Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 247 of 318
Found at i:78556248 original size:40 final size:39
Alignment explanation
Indices: 78556204--78556375 Score: 177
Period size: 40 Copynumber: 4.3 Consensus size: 39
78556194 GGACTAAGAT
* *
78556204 CCGAAGGCATTTGTGCGAGATACAAATTCGGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
78556244 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * * * *
78556284 CCGAAGGCATTCGTGTGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * *
78556324 CCGAAGGCATTATGT--GAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATT-TGTGCGAGATAC-AAATCCGGGTTAAGTC
78556363 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78556376 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.27
40 77 0.67
41 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:78556355 original size:39 final size:40
Alignment explanation
Indices: 78556264--78556373 Score: 168
Period size: 39 Copynumber: 2.8 Consensus size: 40
78556254 TTGTGCGAGA
* *
78556264 TACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGT
1 TACTAAATCCGGGTTATGTCCCGAAGGCATTCATGTGAGT
*
78556304 TATTAAATCCGGGTTATGTCCCGAAGGCATT-ATGTGAGT
1 TACTAAATCCGGGTTATGTCCCGAAGGCATTCATGTGAGT
* *
78556343 TACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TACTAAATCCGGGTTATGTCCCGAAGGCATT
78556374 TGAACGAGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
39 35 0.55
40 29 0.45
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (40 bp):
TACTAAATCCGGGTTATGTCCCGAAGGCATTCATGTGAGT
Found at i:78574992 original size:48 final size:49
Alignment explanation
Indices: 78574864--78575242 Score: 517
Period size: 47 Copynumber: 8.1 Consensus size: 49
78574854 GAAATGACAG
*
78574864 TAAGGCCTAATGGCCGATG-GATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78574910 TAAGGCCT-ATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78574958 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATA--TGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78575004 TAA-G-C-AATGGCCGATG-GATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
78575051 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78575099 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78575145 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
78575192 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78575239 TAAG
1 TAAG
78575243 TCCCGAAGGG
Statistics
Matches: 303, Mismatches: 14, Indels: 31
0.87 0.04 0.09
Matches are distributed among these distances:
42 10 0.03
43 16 0.05
44 1 0.00
45 18 0.06
46 43 0.14
47 85 0.28
48 81 0.27
49 33 0.11
50 16 0.05
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:78575429 original size:36 final size:37
Alignment explanation
Indices: 78575361--78575438 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
78575351 CCGAGCTCTA
* * *
78575361 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78575398 AAGACCCGCTAACT-CGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78575434 AAGAC
1 AAGAC
78575439 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 25 0.68
37 12 0.32
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78577363 original size:29 final size:29
Alignment explanation
Indices: 78577328--78577401 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
78577318 GTTGTGAGAT
78577328 TGGCACTAAGTGTGC-AGGCTTGAAATG-CA
1 TGGCACTAAGTGTGCGA-GCTTGAAA-GACA
* *
78577357 TGGCACTAAGTGTGCGAGTTTTAAAGACA
1 TGGCACTAAGTGTGCGAGCTTGAAAGACA
78577386 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78577402 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 1 0.02
29 39 0.95
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAAGACA
Found at i:78577841 original size:39 final size:39
Alignment explanation
Indices: 78577754--78577857 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 39
78577744 AAGTGACCTT
*
78577754 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGG-CTAAG-TCCCGAAGGCATTGGTGCGAGATACTAA
* *
78577794 TTCCGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAA
78577832 ATCCAGGCTAAGTCCCGAAGAGCATT
1 ATCC-GGCTAAGTCCCGAAG-GCATT
78577858 CATGCTAGTG
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
38 27 0.48
39 12 0.21
40 12 0.21
41 5 0.09
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATCCGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAA
Found at i:78577877 original size:78 final size:78
Alignment explanation
Indices: 78577798--78577979 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 78
78577788 TACTAATTCC
** *
78577798 GGCTAAGCCCGAAG-GCATTGGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGAGCATTCATG
1 GGCTAAGCCCGAAGAGCATTCATGC-AGTGA-TAAATCCAGGCTAAGTCCCGAAGAGCATTCATG
*
78577862 CTAGTGATGTATCCG
64 CTAGTGATATATCCG
* ** * * *
78577877 GGCTAAGTCCGAAGAGCATTCATGCAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 GGCTAAGCCCGAAGAGCATTCATGCAGTGATAAATCCAGGCTAAGTCCCGAAGAGCATTCATGCT
* *
78577942 GGTGTTATATCCG
66 AGTGATATATCCG
*
78577955 GGCTAGGTCCCGAAGAGCA-TCATGC
1 GGCTAAG-CCCGAAGAGCATTCATGC
78577980 TGGTGACGTG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 52 0.60
79 27 0.31
80 8 0.09
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (78 bp):
GGCTAAGCCCGAAGAGCATTCATGCAGTGATAAATCCAGGCTAAGTCCCGAAGAGCATTCATGCT
AGTGATATATCCG
Found at i:78577894 original size:39 final size:40
Alignment explanation
Indices: 78577832--78577985 Score: 215
Period size: 39 Copynumber: 3.9 Consensus size: 40
78577822 GAGTTACTAA
*
78577832 ATCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
78577872 ATCCGGGCTAAGT-CCGAAGAGCATTCATGC-AGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
78577910 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
78577950 ATCCGGGCTAGGTCCCGAAGAGCA-TCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
78577986 CGTGTATTCA
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 21 0.20
39 43 0.42
40 39 0.38
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:78581218 original size:96 final size:96
Alignment explanation
Indices: 78581054--78581445 Score: 608
Period size: 96 Copynumber: 4.0 Consensus size: 96
78581044 GAAATGACAG
78581054 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
78581119 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
78581150 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
78581215 ATGTGATGAATGTGAAAGTGTATATATATATGTGA
66 ATGTGATGAATGTGAAAGTG----TATATATGTGA
*
78581250 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATCTATATGTGATAGGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--TATATGTGATAAGGCCTAATGGC
78581315 CGATGTGATGAATGTGAAAGTGTATATATGTGA
64 CGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
78581348 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGACA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
78581411 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
78581442 TAAG
1 TAAG
78581446 TCCCGAAGGG
Statistics
Matches: 279, Mismatches: 11, Indels: 14
0.92 0.04 0.05
Matches are distributed among these distances:
94 52 0.19
96 87 0.31
98 46 0.16
100 50 0.18
102 44 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78581262 original size:51 final size:49
Alignment explanation
Indices: 78581054--78581445 Score: 593
Period size: 47 Copynumber: 8.1 Consensus size: 49
78581044 GAAATGACAG
78581054 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78581103 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78581150 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78581199 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
78581250 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATCTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--TATATGTGA
*
78581301 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78581348 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
78581395 CAGGGCCGAGTGGACAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78581442 TAAG
1 TAAG
78581446 TCCCGAAGGG
Statistics
Matches: 319, Mismatches: 16, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
47 135 0.42
48 1 0.00
49 90 0.28
51 93 0.29
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:78581605 original size:37 final size:37
Alignment explanation
Indices: 78581563--78581641 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
78581553 CCGAGCTCTA
* * *
78581563 AAGACCCGATGACTACGTGTGGGGATTTTATCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
* * *
78581600 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGTGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
78581637 AAGAC
1 AAGAC
78581642 TTCGTAAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
Found at i:78583196 original size:34 final size:33
Alignment explanation
Indices: 78583158--78583225 Score: 77
Period size: 34 Copynumber: 2.0 Consensus size: 33
78583148 CTAGCCCATG
78583158 TTTCAATT-TGGAAA-TTGATGATGATTTTGTGTTT
1 TTTC-ATTGTGGAAACTTGATGAT--TTTTGTGTTT
*
78583192 TTTCATTGTTGAAAGCTTGATGATTTTTGTGTTT
1 TTTCATTGTGGAAA-CTTGATGATTTTTGTGTTT
78583226 GATGATGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
33 3 0.10
34 19 0.63
36 8 0.27
ACGTcount: A:0.21, C:0.04, G:0.21, T:0.54
Consensus pattern (33 bp):
TTTCATTGTGGAAACTTGATGATTTTTGTGTTT
Found at i:78587127 original size:40 final size:40
Alignment explanation
Indices: 78587082--78587273 Score: 222
Period size: 40 Copynumber: 4.8 Consensus size: 40
78587072 TATAACCACA
** *
78587082 AGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
78587122 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
78587162 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * *
78587202 CGCACAAATGCCTTCGGGTCTTAGCCCAGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
78587242 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
78587274 TCATTCAAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:78587202 original size:80 final size:79
Alignment explanation
Indices: 78587054--78587274 Score: 309
Period size: 80 Copynumber: 2.8 Consensus size: 79
78587044 ACCCAAGTTT
* * * * * *
78587054 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
78587118 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
78587133 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
78587198 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * *
78587213 CTTCGGGTCTTAGCCCAGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
