Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 239 of 318
Found at i:75824414 original size:114 final size:113
Alignment explanation
Indices: 75824220--75824436 Score: 335
Period size: 114 Copynumber: 1.9 Consensus size: 113
75824210 ACGAAAATAG
* * *
75824220 AAAAAGCGCCCACCGTGGGGCTCAAACCCACAACCACAAGGTTAAGAGCCTTGCGCTCTACCAAC
1 AAAAAGCGCCCACCATGGGGCTCAAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCAAC
* **
75824285 TGAGCTAGACGGGCTACTACGTTATTTTGCCTTCCTTATTAGAAAATT
66 TGAGCTAGACAGGCTACTACGCAATTTTGCCTTCCTTATTAGAAAATT
*
75824333 AAAAATGCGCCCACCATGGGGCTCAAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCGA
1 AAAAA-GCGCCCACCATGGGGCTCAAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCAA
* * *
75824398 TTGAGCTAGACAGGCTACTATGCAATTTTGCCTTGCTTA
65 CTGAGCTAGACAGGCTACTACGCAATTTTGCCTTCCTTA
75824437 GATTATAAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
113 5 0.05
114 88 0.95
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (113 bp):
AAAAAGCGCCCACCATGGGGCTCAAACCCACAACCACAAGGTTAAGAGCCTTACACTCTACCAAC
TGAGCTAGACAGGCTACTACGCAATTTTGCCTTCCTTATTAGAAAATT
Found at i:75824619 original size:141 final size:141
Alignment explanation
Indices: 75824366--75824619 Score: 341
Period size: 141 Copynumber: 1.8 Consensus size: 141
75824356 CAAACCCACA
* * * * **
75824366 ACCACAAGGTTAAGAGCCTTACACTCTACCGATTGAGCTAGACAGGCTACTATGCAATTTTGCCT
1 ACCACAAGGGTAAGAGCCTTACACTATACCGACTAAGCTAGACAGGCTACTATGCAATTTCACCT
* * *
75824431 TGCTTAGATTATAAATACATAAAATTATTAGAATATAAAATAGAAAATTCGCCCCCCTTGGAGTT
66 TGCTTACATTATAAATACATAAAATTATTACAAGATAAAATAGAAAATTCGCCCCCCTTGGAGTT
75824496 CGAACCCCAAG
131 CGAACCCCAAG
* * **
75824507 ACCACAAGGGTAAGAGCCTTGCGCTATACCGACTAAGCTAGAC-GAGCTACTATGCTGTTTCACC
1 ACCACAAGGGTAAGAGCCTTACACTATACCGACTAAGCTAGACAG-GCTACTATGCAATTTCACC
* *
75824571 TTGCTTACATTTATAAATACGTAAACTTATTACAAGATAAAATA-AAAAT
65 TTGCTTACA-TTATAAATACATAAAATTATTACAAGATAAAATAGAAAAT
75824620 GCTCGCACCC
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
140 1 0.01
141 65 0.68
142 30 0.31
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (141 bp):
ACCACAAGGGTAAGAGCCTTACACTATACCGACTAAGCTAGACAGGCTACTATGCAATTTCACCT
TGCTTACATTATAAATACATAAAATTATTACAAGATAAAATAGAAAATTCGCCCCCCTTGGAGTT
CGAACCCCAAG
Found at i:75827264 original size:13 final size:13
Alignment explanation
Indices: 75827240--75827271 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75827230 ATAACACATT
75827240 TCAAAA-TATGCA
1 TCAAAACTATGCA
75827252 TCAAAACTATGCA
1 TCAAAACTATGCA
75827265 -CAAAACT
1 TCAAAACT
75827272 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:75834371 original size:12 final size:13
Alignment explanation
Indices: 75834356--75834387 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75834346 ATAACACATT
75834356 TCAAAAC-ATGCA
1 TCAAAACTATGCA
75834368 TCAAAACTATGCA
1 TCAAAACTATGCA
75834381 -CAAAACT
1 TCAAAACT
75834388 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:75834983 original size:44 final size:43
Alignment explanation
Indices: 75834847--75835005 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 43
75834837 AAATACCGAC
* * * * *
75834847 GTCCCAAACGTGGTCTTACATGT-AATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCTGT
* * * *
75834890 GTCCCAGACAGGGTCTTATACG-AAA-ACAGATACGATGCC-GAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-T
75834932 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCTGT
**
75834976 GTCCCAGACACAGTCTTACACG-ATAATTCA
1 GTCCCAGACATGGTCTTACACGTA-AATTCA
75835006 GGTCAATACC
Statistics
Matches: 94, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 27 0.29
44 30 0.32
45 5 0.05
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGT
Found at i:75834992 original size:86 final size:85
Alignment explanation
Indices: 75834842--75834998 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
75834832 AAGTAAAATA
* * * **
75834842 CCGACGTCCCAAACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAGACAGGGTCTT
1 CCGACGTCCCAAACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAGACACAGTCTT
*
75834907 ATACGAAAACAGATACGATG
66 ACACGAAAACAGATACGATG
* * *
75834927 CCGATGTCCCAGACATGGTCTTACACGTAAATTTCA-AATCGATGCCTGTGTCCCAGACACAGTC
1 CCGACGTCCCAAACATGGTCTTACACGT-AA-TTCAGAATCGATGCCTCTGTCCCAGACACAGTC
75834991 TTACACGA
64 TTACACGA
75834999 TAATTCAGGT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 24 0.39
86 33 0.54
87 4 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (85 bp):
CCGACGTCCCAAACATGGTCTTACACGTAATTCAGAATCGATGCCTCTGTCCCAGACACAGTCTT
ACACGAAAACAGATACGATG
Found at i:75836765 original size:22 final size:22
Alignment explanation
Indices: 75836737--75836854 Score: 110
Period size: 22 Copynumber: 5.4 Consensus size: 22
75836727 GCACTAAGTT
* *
75836737 AACAGGACGGCTTAACGTTGTA
1 AACAGGACGGCTCAACGTCGTA
*
75836759 AACAGGACGGCTCAACGTCGTG
1 AACAGGACGGCTCAACGTCGTA
* **
75836781 GACAGGACGGCTCAACACCGTA
1 AACAGGACGGCTCAACGTCGTA
* * * * *
75836803 GATAGGATGACTTAACGTCGTA
1 AACAGGACGGCTCAACGTCGTA
* *
75836825 GACAGGACGACTCAACGTCGTA
1 AACAGGACGGCTCAACGTCGTA
*
75836847 GACAGGAC
1 AACAGGAC
75836855 AACTAAAGGC
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 80 1.00
ACGTcount: A:0.31, C:0.24, G:0.29, T:0.16
Consensus pattern (22 bp):
AACAGGACGGCTCAACGTCGTA
Found at i:75836868 original size:22 final size:22
Alignment explanation
Indices: 75836798--75836868 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
75836788 CGGCTCAACA
* ** *
75836798 CCGTAGATAGGATGACTTAACG
1 CCGTAGACAGGACAACTAAACG
* * *
75836820 TCGTAGACAGGACGACTCAACG
1 CCGTAGACAGGACAACTAAACG
* *
75836842 TCGTAGACAGGACAACTAAAGG
1 CCGTAGACAGGACAACTAAACG
75836864 CCGTA
1 CCGTA
75836869 AATATCGTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.34, C:0.23, G:0.27, T:0.17
Consensus pattern (22 bp):
CCGTAGACAGGACAACTAAACG
Found at i:75841971 original size:50 final size:50
Alignment explanation
Indices: 75841886--75842100 Score: 137
Period size: 50 Copynumber: 4.3 Consensus size: 50
75841876 GCTAAATGAC
* * * * *
75841886 CTTGTATATTCGGCCACATAGGTACGTACATATGTGATGTTGTATTGGAT
1 CTTGAATATTCGGCCACATAGGTACGCACAAATGTGATATTATATTGGAT
* * *
75841936 CTTGAATATTCGGCCATGA-AGGTATGCACAAATGTGATATTATATTGAAT
1 CTTGAATATTCGGCCA-CATAGGTACGCACAAATGTGATATTATATTGGAT
* * * * * * * * * * * * *
75841986 -TTGTATATCCGACGATATAAGTAAGTACATATGTGTTGTTAAATTTGAT
1 CTTGAATATTCGGCCACATAGGTACGCACAAATGTGATATTATATTGGAT
** * * * * *
75842035 CTTTCATATTTGGCCATATAGGTAAGCACATATGTGATATTATATTTGAT
1 CTTGAATATTCGGCCACATAGGTACGCACAAATGTGATATTATATTGGAT
* *
75842085 CTTGTATATTTGGCCA
1 CTTGAATATTCGGCCA
75842101 AATGAGTGGT
Statistics
Matches: 127, Mismatches: 35, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
48 1 0.01
49 33 0.26
50 92 0.72
51 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (50 bp):
CTTGAATATTCGGCCACATAGGTACGCACAAATGTGATATTATATTGGAT
Found at i:75842058 original size:99 final size:100
Alignment explanation
Indices: 75841911--75842093 Score: 246
Period size: 99 Copynumber: 1.8 Consensus size: 100
75841901 ACATAGGTAC
** *
75841911 GTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCCATGAAGGTATGCACAAATGTGATAT
1 GTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCCATGAAGGTAAGCACAAATGTGATAT
75841976 TATA-TTGAAT-TTGTATATCCGACGATATAAGTAA
66 TATATTTG-ATCTTGTATATCCGACGATATAAGTAA
* * ** * *
75842010 GTACATATGTGTTGTTAAATTTGATCTTTCATATTTGGCCAT-ATAGGTAAGCACATATGTGATA
1 GTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCCATGA-AGGTAAGCACAAATGTGATA
75842074 TTATATTTGATCTTGTATAT
65 TTATATTTGATCTTGTATAT
75842094 TTGGCCAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
98 1 0.01
99 60 0.83
100 11 0.15
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (100 bp):
GTACATATGTGATGTTAAATTGGATCTTGAATATTCGGCCATGAAGGTAAGCACAAATGTGATAT
TATATTTGATCTTGTATATCCGACGATATAAGTAA
Found at i:75843346 original size:22 final size:22
Alignment explanation
Indices: 75843284--75843347 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
75843274 TAAGGGACAT
75843284 TGTGA-ATGTTT-TGAATATG-A
1 TGTGATATGTTTAT-AATATGTA
* *
75843304 TTTGATAATGTGTTA-ACTATGTA
1 TGTGAT-ATGT-TTATAATATGTA
75843327 TGTGATATGTTTATAATATGT
1 TGTGATATGTTTATAATATGT
75843348 TATGATTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 4 0.12
21 3 0.09
22 19 0.56
23 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (22 bp):
TGTGATATGTTTATAATATGTA
Found at i:75850316 original size:21 final size:24
Alignment explanation
Indices: 75850271--75850326 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
75850261 AGACAAATAG
75850271 ATTGGTATGATATTAGTTCATGAA
1 ATTGGTATGATATTAGTTCATGAA
*
75850295 ATTGGTATG-T-TTCGTT-ATGAA
1 ATTGGTATGATATTAGTTCATGAA
75850316 ATTGAGTATGA
1 ATTG-GTATGA
75850327 AATTTATTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 9 0.31
22 10 0.34
23 1 0.03
24 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (24 bp):
ATTGGTATGATATTAGTTCATGAA
Found at i:75850979 original size:22 final size:22
Alignment explanation
Indices: 75850917--75850980 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
75850907 TAAGGGACAT
75850917 TGTGA-ATGTTT-TGAATATG-A
1 TGTGATATGTTTAT-AATATGTA
* *
75850937 TTTGATAATGTGTTA-ACTATGTA
1 TGTGAT-ATGT-TTATAATATGTA
75850960 TGTGATATGTTTATAATATGT
1 TGTGATATGTTTATAATATGT
75850981 TATGATTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 4 0.12
21 3 0.09
22 19 0.56
23 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (22 bp):
TGTGATATGTTTATAATATGTA
Found at i:75851369 original size:51 final size:51
Alignment explanation
Indices: 75851293--75851394 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
75851283 TACATTTTAA
*
75851293 GATAATTTGGCACTTAAGCTGTGAAACATAAAAGTGAGCTTTATCATCACT
1 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
75851344 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
1 GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
75851395 CATCGGATAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (51 bp):
GATAATTTGGCACTTAAGCTATGAAACATAAAAGTGAGCTTTATCATCACT
Found at i:75853311 original size:13 final size:13
Alignment explanation
Indices: 75853295--75853320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75853285 TTTTTACCTT
75853295 TTAATTTTCTTAG
1 TTAATTTTCTTAG
75853308 TTAATTTTCTTAG
1 TTAATTTTCTTAG
75853321 ATAAAATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTAATTTTCTTAG
Found at i:75865490 original size:39 final size:39
Alignment explanation
Indices: 75865436--75865533 Score: 178
Period size: 39 Copynumber: 2.5 Consensus size: 39
75865426 TGTTTATCCA
* *
75865436 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATATCTG
1 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
75865475 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
