCATTTCA
*
75774033 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75774062 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75774082 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 41 0.93
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75774121 original size:43 final size:43
Alignment explanation
Indices: 75774063--75774165 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
75774053 TGCATTTCAA
*
75774063 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
*
75774106 TCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
75774149 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
75774166 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:75775956 original size:37 final size:37
Alignment explanation
Indices: 75775906--75775984 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75775896 TTATTACGAA
* * *
75775906 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
75775943 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
75775980 GTCTT
1 GTCTT
75775985 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:75776230 original size:49 final size:49
Alignment explanation
Indices: 75776105--75776679 Score: 886
Period size: 49 Copynumber: 12.0 Consensus size: 49
75776095 CTTCGGGACT
* * * * *
75776105 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776152 TGTCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776199 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
75776248 TATCAC--GTATATACACTTTCACATTCATCACATCAGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776295 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
75776342 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776389 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776438 TATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
75776487 TATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGACCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776536 TATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
75776585 TATCACATATATATACACTTTCAGATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
75776634 TATCAC--ATATATACACTTTCACGTTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
75776680 TTACTATCAT
Statistics
Matches: 497, Mismatches: 25, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 222 0.45
48 1 0.00
49 274 0.55
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:75780523 original size:48 final size:46
Alignment explanation
Indices: 75780420--75780536 Score: 128
Period size: 46 Copynumber: 2.5 Consensus size: 46
75780410 TATGAGAGCC
* * * * *
75780420 AGTGTAAGACAT-TTCGGGGACATGCATCGGCTTTGAGACAAGAGCT
1 AGTGTAAGACATGTT-TGGGACATACATCAGCCTTGAGACAAAAGCT
*
75780466 AGTGTAAGACATGTTTGGGACATACATCAGCCTTGAGATATACAAGCT
1 AGTGTAAGACATGTTTGGGACATACATCAGCCTTGAGACA-A-AAGCT
* *
75780514 AGTGTAAGACCTGTCTGGGACAT
1 AGTGTAAGACATGTTTGGGACAT
75780537 GGCATCGACA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 32 0.53
47 3 0.05
48 25 0.42
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATACATCAGCCTTGAGACAAAAGCT
Found at i:75780584 original size:97 final size:97
Alignment explanation
Indices: 75780459--75780645 Score: 225
Period size: 97 Copynumber: 1.9 Consensus size: 97
75780449 GCTTTGAGAC
* * * * *
75780459 AAGAGCTAGTGTAAGACATGTTTGGGACAT-ACATCAGCCTTGAGATATACAAGCTAGTGTAAGA
1 AAGAGCCAGTGCAAGACATGTCTGGGACATGACATC-GACTT-AGATATACAAGCCAGTGTAAGA
75780523 CC-TGTCTGGGACATGGCATCGACATCAATAGAT
64 CCATGTCTGGGACATGGCATCGACATCAATAGAT
* * * * * *
75780556 AAGAGCCAGTGCAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACC
1 AAGAGCCAGTGCAAGACATGTCTGGGACATGACATCGACTTAGATATACAAGCCAGTGTAAGACC
* *
75780621 ATGTTTGGGACATGGCGTCGACATC
66 ATGTCTGGGACATGGCATCGACATC