78587275 CATTCAAATG
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 114 0.90
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:78596386 original size:20 final size:20
Alignment explanation
Indices: 78596363--78596429 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
78596353 GCAACTTGTT
*
78596363 TGCATTACTAGCAGTTTATC
1 TGCATTACTGGCAGTTTATC
* * *
78596383 TGCATTACTGGCAGCTTGTT
1 TGCATTACTGGCAGTTTATC
78596403 TGC-TCTACTGGCAGTTTATC
1 TGCAT-TACTGGCAGTTTATC
78596423 TGCATTA
1 TGCATTA
78596430 TTGGTGAGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 1 0.03
20 36 0.95
21 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (20 bp):
TGCATTACTGGCAGTTTATC
Found at i:78596417 original size:40 final size:40
Alignment explanation
Indices: 78596346--78596429 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
78596336 GCATGTCCAT
*
78596346 ATTATTGGCAACTTGTTTGCATTACTAGCAGTTTATCTGC
1 ATTACTGGCAACTTGTTTGCATTACTAGCAGTTTATCTGC
* *
78596386 ATTACTGGCAGCTTGTTTGC-TCTACTGGCAGTTTATCTGC
1 ATTACTGGCAACTTGTTTGCAT-TACTAGCAGTTTATCTGC
78596426 ATTA
1 ATTA
78596430 TTGGTGAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (40 bp):
ATTACTGGCAACTTGTTTGCATTACTAGCAGTTTATCTGC
Found at i:78600728 original size:6 final size:6
Alignment explanation
Indices: 78600710--78600743 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
78600700 TGCAAATGAA
*
78600710 TCATTT CTCATTT TCATTT TCATTT CCATTT TCA
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCA
78600744 GAAAACCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
TCATTT
Found at i:78604511 original size:14 final size:14
Alignment explanation
Indices: 78604492--78604519 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
78604482 CTTTGTATAC
78604492 CTTACCATACAAGA
1 CTTACCATACAAGA
78604506 CTTACCATACAAGA
1 CTTACCATACAAGA
78604520 GAGCCAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
CTTACCATACAAGA
Found at i:78612860 original size:14 final size:14
Alignment explanation
Indices: 78612841--78612874 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
78612831 ATAACAGTTG
78612841 ACCTCAAGAATTCA
1 ACCTCAAGAATTCA
78612855 ACCTCAAGAATTCA
1 ACCTCAAGAATTCA
78612869 ACCTCA
1 ACCTCA
78612875 TATTCTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.41, C:0.32, G:0.06, T:0.21
Consensus pattern (14 bp):
ACCTCAAGAATTCA
Found at i:78614661 original size:34 final size:34
Alignment explanation
Indices: 78614574--78614649 Score: 102
Period size: 34 Copynumber: 2.2 Consensus size: 34
78614564 GATCAATACG
* *
78614574 ATAGCAATTAATATGCTTATAATAATTCGATATA
1 ATAGCAAATAATATGCTTATAACAATTCGATATA
78614608 ATAGCAAATAATATGCTTATAACAGA-TCGAT-TCA
1 ATAGCAAATAATATGCTTATAACA-ATTCGATAT-A
78614642 ATAGCAAA
1 ATAGCAAA
78614650 AGTTATGCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 1 0.03
34 36 0.95
35 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.32
Consensus pattern (34 bp):
ATAGCAAATAATATGCTTATAACAATTCGATATA
Found at i:78615313 original size:22 final size:20
Alignment explanation
Indices: 78615281--78615320 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
78615271 TAGAATTGCA
78615281 TGACTTTTAGGATGAGATCC
1 TGACTTTTAGGATGAGATCC
*
78615301 TGACATTTCTAGGTTGAGAT
1 TGAC-TTT-TAGGATGAGAT
78615321 GTCTTCATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 3 0.18
22 10 0.59
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (20 bp):
TGACTTTTAGGATGAGATCC
Found at i:78619015 original size:21 final size:21
Alignment explanation
Indices: 78618989--78619044 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
78618979 TATATGGCAT
78618989 ATTAAAAAATA-AATTAAAAA
1 ATTAAAAAATATAATTAAAAA
**
78619009 ATATAAAAAATATTTTTAAAAA
1 AT-TAAAAAATATAATTAAAAA
78619031 ATTAAAATAATATA
1 ATTAAAA-AATATA
78619045 TATAAAGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 14 0.47
22 14 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTAAAAAATATAATTAAAAA
Found at i:78619050 original size:22 final size:20
Alignment explanation
Indices: 78618989--78619050 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 20
78618979 TATATGGCAT
*
78618989 ATTAAAAAATAAATTAAAAA
1 ATTAAAAAATATATTAAAAA
*
78619009 ATATAAAAAATATTTTTAAAAA
1 AT-TAAAAAATA-TATTAAAAA
78619031 ATTAAAATAATATATATAAA
1 ATTAAAA-AATATAT-TAAA
78619051 GTTCATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 16 0.46
22 17 0.49
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATTAAAAAATATATTAAAAA
Found at i:78619602 original size:21 final size:21
Alignment explanation
Indices: 78619536--78619609 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
78619526 GGTTTCTTGG
78619536 TTTAGGGTTTTGTTAAAATAA
1 TTTAGGGTTTTGTTAAAATAA
* ** *** ***
78619557 TTTAAGGTTAGGTTTGTAGGG
1 TTTAGGGTTTTGTTAAAATAA
78619578 TTTAGGGTTTTGTTAAAATAA
1 TTTAGGGTTTTGTTAAAATAA
*
78619599 TTTAGAGTTTT
1 TTTAGGGTTTT
78619610 AGATTTTAGA
Statistics
Matches: 34, Mismatches: 19, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (21 bp):
TTTAGGGTTTTGTTAAAATAA
Found at i:78619703 original size:34 final size:33
Alignment explanation
Indices: 78619658--78619749 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 33
78619648 GTTCTTTTTT
78619658 AAAAATTAATTAAATTATGGTTTAG-GGGTTTAA
1 AAAAATTAATTAAATT-TGGTTTAGTGGGTTTAA
**
78619691 AATAAATTAATTAAATTTGGGTTTAGTGTTTTTAA
1 AA-AAATTAATTAAATTT-GGTTTAGTGGGTTTAA
*
78619726 GAAAATTAATTAAATTTGGATTTA
1 AAAAATTAATTAAATTTGG-TTTA
78619750 ATTTTTTTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
33 5 0.10
34 40 0.77
35 7 0.13
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.43
Consensus pattern (33 bp):
AAAAATTAATTAAATTTGGTTTAGTGGGTTTAA
Found at i:78620265 original size:126 final size:126
Alignment explanation
Indices: 78620041--78620468 Score: 682
Period size: 126 Copynumber: 3.4 Consensus size: 126
78620031 TGCACGCAAA
* * * *
78620041 ATGCACTATCTGCAAAATTGAT-AAAAAAGCTCACACGTAGACGCTCTTTTTCTACAGTAGTTCC
1 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
78620105 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGG
66 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGG
78620166 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
1 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
*
78620231 TGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCAAAAACGCTTCAAGCAGG
66 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGG
*
78620292 ATGCACTATCAGCAAAGTTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
1 ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
* * * * * * *
78620357 TAAAAAAATAATTTTAAGAAGATGTTTTTGAACAAATAGTGTCAAAAATGCTTCAAGTAGG
66 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGG
* *
78620418 ATGCACTATCAGCAAAATT-ACTGCAAAAAGCTC-TCACGTGGACGCTCTTTT
1 ATGCACTATCAGCAAAATTGA-TGAAAAAAGCTCAT-ACATGGACGCTCTTTT
78620469 CAATAGTAGT
Statistics
Matches: 283, Mismatches: 17, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
125 23 0.08
126 260 0.92
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (126 bp):
ATGCACTATCAGCAAAATTGATGAAAAAAGCTCATACATGGACGCTCTTTTTCTACAGTAGTTCC
TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGG
Found at i:78620403 original size:252 final size:256
Alignment explanation
Indices: 78619824--78620468 Score: 854
Period size: 252 Copynumber: 2.5 Consensus size: 256
78619814 GATTTTGGTT
* * * *
78619824 TTTTTTTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATGGTTCTGAACAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
* * * * *
78619889 ACGCTTCAAGTAGGTTGCACTGTCAACAAAATTACTGAAAAAAAGCTCTCAGATGGACACTCTTT
66 ACGCTTCAAGTAGGATGCACTATCAGCAAAATTACTG-AAAAAAGCTCTCACATGGACGCTCTTT
* * ** *
78619954 TTCTAGAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTGAACAAATGGTGTCAAAAATA
130 TTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTAAACAAATAATGTCAAAAACA
* *
78620019 CTTAAAGCAGAATGCACGCAAAATGCACTATCTGCAAAATTGATAAAAAAGCTCACACGTAGACG
195 CTT--A-CA-AATGCACG--AAATGCACTATCAGCAAAATTGATAAAAAAGCTCACACATAGACG
78620084 CTC
254 CTC
* *
78620087 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
*
78620152 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTGA-TGAAAAAAGCTCAT-ACATGGACGCTCTT
66 ACGCTTCAAGTAGGATGCACTATCAGCAAAATT-ACTGAAAAAAGCTC-TCACATGGACGCTCTT
* **
78620215 TTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCAAAAAC
129 TTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTAAACAAATAATGTCAAAAAC
* * * * *
78620280 GCTT-C-AA-GCA-G-GATGCACTATCAGCAAAGTTGATGAAAAAAGCTCATACATGGACGCTC
194 ACTTACAAATGCACGAAATGCACTATCAGCAAAATTGAT-AAAAAAGCTCACACATAGACGCTC
* * *
78620339 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTAAGAAGATGTTTTTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
* * *
78620404 ATGCTTCAAGTAGGATGCACTATCAGCAAAATTACTGCAAAAAGCTCTCACGTGGACGCTCTTTT
66 ACGCTTCAAGTAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCTCACATGGACGCTCTTTT
78620469 CAATAGTAGT
Statistics
Matches: 341, Mismatches: 36, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
251 22 0.06
252 138 0.40
254 1 0.00
255 3 0.01
256 2 0.01
258 1 0.00
262 82 0.24
263 91 0.27
264 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (256 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAA
ACGCTTCAAGTAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCTCACATGGACGCTCTTTT
TCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACAATTCTAAACAAATAATGTCAAAAACAC
TTACAAATGCACGAAATGCACTATCAGCAAAATTGATAAAAAAGCTCACACATAGACGCTC
Found at i:78623557 original size:24 final size:24
Alignment explanation
Indices: 78623525--78623603 Score: 149
Period size: 24 Copynumber: 3.3 Consensus size: 24
78623515 GTTGCATTAT
*
78623525 TTCTATTGCCTTACTCAAAAGAAC
1 TTCTATTGCCTTATTCAAAAGAAC
78623549 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATTGCCTTATTCAAAAGAAC
78623573 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATTGCCTTATTCAAAAGAAC
78623597 TTCTATT
1 TTCTATT
78623604 TTATTAAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (24 bp):
TTCTATTGCCTTATTCAAAAGAAC
Found at i:78623613 original size:21 final size:22
Alignment explanation
Indices: 78623525--78623613 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 22
78623515 GTTGCATTAT
*
78623525 TTCTATTGCCTTACTCAAAAGAAC
1 TTCTATT--CTTATTCAAAAGAAC
78623549 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATT--CTTATTCAAAAGAAC