1 GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
75865514 GACTTAAGGTCCGCAGGCTA
1 GACTTAAGGTCCGCAGGCTA
75865534 CGTGCTAGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
GACTTAAGGTCCGCAGGCTATATGCTGGAATTATAACCG
Found at i:75868370 original size:25 final size:26
Alignment explanation
Indices: 75868327--75868380 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 26
75868317 TTCTCCTAAA
75868327 TTTCAATTTTATTTGATTATTTAAT-T
1 TTTCAATTTTATTTGATTA-TTAATAT
75868353 TTTCAA-TTTA-TTGAATTATTAATAT
1 TTTCAATTTTATTTG-ATTATTAATAT
75868378 TTT
1 TTT
75868381 ATGCAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.31
25 12 0.46
26 6 0.23
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTTGATTATTAATAT
Found at i:75872403 original size:27 final size:27
Alignment explanation
Indices: 75872363--75872474 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
75872353 AGGAAGCCTC
*
75872363 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
75872390 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
75872417 CTGGTAGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
75872445 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
75872471 CTGG
1 CTGG
75872475 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:75872469 original size:54 final size:54
Alignment explanation
Indices: 75872363--75872483 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
75872353 AGGAAGCCTC
* * *
75872363 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
75872417 CTGGTAGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTAGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
* *
75872471 CTGGCAGCCATGC
1 CTGGTAGCTATGC
75872484 TGCATAATTC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 39 0.68
55 18 0.32
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:75875640 original size:23 final size:23
Alignment explanation
Indices: 75875599--75875645 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
75875589 AAGAAATGTG
75875599 ATTGATCTAACACAATTTTGTCAT
1 ATTGATCTAACACAATTTT-TCAT
75875623 ATTGAT-TAA-ACTAATTTTTCAT
1 ATTGATCTAACAC-AATTTTTCAT
75875645 A
1 A
75875646 AGTCGTGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 7 0.32
23 9 0.41
24 6 0.27
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (23 bp):
ATTGATCTAACACAATTTTTCAT
Found at i:75882523 original size:43 final size:43
Alignment explanation
Indices: 75882457--75882613 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
75882447 AGCTCGTACA
* * *
75882457 ATGCCAACATCCCAGACCTGGTCTTACATGTAAA-CAAATATCG
1 ATGCTAACGTCCCAGACATGGTCTTACATGTAAATCAAATA-CG
* *
75882500 ATGC-CACTGTCCCAGACAAGGTCTTACATG-AAATCAAATACG
1 ATGCTAAC-GTCCCAGACATGGTCTTACATGTAAATCAAATACG
* * **
75882542 ATGCTAACGTCCCAAACGTGGTCTTACATGTAGCTCATAAGT-CG
1 ATGCTAACGTCCCAGACATGGTCTTACATGTAAATCA-AA-TACG
* * **
75882586 ATGCCAACGTCCTAGATGTGGTCTTACA
1 ATGCTAACGTCCCAGACATGGTCTTACA
75882614 CGAAAACACA
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 30 0.32
43 35 0.37
44 28 0.30
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCTAACGTCCCAGACATGGTCTTACATGTAAATCAAATACG
Found at i:75882565 original size:42 final size:42
Alignment explanation
Indices: 75882461--75882573 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
75882451 CGTACAATGC
* *
75882461 CAACATCCCAGACCTGGTCTTACATGTAAACAAATATCGATG
1 CAACGTCCCAGACATGGTCTTACATGTAAACAAATATCGATG
* *
75882503 CCACTGTCCCAGACAAGGTCTTACATG-AAATCAAATA-CGATG
1 CAAC-GTCCCAGACATGGTCTTACATGTAAA-CAAATATCGATG
* *
75882545 CTAACGTCCCAAACGTGGTCTTACATGTA
1 C-AACGTCCCAGACATGGTCTTACATGTA
75882574 GCTCATAAGT
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 31 0.53
43 28 0.47
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
CAACGTCCCAGACATGGTCTTACATGTAAACAAATATCGATG
Found at i:75884609 original size:24 final size:24
Alignment explanation
Indices: 75884575--75884621 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
75884565 AATAGGAAGA
*
75884575 TATTTTTTTATTTTGTT-ATTTAT
1 TATTTTTTTATTTTATTAATTTAT
75884598 TATTTATTTTATTTTATTAATTTA
1 TATTT-TTTTATTTTATTAATTTA
75884622 GGTTAAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 11 0.52
25 5 0.24
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (24 bp):
TATTTTTTTATTTTATTAATTTAT
Found at i:75886918 original size:31 final size:31
Alignment explanation
Indices: 75886880--75886958 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
75886870 TTTAACGGTT
*
75886880 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
75886911 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
75886942 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
75886959 ACTATAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:75887041 original size:42 final size:42
Alignment explanation
Indices: 75886982--75887073 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
75886972 TGGCCCTTAG
* * *** *
75886982 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
75887024 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
75887066 GCCCATTT
1 GCCCATTT
75887074 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
Found at i:75887264 original size:26 final size:26
Alignment explanation
Indices: 75887218--75887315 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
75887208 CCTCTTTAAT
*
75887218 AACTGGGGCA-AAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
75887243 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
75887269 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
75887295 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
75887316 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 10 0.15
26 57 0.85
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:75888197 original size:27 final size:27
Alignment explanation
Indices: 75888121--75888207 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
75888111 TATTCGTCAA
* * *
75888121 TTTACCATACAGGGG-TATTACGATCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
75888148 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
* *
75888175 TTTACCCTATAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
75888202 TTTACC
1 TTTACC
75888208 TAATAGGGGT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:75888291 original size:27 final size:27
Alignment explanation
Indices: 75888261--75888368 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
75888251 GTAAATCTAC
75888261 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
75888288 AAACCAATGGTATTTCCA-TAATTTT-T
1 AAACCAAGGGTATTT-CAGTAATTTTGT
* * *
75888314 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
75888344 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
75888369 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 39 0.59
28 9 0.14
29 16 0.24
30 1 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:75888446 original size:81 final size:81
Alignment explanation
Indices: 75888349--75888555 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 81
75888339 TTTGTAAATC
*
75888349 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTGGTGATATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGG-GATATTT
* *
75888413 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* * *
75888430 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGATATTTT
* *
75888495 AGCAATTTTATAGACT
66 AGCAATTTTACAAACT
*** * *
75888511 A-GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTT
75888556 TGTAAATCGA
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 38 0.34
81 70 0.63
82 3 0.03
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGATATTTT
AGCAATTTTACAAACT
Found at i:75888564 original size:27 final size:27
Alignment explanation
Indices: 75888323--75888692 Score: 196
Period size: 27 Copynumber: 13.7 Consensus size: 27
75888313 TAGAAAGTCA
* *
75888323 AGGGTATTTCT-GTAACTTTGTAAATC-
1 AGGGTATTT-TGGTAATTTTATAAATCG
* *
75888349 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * *
75888377 AGGGTATTTCGGTAATTTCACAAA-CTG
1 AGGGTATTTTGGTAATTTTATAAATC-G
* * *
75888404 -GTGATATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* *
75888430 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * * *
75888458 AAGGTATTTCGGTAATTTTACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
75888484 AGGGGTATTTTAGCAATTTTATAGA-CT
1 A-GGGTATTTTGGTAATTTTATAAATCG
**
75888511 AGGGTATTTTGGTAATTTTATTGATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*
75888538 AGGGTATTTTGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
***** * * **
75888565 AGGGTAAAACAGTAATTCTGTAAATTA
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * *
75888592 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
***** *
75888619 AGGGTAAAAAAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
75888646 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*
75888673 AGGGTACTTTGGTAATTTTA
1 AGGGTATTTTGGTAATTTTA
75888693 CAATTTGAGG
Statistics
Matches: 278, Mismatches: 56, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
26 24 0.09
27 251 0.90
28 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:75902547 original size:15 final size:16
Alignment explanation
Indices: 75902516--75902546 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75902506 ATTAAATTCC
75902516 TACCCAAAAACCAAAA
1 TACCCAAAAACCAAAA
*
75902532 TACCCAAAACCCAAA
1 TACCCAAAAACCAAA
75902547 TCCAATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.35, G:0.00, T:0.06
Consensus pattern (16 bp):
TACCCAAAAACCAAAA
Found at i:75902786 original size:16 final size:16
Alignment explanation
Indices: 75902751--75902785 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
75902741 CACCCAACCT
*
75902751 AAAATAAACCAAATAA
1 AAAATAAACAAAATAA
75902767 AAAATAAA-AAAATAA
1 AAAATAAACAAAATAA
75902782 AAAA
1 AAAA
75902786 AATTAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (16 bp):
AAAATAAACAAAATAA
Found at i:75909181 original size:49 final size:49
Alignment explanation
Indices: 75909112--75909206 Score: 163
Period size: 49 Copynumber: 1.9 Consensus size: 49
75909102 AATGTTCGTA
*
75909112 TTATTTTTGTATCTGTAAATCAATGTTGGTCCATATTATTTGTTGGATT
1 TTATTTTTGTATATGTAAATCAATGTTGGTCCATATTATTTGTTGGATT
* *
75909161 TTATTTTTTTATATGTAAATCAATTTTGGTCCATATTATTTGTTGG
1 TTATTTTTGTATATGTAAATCAATGTTGGTCCATATTATTTGTTGG
75909207 TCGAATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.23, C:0.07, G:0.15, T:0.55
Consensus pattern (49 bp):
TTATTTTTGTATATGTAAATCAATGTTGGTCCATATTATTTGTTGGATT
Found at i:75914386 original size:40 final size:39
Alignment explanation
Indices: 75914336--75914423 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 39
75914326 GAAAACATTT
***
75914336 AAAAAAATACAAATTGATAAATTTTGAAAACAGATTTTTG
1 AAAAAAATACAAACCAATAAATTTTGAAAACA-ATTTTTG
* * * *
75914376 AAAAAAATACATACCAATGATTTTTGAAAACAATTTTTT