75780646 TTATCCCATG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
96 19 0.25
97 52 0.69
98 4 0.05
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (97 bp):
AAGAGCCAGTGCAAGACATGTCTGGGACATGACATCGACTTAGATATACAAGCCAGTGTAAGACC
ATGTCTGGGACATGGCATCGACATCAATAGAT
Found at i:75783063 original size:22 final size:22
Alignment explanation
Indices: 75783038--75783081 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75783028 GAAAACGATC
*
75783038 AAAATTAATAAAAATTTATTAT
1 AAAATTAATAAAAATTCATTAT
* *
75783060 AAAATTATTTAAAATTCATTAT
1 AAAATTAATAAAAATTCATTAT
75783082 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATAAAAATTCATTAT
Found at i:75784343 original size:24 final size:23
Alignment explanation
Indices: 75784266--75784412 Score: 100
Period size: 24 Copynumber: 6.3 Consensus size: 23
75784256 TATGGATATA
* *
75784266 TCAGCTCGAAAGAGCTTACTATTT
1 TCAGCTCGTAAGAGCTTACT-GTT
** ** * *
75784290 TCAGCTTATTGGAGCTTACCGAT
1 TCAGCTCGTAAGAGCTTACTGTT
75784313 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTG-TT
* * **
75784337 TCAGCTCATTAGAGCTTTA-TCAAT
1 TCAGCTCGTAAGAGC-TTACT-GTT
*
75784361 TCAGCTCGTAAAAGCTTACTGTT
1 TCAGCTCGTAAGAGCTTACTGTT
* **
75784384 T-AGCTCGAAAGAGCTTACCATT
1 TCAGCTCGTAAGAGCTTACTGTT
75784406 TCAGCTC
1 TCAGCTC
75784413 AATAGGGCCT
Statistics
Matches: 91, Mismatches: 27, Indels: 11
0.71 0.21 0.09
Matches are distributed among these distances:
22 18 0.20
23 27 0.30
24 43 0.47
25 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (23 bp):
TCAGCTCGTAAGAGCTTACTGTT
Found at i:75784379 original size:48 final size:47
Alignment explanation
Indices: 75784266--75784412 Score: 167
Period size: 47 Copynumber: 3.1 Consensus size: 47
75784256 TATGGATATA
* * * *
75784266 TCAGCTCG-AAAGAGCTTACTATTTTCAGCTTATTGGAGCTTACCGAT
1 TCAGCTCGTAAA-AGCTTACTGTTTTCAGCTCATTAGAGCTTACCAAT
* *
75784313 TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTTTATCAAT
1 TCAGCTCGTAAAAGCTTACTGTTTTCAGCTCATTAGAGC-TTACCAAT
* *
75784361 TCAGCTCGTAAAAGCTTACTG-TTT-AGCTCGA-AAGAGCTTACCATT
1 TCAGCTCGTAAAAGCTTACTGTTTTCAGCTC-ATTAGAGCTTACCAAT
75784406 TCAGCTC
1 TCAGCTC
75784413 AATAGGGCCT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
45 13 0.15
46 10 0.11
47 36 0.41
48 28 0.32
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (47 bp):
TCAGCTCGTAAAAGCTTACTGTTTTCAGCTCATTAGAGCTTACCAAT
Found at i:75784620 original size:20 final size:20
Alignment explanation
Indices: 75784595--75784655 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
75784585 GAATAAGCTA
75784595 TGTTGAAAT-AGATGAATTAC
1 TGTTGAAATGA-ATGAATTAC
75784615 TGTTGAAATGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
* * *
75784635 TATTGATACGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
75784655 T
1 T
75784656 ATTATTATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 36 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (20 bp):
TGTTGAAATGAATGAATTAC
Found at i:75784701 original size:20 final size:20
Alignment explanation
Indices: 75784606--75784702 Score: 65
Period size: 20 Copynumber: 4.8 Consensus size: 20
75784596 GTTGAAATAG
* * *
75784606 ATGAATTACTGTTGAAATGA
1 ATGAATTACAGTTTATATGA
* *
75784626 ATGAATTACTA-TTGATACGA
1 ATGAATTAC-AGTTTATATGA
*
75784646 ATGAATTACTATTATTAT-TG-
1 ATGAATTAC-AGT-TTATATGA
* * *
75784666 ATGAACTACTGGTTATATGA
1 ATGAATTACAGTTTATATGA
75784686 ATGAATTACAGTTTATA
1 ATGAATTACAGTTTATA
75784703 CAAATAAAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
18 4 0.07
19 2 0.03
20 49 0.82
21 2 0.03
22 3 0.05
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGAATTACAGTTTATATGA
Found at i:75791449 original size:47 final size:47
Alignment explanation
Indices: 75791391--75791623 Score: 242
Period size: 47 Copynumber: 5.0 Consensus size: 47