78623573 TTCTATTGCCTTATTCAAAAGAAC
1 TTCTATT--CTTATTCAAAAGAAC
*
78623597 TTCTATT-TTATTAAAAA
1 TTCTATTCTTATTCAAAA
78623614 TATAAAACTA
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
21 9 0.14
24 54 0.86
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (22 bp):
TTCTATTCTTATTCAAAAGAAC
Found at i:78629356 original size:28 final size:28
Alignment explanation
Indices: 78629308--78629362 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
78629298 TTATTAACCC
78629308 CATAAGTTATAAAACTCTTCCTATACCT
1 CATAAGTTATAAAACTCTTCCTATACCT
* * *
78629336 CATAAGTTATGAGACTTTTCCTATACC
1 CATAAGTTATAAAACTCTTCCTATACC
78629363 CCATTAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (28 bp):
CATAAGTTATAAAACTCTTCCTATACCT
Found at i:78635543 original size:47 final size:47
Alignment explanation
Indices: 78635472--78635688 Score: 407
Period size: 47 Copynumber: 4.6 Consensus size: 47
78635462 GAAATGATAG
*
78635472 TAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
78635519 TAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78635566 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78635613 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78635660 TAAGGCCTAATGGCCGATGTGATGAATGT
1 TAAGGCCTAATGGCCGATGTGATGAATGT
78635689 AAACGAACCT
Statistics
Matches: 165, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 165 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78636823 original size:29 final size:29
Alignment explanation
Indices: 78636788--78636861 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
78636778 GTTGTGAGAT
* *
78636788 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
78636817 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
78636846 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
78636862 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:78637297 original size:40 final size:40
Alignment explanation
Indices: 78637174--78637369 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
78637164 TCGAATGATG
** *
78637174 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
78637214 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
78637254 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
78637294 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
78637334 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
78637370 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:78637310 original size:80 final size:81
Alignment explanation
Indices: 78637174--78637370 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
78637164 TCGAATGATG
**
78637174 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
78637236 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
78637254 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
78637318 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
78637334 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
78637371 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:78640841 original size:47 final size:47
Alignment explanation
Indices: 78640770--78641243 Score: 777
Period size: 47 Copynumber: 10.1 Consensus size: 47
78640760 GAAATGATAG
*
78640770 TAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78640817 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78640864 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78640911 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78640958 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78641005 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
78641052 TAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78641099 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78641146 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
78641193 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78641240 TAAG
1 TAAG
78641244 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 397 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78641418 original size:37 final size:37
Alignment explanation
Indices: 78641362--78641440 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
78641352 CCGAGCTCTA
* *
78641362 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
78641399 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78641436 AAGAC
1 AAGAC
78641441 TTCATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78644344 original size:28 final size:28
Alignment explanation
Indices: 78644304--78644366 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
78644294 GTCATTATCA
*
78644304 ACCCCATAAGTTATAAAACTCTTCTTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
78644332 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
78644360 ACCCCAT
1 ACCCCAT
78644367 TAATATGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:78645408 original size:46 final size:46
Alignment explanation
Indices: 78645313--78645409 Score: 106
Period size: 46 Copynumber: 2.1 Consensus size: 46
78645303 ACAAATTAAT
* * **
78645313 AATATTATCCAATTGCATAATTAGTAGTACACCACATGATAATTAC
1 AATATTATCCAAGTGCATAACTAGTAGTACACCACATGATAAGCAC
* * * *
78645359 AATATTGTCCAAGTGCATTACTAGTATTACACCACATTA-AAGCATC
1 AATATTATCCAAGTGCATAACTAGTAGTACACCACATGATAAGCA-C
78645405 AATAT
1 AATAT
78645410 CTTCAACCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 3 0.07
46 39 0.93
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (46 bp):
AATATTATCCAAGTGCATAACTAGTAGTACACCACATGATAAGCAC
Found at i:78661427 original size:20 final size:20
Alignment explanation
Indices: 78661402--78661441 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
78661392 AAAAAGAGGT
78661402 TTTCTCTTAAAGTTTTGCTA
1 TTTCTCTTAAAGTTTTGCTA
78661422 TTTCTCTTAAAGTTTTGCTA
1 TTTCTCTTAAAGTTTTGCTA
78661442 AGTGTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (20 bp):
TTTCTCTTAAAGTTTTGCTA
Found at i:78670074 original size:2 final size:2
Alignment explanation
Indices: 78670069--78670093 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
78670059 AAAAAAAAAA
78670069 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
78670094 AAGAGGAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78671253 original size:23 final size:22
Alignment explanation
Indices: 78671217--78671262 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
78671207 ACTTGAATTA
*
78671217 TTTAAAATATAAATATTATATT
1 TTTAAAAAATAAATATTATATT
78671239 TTTAAAGAAATAAATATTATATT
1 TTTAAA-AAATAAATATTATATT
78671262 T
1 T
78671263 CAATCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTAAAAAATAAATATTATATT
Found at i:78674104 original size:44 final size:44
Alignment explanation
Indices: 78674049--78674162 Score: 210
Period size: 44 Copynumber: 2.6 Consensus size: 44
78674039 GATACAAGCT
*
78674049 AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTGTGTC
1 AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTATGTC
*
78674093 AGTGTAAGACCTGTTTGGGACATGACGTCAGCTTGTTTTATGTC
1 AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTATGTC
78674137 AGTGTAAGACCTGTTTGGGACATGGC
1 AGTGTAAGACCTGTTTGGGACATGGC
78674163 ATCGACACCG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (44 bp):
AGTGTAAGACCTGTTTGGGACATGGCGTCAGCTTGTTTTATGTC
Found at i:78674107 original size:22 final size:22
Alignment explanation
Indices: 78674082--78674152 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
78674072 GGCGTCAGCT
78674082 TGTTTTGTGTCAGTGTAAGACC
1 TGTTTTGTGTCAGTGTAAGACC
* * * * *
78674104 TG-TTTGGGACATGACGTCAG-CT
1 TGTTTTGTGTCA-G-TGTAAGACC
*
78674126 TGTTTTATGTCAGTGTAAGACC
1 TGTTTTGTGTCAGTGTAAGACC
78674148 TGTTT
1 TGTTT
78674153 GGGACATGGC
Statistics
Matches: 34, Mismatches: 11, Indels: 8
0.64 0.21 0.15
Matches are distributed among these distances:
21 11 0.32
22 13 0.38
23 10 0.29
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (22 bp):
TGTTTTGTGTCAGTGTAAGACC
Found at i:78677618 original size:30 final size:30
Alignment explanation
Indices: 78677576--78677643 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
78677566 ACCCCAGGAG
* *
78677576 ACACATGGCCATGTACCAAGGCCGTGTGTC
1 ACACACGGCCATGTACCAAGGCCATGTGTC
* **
78677606 ATACACGGCCATGTACCAATTCCATGTGTC
1 ACACACGGCCATGTACCAAGGCCATGTGTC
78677636 ACACACGG
1 ACACACGG
78677644 TTGAGCCATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (30 bp):
ACACACGGCCATGTACCAAGGCCATGTGTC
Found at i:78678730 original size:43 final size:43
Alignment explanation
Indices: 78678669--78678781 Score: 199
Period size: 43 Copynumber: 2.6 Consensus size: 43
78678659 CAATGCCATT
*
78678669 TCCCAGATATGGTCTTACATGTAATCAAAATACCATGCAAATG
1 TCCCAGATATGGTCTTACATGTAATCAAAATACAATGCAAATG
*
78678712 TCCCACATATGGTCTTACATGTAATCAAAATACAATGCAAATG
1 TCCCAGATATGGTCTTACATGTAATCAAAATACAATGCAAATG
*
78678755 TCCCAGACATGGTCTTACATGTAATCA
1 TCCCAGATATGGTCTTACATGTAATCA
78678782 CATCTCGGTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGTAATCAAAATACAATGCAAATG
Found at i:78683198 original size:43 final size:42
Alignment explanation
Indices: 78683058--78683220 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 42
78683048 TAGGGTTACT
* *
78683058 GAGATTACGTGTAAGACCATATTTGGGATATGGCATCAATAC
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* ** * *
78683100 GAGATTTCGTGTAAGACCATATCCAGGATATGACATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * * *
78683142 GAGACTT-TGTGTAAGACTATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
* *
78683185 GAGATTACATGTAAGACCATATCTGTGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
78683221 TGGTATGGTA
Statistics
Matches: 97, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 64 0.66
43 33 0.34
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:78686070 original size:74 final size:74
Alignment explanation
Indices: 78685992--78686196 Score: 243
Period size: 74 Copynumber: 2.8 Consensus size: 74
78685982 GCCATAATTA
* * * * * * *
78685992 GGAAGCTCATGCGAGCCAATAACGGGTAA-CTCTGAAGAGCCATTAATTAGAAAGCTCTGGATAG
1 GGAAGTTCAAGCGAGCCAATATCGGG-AAGCTCTGAAGAGCCATTAATCAGAAAGCTCCGAATAA
*
78686056 CCATATATCT
65 CCATATATCG
* * *
78686066 GGAAGTTCAAGCAAGCTAATATCGGGAAGCTC-CAGAGAGCCATTAATCAGAAAGCTCCGAATAA
1 GGAAGTTCAAGCGAGCCAATATCGGGAAGCTCTGA-AGAGCCATTAATCAGAAAGCTCCGAATAA
78686130 CCATATATCG
65 CCATATATCG
* * * *
78686140 GGAAGTTTAAGCGAGCCACTATTGGGAAGCTCTGGAGAGCCATTAATCAGAAAGCTC
1 GGAAGTTCAAGCGAGCCAATATCGGGAAGCTCTGAAGAGCCATTAATCAGAAAGCTC
78686197 ACAAAGAACC
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