1 AAAAAAATACAAACCAATAAATTTTGAAAACAATTTTTG
75914415 AAAAAAATA
1 AAAAAAATA
75914424 TACACTGACA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 15 0.37
40 26 0.63
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (39 bp):
AAAAAAATACAAACCAATAAATTTTGAAAACAATTTTTG
Found at i:75920103 original size:48 final size:47
Alignment explanation
Indices: 75920048--75920378 Score: 321
Period size: 48 Copynumber: 6.9 Consensus size: 47
75920038 GGTGAATTGT
* * *
75920048 CGATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATC-ATGC
* * *
75920096 CGATGCCATGTCCCAGGCATGGTCTTACACTAGCTCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGC
** * * *
75920144 TAATGCCATGTCCCAGACATGGTCTTACACTAGCAT-ACATATCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATATC-ATGC
** * *
75920192 CGACACCATGTCCCAGACATGGTCTTACATTGGCTCTCAT-TACATTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CA-TGC
* * *
75920240 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-TACATTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CA-TGC
* * * *
75920288 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAT-GC
* *
75920336 CGA-GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
75920379 CTCAAATGCC
Statistics
Matches: 240, Mismatches: 36, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
47 38 0.16
48 199 0.83
49 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGC
Found at i:75920313 original size:144 final size:143
Alignment explanation
Indices: 75920053--75920368 Score: 358
Period size: 144 Copynumber: 2.2 Consensus size: 143
75920043 ATTGTCGATG
* * * * **
75920053 CCATGTTCCAAACATGGTCTTACACTGGCT-TACA-TATCGA-GGCCGATGCCATGTCCCAGGCA
1 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATTA-C-ATTGTCGATGCCATGTCCCAAACA
*
75920115 TGGTCTTACACTAGCTCTCATCTCAATGCTAATGCCATGTCCCAGACATGGTCTTACACTAGCAT
63 TGGTCTTACACTAGCTCTCATCTCAATGCTAATGCCATGTCCCAAACATGGTCTTACACTAGC-T
75920180 -ACATATCAAT-ACCGACA
127 CACATATC-ATGACCGA-A
* *
75920197 CCATGTCCCAGACATGGTCTTACATTGGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATTACATTGTCGATGCCATGTCCCAAACATGG
* * * * *
75920262 TCTTACACTGGCTCTCAT-TACATTG-TCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCT
66 TCTTACACTAGCTCTCATCT-CAATGCT-AATGCCATGTCCCAAACATGGTCTTACACTAGCTCA
* * *
75920325 CATATCGTGGCCGAG
129 CATATCATGACCGAA
75920340 CCATGTCCCAGACATGGTCTTACACTGGC
1 CCATGTCCCAGACATGGTCTTACACTGGC
75920369 ACACATATCA
Statistics
Matches: 147, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
143 33 0.22
144 111 0.76
145 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (143 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCTCATTACATTGTCGATGCCATGTCCCAAACATGG
TCTTACACTAGCTCTCATCTCAATGCTAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
TATCATGACCGAA
Found at i:75922391 original size:55 final size:54
Alignment explanation
Indices: 75922304--75922558 Score: 287
Period size: 55 Copynumber: 4.8 Consensus size: 54
75922294 ATTAGGGTTT
* *
75922304 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGT-AAGTTTCTAAGGC
* * * *
75922359 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
75922414 AAAGG-TCCCATGTAAGACCATGGCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
75922467 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* *
75922516 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
75922559 GTACCCGTGT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 41 0.24
52 7 0.04
53 43 0.25
54 10 0.06
55 68 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:75922510 original size:108 final size:110
Alignment explanation
Indices: 75922311--75922511 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
75922301 TTTAAGGATA
*
75922311 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGAAACCATGTAAGA
*
75922376 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
75922421 CCATGTAAGACCATGGCAAGGCATGGC-ATTGGT-GAG-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTC-TAAGGCAAGGAAACCATGTAAG
*
75922483 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
75922512 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.58
109 6 0.07
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:75922662 original size:23 final size:24
Alignment explanation
Indices: 75922632--75922676 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
75922622 AAGGTAAGGT
*
75922632 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
75922655 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
75922677 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:75944916 original size:48 final size:48
Alignment explanation
Indices: 75944844--75945167 Score: 246
Period size: 48 Copynumber: 6.8 Consensus size: 48
75944834 AGGGTGAATT
* * * * * *
75944844 GCCGATACCATGTTCCAAATATGGTCTTACATTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAG
* * * *
75944892 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCTTAAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAG
* * * * * *
75944940 GCTGATGCCATGTCCCTAACATGGTCTTACACTAG-TGCACATATCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-CTCATATCGAG
* * * * *
75944988 GTCGATGCAATGTCCCAGACATGGTCATACACTGGCTCTCAT-TAC-ATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-G
** * * *
75945036 ATCGATGCCATGTTCCAAACATGGCCTTACACTGGCTCTCAT-TAC-ATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-G
** * * *
75945084 GTTGATCCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAG
* * *
75945132 GCCGATGCCATGTCCTAGACATGGTCTTACAATGGC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
75945168 ACACGTATCA
Statistics
Matches: 221, Mismatches: 47, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
47 5 0.02
48 213 0.96
49 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAG
Found at i:75945019 original size:96 final size:94
Alignment explanation
Indices: 75944894--75945162 Score: 285
Period size: 96 Copynumber: 2.8 Consensus size: 94
75944884 ATGTCGAGGC
*
75944894 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCTTAATGTGGCTGATGCCATGTCCCTAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAATGTGGC-GATGCCATGT-CCTAA
75944959 CATGGTCTTACACTAG-TGCACA-TATCAATGT
64 CATGGTCTTACACTAGCT-CACATTA-CAATGT
* * ** *
75944990 CGATGCAATGTCCCAGACATGGTCATACACTGGCTCTCATTACAT-TATCGATGCCATGTTCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TTA-ATGTGGCGATGCCATG-TCCTA
* * * *
75945054 ACATGGCCTTACACTGGCTCTCATTACATTGT
63 ACATGGTCTTACACTAGCTCACATTACAATGT
* * * * *
75945086 TGATCCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCCGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAAT-GTGG-CGATGCCATGTCCTA-
75945150 ACATGGTCTTACA
63 ACATGGTCTTACA
75945163 ATGGCACACG
Statistics
Matches: 143, Mismatches: 21, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
93 2 0.01
95 6 0.04
96 124 0.87
97 9 0.06
98 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTTAATGTGGCGATGCCATGTCCTAACA
TGGTCTTACACTAGCTCACATTACAATGT
Found at i:75945127 original size:144 final size:144
Alignment explanation
Indices: 75944894--75945167 Score: 340
Period size: 144 Copynumber: 1.9 Consensus size: 144
75944884 ATGTCGAGGC
* ** * *
75944894 CGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCTTAATGTGGCTGATGCCATGTCCCTAA
1 CGATGCCATGTCCCAAACATGGCCTTACACTGGCTCTCTTAATGTGGCTGATCCCATGTCCCAAA
* *
75944959 CATGGTCTTACACTAGTGCACATATCAAT-GTCGATGCAATGTCCCAGACATGGTCATACACTGG
66 CATGGTCTTACACTAGTGCACATATC-ATGGCCGATGCAATGTCCCAGACATGGTCATACAATGG
75945023 CTCTCATTACATTAT
130 CTCTCATTACATTAT
* * *
75945038 CGATGCCATGTTCCAAACATGGCCTTACACTGGCTCTCATTACAT-T-GTTGATCCCATGTTCCA
1 CGATGCCATGTCCCAAACATGGCCTTACACTGGCTCTC-TTA-ATGTGGCTGATCCCATGTCCCA
* * * * * *
75945101 AACATGGTCTTACACTGGCT-CTCATATCGTGGCCGATGCCATGTCCTAGACATGGTCTTACAAT
64 AACATGGTCTTACACTAG-TGCACATATCATGGCCGATGCAATGTCCCAGACATGGTCATACAAT
75945165 GGC
128 GGC
75945168 ACACGTATCA
Statistics
Matches: 110, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
143 1 0.01
144 102 0.93
145 5 0.05
146 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (144 bp):
CGATGCCATGTCCCAAACATGGCCTTACACTGGCTCTCTTAATGTGGCTGATCCCATGTCCCAAA
CATGGTCTTACACTAGTGCACATATCATGGCCGATGCAATGTCCCAGACATGGTCATACAATGGC
TCTCATTACATTAT
Found at i:75948387 original size:51 final size:52
Alignment explanation
Indices: 75948311--75948442 Score: 182
Period size: 50 Copynumber: 2.6 Consensus size: 52
75948301 TGAGGTCGTA
* *
75948311 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATATCAGAT-ACTTAGATCACG
** *
75948362 TGTGTAGTACTAAGTGCAGGCTACTA--CGTATATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATATCAGATACTTAGATCACG
75948412 TGTGTAGTACTAAGTGCAGGCTACTATGCGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGT
75948443 GCCAGATAGC
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
49 4 0.06
50 36 0.50
51 29 0.40
52 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (52 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTATATCAGATACTTAGATCACG
Found at i:75950016 original size:20 final size:21
Alignment explanation
Indices: 75949977--75950016 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
75949967 AAATCGATAT
**
75949977 CTTAGGAAAATTTTGGGAAAA
1 CTTAGGAAAATTTTACGAAAA
75949998 CTTA-GAAAATTTTACGAAA
1 CTTAGGAAAATTTTACGAAA
75950017 TACAGGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.30
Consensus pattern (21 bp):
CTTAGGAAAATTTTACGAAAA
Found at i:75957843 original size:26 final size:26
Alignment explanation
Indices: 75957814--75957892 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 26
75957804 TTTGCCATAT
75957814 ATACTGATACTGGCAGCGTTGCTGCG
1 ATACTGATACTGGCAGCGTTGCTGCG
* * * * * *
75957840 ATACTGTTACTAGTAGCTTTGATGTG
1 ATACTGATACTGGCAGCGTTGCTGCG
* *
75957866 TTA-TTATTACTGGCAGCGTTGCTGCG
1 ATACTGA-TACTGGCAGCGTTGCTGCG
75957892 A
1 A
75957893 CATTGGTGTG
Statistics
Matches: 37, Mismatches: 15, Indels: 2
0.69 0.28 0.04
Matches are distributed among these distances:
25 1 0.03
26 36 0.97
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (26 bp):
ATACTGATACTGGCAGCGTTGCTGCG
Found at i:75961525 original size:26 final size:27
Alignment explanation
Indices: 75961473--75961526 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
75961463 ATGACCAAAA
* * *
75961473 TACCCCTATAGGGTAAAATGACTATTT
1 TACCCCTAGAGGGTAAAATAACAATTT
*
75961500 TACCCCTCGAGGGT-AAATAACAATTT
1 TACCCCTAGAGGGTAAAATAACAATTT
75961526 T
1 T
75961527 GTGCTACGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAATAACAATTT
Found at i:75961689 original size:27 final size:27
Alignment explanation
Indices: 75961632--75961700 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
75961622 AAGTATATTG
* ** * *
75961632 TACTAGTGGCTTTAACACATATGTTGT
1 TACTGGTGGCTTTGCCACATATGCTGA
75961659 TACTGGTGGCTTTGCCACATATGCTGA