75791381 TCGATATATA
* *
75791391 AGCTCAAAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCAATTT
1 AGCTCATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGATTT
* * *
75791438 AGCTCGTAAGAGCTTACTGTTTTTAGCTCATTGGAGCTTACCGATTC
1 AGCTCATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGATTT
* * * *
75791485 AGCTCATAAGAGCTTACTATTTTTAGCTTATTGGAGCTTACTGATTT
1 AGCTCATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGATTT
* * * *
75791532 CGCTCATATGAGCTTATTG-TTT-AGCTCGA-TAGAGCTTACC-ATTT
1 AGCTCATAAGAGCTTACTGTTTTCAGCTC-ATTGGAGCTTACCGATTT
* **
75791576 CAGCTCAATAA-AGCTTACTGTTTATCAGCTTAGGAGGAGCTTACCGAT
1 -AGCTC-ATAAGAGCTTACTGTTT-TCAGCTCA-TTGGAGCTTACCGAT
75791624 CATGGCTCAA
Statistics
Matches: 154, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
44 4 0.03
45 25 0.16
46 9 0.06
47 101 0.66
48 4 0.03
49 9 0.06
50 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (47 bp):
AGCTCATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGATTT
Found at i:75791566 original size:22 final size:23
Alignment explanation
Indices: 75791391--75791599 Score: 121
Period size: 23 Copynumber: 9.0 Consensus size: 23
75791381 TCGATATATA
* * *
75791391 AGCTCAAAAGAGCTTACTGTTTT
1 AGCTCATATGAGCTTACTGATTT
**
75791414 CAGCTCAT-TGGAGCTTACCAATTT
1 -AGCTCATAT-GAGCTTACTGATTT
* * *
75791438 AGCTCGTAAGAGCTTACTGTTTTT
1 AGCTCATATGAGCTTACTG-ATTT
* *
75791462 AGCTCAT-TGGAGCTTACCGATTC
1 AGCTCATAT-GAGCTTACTGATTT
*
75791485 AGCTCATAAGAGCTTACT-ATTTTT
1 AGCTCATATGAGCTTACTGA--TTT
*
75791509 AGCTTAT-TGGAGCTTACTGATTT
1 AGCTCATAT-GAGCTTACTGATTT
* *
75791532 CGCTCATATGAGCTTATTG-TTT
1 AGCTCATATGAGCTTACTGATTT
*
75791554 AGCTCGATA-GAGCTTAC-CATTT
1 AGCTC-ATATGAGCTTACTGATTT
*
75791576 CAGCTCA-ATAAAGCTTACTG-TTT
1 -AGCTCATAT-GAGCTTACTGATTT
75791599 A
1 A
75791600 TCAGCTTAGG
Statistics
Matches: 141, Mismatches: 28, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
21 1 0.01
22 20 0.14
23 66 0.47
24 53 0.38
25 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (23 bp):
AGCTCATATGAGCTTACTGATTT
Found at i:75791808 original size:20 final size:20
Alignment explanation
Indices: 75791766--75791808 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
75791756 TAAGCTATGC
* *
75791766 TGAAATGGATGAATTAATGT
1 TGAAATGAATGAATTAATAT
*
75791786 TGAAATGAATGAATTACTAT
1 TGAAATGAATGAATTAATAT
75791806 TGA
1 TGA
75791809 TACAGATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.35
Consensus pattern (20 bp):
TGAAATGAATGAATTAATAT
Found at i:75798852 original size:13 final size:13
Alignment explanation
Indices: 75798834--75798860 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75798824 GGGGTTGTTT
75798834 ATTAAACTAATTA
1 ATTAAACTAATTA
75798847 ATTAAACTAATTA
1 ATTAAACTAATTA
75798860 A
1 A
75798861 CTGATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:75802318 original size:23 final size:21
Alignment explanation
Indices: 75802270--75802318 Score: 55
Period size: 23 Copynumber: 2.3 Consensus size: 21
75802260 CCAATACTTG
*
75802270 CAAAC-ATATACCAACCAATT
1 CAAACAATATACCAACCAACT
75802290 CAAACAATATAACCAAGCCAACT
1 CAAACAATAT-ACCAA-CCAACT
*
75802313 CTAACA
1 CAAACA
75802319 TCTAACTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.21
21 4 0.17
22 5 0.21
23 10 0.42
ACGTcount: A:0.51, C:0.31, G:0.02, T:0.16
Consensus pattern (21 bp):
CAAACAATATACCAACCAACT
Found at i:75805892 original size:15 final size:16
Alignment explanation
Indices: 75805872--75805901 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75805862 ATAACCTTGA
75805872 TAAACCTCAT-TCATG
1 TAAACCTCATATCATG
75805887 TAAACCTCATATCAT
1 TAAACCTCATATCAT
75805902 CGATTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.33
Consensus pattern (16 bp):
TAAACCTCATATCATG
Done.