73 3 0.03
74 107 0.97
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (74 bp):
GGAAGTTCAAGCGAGCCAATATCGGGAAGCTCTGAAGAGCCATTAATCAGAAAGCTCCGAATAAC
CATATATCG
Found at i:78686350 original size:25 final size:24
Alignment explanation
Indices: 78686305--78686373 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
78686295 CAAGATGCTC
*
78686305 CGAAGAACTAT-TAACGGGAAGCT
1 CGAAGAACCATATAACGGGAAGCT
78686328 CGCAAGAACCATATAACGGGAAGCT
1 CG-AAGAACCATATAACGGGAAGCT
* *
78686353 CGAGAGGACCATATATCGGGA
1 CGA-AGAACCATATAACGGGA
78686374 TGATCATGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.05
24 9 0.22
25 29 0.73
ACGTcount: A:0.38, C:0.20, G:0.28, T:0.14
Consensus pattern (24 bp):
CGAAGAACCATATAACGGGAAGCT
Found at i:78689236 original size:40 final size:38
Alignment explanation
Indices: 78689191--78689286 Score: 95
Period size: 40 Copynumber: 2.5 Consensus size: 38
78689181 ACGGTACTTA
*
78689191 ATGGTGTGTAGGGTTGGATGGG-AAGATTTTATCCCCAT
1 ATGGTGTGTAGGGTTGGATGGGTAA-ATTTTATCCCCAC
* * * * *
78689229 ATTTGGTGTGCAGGGATGGGTGGGTCAATTTTATCCTCAC
1 A--TGGTGTGTAGGGTTGGATGGGTAAATTTTATCCCCAC
*
78689269 ATGGTGTGTTGGGTTGGA
1 ATGGTGTGTAGGGTTGGA
78689287 CGGAGTTGGT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
38 14 0.31
40 30 0.67
41 1 0.02
ACGTcount: A:0.18, C:0.10, G:0.36, T:0.35
Consensus pattern (38 bp):
ATGGTGTGTAGGGTTGGATGGGTAAATTTTATCCCCAC
Found at i:78706625 original size:17 final size:17
Alignment explanation
Indices: 78706600--78706633 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78706590 TAGACACACA
78706600 GGTGCGTGTCTAGGCCG
1 GGTGCGTGTCTAGGCCG
*
78706617 GGTGTGTGTCTAGGCCG
1 GGTGCGTGTCTAGGCCG
78706634 TATGTGACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.21, G:0.47, T:0.26
Consensus pattern (17 bp):
GGTGCGTGTCTAGGCCG
Found at i:78706639 original size:17 final size:17
Alignment explanation
Indices: 78706605--78706639 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
78706595 ACACAGGTGC
*
78706605 GTGTCTAGGCCGGGTGT
1 GTGTCTAGGCCGGATGT
*
78706622 GTGTCTAGGCCGTATGT
1 GTGTCTAGGCCGGATGT
78706639 G
1 G
78706640 ACACACGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.17, G:0.43, T:0.31
Consensus pattern (17 bp):
GTGTCTAGGCCGGATGT
Found at i:78709282 original size:23 final size:23
Alignment explanation
Indices: 78709252--78709300 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
78709242 CCCATATTGT
*
78709252 TTGTAAAGAAGAAAGACGGTTCA
1 TTGTAAAGAAGAAAAACGGTTCA
*
78709275 TTGTAAAGAAGAAAAATGGTTCA
1 TTGTAAAGAAGAAAAACGGTTCA
78709298 TTG
1 TTG
78709301 AGGCTATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (23 bp):
TTGTAAAGAAGAAAAACGGTTCA
Found at i:78720050 original size:20 final size:20
Alignment explanation
Indices: 78720025--78720098 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
78720015 AACAGGGGTC
*
78720025 ACACGCCCATGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
78720045 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
78720065 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
78720085 ACACACCCGTGTGG
1 ACACGCCCGTGTGG
78720099 ATAGGCCGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.14, C:0.27, G:0.36, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:78724521 original size:18 final size:18
Alignment explanation
Indices: 78724478--78724522 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
78724468 TGTGGAACTA
*
78724478 GGCAGAGATGAAGATGGT
1 GGCAGAGGTGAAGATGGT
*
78724496 GGCAGAGGTGAAGGTGGT
1 GGCAGAGGTGAAGATGGT
*
78724514 GGTAGAGGT
1 GGCAGAGGT
78724523 TGGGTTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.04, G:0.51, T:0.18
Consensus pattern (18 bp):
GGCAGAGGTGAAGATGGT
Found at i:78726562 original size:19 final size:19
Alignment explanation
Indices: 78726538--78726581 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
78726528 GGTGGTGGTC
78726538 GGCTGATGTTGGGGCATAG
1 GGCTGATGTTGGGGCATAG
* *
78726557 GGCTGATGTTGGGGCGTGG
1 GGCTGATGTTGGGGCATAG
78726576 GGCTGA
1 GGCTGA
78726582 GCTTTGTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.11, C:0.11, G:0.52, T:0.25
Consensus pattern (19 bp):
GGCTGATGTTGGGGCATAG
Found at i:78737630 original size:12 final size:12
Alignment explanation
Indices: 78737613--78737640 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
78737603 TTGGAAAGAA
78737613 TTCATAATGTGT
1 TTCATAATGTGT
78737625 TTCATAATGTGT
1 TTCATAATGTGT
78737637 TTCA
1 TTCA
78737641 CGTGTTGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (12 bp):
TTCATAATGTGT
Found at i:78749234 original size:21 final size:20
Alignment explanation
Indices: 78749204--78749242 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
78749194 TCTTTTGGAC
78749204 GTGGACGGTTTGGGACCTTAA
1 GTGGACGGTTTGGG-CCTTAA
*
78749225 GTGGATGGTTTGGGCCTT
1 GTGGACGGTTTGGGCCTT
78749243 TTCCTCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.13, C:0.13, G:0.41, T:0.33
Consensus pattern (20 bp):
GTGGACGGTTTGGGCCTTAA
Found at i:78750883 original size:31 final size:31
Alignment explanation
Indices: 78750838--78751007 Score: 105
Period size: 31 Copynumber: 5.5 Consensus size: 31
78750828 GAACACTGGC
* * *
78750838 ACATAGTACTTGATAAAATATAAACATCAAC
1 ACATAGTGCCTGATAAAATATAAACATCAAT
* * * *
78750869 ACATTGTGCCTGATACAATATGAACA-CTGAT
1 ACATAGTGCCTGATAAAATATAAACATC-AAT
* * *
78750900 ACATAGTACCTGATAAAATATAATCACCAAT
1 ACATAGTGCCTGATAAAATATAAACATCAAT
* **
78750931 ACATAGT-ACTAGATAAAATATATTCATCCAA-
1 ACATAGTGCCT-GATAAAATATAAACAT-CAAT
* * * * *
78750962 ACATTA-TGCCTGAGACAATATGAATACCAAT
1 ACA-TAGTGCCTGATAAAATATAAACATCAAT
*
78750993 ACATAGTACCTGATA
1 ACATAGTGCCTGATA
78751008 TTTCAAAACC
Statistics
Matches: 105, Mismatches: 26, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
30 8 0.08
31 89 0.85
32 8 0.08
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (31 bp):
ACATAGTGCCTGATAAAATATAAACATCAAT
Found at i:78750946 original size:93 final size:93
Alignment explanation
Indices: 78750838--78751007 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
78750828 GAACACTGGC
* * * **
78750838 ACATAGTACTTGATAAAATATAAACAT-CAACACATTGTGCCTGATACAATATGAACACTGATAC
1 ACATAGTACTAGATAAAATATAAACATCCAA-ACATTATGCCTGAGACAATATGAACACCAATAC
78750902 ATAGTACCTGATAAAATATAATCACCAAT
65 ATAGTACCTGATAAAATATAATCACCAAT
** *
78750931 ACATAGTACTAGATAAAATATATTCATCCAAACATTATGCCTGAGACAATATGAATACCAATACA
1 ACATAGTACTAGATAAAATATAAACATCCAAACATTATGCCTGAGACAATATGAACACCAATACA
78750996 TAGTACCTGATA
66 TAGTACCTGATA
78751008 TTTCAAAACC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 65 0.96
94 3 0.04
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (93 bp):
ACATAGTACTAGATAAAATATAAACATCCAAACATTATGCCTGAGACAATATGAACACCAATACA
TAGTACCTGATAAAATATAATCACCAAT
Found at i:78750951 original size:62 final size:62
Alignment explanation
Indices: 78750814--78750951 Score: 161
Period size: 62 Copynumber: 2.2 Consensus size: 62
78750804 TATCTCAACC
* * * * *
78750814 ACTGATAAGATAATGAACACTGGCACATAGTACTTGATAAAATATAAACATCAACACATTGTG
1 ACTGATAAAAT-ATGAACACTGACACATAGTACCTGATAAAATATAAACACCAACACATAGTG
* * * * *
78750877 CCTGATACAATATGAACACTGATACATAGTACCTGATAAAATATAATCACCAATACATAGT-
1 ACTGATAAAATATGAACACTGACACATAGTACCTGATAAAATATAAACACCAACACATAGTG
78750938 ACTAGATAAAATAT
1 ACT-GATAAAATAT
78750952 ATTCATCCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
61 2 0.03
62 52 0.84
63 8 0.13
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.26
Consensus pattern (62 bp):
ACTGATAAAATATGAACACTGACACATAGTACCTGATAAAATATAAACACCAACACATAGTG
Found at i:78755570 original size:20 final size:20
Alignment explanation
Indices: 78755545--78755587 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
78755535 ATGAAGTATG
78755545 CGAAATTATGCTTTATTACA
1 CGAAATTATGCTTTATTACA
78755565 CGAAATTATGCTTTATTACA
1 CGAAATTATGCTTTATTACA
78755585 CGA
1 CGA
78755588 TTTTTGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (20 bp):
CGAAATTATGCTTTATTACA
Found at i:78769787 original size:40 final size:40
Alignment explanation
Indices: 78769743--78769833 Score: 173
Period size: 40 Copynumber: 2.3 Consensus size: 40
78769733 TTTGGTTAAG
*
78769743 AAATTATAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
1 AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
78769783 AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
1 AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
78769823 AAATTGTAAAA
1 AAATTGTAAAA
78769834 GCTGCAAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.32
Consensus pattern (40 bp):
AAATTGTAAAATTTAGTTAGTTAATTAGAAGAAAGGGAAT
Found at i:78773290 original size:40 final size:39
Alignment explanation
Indices: 78773235--78773373 Score: 143
Period size: 40 Copynumber: 3.5 Consensus size: 39
78773225 ATCGGGCTAG
* ** *
78773235 TGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTTA
1 TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGG-TTTA
** * *
78773275 TGCCTAGCAGGCTTTGTGCTGGTGTATTTATCGGGCTTA
1 TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGGTTTA
* * * *
78773314 GTGCCTAGCAGGCTTTGTGTCATTGTAGTTATCGGGCTTGA
1 -TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGG-TTTA
78773355 TGCCTAGCAGGCTTTGTGC
1 TGCCTAGCAGGCTTTGTGC
78773374 TGGTGTATCA
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.94
41 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.29, T:0.35
Consensus pattern (39 bp):
TGCCTAGCAGGCTTTGTGCCAGTGTAATTATCGGGTTTA
Found at i:78773329 original size:80 final size:79
Alignment explanation
Indices: 78773219--78773381 Score: 236
Period size: 80 Copynumber: 2.1 Consensus size: 79
78773209 CTTGTATTGA
*
78773219 GTATTTATCGGGCTAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTTATGCCTAGCA
1 GTATTTATCGGGCTAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTGATGCCTAGCA
78773284 GGCTTTGTGCTGGT
66 GGCTTTGTGCTGGT
* *** * * * *
78773298 GTATTTATCGGGCTTAGTGCCTAGCAGGCTTTGTGTCATTGTAGTTATCGGGCTTGATGCCTAGC
1 GTATTTATCGGGC-TAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTGATGCCTAGC
78773363 AGGCTTTGTGCTGGT
65 AGGCTTTGTGCTGGT
78773378 GTAT
1 GTAT
78773382 CAAATTGTCT
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 13 0.18
80 61 0.82
ACGTcount: A:0.17, C:0.17, G:0.29, T:0.36
Consensus pattern (79 bp):
GTATTTATCGGGCTAGTGCCTAGCAAGCTTTGCACCAGTGTAATTATAGGGATTGATGCCTAGCA
GGCTTTGTGCTGGT
Found at i:78784482 original size:70 final size:69
Alignment explanation