1 TACTGGTGGCTTTGCCACATATGCTGA
**
75961686 TACTGGCAGCTTTGC
1 TACTGGTGGCTTTGC
75961701 TGTGATACTG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.36
Consensus pattern (27 bp):
TACTGGTGGCTTTGCCACATATGCTGA
Found at i:75961718 original size:26 final size:26
Alignment explanation
Indices: 75961686--75961756 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
75961676 CATATGCTGA
* *
75961686 TACTGGCAGCTTTGCTGTGATAC-TGT
1 TACTGGCAGCTTTGCTGCG-TACTTAT
* *
75961712 TACTGGCAGGTTTGCTGCGTTCTTAT
1 TACTGGCAGCTTTGCTGCGTACTTAT
*
75961738 TACTGGCATCTTTGCTGCG
1 TACTGGCAGCTTTGCTGCG
75961757 ACATTGGTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGTACTTAT
Found at i:75966403 original size:46 final size:45
Alignment explanation
Indices: 75966347--75966522 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
75966337 TGGTTGAGCA
75966347 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
75966393 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
75966440 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
75966486 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75966523 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:75966503 original size:93 final size:93
Alignment explanation
Indices: 75966344--75966514 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
75966334 GGATGGTTGA
* * *
75966344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75966409 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
75966437 GCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75966502 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75966515 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:75969816 original size:46 final size:45
Alignment explanation
Indices: 75969766--75969941 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
75969756 TGGTTGAGCA
75969766 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
75969812 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
75969859 TCC-AAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
75969905 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75969942 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:75969922 original size:93 final size:93
Alignment explanation
Indices: 75969763--75969933 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75969753 GGATGGTTGA
* *
75969763 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75969828 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
75969856 GCATCC-AAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75969920 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
75969934 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:75971586 original size:26 final size:26
Alignment explanation
Indices: 75971544--75971607 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
75971534 ATGGAGGAAG
* *
75971544 TATACT-ATACTGGTGGCTTTGCCACA
1 TATACTGATACT-ATGGCTTTACCACA
*
75971570 TATACTGTTACTATGGCTTTACCACA
1 TATACTGATACTATGGCTTTACCACA
75971596 TATACTGATACT
1 TATACTGATACT
75971608 GGTAGCTTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 29 0.88
27 4 0.12
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (26 bp):
TATACTGATACTATGGCTTTACCACA
Found at i:75974767 original size:28 final size:27
Alignment explanation
Indices: 75974703--75974854 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
75974693 TTATTAAGTC
* *
75974703 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
75974730 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
75974758 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
75974785 CGCACACTTAGTGCTACATAGTCAAAAT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
75974813 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
75974840 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75974855 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 66 0.56
28 51 0.44
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75974787 original size:55 final size:55
Alignment explanation
Indices: 75974703--75974854 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
75974693 TTATTAAGTC
* * * *
75974703 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAAT
* *
75974758 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAAT
* *
75974813 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
75974855 GCACAATTTA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAAAT
Found at i:75991882 original size:26 final size:26
Alignment explanation
Indices: 75991853--75991905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
75991843 CGCAGCAATG
75991853 TCGCAGCAAAGCTGCCAGTAACAGTA
1 TCGCAGCAAAGCTGCCAGTAACAGTA
* *
75991879 TCGCAGCAAAGCTGGCAGTATCAGTA
1 TCGCAGCAAAGCTGCCAGTAACAGTA
75991905 T
1 T
75991906 ATGTGGCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.19
Consensus pattern (26 bp):
TCGCAGCAAAGCTGCCAGTAACAGTA
Found at i:75995879 original size:28 final size:27
Alignment explanation
Indices: 75995822--75995973 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
75995812 TAAATTGTGC
* *
75995822 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75995849 AGCACTAAGTGTGCGATTTTGACTATGT
1 AGCACTAAGTGTGCGA-GTTGACTATGT
75995877 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75995904 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
75995932 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
75995959 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75995974 GACTTAATAA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 66 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:75995887 original size:55 final size:55
Alignment explanation
Indices: 75995822--75995973 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
75995812 TAAATTGTGC
* * *
75995822 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGATTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
75995877 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
75995932 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
75995974 GACTTAATAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:76004051 original size:28 final size:27
Alignment explanation
Indices: 76003994--76004145 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
76003984 TAAATTGTGC
* *
76003994 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76004021 AGCACTAAGTGTGCGATTTTGACTATGT
1 AGCACTAAGTGTGCGA-GTTGACTATGT
76004049 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76004076 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
76004104 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
76004131 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76004146 GACTTAATAA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 66 0.56
28 51 0.44
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:76004059 original size:55 final size:55
Alignment explanation
Indices: 76003994--76004145 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
76003984 TAAATTGTGC
* * *
76003994 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGATTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
76004049 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
76004104 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
76004146 GACTTAATAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:76016327 original size:113 final size:113
Alignment explanation
Indices: 76016129--76016362 Score: 387
Period size: 113 Copynumber: 2.1 Consensus size: 113
76016119 CTCCGATCCA
* * * * *
76016129 CCTAAGCCTAGGGATTACCTGTATAGATAAAACAGAAGGGGTGAGTTTACGCAAACTCAGTGTGT
1 CCTAAGCCTACGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACACAAACTCAGTATGT
* *
76016194 AATCGCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTGGG
66 AATCCCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTAGG
*
76016242 CCTAAGCCTACGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACATAAACTCAGTATGT
1 CCTAAGCCTACGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACACAAACTCAGTATGT
*
76016307 AATCCCCATGCAAACAAACAAATAGCATACAGATAATCACAGTCTAGG
66 AATCCCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTAGG
76016355 CCTAAGCC
1 CCTAAGCC
76016363 CATTTTTAGT
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 112 1.00
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (113 bp):
CCTAAGCCTACGGATTACCTGTACAGATAAAACAGAAAGGGTGAGTTTACACAAACTCAGTATGT
AATCCCCATGCAAACAAACAAATAACATACAGATAATCACAGTCTAGG
Found at i:76018207 original size:20 final size:20
Alignment explanation
Indices: 76018183--76018238 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
76018173 GGGCATGAAT
* * *
76018183 ATGCAATCAAAGGCACCGAA
1 ATGCAAACAGAGGCACCAAA
*
76018203 CTGCAAACAGAGGCACCAAA
1 ATGCAAACAGAGGCACCAAA
76018223 ATGCAAACAGAGGCAC
1 ATGCAAACAGAGGCAC
76018239 TGAAGAGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.45, C:0.27, G:0.21, T:0.07
Consensus pattern (20 bp):
ATGCAAACAGAGGCACCAAA
Found at i:76018248 original size:20 final size:20
Alignment explanation
Indices: 76018156--76018249 Score: 57
Period size: 20 Copynumber: 4.7 Consensus size: 20
76018146 TGGGGAGCTA
* * *
76018156 CACTGAAGTGCAGACAGGGG
1 CACTGAAGAGCAAACAGAGG
* * *
76018176 CA-TGAATATGCAATCAAAGG
1 CACTGAAGA-GCAAACAGAGG
* **
76018196 CACCGAACTGCAAACAGAGG
1 CACTGAAGAGCAAACAGAGG
* *
76018216 CAC-CAAAATGCAAACAGAGG
1 CACTGAAGA-GCAAACAGAGG
76018236 CACTGAAGAGCAAA
1 CACTGAAGAGCAAA
76018250 TAAATAGAGG
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
19 6 0.11
20 42 0.78
21 6 0.11
ACGTcount: A:0.43, C:0.22, G:0.26, T:0.10
Consensus pattern (20 bp):
CACTGAAGAGCAAACAGAGG
Found at i:76018391 original size:43 final size:43
Alignment explanation
Indices: 76018337--76018423 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
76018327 GATTACTATG
76018337 TTCAACCAGGAAGTAAACATAATTTCATTACTTTTTTATGTAT
1 TTCAACCAGGAAGTAAACATAATTTCATTACTTTTTTATGTAT
*
76018380 TTCAACTAGGAAGTAAACATAATTTCATTACTTTTTTATGTAT
1 TTCAACCAGGAAGTAAACATAATTTCATTACTTTTTTATGTAT
76018423 T
1 T
76018424 CAAGGGCACT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (43 bp):
TTCAACCAGGAAGTAAACATAATTTCATTACTTTTTTATGTAT
Found at i:76019493 original size:21 final size:21
Alignment explanation
Indices: 76019467--76019516 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
76019457 CTTAATTAAC
76019467 TAACCAAACGATAAGATTTCT
1 TAACCAAACGATAAGATTTCT
*
76019488 TAACCAAACGGTAAGATTTCT
1 TAACCAAACGATAAGATTTCT
76019509 TAACCAAA
1 TAACCAAA
76019517 TTTTAATACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (21 bp):
TAACCAAACGATAAGATTTCT
Found at i:76021857 original size:43 final size:44
Alignment explanation
Indices: 76021749--76021913 Score: 194
Period size: 43 Copynumber: 3.8 Consensus size: 44
76021739 CATAAGGTTC
* * *
76021749 CGATATATGATTT-CATGTAAGGCCATGTCTGGGACGTTGACAT