Indices: 78784398--78784664 Score: 250
Period size: 70 Copynumber: 3.8 Consensus size: 69
78784388 AATCTCTTTG
* * *
78784398 CGCCCAGC-ACTAGTTGGATATA-CCAACAATAAGTTTACCCAGCACTAGTCAAATAATTGATAA
1 CGCCCAGCGA-TAGTTGGATA-AGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGA-AA
78784461 TGTTTTA
63 TGTTTTA
* * * * * *
78784468 CGCCCAGCGATAGTTGGATAAGCCAACGATAAGTGTGCCCAATACTAGTCGAACAATCGAAGATT
1 CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGAA-ATG
78784533 TTTTA
65 TTTTA
* * * * * ** **
78784538 CGCCCAGTGCTAGTTGGATAAGCCAACAATAAGTGTGGCTAGCACTAGTTGAATAATTGACGGTG
1 CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGA-AATG
*
78784603 TTTTG
65 TTTTA
* * * * * *
78784608 CGCCCAACGCTAGTTGGATAAACCAACGATAATTGTGCCTAACACTAGTCAAATAAT
1 CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAAT
78784665 CAATAAGATT
Statistics
Matches: 161, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
69 2 0.01
70 158 0.98
71 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (69 bp):
CGCCCAGCGATAGTTGGATAAGCCAACAATAAGTGTGCCCAACACTAGTCAAATAATTGAAATGT
TTTA
Found at i:78784655 original size:140 final size:140
Alignment explanation
Indices: 78784398--78784657 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 140
78784388 AATCTCTTTG
* *
78784398 CGCCCAGCACTAGTTGGATATACCAACAATAAGTTTACCCAGCACTAGTCAAATAATTGATAATG
1 CGCCCAGCACTAGTTGGATATACCAACAATAAGTGTACCCAGCACTAGTCAAATAATTGACAATG
* * *
78784463 TTTTACGCCCAGCGATAGTTGGATAAGCCAACGATAAGTGTGCCCAATACTAGTCGAACAATCGA
66 TTTTACGCCCAACGATAGTTGGATAAACCAACGATAAGTGTGCCCAACACTAGTCGAACAATCGA
78784528 AGATTTTTTA
131 AGATTTTTTA
** ** * ** **
78784538 CGCCCAGTGCTAGTTGGATA-AGCCAACAATAAGTGTGGCTAGCACTAGTTGAATAATTGACGGT
1 CGCCCAGCACTAGTTGGATATA-CCAACAATAAGTGTACCCAGCACTAGTCAAATAATTGACAAT
* * * *
78784602 GTTTTGCGCCCAACGCTAGTTGGATAAACCAACGATAATTGTGCCTAACACTAGTC
65 GTTTTACGCCCAACGATAGTTGGATAAACCAACGATAAGTGTGCCCAACACTAGTC
78784658 AAATAATCAA
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
139 1 0.01
140 100 0.99
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (140 bp):
CGCCCAGCACTAGTTGGATATACCAACAATAAGTGTACCCAGCACTAGTCAAATAATTGACAATG
TTTTACGCCCAACGATAGTTGGATAAACCAACGATAAGTGTGCCCAACACTAGTCGAACAATCGA
AGATTTTTTA
Found at i:78785829 original size:19 final size:19
Alignment explanation
Indices: 78785805--78785902 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
78785795 AATCTTTAGG
78785805 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
78785824 GATATGCAATATCAGATAT
1 GATATGCAATCTTAGATAT
78785843 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
78785860 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
78785879 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
78785900 GAT
1 GAT
78785903 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 15 0.21
19 47 0.66
21 9 0.13
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:78785852 original size:36 final size:37
Alignment explanation
Indices: 78785805--78785902 Score: 135
Period size: 36 Copynumber: 2.6 Consensus size: 37
78785795 AATCTTTAGG
78785805 GATATGCAATCTTAGATATGATATGCAATATCAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATCAGATAT
* *
78785843 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATCAGATAT
78785879 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
78785903 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
36 34 0.63
38 11 0.20
40 9 0.17
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATCAGATAT
Found at i:78789009 original size:13 final size:13
Alignment explanation
Indices: 78788991--78789015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78788981 CCGAAACTAG
78788991 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
78789004 AAAGAAAAAAAA
1 AAAGAAAAAAAA
78789016 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:78790355 original size:40 final size:39
Alignment explanation
Indices: 78790094--78790393 Score: 371
Period size: 39 Copynumber: 7.6 Consensus size: 39
78790084 TTGAATGATG
*
78790094 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
78790132 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
78790173 TCTGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
78790211 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
78790250 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
78790289 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
78790328 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
78790367 AACCGGGTTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
78790394 AACGAGGAGC
Statistics
Matches: 237, Mismatches: 16, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
38 36 0.15
39 131 0.55
40 58 0.24
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:78790407 original size:40 final size:40
Alignment explanation
Indices: 78790290--78790426 Score: 104
Period size: 40 Copynumber: 3.5 Consensus size: 40
78790280 GATACTAATT
* ** *
78790290 CCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTTGAACGAAG-GACTATAA
** **
78790328 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGAACGAAGGACTATAA
* *
78790369 CCGGGTTATGTCCCGAAGGCATTTGAACG-AGGAGCTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGAACGAAGGA-CTATAA
* *
78790409 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
78790427 TACGTGATTT
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 24 0.29
40 56 0.67
41 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGAACGAAGGACTATAA
Found at i:78798245 original size:39 final size:39
Alignment explanation
Indices: 78798150--78798332 Score: 257
Period size: 39 Copynumber: 4.7 Consensus size: 39
78798140 TTGAATGATG
*
78798150 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
78798188 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
78798229 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
78798268 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
78798307 TCCGGGCTAAGCCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTTGT
78798333 TTTGGTACCC
Statistics
Matches: 132, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 108 0.82
40 12 0.09
41 11 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:78798395 original size:40 final size:40
Alignment explanation
Indices: 78798340--78798433 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 40
78798330 TGTTTTGGTA
* *
78798340 CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGT
1 CCCGAAGGCATTTGTGCGAATTACTATAA-CCAGGTTAAGT
*
78798380 CCCGAAGGCATTTGTGCGAATTACTATAACCAGGTTATGT
1 CCCGAAGGCATTTGTGCGAATTACTATAACCAGGTTAAGT
78798420 CCCGAAGGCATTTG
1 CCCGAAGGCATTTG
78798434 AACGAGGAGC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAATTACTATAACCAGGTTAAGT
Found at i:78798447 original size:40 final size:39
Alignment explanation
Indices: 78798372--78798466 Score: 93
Period size: 40 Copynumber: 2.4 Consensus size: 39
78798362 ACTAAATCCG
** **
78798372 GGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACC
1 GGTTAAGTCCCGAAGGCATTTGAACGAAGGACTATAACC
* *
78798411 AGGTTATGTCCCGAAGGCATTTGAACG-AGGAGCTATATCC
1 -GGTTAAGTCCCGAAGGCATTTGAACGAAGGA-CTATAACC
* *
78798451 GGTTAAATTCCGAAGG
1 GGTTAAGTCCCGAAGG
78798467 TACGTGATTT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
39 15 0.33
40 30 0.67
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (39 bp):
GGTTAAGTCCCGAAGGCATTTGAACGAAGGACTATAACC
Found at i:78802836 original size:8 final size:8
Alignment explanation
Indices: 78802822--78802881 Score: 50
Period size: 9 Copynumber: 6.9 Consensus size: 8
78802812 TCTATTTCAA
78802822 AAAAAAAGG
1 AAAAAAA-G
78802831 AAAAAAAG
1 AAAAAAAG
78802839 AAAAGAAAACG
1 -AAA-AAAA-G
*
78802850 AAAAAAAT
1 AAAAAAAG
78802858 AAAATAAA-
1 AAAA-AAAG
78802866 AAGAAAAAG
1 AA-AAAAAG
78802875 AAAAAAA
1 AAAAAAA
78802882 ATGGAGAGGC
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
8 15 0.34
9 21 0.48
10 7 0.16
11 1 0.02
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:78802842 original size:6 final size:6
Alignment explanation
Indices: 78802833--78802879 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
78802823 AAAAAAGGAA
* * *
78802833 AAAAAG -AAAAG AAAACG AAAAAA ATAAAAT AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAA
78802880 AAATGGAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:78802847 original size:19 final size:19
Alignment explanation
Indices: 78802820--78802882 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
78802810 CTTCTATTTC
*
78802820 AAAAAAAAAGGAAAAAAAG
1 AAAAAAAAAAGAAAAAAAG
* * *
78802839 AAAAGAAAACGAAAAAAAT
1 AAAAAAAAAAGAAAAAAAG
*
78802858 AAAATAAAAAG--AAAAAG
1 AAAAAAAAAAGAAAAAAAG
78802875 AAAAAAAA
1 AAAAAAAA
78802883 TGGAGAGGCC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
17 12 0.32
19 25 0.68
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAAAG
Found at i:78803973 original size:84 final size:84
Alignment explanation
Indices: 78803831--78804280 Score: 614
Period size: 84 Copynumber: 5.4 Consensus size: 84
78803821 ATTCAGCGCT
* *
78803831 TTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCGTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
*
78803896 AGAAGATCGAAGACTCGCC
66 AGCAGATCGAAGACTCGCC
*
78803915 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATTCTTATCTCCCTTAGCAGTAGTG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGA-TCTTATCTCCCTAAGCAGTAGTG
78803979 GAGCAGATCGAAGACTCGCC
65 GAGCAGATCGAAGACTCGCC
* * *
78803999 TTAATCCCCTAAGTAGTAGGGTAACAGGTT-CA----CAGATCTTATCTCCCTAAGCAGTAGCGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
*
78804059 AGCAGATCGACGACGACTCACC
66 AGCAGATCGA--A-GACTCGCC
*
78804081 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
*
78804146 AGCAGATCGAAGACCCGCC
66 AGCAGATCGAAGACTCGCC
* * **
78804165 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCTGATCTTA--TCCCTAA-TAGTAGCAG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
*
78804227 AGCAGATCGAAGAAGAT-GCGC
66 AGCAGATCGAAG-A-CTCGC-C
* *
78804248 TTAACCCCCTAAGCAGTAGGGTACCAGGTTAAA
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
78804281 GTATAGCAGA
Statistics
Matches: 330, Mismatches: 23, Indels: 27
0.87 0.06 0.07
Matches are distributed among these distances:
79 34 0.10
80 1 0.00
81 19 0.06
82 46 0.14
83 35 0.11
84 157 0.48
85 1 0.00
87 37 0.11
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (84 bp):
TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACTCGCC
Found at i:78804109 original size:166 final size:165
Alignment explanation
Indices: 78803831--78804280 Score: 583
Period size: 166 Copynumber: 2.7 Consensus size: 165
78803821 ATTCAGCGCT
* * *
78803831 TTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCGTAAGCAGTAGTGG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA--T-CAGATCTTATCTCCCTAAGCAGTAGCGG
* *
78803896 AGAAGATCGA-AGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATTCT
63 AGCAGATCGAGAGACTC-CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGA-TCT
* *
78803959 TATCTCCCTTAGCAGTAGTGGAGCAGATCGAAGACTCGCC
126 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCC
* *
78803999 TTAATCCCCTAAGTAGTAGGGTAACAGGTT-CA-CAGATCTTATCTCCCTAAGCAGTAGCGGAGC
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGCAGTAGCGGAGC
78804062 AGATCGACGACGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTA
66 AGATCGA-GA-GACTC-CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTA
78804127 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCC
128 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCC
* * *
78804165 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCTGATCTTA--TCCCTAA-TAGTAGCAG
1 TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA--T-CAGATCTTATCTCCCTAAGCAGTAGCGG
* * *
78804227 AGCAGATCGAAGAAGA-TGCGCTTAACCCCCTAAGCAGTAGGGTACCAGGTTAAA
63 AGCAGATCG-AG-AGACT-CCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
78804281 GTATAGCAGA
Statistics
Matches: 252, Mismatches: 18, Indels: 25
0.85 0.06 0.08
Matches are distributed among these distances:
163 35 0.14
165 1 0.00
166 115 0.46
167 36 0.14
168 48 0.19
169 9 0.04
171 8 0.03
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (165 bp):
TTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATCAGATCTTATCTCCCTAAGCAGTAGCGGAGC
AGATCGAGAGACTCCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCT
CCCTAAGCAGTAGTGGAGCAGATCGAAGACCCGCC
Found at i:78804216 original size:41 final size:41
Alignment explanation
Indices: 78804087--78804217 Score: 99
Period size: 41 Copynumber: 3.1 Consensus size: 41
78804077 CACCTTAATC
78804087 CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTA--T
* * ** * * *
78804130 CCCTAAGCAGTAGTGG-AGCAGATCGAA--GACCCG-CCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTA-CAGATCTT-AT
* *
78804170 CCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCTGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTAT
78804212 CCCTAA
1 CCCTAA
78804218 TAGTAGCAGA
Statistics
Matches: 65, Mismatches: 15, Indels: 18
0.66 0.15 0.18
Matches are distributed among these distances:
40 3 0.05
41 30 0.46
42 7 0.11
43 23 0.35
44 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTAT
Found at i:78804583 original size:87 final size:88
Alignment explanation
Indices: 78804405--78804586 Score: 212
Period size: 87 Copynumber: 2.1 Consensus size: 88
78804395 CGGAGAGCAG
* * *
78804405 ATCGAAGACATAGCATATCTGACCTTCTAATATTTCATATTGAAGCAGATCCAAGATGATTTAGC
1 ATCGAAGACATAGCAGATCTGACCTTCTAATATTTCACACTGAAGCAGATCCAAGATGATTTAGC
* *
78804470 ATCCTTGTGTTTACAAGGAGCAA
66 ATCCTTGTATTTACAAGGAACAA
* * *
78804493 ATCGAAGACATAGCAGATCTGACCTTC-AGGTGTTT-ACGCTGAAGCAGATCCAAGATGATTT-G
1 ATCGAAGACATAGCAGATCTGACCTTCTA-ATATTTCACACTGAAGCAGATCCAAGATGATTTAG
*
78804555 ACAT-CTCTGTATTGT-CAAGGAACGA
65 -CATCCT-TGTATT-TACAAGGAACAA
78804580 ATCGAAG
1 ATCGAAG
78804587 GTAGCAGATT
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
86 3 0.04
87 47 0.58
88 31 0.38
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (88 bp):
ATCGAAGACATAGCAGATCTGACCTTCTAATATTTCACACTGAAGCAGATCCAAGATGATTTAGC
ATCCTTGTATTTACAAGGAACAA
Found at i:78804987 original size:19 final size:20
Alignment explanation
Indices: 78804963--78805005 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
78804953 AATCTTTAAG
78804963 GATATGCAATCTT-AGATAT
1 GATATGCAATCTTAAGATAT
78804982 GATATGCAATCTTAAAGATAT
1 GATATGCAATCTT-AAGATAT
78805003 GAT
1 GAT
78805006 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (20 bp):
GATATGCAATCTTAAGATAT
Found at i:78822328 original size:14 final size:14
Alignment explanation
Indices: 78822309--78822338 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78822299 ATTTAACCGA
78822309 ATATACATAAACTC
1 ATATACATAAACTC
*
78822323 ATATACATATACTC
1 ATATACATAAACTC
78822337 AT
1 AT
78822339 GAATCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATACATAAACTC
Found at i:78822481 original size:19 final size:20
Alignment explanation
Indices: 78822457--78822495 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
78822447 CCGAATGTAC
78822457 TTTTCATATACA-CATATAT
1 TTTTCATATACATCATATAT
*
78822476 TTTTCATTTACATCATATAT
1 TTTTCATATACATCATATAT
78822496 GATTTGCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTCATATACATCATATAT
Found at i:78823245 original size:33 final size:33
Alignment explanation
Indices: 78823203--78823301 Score: 109
Period size: 33 Copynumber: 3.2 Consensus size: 33
78823193 CAGATCGGTA
* *
78823203 ACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
*
78823236 ACAGTCTGGGCCTTAGCCCTATACAG--T-A--
1 ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
* * *
78823264 ACAGTGTGGGCCTAAGCCCAATGCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
78823297 ACAGT
1 ACAGT
78823302 GTAGTGCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
28 22 0.40
30 2 0.04
31 2 0.04
33 29 0.53
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (33 bp):
ACAGTCTGGGCCTAAGCCCTATACAGTATCAGT
Found at i:78823274 original size:61 final size:61
Alignment explanation
Indices: 78823175--78823301 Score: 175
Period size: 61 Copynumber: 2.1 Consensus size: 61
78823165 AGTGAATAAC
* * * *
78823175 ACAGTCTGGGCCTAAGCCCAGATCGGTAACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCAGATCAGTAACAGTCTGGGCCTAAGCCCAATGCAGTATCAGT
* * *
78823236 ACAGTCTGGGCCTTAGCCC-TATACAGTAACAGTGTGGGCCTAAGCCCAATGCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCAGAT-CAGTAACAGTCTGGGCCTAAGCCCAATGCAGTATCAGT
78823297 ACAGT
1 ACAGT
78823302 GTAGTGCAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 2 0.03
61 56 0.97
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (61 bp):
ACAGTCTGGGCCTAAGCCCAGATCAGTAACAGTCTGGGCCTAAGCCCAATGCAGTATCAGT
Found at i:78823303 original size:33 final size:31
Alignment explanation
Indices: 78823175--78823301 Score: 108
Period size: 28 Copynumber: 4.2 Consensus size: 31
78823165 AGTGAATAAC
*
78823175 ACAGTCTGGGCCTAAG-CC--CAG-ATCGGT
1 ACAGTCTGGGCCTAAGCCCATCAGTATCAGT
*
78823202 AACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 -ACAGTCTGGGCCTAAGCCC-A-TCAGTATCAGT
*
78823236 ACAGTCTGGGCCTTAGCCC-T-A-TA-CAGT
1 ACAGTCTGGGCCTAAGCCCATCAGTATCAGT
*
78823263 AACAGTGTGGGCCTAAGCCCAATGCAGTATCAGT
1 -ACAGTCTGGGCCTAAGCCC-AT-CAGTATCAGT
78823297 ACAGT
1 ACAGT
78823302 GTAGTGCAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 21
0.76 0.05 0.20
Matches are distributed among these distances:
27 4 0.05
28 34 0.42
29 3 0.04
30 2 0.02
32 1 0.01
33 28 0.35
34 9 0.11
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (31 bp):
ACAGTCTGGGCCTAAGCCCATCAGTATCAGT
Found at i:78823677 original size:27 final size:27
Alignment explanation
Indices: 78823647--78823839 Score: 278
Period size: 27 Copynumber: 7.1 Consensus size: 27
78823637 GGGCATAATC
* * *
78823647 GTCATTTTACCATATAGGGGTACTACG
1 GTCATTTTACCCTACAGGGGTATTACG
78823674 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
78823701 ATCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
78823728 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
78823755 GTCATTTTACCCTACTGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
78823782 GTCATTTTACCCTACAGGGCTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
78823809 ATCATTTTACCCTATAAGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
78823836 GTCA
1 GTCA
78823840 AATAACGACC
Statistics
Matches: 152, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:78825943 original size:41 final size:43
Alignment explanation
Indices: 78825861--78825998 Score: 113
Period size: 41 Copynumber: 3.2 Consensus size: 43
78825851 TCCCAGAAGT
* * *
78825861 GGTCTTACATGCTATCACATATCGATGCCACTGTCCCAGACAA
1 GGTCTTACATGCAATCAAATATCGATGCCACTATCCCAGACAA
* *
78825904 GGTCTTACATG-AATCAAATA-CGATGCCGA-TATCCTAGACAT
1 GGTCTTACATGCAATCAAATATCGATGCC-ACTATCCCAGACAA
* * * * * *
78825945 GGTTTTACACGTAACCACATATATCGATGCCAAC-GTCCCAGACAT
1 GGTCTTACATGCAATCA-A-ATATCGATGCC-ACTATCCCAGACAA
78825990 GGTCTTACA
1 GGTCTTACA
78825999 CGAGAACACA
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
41 25 0.32
42 12 0.16
43 12 0.16
44 3 0.04
45 25 0.32
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGCAATCAAATATCGATGCCACTATCCCAGACAA
Found at i:78826009 original size:45 final size:43
Alignment explanation
Indices: 78825879--78826011 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 43
78825869 ATGCTATCAC
* * *
78825879 ATATCGATGCCACTGTCCCAGACAAGGTCTTACATGAATCA-A-
1 ATATCGATGCCAC-GTCCCAGACATGGTCTTACACGAAACACAT
** * * *
78825921 ATA-CGATGCCGATATCCTAGACATGGTTTTACACGTAACCACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACG-AAACACAT
78825965 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAGAACACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACGA-AACACAT
78826010 AT
1 AT
78826012 TAGAAATCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
41 24 0.33
42 8 0.11
43 1 0.01
44 4 0.06
45 35 0.49
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
ATATCGATGCCACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:78836823 original size:13 final size:14
Alignment explanation
Indices: 78836807--78836836 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
78836797 ATGCTTGATG
78836807 TTAATTGAA-GTAA
1 TTAATTGAATGTAA
78836820 TTAATTGAATGTAA
1 TTAATTGAATGTAA
78836834 TTA
1 TTA
78836837 TCTATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TTAATTGAATGTAA
Found at i:78839623 original size:19 final size:18
Alignment explanation
Indices: 78839595--78839634 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
78839585 GAATACTTCC
78839595 ATAAACGATAACTTATTCT
1 ATAAACGATAACTTATT-T
*
78839614 ATAAATGATAACTTATTT
1 ATAAACGATAACTTATTT
78839632 ATA
1 ATA
78839635 GGCGGTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (18 bp):
ATAAACGATAACTTATTT
Found at i:78840886 original size:17 final size:17