1 CGATATTTGATTTACATGTAAGACCATGTCTGGGACATTGACAT
* * *
76021792 CGAT-TTGAGATTTACATGTAAGACCATGTCTAGGACATTGCCAT
1 CGATATT-TGATTTACATGTAAGACCATGTCTGGGACATTGACAT
* * * *
76021836 C-ATATTTGATTTACTTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGATTTACATGTAAGACCATGTCTGGGACATTGACAT
*
76021879 CGATATTTGA-TTACATGTAAGACCATGTTTGGGAC
1 CGATATTTGATTTACATGTAAGACCATGTCTGGGAC
76021914 GATGGCATTG
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.01
43 65 0.63
44 37 0.36
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (44 bp):
CGATATTTGATTTACATGTAAGACCATGTCTGGGACATTGACAT
Found at i:76025337 original size:19 final size:19
Alignment explanation
Indices: 76025313--76025352 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
76025303 CTACCATTTG
76025313 TAGAAGTACCTTTTTATAA
1 TAGAAGTACCTTTTTATAA
76025332 TAGAAGTACCTTTTTATAA
1 TAGAAGTACCTTTTTATAA
76025351 TA
1 TA
76025353 TACATACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (19 bp):
TAGAAGTACCTTTTTATAA
Found at i:76040684 original size:48 final size:48
Alignment explanation
Indices: 76040612--76040856 Score: 296
Period size: 48 Copynumber: 5.1 Consensus size: 48
76040602 TCATGAAACC
* *
76040612 ATGATAAATGTAG-CTGTGTAAGACCATGTTTGGGACATGGCATCGGTG
1 ATGATAAATGT-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
** *
76040660 ATGATAAATGTGCTTGTGTGAGACCATGTCTGGGACATGGCATCGGTG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
* * *
76040708 ATGATATATGTGCCAATGTAAGACCATGTCTGGGACAT-GCATCGGCG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
* * * * *
76040755 ATGTTATATGTGCCAGTGTAAGACCACGTCTGGGACATGGCATCAGCG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
* * * * * *
76040803 ATGATACATGTGTCACTGTAAGACCATGTCTAGGACATGGAATCGATG
1 ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
76040851 ATGATA
1 ATGATA
76040857 TGTGGTTTCA
Statistics
Matches: 172, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
47 44 0.26
48 128 0.74
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGATAAATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTG
Found at i:76040790 original size:95 final size:95
Alignment explanation
Indices: 76040628--76040841 Score: 293
Period size: 95 Copynumber: 2.2 Consensus size: 95
76040618 AATGTAGCTG
* * ** * *
76040628 TGTAAGACCATGTTTGGGACATGGCATCGGTGATGATAAATGTGCTTGTGTGAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCGATGATAAATGTGCCAGTGTAAGACCACGTCTGG
* * *
76040693 GACATGGCATCGGTGATGATATATGTGCCAA
65 GACATGGCATCAGCGATGATACATGTGCCAA
* *
76040724 TGTAAGACCATGTCTGGGACATGCATCGGCGATGTTATATGTGCCAGTGTAAGACCACGTCTGGG
1 TGTAAGACCATGTCTGGGACATGCATCGGCGATGATAAATGTGCCAGTGTAAGACCACGTCTGGG
* *
76040789 ACATGGCATCAGCGATGATACATGTGTCAC
66 ACATGGCATCAGCGATGATACATGTGCCAA
*
76040819 TGTAAGACCATGTCTAGGACATG
1 TGTAAGACCATGTCTGGGACATG
76040842 GAATCGATGA
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
95 83 0.80
96 21 0.20
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCGATGATAAATGTGCCAGTGTAAGACCACGTCTGGG
ACATGGCATCAGCGATGATACATGTGCCAA
Found at i:76040871 original size:48 final size:47
Alignment explanation
Indices: 76040628--76040889 Score: 285
Period size: 48 Copynumber: 5.5 Consensus size: 47
76040618 AATGTAGCTG
* * **
76040628 TGTAAGACCATGTTTGGGACATGGCATCGGTGATGATAAATGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTG-TCA
* *
76040676 TGTGAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGTC-A
* * *
76040724 TGTAAGACCATGTCTGGGACAT-GCATCGGCGATGTTATATGTGCCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGTCA
* * * *
76040770 GTGTAAGACCACGTCTGGGACATGGCATCAGCGATGATACATGTGTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGTCA
* * * * *
76040818 CTGTAAGACCATGTCTAGGACATGGAATCGATGATGATATGTGGTTTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATAT-GTGTCA
*
76040867 TGTAAGACTATGTC-GAGGACATG
1 TGTAAGACCATGTCTG-GGACATG
76040890 ACATTGGTAC
Statistics
Matches: 183, Mismatches: 26, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 42 0.23
48 135 0.74
49 5 0.03
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGTCA
Found at i:76047169 original size:21 final size:20
Alignment explanation
Indices: 76047137--76047185 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
76047127 TTCTTCGAAT
* *
76047137 TTGTTTACCTATTATTATTA
1 TTGTTTATCTATTACTATTA
76047157 TTCGTTTATCTATTACTATTA
1 TT-GTTTATCTATTACTATTA
76047178 TTGTTTAT
1 TTGTTTAT
76047186 ATTACAAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.61
Consensus pattern (20 bp):
TTGTTTATCTATTACTATTA
Found at i:76050703 original size:49 final size:49
Alignment explanation
Indices: 76050626--76050853 Score: 368
Period size: 49 Copynumber: 4.7 Consensus size: 49
76050616 TCTATTGTGA
* *
76050626 GGTCACGTGTGTAGT-CTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATT
*
76050674 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATT
** *
76050723 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATT
*
76050772 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATT
**
76050821 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
76050854 TGCGTACTAG
Statistics
Matches: 166, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 14 0.08
49 152 0.92
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATAATT
Found at i:76050866 original size:98 final size:98
Alignment explanation
Indices: 76050633--76050853 Score: 435
Period size: 98 Copynumber: 2.3 Consensus size: 98
76050623 TGAGGTCACG
76050633 TGTGTAGT-CTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
76050697 CAGGCTACTACGTGCACCGGATAATTGGTCGTA
66 CAGGCTACTACGTGCACCGGATAATTGGTCGTA
76050730 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
76050795 CAGGCTACTACGTGCACCGGATAATTGGTCGTA
66 CAGGCTACTACGTGCACCGGATAATTGGTCGTA
76050828 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
76050854 TGCGTACTAG
Statistics
Matches: 123, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
97 8 0.07
98 115 0.93
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGTGCACCGGATAATTGGTCGTA
Found at i:76054145 original size:14 final size:13
Alignment explanation
Indices: 76054125--76054156 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
76054115 AATATTTAAC
76054125 TTGTTCTTAATTA
1 TTGTTCTTAATTA
76054138 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
76054152 TTGTT
1 TTGTT
76054157 TTGATATCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:76064031 original size:30 final size:30
Alignment explanation
Indices: 76063997--76064056 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
76063987 CTTTAATACG
*
76063997 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
76064027 AACTTTTGCATAATTACACTTTTGTCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
76064057 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:76075903 original size:32 final size:32
Alignment explanation
Indices: 76075867--76075965 Score: 75
Period size: 32 Copynumber: 3.2 Consensus size: 32
76075857 ATATGCACTA
76075867 ATACATAAGAATATTTCATCGCAGACTTTATT
1 ATACATAAGAATATTTCATCGCAGACTTTATT
* * * * *
76075899 ATAC---A-AACATTT--TGGACAGAATATGCACTA
1 ATACATAAGAATATTTCATCG-CAGACT-T-TA-TT
76075929 ATACATAAGAATATTTCATCGCAGACTTTATT
1 ATACATAAGAATATTTCATCGCAGACTTTATT
76075961 ATACA
1 ATACA
76075966 AACATACCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 20
0.61 0.13 0.26
Matches are distributed among these distances:
26 2 0.04
27 5 0.11
28 7 0.15
29 2 0.04
30 5 0.11
32 10 0.21
33 2 0.04
34 7 0.15
35 5 0.11
36 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.33
Consensus pattern (32 bp):
ATACATAAGAATATTTCATCGCAGACTTTATT
Found at i:76075943 original size:62 final size:62
Alignment explanation
Indices: 76075846--76075970 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
76075836 ATCATAAGGC
76075846 TTTTGGACAGAATATGCACTAATACATAAGAATATTTCATCGCAGACTTTATTATACAAACA
1 TTTTGGACAGAATATGCACTAATACATAAGAATATTTCATCGCAGACTTTATTATACAAACA
76075908 TTTTGGACAGAATATGCACTAATACATAAGAATATTTCATCGCAGACTTTATTATACAAACA
1 TTTTGGACAGAATATGCACTAATACATAAGAATATTTCATCGCAGACTTTATTATACAAACA
76075970 T
1 T
76075971 ACCATTACCA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (62 bp):
TTTTGGACAGAATATGCACTAATACATAAGAATATTTCATCGCAGACTTTATTATACAAACA
Found at i:76076363 original size:22 final size:22
Alignment explanation
Indices: 76076335--76076456 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
76076325 TTCCACATCC
76076335 ATCACATTGGCCATTCGACCTT
1 ATCACATTGGCCATTCGACCTT
** * *
76076357 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGACCTT
*
76076381 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
* * *
76076404 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
76076428 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
76076451 ATCACA
1 ATCACA
76076457 CATACACATG
Statistics
Matches: 71, Mismatches: 17, Indels: 24
0.63 0.15 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 13 0.18
25 20 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:76076379 original size:47 final size:47
Alignment explanation
Indices: 76076307--76076556 Score: 360
Period size: 47 Copynumber: 5.3 Consensus size: 47
76076297 CCCTTCGGGA
* * * *
76076307 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGAC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
76076354 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
76076401 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
76076448 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
76076495 CTTATCACACATACACATGTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
76076542 CCTATCACATATATA
1 CTTATCACATATATA
76076557 TACTTGTACA
Statistics
Matches: 188, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 187 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:76082721 original size:13 final size:13
Alignment explanation
Indices: 76082703--76082737 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
76082693 CTAGGATATC
76082703 AAAACAAGAATTA
1 AAAACAAGAATTA
*
76082716 AAAACACATAATTA
1 AAAACA-AGAATTA
76082730 AAAACAAG
1 AAAACAAG
76082738 TTAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.69, C:0.11, G:0.06, T:0.14
Consensus pattern (13 bp):
AAAACAAGAATTA
Found at i:76083795 original size:48 final size:48
Alignment explanation
Indices: 76083517--76083792 Score: 337
Period size: 48 Copynumber: 5.8 Consensus size: 48
76083507 ACCATTGTAA
* * ** *
76083517 ATGTGCCTGTGTAAAACCATGTCTGGGACATCACATCGGCGATGATAA
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
76083565 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
76083613 ATGTGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
76083661 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * *
76083709 GTG-GATTCA-TGTAAGACCATGTCTAGGACATGGAATTGGCGATGATAT
1 ATGTG--CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
76083757 GTG-GATTCA-TGTAAGACCATGTC-GAGGACATGGCAT
1 ATGTG--CCAGTGTAAGACCATGTCTG-GGACATGGCAT
76083793 TGGTGCTTTA
Statistics
Matches: 209, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.00
48 206 0.99
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:76086016 original size:6 final size:6
Alignment explanation
Indices: 76086005--76086030 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
76085995 GGTCTACTCC
76086005 AAAATG AAAATG AAAATG AAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AA
76086031 TAGATGGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:76090493 original size:16 final size:16
Alignment explanation
Indices: 76090459--76090492 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
76090449 ATGGGTTAAT
76090459 AAATAAATAATAATAA
1 AAATAAATAATAATAA
*
76090475 AAATATATAAT-ATAA
1 AAATAAATAATAATAA
76090490 AAA
1 AAA
76090493 AATAGGCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATAAATAATAATAA
Found at i:76097263 original size:25 final size:25
Alignment explanation
Indices: 76097231--76097325 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
76097221 CTCTTTTAAT
* *
76097231 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
76097256 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
76097281 AACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
76097306 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76097326 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:76097560 original size:27 final size:27
Alignment explanation
Indices: 76097530--76097719 Score: 215
Period size: 27 Copynumber: 7.0 Consensus size: 27
76097520 GGGGCAAAAT
* * *
76097530 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76097557 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76097584 AG-AATTTCTACCCTACAAGGGTATTTC
1 GGTAA-TTCTACCCTACAAGGGTATTTC
*
76097611 GATAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* * *
76097638 AGTAATTCTACCCTACAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76097665 GGTAATTCTACCCTAC-AGGGTTATTTT
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * *
76097692 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
76097719 G
1 G
76097720 ATACTTTACA
Statistics
Matches: 137, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.06
27 122 0.89
28 7 0.05
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:76097577 original size:54 final size:54
Alignment explanation
Indices: 76097531--76097719 Score: 254
Period size: 54 Copynumber: 3.5 Consensus size: 54
76097521 GGGCAAAATG
* *
76097531 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* *
76097585 G-AATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGAGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
76097639 GTAATTCTACCCTACAGGGGTATTTAGGTAATTCTACCCTACAGGGTTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * *
76097693 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
76097720 ATACTTTACA
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 5 0.04
54 111 0.93
55 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (54 bp):
GTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:76097742 original size:26 final size:27
Alignment explanation
Indices: 76097712--76097784 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
76097702 CCCTATAGGG
* *
76097712 GTATTTCGATACTTT-ACAAATCGAGA
1 GTATTTCGATAATTTCACAAATCAAGA
* *
76097738 GTATTTTGATAATTTCACAAATCAAGC
1 GTATTTCGATAATTTCACAAATCAAGA
* * *
76097765 GTATTTTGGTAATTTTACAA
1 GTATTTCGATAATTTCACAA
76097785 GCCAGGGGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 13 0.32
27 27 0.68
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (27 bp):
GTATTTCGATAATTTCACAAATCAAGA
Found at i:76097768 original size:27 final size:27
Alignment explanation
Indices: 76097724--76097915 Score: 213
Period size: 27 Copynumber: 7.1 Consensus size: 27
76097714 ATTTCGATAC
* * * *
76097724 TTTACAAATCGAGAGTATTTTGATAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
* * *
76097751 TTCACAAATCAAGCGTATTTTGGTAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
* *
76097778 TTTACAAGCCAGGGGTATTTTGGTAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
* *
76097805 TTTACAAACCAGGGGTATTTTAGTAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
*
76097832 TTTACAAACCAGGGGTATTTTGGTAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
* * *
76097859 TTTACTAATCGAGGGTATTTTGGTAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
** **
76097886 TTTTTAAACCAAGGGTATTTCAGTAAT
1 TTTACAAACCAAGGGTATTTTGGTAAT
76097913 TTT
1 TTT
76097916 GTAAATCGAG
Statistics
Matches: 142, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TTTACAAACCAAGGGTATTTTGGTAAT
Found at i:76097839 original size:81 final size:81
Alignment explanation
Indices: 76097724--76097915 Score: 235
Period size: 81 Copynumber: 2.4 Consensus size: 81
76097714 ATTTCGATAC
* * * * *
76097724 TTTACAAATCGAGAGTATTTT-GATAATTTCACAAATCAAGCGTATTTTGGTAATTTTAC-AAGC
1 TTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACCAAGCGTATTTTGGTAATTTTACTAAGC
76097787 CAGGGGTATTTTGGTAAT
65 CA-GGGTATTTTGGTAAT
* * * * *
76097805 TTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAATCG
1 TTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGCGTATTTTGGTAATTTTACTAAGCC
76097870 AGGGTATTTTGGTAAT
66 AGGGTATTTTGGTAAT
** *
76097886 TTTTTAAACCAAGGGTATTTCAGTAATTTT
1 TTTACAAACCAAGGGTATTTTAGTAATTTT
76097916 GTAAATCGAG
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 90 0.95
82 5 0.05
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
TTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAAGCGTATTTTGGTAATTTTACTAAGCC
AGGGTATTTTGGTAAT
Found at i:76097938 original size:27 final size:27
Alignment explanation
Indices: 76097908--76098330 Score: 521
Period size: 27 Copynumber: 15.8 Consensus size: 27
76097898 GGGTATTTCA
* * *
76097908 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76097935 GTAATTCTATAAGTCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
76097962 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * **
76097989 GTAATTTTGTAAATTAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
76098016 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76098043 GTAATTTTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
76098070 GTAATTTTGTAAATCGAAGGTAAAGTA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76098097 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
76098124 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
76098151 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * **
76098178 GTAATTCTGTGAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
76098205 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
76098232 GTAATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76098259 GTAATTC----AATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
76098282 GTAATTCTATAAATCAAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76098309 GTAATTCTGTAAATCGATGGTA
1 GTAATTCTATAAATCGAGGGTA
76098331 CTTTGGTAAT
Statistics
Matches: 347, Mismatches: 45, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
23 22 0.06
27 325 0.94
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:76097938 original size:54 final size:54
Alignment explanation
Indices: 76097827--76098256 Score: 391
Period size: 54 Copynumber: 8.0 Consensus size: 54
76097817 GGGTATTTTA
* * *** * ***
76097827 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACT-AATCGAGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTAAAATGGTAATTCTA-TAAATCGAGGGTAAAATG
* ** * * * *
76097881 GTAATTTTTTAAACCAAGGGT-ATTTCAGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAACCAAGGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAATG
* * *
76097935 GTAATTCTATAAGTCGAA-GGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAA-ACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* **
76097989 GTAATTTTGTAAATTAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* * * * * *
76098043 GTAATTTTATAAATCGAA-GGTAAAATGGTAATTTTGTAAATCGAAGGTAAAGTA
1 GTAATTTTATAAA-CCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* * * * *
76098097 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* * * * * **
76098151 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTGAATCGAGGGTAAAACA
1 GTAATTTTATAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *** *
76098205 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAA
1 GTAATTTTATAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
76098257 CAGTAATTCA
Statistics
Matches: 315, Mismatches: 54, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
53 7 0.02
54 301 0.96
55 7 0.02
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (54 bp):
GTAATTTTATAAACCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
Found at i:76097938 original size:81 final size:79
Alignment explanation
Indices: 76097798--76098217 Score: 313
Period size: 81 Copynumber: 5.2 Consensus size: 79
76097788 AGGGGTATTT
* * ** * * *** *
76097798 TGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTATAAACCAAGGGTA-TTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
***
76097863 CTAATCGAGGGTATTT
65 -TAATCGAGGGTAAAA
* * *
76097879 TGGTAATTTTTTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTTTATAAACCAAGGGTATTT-AGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
*
76097944 TAAGTCGAAGGTAAAA
65 TAA-TCGAGGGTAAAA
* * * ** * *
76097960 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTATAAACCAAGGGT-ATTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
76098025 TAAATCGAGGGTAAAA
65 T-AATCGAGGGTAAAA
* ** * * *
76098041 TGGTAATTTTATAAATCGAA-GGTAAAATGGTAATTTTGTAAATCGAA-GGTAAAGTAGTAATTC
1 TGGTAATTTTATAAA-CCAAGGGT-ATTTAGTAATTTTGTAAATC-AAGGGTAAAATGGTAATTC
*
76098104 TGTAAATCGAGGGTAAAA
63 TAT-AATCGAGGGTAAAA
* * * * ** * * * * *
76098122 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTG
1 TGGTAATTTTATAAACCAAGGGT-ATTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
76098187 TGAATCGAGGGTAAAA
65 T-AATCGAGGGTAAAA
** *
76098203 CAGTAATTCTATAAA
1 TGGTAATTTTATAAA
76098218 TTGAGGGTAA
Statistics
Matches: 283, Mismatches: 48, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
80 8 0.03
81 268 0.95
82 7 0.02
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (79 bp):
TGGTAATTTTATAAACCAAGGGTATTTAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTAT
AATCGAGGGTAAAA
Found at i:76104978 original size:22 final size:23
Alignment explanation
Indices: 76104953--76104996 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
76104943 TAAGATATTG
76104953 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
76104975 AATTTTGATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