Alignment explanation
Indices: 78840825--78840886 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
78840815 AAACAAGGCT
78840825 AACAATATAAAAA-TATA
1 AACAA-ATAAAAAGTATA
* *
78840842 AATAAATAAACAAGTAAA
1 AACAAATAAA-AAGTATA
* * *
78840860 AACTATTAAAAAGTTTA
1 AACAAATAAAAAGTATA
78840877 AACAAATAAA
1 AACAAATAAA
78840887 TAAAAAATGA
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
16 5 0.15
17 19 0.56
18 10 0.29
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (17 bp):
AACAAATAAAAAGTATA
Found at i:78840899 original size:12 final size:12
Alignment explanation
Indices: 78840875--78840913 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
78840865 TTAAAAAGTT
78840875 TAAACAAATAAA
1 TAAACAAATAAA
78840887 TAAA-AAATGAAA
1 TAAACAAAT-AAA
*
78840899 TAAGCAAATAAA
1 TAAACAAATAAA
78840911 TAA
1 TAA
78840914 TTAAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (12 bp):
TAAACAAATAAA
Found at i:78840907 original size:20 final size:18
Alignment explanation
Indices: 78840884--78840929 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
78840874 TTAAACAAAT
78840884 AAATAAAAAATGAAATAA
1 AAATAAAAAATGAAATAA
* *
78840902 GCAAATAAATAATTAAATAA
1 --AAATAAAAAATGAAATAA
78840922 AAATAAAA
1 AAATAAAA
78840930 TATAACAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (18 bp):
AAATAAAAAATGAAATAA
Found at i:78840919 original size:12 final size:12
Alignment explanation
Indices: 78840880--78841016 Score: 63
Period size: 12 Copynumber: 11.2 Consensus size: 12
78840870 AAGTTTAAAC
78840880 AAATAAATAA-A
1 AAATAAATAATA
**
78840891 AAATGAAATAAGC
1 AAAT-AAATAATA
*
78840904 AAATAAATAATT
1 AAATAAATAATA
78840916 AAATAAA-AATA
1 AAATAAATAATA
*
78840927 AAAT--ATAACA
1 AAATAAATAATA
* *
78840937 AATTACA-AATGA
1 AAATAAATAAT-A
*
78840949 CAAT-AATAATA
1 AAATAAATAATA
78840960 ATAATAACATAATA
1 A-AATAA-ATAATA
78840974 GAAATAATAATAATA
1 -AAAT-A-AATAATA
*
78840989 ATAATAAAGAATA
1 A-AATAAATAATA
*
78841002 ATAAT-AGTAATA
1 A-AATAAATAATA
78841014 AAA
1 AAA
78841017 ATAATATTAA
Statistics
Matches: 98, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
9 1 0.01
10 6 0.06
11 17 0.17
12 35 0.36
13 16 0.16
14 11 0.11
15 11 0.11
16 1 0.01
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.24
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:78840958 original size:3 final size:3
Alignment explanation
Indices: 78840950--78841098 Score: 131
Period size: 3 Copynumber: 49.3 Consensus size: 3
78840940 TACAAATGAC
*
78840950 AAT AAT AAT AAT AAT AA- CAT AAT AGA- AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * * * * *
78840994 AAAG AAT AAT AAT AGT AAT AAA AAT AAT ATT AAC AGT AAT AAT AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * *
78841040 GGT AAT AAT AAAT AAT AGT AAT AAT AAT AAT AAT AAT AGT AAC AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
78841086 AGT AAC AAT AAT A
1 AAT AAT AAT AAT A
78841099 TATTAAATTA
Statistics
Matches: 113, Mismatches: 28, Indels: 10
0.75 0.19 0.07
Matches are distributed among these distances:
2 2 0.02
3 105 0.93
4 6 0.05
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:78840967 original size:32 final size:32
Alignment explanation
Indices: 78840923--78840995 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
78840913 ATTAAATAAA
*
78840923 AATAA-AAT-ATAACA-AATTACAAATGACAAT
1 AATAATAATAATAACATAA-TACAAATAACAAT
* *
78840953 AATAATAATAATAACATAATAGAAATAATAAT
1 AATAATAATAATAACATAATACAAATAACAAT
78840985 AATAATAATAA
1 AATAATAATAA
78840996 AGAATAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 5 0.14
31 3 0.08
32 27 0.73
33 2 0.05
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (32 bp):
AATAATAATAATAACATAATACAAATAACAAT
Found at i:78841256 original size:41 final size:41
Alignment explanation
Indices: 78841211--78841292 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
78841201 GAAGGACCAA
78841211 ATTGAAACGCACAAATAACGAGGGACAAAAAGGGAAATTTT
1 ATTGAAACGCACAAATAACGAGGGACAAAAAGGGAAATTTT
78841252 ATTGAAACGCACAAATAACGAGGGACAAAAAGGGAAATTTT
1 ATTGAAACGCACAAATAACGAGGGACAAAAAGGGAAATTTT
78841293 TCCTTCCCTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.49, C:0.12, G:0.22, T:0.17
Consensus pattern (41 bp):
ATTGAAACGCACAAATAACGAGGGACAAAAAGGGAAATTTT
Found at i:78842703 original size:44 final size:44
Alignment explanation
Indices: 78842586--78842720 Score: 139
Period size: 44 Copynumber: 3.0 Consensus size: 44
78842576 AGAGGTATAG
* * *
78842586 GACTTGTCGCCTT-AATCCGCTCCACTGCAACTTCAGGGAGATAG
1 GACTTGT-GCCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * ** *
78842630 GA-TTAGCTGTCTTCAGTCTGCTCTGCTGCAACTTTAGGGAGAGAA
1 GACTT-G-TGCCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* *
78842675 GACTTGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAA
1 GACTTGTGCCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
78842719 GA
1 GA
78842721 TTTTCCATGA
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
43 2 0.03
44 41 0.56
45 28 0.38
46 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (44 bp):
GACTTGTGCCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
Found at i:78843020 original size:45 final size:45
Alignment explanation
Indices: 78842964--78843086 Score: 183
Period size: 45 Copynumber: 2.7 Consensus size: 45
78842954 ATAGCTTCAA
* * * * *
78842964 TCTGTTCCACTGCAACTTTAGAGAAATAAGATTCGCTATCATTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCATTAG
*
78843009 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCATTAG
*
78843054 TCTGCTCCGCTGCAACTTCAGGGAGATAAGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT
78843087 TGTGAATTTA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCATTAG
Found at i:78843638 original size:12 final size:12
Alignment explanation
Indices: 78843621--78843645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78843611 ATCAAAGAAA
78843621 GCAAGCATTGTT
1 GCAAGCATTGTT
78843633 GCAAGCATTGTT
1 GCAAGCATTGTT
78843645 G
1 G
78843646 GAATACAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (12 bp):
GCAAGCATTGTT
Found at i:78843862 original size:3 final size:3
Alignment explanation
Indices: 78843841--78843880 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
78843831 CCTTTCCATT
* *
78843841 TTC TTA TTC TTC TTA TTC TTC TTC TTC TTC TTC TT- TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
78843881 GGAAAAGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:78846901 original size:40 final size:40
Alignment explanation
Indices: 78846857--78847118 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
78846847 GCTCCTCGTT
* *
78846857 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
78846897 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78846937 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78846976 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78847015 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
78847054 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
78847095 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78847119 CATCATTCAA
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 127 0.63
40 63 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:78854974 original size:39 final size:39
Alignment explanation
Indices: 78854857--78855118 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
78854847 GCTCCTCGTT
* * *
78854857 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
78854897 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
78854937 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
78854976 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
78855015 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
78855054 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
78855095 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
78855119 CATCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 60 0.30
41 11 0.05
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:78867584 original size:16 final size:15
Alignment explanation
Indices: 78867550--78867594 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
78867540 ATAGGGACCT
*
78867550 TTATAATATACACTA
1 TTATAATATACAATA
*
78867565 TTATAATATTCAAATA
1 TTATAATATAC-AATA
78867581 TTATAATATACAAT
1 TTATAATATACAAT
78867595 TAAGTTTGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (15 bp):
TTATAATATACAATA
Found at i:78873609 original size:46 final size:46
Alignment explanation
Indices: 78873438--78873724 Score: 244
Period size: 50 Copynumber: 6.1 Consensus size: 46
78873428 CATTGTTGTT
* * * *
78873438 ATGTGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATT
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-G
* * * *
78873484 ATGAAATGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAAAG
1 ATGTAA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG--AG
* * *
78873533 A-GACGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAG
1 ATG--TA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
*
78873581 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATC-GACTACGAG
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAG
* * *
78873627 ATGT--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AGAT
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGAG
* * * *
78873671 ATGTGAGAGCCAGTGTAAGACCATATCTGGGATATGGCATCGGCATCGAT
1 ATGT-A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG
78873721 ATGT
1 ATGT
78873725 GTAAGGTTTC
Statistics
Matches: 198, Mismatches: 25, Indels: 32
0.78 0.10 0.13
Matches are distributed among these distances:
44 36 0.18
45 4 0.02
46 43 0.22
47 33 0.17
48 15 0.08
49 14 0.07
50 52 0.26
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
Found at i:78873653 original size:44 final size:44
Alignment explanation
Indices: 78873447--78873662 Score: 202
Period size: 46 Copynumber: 4.7 Consensus size: 44
78873437 TATGTGAGCC
* * * *
78873447 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATGAAATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGA-GATG---TGCT
* * * *
78873494 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAAAGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-G-ACT--ACGAGA--TGTGCT
* * *
78873544 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTACGAGATGT--GCT
78873590 AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGCT
78873634 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
78873663 GCACAGATAT
Statistics
Matches: 141, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
44 32 0.23
45 3 0.02
46 41 0.29
47 27 0.19
48 1 0.01
49 1 0.01
50 32 0.23
51 2 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGCT
Found at i:78873711 original size:140 final size:141
Alignment explanation
Indices: 78873438--78873724 Score: 357
Period size: 140 Copynumber: 2.0 Consensus size: 141
78873428 CATTGTTGTT
* * * *
78873438 ATGTGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAAATGCTAGTGTAAGA
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATGATG--ATGCTAGTGTAAGA
** * * *
78873503 CATGTCTGGGACATGCATCGGCATTGAAAGAGACGAGAGCTAGTGTAAGACATGTTTGGGACATG
64 CATGTCTGGGACATGCATCGGCACAGAAAGAGACGAGAGCCAGTGTAAGACATATCTGGGACATG
*
78873568 CATCGGCCTCGAG
129 CATCGGCATCGAG
*
78873581 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGA-GATG-TGCTAGTGTAAGAC
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATGATGATGCTAGTGTAAGAC
* * * *
78873644 ATGTCTGGGACATGCATCGGCACAGATA-TG-TGAGAGCCAGTGTAAGACCATATCTGGGATATG
65 ATGTCTGGGACATGCATCGGCACAGAAAGAGACGAGAGCCAGTGTAAGA-CATATCTGGGACAT-
*
78873707 GCATCGGCATCGAT
128 GCATCGGCATCGAG
78873721 ATGT
1 ATGT
78873725 GTAAGGTTTC
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
138 15 0.12
139 12 0.10
140 55 0.44
143 42 0.34
144 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (141 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGATGCTAGTGTAAGACA
TGTCTGGGACATGCATCGGCACAGAAAGAGACGAGAGCCAGTGTAAGACATATCTGGGACATGCA
TCGGCATCGAG
Found at i:78884839 original size:12 final size:13
Alignment explanation
Indices: 78884803--78884840 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
78884793 AAATATTTGA
78884803 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
78884816 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
78884830 CTTG-TCTTAAT
1 CTTGTTCTTAAT
78884841 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:78886961 original size:44 final size:44
Alignment explanation
Indices: 78886898--78886988 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
78886888 CGCCTCTCTC
*
78886898 CTAGCAAAGTTTGGTTTGGTCCCTTGCAATGCATGAATTTTTAA
1 CTAGCAAAGTTTGGTTTGGTCCCTTACAATGCATGAATTTTTAA
78886942 CTAGCAAAGTTTGGTTTGGTCCCTTACAATGCATGAATTTTTAA
1 CTAGCAAAGTTTGGTTTGGTCCCTTACAATGCATGAATTTTTAA
78886986 CTA
1 CTA
78886989 TCTTGCATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (44 bp):
CTAGCAAAGTTTGGTTTGGTCCCTTACAATGCATGAATTTTTAA
Found at i:78887889 original size:27 final size:27
Alignment explanation
Indices: 78887849--78887961 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
78887839 TGTCTCATTG
*
78887849 GACTATCTCGTGTTTAACATCCTGTCA
1 GACTATCCCGTGTTTAACATCCTGTCA
* * *
78887876 GACTATCCCTTGTTTAGCATCCTATCA
1 GACTATCCCGTGTTTAACATCCTGTCA
* * *
78887903 GACTATCCCATGTTTAACATCTTGTTA
1 GACTATCCCGTGTTTAACATCCTGTCA
* * *
78887930 GACTATTCAGTGTTTAACGT-CTCGTCA
1 GACTATCCCGTGTTTAACATCCT-GTCA
78887957 GACTA
1 GACTA
78887962 ACTATGATGC
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 69 0.99
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (27 bp):
GACTATCCCGTGTTTAACATCCTGTCA
Found at i:78888564 original size:22 final size:20
Alignment explanation
Indices: 78888506--78888566 Score: 52
Period size: 22 Copynumber: 2.9 Consensus size: 20
78888496 TACCAAATCA
78888506 TAAATA-ATCAAAAATTTAAT
1 TAAATATAT-AAAAATTTAAT
* * *
78888526 TAAAAATATTTACAATTATAATT
1 TAAATATA-TAAAAATT-TAA-T
78888549 TAAATATATAAAAATTTA
1 TAAATATATAAAAATTTA
78888567 TCAAAACCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 5 0.16
21 8 0.26
22 10 0.32
23 8 0.26
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAATATATAAAAATTTAAT
Found at i:78896476 original size:13 final size:13
Alignment explanation
Indices: 78896458--78896483 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78896448 ACTGTGGATT
78896458 TTGGTTTTAAAGA
1 TTGGTTTTAAAGA
78896471 TTGGTTTTAAAGA
1 TTGGTTTTAAAGA
78896484 AACAATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TTGGTTTTAAAGA
Found at i:78903444 original size:29 final size:29
Alignment explanation
Indices: 78903410--78903483 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
78903400 TAATCAATCG
* * *
78903410 CACACACTTAGTGCCATGCACTTTAAACT
1 CACACACTTAGTGCCATACAATTTAAACC
**
78903439 CACACACTTAGTGCTGTACAATTTAAACC
1 CACACACTTAGTGCCATACAATTTAAACC
*
78903468 CGCACACTTAGTGCCA
1 CACACACTTAGTGCCA
78903484 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CACACACTTAGTGCCATACAATTTAAACC
Found at i:78907596 original size:29 final size:29
Alignment explanation
Indices: 78907562--78907635 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
78907552 TAATCAACCA
*
78907562 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
*
78907591 CGCACACTTAGTGCCATGCATTTCAAATT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
78907620 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
78907636 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.07
29 38 0.93
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:78920415 original size:11 final size:11
Alignment explanation
Indices: 78920382--78920417 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
78920372 TGAATTGTAG
*
78920382 TAGTTAACAGA
1 TAGTTAACAGT
78920393 TAGTTAATCAGT
1 TAGTTAA-CAGT
78920405 TAGTTAACAGT
1 TAGTTAACAGT
78920416 TA
1 TA
78920418 CTCATCATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (11 bp):
TAGTTAACAGT
Found at i:78928007 original size:70 final size:70
Alignment explanation
Indices: 78927894--78928533 Score: 643
Period size: 70 Copynumber: 9.1 Consensus size: 70
78927884 TCTTCCCAAA
* * * * * * * * *
78927894 AAAATAGTTAGCGAGACCTCAATCTCTCACCTGTGATCTTAAGGCTTGTAGGTTCAATACTGCAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
78927959 CCTCC
66 CCTCC
* * * * * * * * * * * *
78927964 AAAATAGATAGCGAGAGCTTAAGTTCACAGCTATAATATTAAGGCTTGCATGTTCAACACCATAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
*
78928029 CCTCT
66 CCTCC
* * * * * *
78928034 AAAAAAATTAGCGAGAGCTCAAGCTCCCAACTGTGATTTTAAGGCTCGCAAGTTCAACATCATAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
78928099 CCTCC
66 CCTCC
* * * *
78928104 AAAATAGTTAGTGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAACACAGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
78928169 CCTCC
66 CCTCC
* * * *
78928174 AAAATAGTTAGTGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCACAGGTTCAACACCGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
*
78928239 CCTCT
66 CCTCC
* ** * *
78928244 AAAATAGTTAGCGATAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCACAGGTTCAACACCTTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
78928309 CCTCC
66 CCTCC
* ** * * ** *
78928314 AAAATAGTTAGCAAGAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCGCAAGTTCAATACCACAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
78928379 CCTCC
66 CCTCC
** * * * **
78928384 AAAATAGTTAGCGAGAGCTCAAGCTCTTAGA-TCTGATCTTAAGGCTCGCAAGTTCAATACCACA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCA-ACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTA
* *
78928448 ACCTCT
65 GCCTCC
* * * * ** * *
78928454 AAAACAGTTAGCGAGAGCTCAAGCTCTCAGCTGTGATCTTAAGGCTCACAAATTCAAGCACTGCA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAA-CACCGTA
*
78928519 GCCTTC
65 GCCTCC
78928525 AAAATAGTT
1 AAAATAGTT
78928534 GAAGCTCGTG
Statistics
Matches: 482, Mismatches: 85, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
70 467 0.97
71 15 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (70 bp):
AAAATAGTTAGCGAGAGCTCAAGCTCCCAACTGTGATCTTAAGGCTCGCAGGTTCAACACCGTAG
CCTCC
Found at i:78928257 original size:210 final size:210
Alignment explanation
Indices: 78927894--78928533 Score: 773
Period size: 210 Copynumber: 3.0 Consensus size: 210
78927884 TCTTCCCAAA
* * * ** * *
78927894 AAAATAGTTAGCGAGACCTCAATCTCTCACCTGTGATCTTAAGGCTTGTAGGTTCAATACTGCAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
* * * * * * * *
78927959 CCTCCAAAATAGATAGCGAGAGCTTAAGTTCAC-AGCTATAATATTAAGGCTTGCATGTTCAACA
66 CCTCCAAAATAGTTAGCGAGAGCTCAAGCTC-CTAACTATGATCTTAAGGCTCGCAAGTTCAACA
* * * *
78928023 CCATAACCTCTAAAAAAATTAGCGAGAGCTCAAGCTCCCAACTGTGATTTTAAGGCTCGCAAGTT
130 CCATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGTT
*
78928088 CAACATCATAGCCTCC
195 CAACACCATAGCCTCC
* * *
78928104 AAAATAGTTAGTGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAACACAGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
* * *
78928169 CCTCCAAAATAGTTAGTGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCACAGGTTCAACAC
66 CCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCGCAAGTTCAACAC
* * * * * *
78928234 CGTAGCCTCTAAAATAGTTAGCGATAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCACAGGTTC
131 CATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGTTC
*
78928299 AACACCTTAGCCTCC
196 AACACCATAGCCTCC
* ** * *
78928314 AAAATAGTTAGCAAGAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCGCAAGTTCAATACCA-CA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATA-CAGCA
* * * *
78928378 ACCTCCAAAATAGTTAGCGAGAGCTCAAGCTCTTAGA-TCTGATCTTAAGGCTCGCAAGTTCAAT
65 GCCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTA-ACTATGATCTTAAGGCTCGCAAGTTCAAC
* * * *
78928442 ACCACAACCTCTAAAACAGTTAGCGAGAGCTCAAGCTCTCAGCTGTGATCTTAAGGCTCACAAAT
129 ACCATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGT
*** *
78928507 TCAAGCACTGCAGCCTTC
194 TCAA-CACCATAGCCTCC
78928525 AAAATAGTT
1 AAAATAGTT
78928534 GAAGCTCGTG
Statistics
Matches: 366, Mismatches: 60, Indels: 7
0.85 0.14 0.02
Matches are distributed among these distances:
209 1 0.00
210 344 0.94
211 21 0.06
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (210 bp):
AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
CCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCGCAAGTTCAACAC
CATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCACAAGTTC
AACACCATAGCCTCC
Found at i:78928637 original size:25 final size:25
Alignment explanation
Indices: 78928607--78928656 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78928597 ATTTGCTTAA
78928607 GTTAAAATTTTGCTCAAGTTCACGG
1 GTTAAAATTTTGCTCAAGTTCACGG
78928632 GTTAAAATTTTGCTCAAGTTCACGG
1 GTTAAAATTTTGCTCAAGTTCACGG
78928657 AGAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (25 bp):
GTTAAAATTTTGCTCAAGTTCACGG
Done.