76104997 TTCCCACAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:76108702 original size:41 final size:42
Alignment explanation
Indices: 76108640--76108761 Score: 135
Period size: 41 Copynumber: 3.0 Consensus size: 42
76108630 AAAGCCATCG
* * *
76108640 GTGGATCCACGGTCGA-GAAGCAACCATGTGATCCTTAATTGA
1 GTGGATCCACGGTC-ATCAAGCAACCATGCGATCCTTAATTCA
*
76108682 -TGGATCCACGGTCATCAAGCAATCATGCGAT-CTTCAA-TCA
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTT-AATTCA
* * *
76108722 GTGGATCCACGGTCGTCAAGTAACCATGCGATCCTCAATT
1 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATT
76108762 TCTTCCTCCA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
40 6 0.09
41 58 0.87
42 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (42 bp):
GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATTCA
Found at i:76109048 original size:27 final size:27
Alignment explanation
Indices: 76109018--76109287 Score: 174
Period size: 27 Copynumber: 10.0 Consensus size: 27
76109008 GGTAAATCCA
* * *
76109018 CAAACCAAGGGTATTTCGGCAATTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* *
76109045 CAAACCAATGGTATTTCTGTAATTTTTG
1 CAAATCAAGGGTATTTCTGTAA-TTTTG
*
76109073 -AAAGTCAAGGGTATTTCTATAATTTTG
1 CAAA-TCAAGGGTATTTCTGTAATTTTG
* * *
76109100 TAAATCAGGGGTATTTTTGTAATTTCT-
1 CAAATCAAGGGTATTTCTGTAATTT-TG
*
76109127 CAAATCAAGGGTATTT-TGGTAATTTTC
1 CAAATCAAGGGTATTTCT-GTAATTTTG
** *
76109154 CAAATCTGGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* ** * *
76109181 TAAATTGAGGGTATTTCGGTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * ** **
76109208 CAAGTCGAGGGTATTTCAATAATTTCA
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * * *
76109235 CAGATTAGGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
76109262 CAAACCAAGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
76109288 TAAACCAATT
Statistics
Matches: 195, Mismatches: 39, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
26 12 0.06
27 159 0.82
28 24 0.12
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCTGTAATTTTG
Found at i:76109159 original size:54 final size:54
Alignment explanation
Indices: 76109018--76109285 Score: 195
Period size: 54 Copynumber: 5.0 Consensus size: 54
76109008 GGTAAATCCA
* * * * * ** *
76109018 CAAACCAAGGGTATTTCGGCAATTTTGCAAACCAATGGTATTTCTGTAATTTTT
1 CAAATCAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCTGTAATTTCT
* * ** *
76109072 GAAAGTCAAGGGTATTTCT-ATAATTTTGTAAATCAGGGGTATTTTTGTAATTTCT
1 CAAA-TCAAGGGTATTT-TGGTAATTTTACAAATCAGGGGTATTTCTGTAATTTCT
* *
76109127 CAAATCAAGGGTATTTTGGTAATTTTCCAAATCTGGGGTATTT-TGGTAATTT-T
1 CAAATCAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCT-GTAATTTCT
* ** * * ** *
76109180 ATAAATTGAGGGTATTTCGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTCA
1 -CAAATCAAGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTCTGTAATTTCT
* * * * * *
76109235 CAGATTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTA-TTCAGTAATTT
1 CAAATCAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCTGTAATTT
76109286 TGTAAACCAA
Statistics
Matches: 171, Mismatches: 34, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
53 14 0.08
54 115 0.67
55 42 0.25
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAATCAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCTGTAATTTCT
Found at i:76109334 original size:27 final size:27
Alignment explanation
Indices: 76109299--76109358 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
76109289 AAACCAATTT
* *
76109299 ATTTTAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
76109326 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
76109353 ATTTCA
1 ATTTCA
76109359 ACAATACTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:76109372 original size:27 final size:27
Alignment explanation
Indices: 76109315--76109372 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
76109305 GTAATTCTAT
** *
76109315 CCTACAGGGGCATTTCAGTAATTCTAC
1 CCTACAGGGGCATTTCAACAATACTAC
* *
76109342 CCTACAGGGGTATTTCAACAATACTAG
1 CCTACAGGGGCATTTCAACAATACTAC
76109369 CCTA
1 CCTA
76109373 TAGATATGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
CCTACAGGGGCATTTCAACAATACTAC
Found at i:76115524 original size:25 final size:25
Alignment explanation
Indices: 76115495--76115564 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
76115485 CAGGCCCATT
* *
76115495 TTCACAGCTCGTGTGCGCATTTTGA
1 TTCACAGCTCGTGTGAGCATTCTGA
*
76115520 TTCACAGCTCATGTGAGCATTCTGA
1 TTCACAGCTCGTGTGAGCATTCTGA
* *
76115545 TTCACAACTTGTGTGAGCAT
1 TTCACAGCTCGTGTGAGCAT
76115565 ACATGTACAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTCTGA
Found at i:76116231 original size:20 final size:19
Alignment explanation
Indices: 76116208--76116249 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
76116198 TAAAGAAAGT
76116208 AAAT-CAAACAGAAAGTAATG
1 AAATGCAAACA-AAAGTAA-G
*
76116228 AAATGCAAATAAAAGTAAG
1 AAATGCAAACAAAAGTAAG
76116247 AAA
1 AAA
76116250 ATTTGACAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 11 0.55
21 5 0.25
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (19 bp):
AAATGCAAACAAAAGTAAG
Found at i:76124938 original size:23 final size:26
Alignment explanation
Indices: 76124895--76124951 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
76124885 TTCTCTATAC
*
76124895 GAATTCTCTATAAAGACTTTGT-AGT
1 GAATTCTCTATAAAGAATTTGTAAGT
76124920 GAATTCTCTA-AAA-AATTTGTAAAGT
1 GAATTCTCTATAAAGAATTTGT-AAGT
76124945 GAATTCT
1 GAATTCT
76124952 ATAATGACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 6 0.21
24 3 0.10
25 20 0.69
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.39
Consensus pattern (26 bp):
GAATTCTCTATAAAGAATTTGTAAGT
Found at i:76127279 original size:24 final size:24
Alignment explanation
Indices: 76127239--76127320 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
76127229 CTGGAGGCCT
*
76127239 AGCCTCTTTTAAT-AACTAGGGCAA
1 AGCC-CTTTTGATAAACTAGGGCAA
76127263 AGCCCTTTTGATAAACTAGGGCAA
1 AGCCCTTTTGATAAACTAGGGCAA
* * * *
76127287 AGCCCTTCTCGGTAAACTGGGGCAT
1 AGCCCTT-TTGATAAACTAGGGCAA
76127312 AGCCCTTTT
1 AGCCCTTTT
76127321 ACCACTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.14
24 23 0.46
25 20 0.40
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTAGGGCAA
Found at i:76127309 original size:25 final size:24
Alignment explanation
Indices: 76127252--76127319 Score: 91
Period size: 25 Copynumber: 2.8 Consensus size: 24
76127242 CTCTTTTAAT
*
76127252 AACTAGGGCAAAGCCCTTTTGATA
1 AACTAGGGCAAAGCCCTTTCGATA
*
76127276 AACTAGGGCAAAGCCCTTCTCGGTA
1 AACTAGGGCAAAGCCCTT-TCGATA
* *
76127301 AACTGGGGCATAGCCCTTT
1 AACTAGGGCAAAGCCCTTT
76127320 TACCACTTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (24 bp):
AACTAGGGCAAAGCCCTTTCGATA
Found at i:76127573 original size:27 final size:26
Alignment explanation
Indices: 76127543--76127760 Score: 271
Period size: 27 Copynumber: 8.3 Consensus size: 26
76127533 ACACACAAGA
*
76127543 GTATCTCGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACA-GG
** *
76127570 GTATTTTAGT-ATTTTACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTAC-AGG
76127596 GTATTTCGGTAATTCTACCCTACAGG
1 GTATTTCGGTAATTCTACCCTACAGG
*
76127622 GTA-TTCAGTAATTCTA-CCTACAGG
1 GTATTTCGGTAATTCTACCCTACAGG
*
76127646 GTATTTCAGTAATTCTACCCTACAGG
1 GTATTTCGGTAATTCTACCCTACAGG
* *
76127672 GTATTTCGATAATTCTACCCTATAGGG
1 GTATTTCGGTAATTCTACCCTACA-GG
* **
76127699 GTAATTCGGTAATTCTACCCTGTAGGG
1 GTATTTCGGTAATTCTACCCTACA-GG
76127726 GTATTTCGGTAATTCTACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTAC-AGG
76127753 GTATTTCG
1 GTATTTCG
76127761 ATATTTTACA
Statistics
Matches: 168, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
24 11 0.07
25 25 0.15
26 56 0.33
27 75 0.45
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
GTATTTCGGTAATTCTACCCTACAGG
Found at i:76127691 original size:103 final size:107
Alignment explanation
Indices: 76127537--76127759 Score: 287
Period size: 103 Copynumber: 2.1 Consensus size: 107
76127527 ATTTTAACAC
* * * * * *
76127537 ACAAGAGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTATTTTACCCTACAAGGGTATTT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTGAGTATTCTACCCTACAAGGGTAATT
76127602 CGGTAATTCTACCCTACA-GGGTA-TTCAGTAATTCTA-CCT
66 CGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
76127641 AC-AGGGTATTTCAGTAATTCTACCCTACA-GGGTATTTCGA-TAATTCTACCCTATAGGGGTAA
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT-GAGT-ATTCTACCCTACAAGGGTAA
** *
76127703 TTCGGTAATTCTACCCTGTAGGGGTATTTCGGTAATTCTACCCT
64 TTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
76127747 ACAAGGGTATTTC
1 ACAAGGGTATTTC
76127760 GATATTTTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
102 9 0.09
103 59 0.58
104 7 0.07
105 12 0.12
106 5 0.05
107 10 0.10
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (107 bp):
ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTGAGTATTCTACCCTACAAGGGTAATT
CGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
Found at i:76127838 original size:27 final size:27
Alignment explanation
Indices: 76127779--76127928 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
76127769 CAAATTGAGA
* * *
76127779 GTATTTCGATAATTTCACAAA-CAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
76127805 GTATTTTGGTAATTTTACAAGCTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* **
76127832 ATATTTTGGTAATTTTACAAACCAGAC
1 GTATTTTGGTAATTTTACAAACCAGGG
*
76127859 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
76127886 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
76127913 GTATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
76127929 GTAAATCGGG
Statistics
Matches: 104, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 17 0.16
27 87 0.84
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:76127978 original size:81 final size:81
Alignment explanation
Indices: 76127910--76128102 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 81
76127900 TTGTAAACCA
* * * * * *
76127910 AGGGTATTTTAGTAATTTTGTAAATCGGGGGTAAAATGGAAATTCT-ATAAATCGATGGTAAAAC
1 AGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGAAACTCTGA-AAATCGAGGGTAAAAC
76127974 GGTAATTCTATAAATCG
65 GGTAATTCTATAAATCG
** * * *
76127991 AGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAATGGTAACTCTGAAAATCGAGGGTAAAACG
1 AGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGAAACTCTGAAAATCGAGGGTAAAACG
76128056 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
* * *
76128072 AGGGTACTTTGGTAATTTTACAAATTGAGGG
1 AGGGTAATTTGGTAATTTTATAAATCGAGGG
76128103 CATTTTAGTA
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 92 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGAAACTCTGAAAATCGAGGGTAAAACG
GTAATTCTATAAATCG
Found at i:76128088 original size:27 final size:27
Alignment explanation
Indices: 76127921--76128077 Score: 217
Period size: 27 Copynumber: 5.8 Consensus size: 27
76127911 GGGTATTTTA
* * *
76127921 GTAATTTTGTAAATCGGGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
76127948 GAAATTCTATAAATCGATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
76127975 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
76128002 GTAACTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76128029 GTAACTCTGA-AAATCGAGGGTAAAACG
1 GTAATTCT-ATAAATCGAGGGTAAAATG
76128056 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
76128078 CTTTGGTAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 114 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:76128096 original size:27 final size:27
Alignment explanation
Indices: 76127750--76128116 Score: 145
Period size: 27 Copynumber: 13.7 Consensus size: 27
76127740 CTACCCTACA
* * *
76127750 AGGGTATTTCGAT-ATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
76127776 AGAGTATTTCGATAATTTCACAAA-C-
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
76127801 AGGGGTATTTTGGTAATTTTAC-AAGCT
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
76127828 AGGGATATTTTGGTAATTTTACAAA-CC
1 AGGG-TATTTTGGTAATTTTACAAATCG
* * *
76127855 AGACGTATTTTAGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTACAAATCG
** * *
76127882 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
* **
76127910 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *** * * *
76127937 GGGGTAAAATGGAAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* **** * *
76127964 ATGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * * *
76127991 AGGGTAAAATGGTAACTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * *
76128018 AGGGTAAAATGGTAACTCTGA-AAATCG
1 AGGGTATTTTGGTAA-TTTTACAAATCG
**** * *
76128045 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
76128072 AGGGTACTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
76128099 AGGGCATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
76128117 GGTAAACTAA
Statistics
Matches: 279, Mismatches: 51, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.01
26 34 0.12
27 235 0.84
28 7 0.03
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.35
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:76128102 original size:54 final size:54
Alignment explanation
Indices: 76127921--76128102 Score: 213
Period size: 54 Copynumber: 3.4 Consensus size: 54
76127911 GGGTATTTTA
* * * * *
76127921 GTAATTTTGTAAATCGGGGGTAAAATGGAAATTCTATAAATCGATGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *
76127975 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* * * ***
76128029 GTAACTCTGA-AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTG
1 GTAA-TTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *
76128083 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
76128103 CATTTTAGTA
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.03
54 103 0.95
55 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
Found at i:76130745 original size:27 final size:27
Alignment explanation
Indices: 76130717--76130853 Score: 220
Period size: 27 Copynumber: 5.1 Consensus size: 27
76130707 GGCAAAATGG
* * * * *
76130717 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
76130744 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
76130771 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
76130798 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
76130825 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
76130852 TA
1 TA
76130854 TTTTACAAAT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:76130910 original size:53 final size:53
Alignment explanation
Indices: 76130811--76130990 Score: 141
Period size: 54 Copynumber: 3.4 Consensus size: 53
76130801 TTCTACCCTA
* ** * * **
76130811 CAGGGGTATTTCGATAA-TTCTACCCTACAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGAGTATTTCGATAATTTC-ACAAT-CAGGGGTATTTTGGTAATTTTACAAGC
76130864 C-GAGAGTATTTCGATAATTTCACAATCAGGGGTATTTTGGTAATTTTACAAGC
1 CAG-GAGTATTTCGATAATTTCACAATCAGGGGTATTTTGGTAATTTTACAAGC
* * * * * * * *
76130917 CAGGAGTATTTTGGTAATTTTACAAACCAGTGGTATTTTAGTAATTTTATAAAC
1 CAGGAGTATTTCGATAATTTCAC-AATCAGGGGTATTTTGGTAATTTTACAAGC
* * *
76130971 CAGGGGTATTTTGGTAATTT
1 CAGGAGTATTTCGATAATTT
76130991 TGTAAACCAA
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
52 14 0.13
53 44 0.42
54 48 0.45
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (53 bp):
CAGGAGTATTTCGATAATTTCACAATCAGGGGTATTTTGGTAATTTTACAAGC
Found at i:76130927 original size:27 final size:27
Alignment explanation
Indices: 76130853--76131018 Score: 151
Period size: 27 Copynumber: 6.2 Consensus size: 27
76130843 GTATTTCGAT
* * *
76130853 ATTTTACAAATC-GAGAGTATTTCGATA
1 ATTTTACAAACCAG-GAGTATTTTGGTA
* * *
76130880 ATTTCAC-AATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGAGTATTTTGGTA
*
76130906 ATTTTACAAGCCAGGAGTATTTTGGTA
1 ATTTTACAAACCAGGAGTATTTTGGTA
*
76130933 ATTTTACAAACCAGTG-GTATTTTAGTA
1 ATTTTACAAACCAG-GAGTATTTTGGTA
* *
76130960 ATTTTATAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGAGTATTTTGGTA
** **
76130987 ATTTTGTAAACCAAGG-GTATTTCAGTA
1 ATTTTACAAACC-AGGAGTATTTTGGTA
76131014 ATTTT
1 ATTTT
76131019 GTAAATCGAG
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.18
27 94 0.79
28 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTTTACAAACCAGGAGTATTTTGGTA
Found at i:76130974 original size:54 final size:53
Alignment explanation
Indices: 76130867--76131023 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 53
76130857 TACAAATCGA
* * * * * * *
76130867 GAGTATTTCGATAATTTCAC-AATCAGGGGTATTTTGGTAATTTTACAAGCCAG
1 GAGTATTTTGGTAATTTTACAAACCA-GGGTATTTTAGTAATTTTATAAACCAG
76130920 GAGTATTTTGGTAATTTTACAAACCAGTGGTATTTTAGTAATTTTATAAACCAG
1 GAGTATTTTGGTAATTTTACAAACCAG-GGTATTTTAGTAATTTTATAAACCAG
* ** * *
76130974 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAA
1 GAGTATTTTGGTAATTTTACAAACC-AGGGTATTTTAGTAATTTTATAAA
76131024 TCGAGGGTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
53 18 0.20
54 69 0.78
55 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GAGTATTTTGGTAATTTTACAAACCAGGGTATTTTAGTAATTTTATAAACCAG
Found at i:76131070 original size:81 final size:81
Alignment explanation
Indices: 76130993--76131167 Score: 199
Period size: 81 Copynumber: 2.2 Consensus size: 81
76130983 GGTAATTTTG
** * * * *
76130993 TAAACCAAGGGT-ATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAAG
1 TAAACCAAGGGTAAAAT-AGTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAAG
76131057 GAAAAACGATAATTCTA
65 GAAAAACGATAATTCTA
*** * *
76131074 TAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGG
1 TAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAAGG
* *
76131139 TAAAACGGTAATTCTA
66 AAAAACGATAATTCTA
* *
76131155 TAAATCGAGGGTA
1 TAAACCAAGGGTA
76131168 CTTTGGTAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 77 0.97
82 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
TAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAAGG
AAAAACGATAATTCTA
Found at i:76131178 original size:27 final size:27
Alignment explanation
Indices: 76131011--76131167 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
76131001 GGGTATTTCA
* *
76131011 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
76131038 GTAATTTTGTAAATCGAAGGAAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
76131065 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
76131092 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
76131119 GTAACTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
76131146 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
76131168 CTTTGGTAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:76131178 original size:81 final size:81
Alignment explanation
Indices: 76131011--76131167 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
76131001 GGGTATTTCA
* * * *
76131011 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAAGGAAAAACGATAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAAGGAAAAACGATAATTCTATA
*
76131076 AATTGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * *
76131092 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAAGGAAAAACGATAATTCTATA
76131157 AATCGAGGGTA
66 AATCGAGGGTA
76131168 CTTTGGTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAACTCTGTAAATCGAAGGAAAAACGATAATTCTATA
AATCGAGGGTAAAATG
Found at i:76131186 original size:27 final size:27
Alignment explanation
Indices: 76130893--76131186 Score: 155
Period size: 27 Copynumber: 10.9 Consensus size: 27
76130883 TCACAATCAG
* * * *
76130893 GGGTATTTTGGTAATTTTA-CAAGCCA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * *
76130919 GGAGTATTTTGGTAATTTTACAAA-CCA
1 GG-GTAATTTGGTAATTTTATAAATCGA
* * *
76130946 GTGGTATTTTAGTAATTTTATAAA-CCA
1 G-GGTAATTTGGTAATTTTATAAATCGA
* * * *
76130973 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTAATTTGGTAATTTTATAAATCGA
* *
76131001 GGGT-ATTTCAGTAATTTTGTAAATCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
** *
76131028 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
* * *** * * *
76131055 AGGAAAAACGATAATTCTATAAATTGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** *
76131082 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * * *
76131109 GGGTAAAATGGTAACTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
*** *
76131136 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
* *
76131163 GGGTACTTTGGTAATTTTACAAAT
1 GGGTAATTTGGTAATTTTATAAAT
76131187 TAAGGGCATT
Statistics
Matches: 225, Mismatches: 36, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.02
27 212 0.94
28 8 0.04
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTATAAATCGA
Found at i:76133567 original size:25 final size:25
Alignment explanation
Indices: 76133533--76133602 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
76133523 CTCTTTTAAT
*
76133533 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
76133558 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
76133583 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76133603 ACCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:76133834 original size:27 final size:27
Alignment explanation
Indices: 76133804--76133939 Score: 209
Period size: 27 Copynumber: 5.0 Consensus size: 27
76133794 GGGGCAAAAT
* * * *
76133804 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
76133831 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
76133858 GGTATTTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
76133885 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
76133912 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
76133939 G
1 G
76133940 ATATTTCACA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Done.