Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 248 of 318
Found at i:78931717 original size:20 final size:20
Alignment explanation
Indices: 78931676--78931725 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
78931666 TGTCAATCCT
* *
78931676 ATGAATAGTGGGGTTAAGTC
1 ATGAATAGTGGAGTGAAGTC
78931696 ATGAATAGTGGAGTCGAA-TC
1 ATGAATAGTGGAGT-GAAGTC
*
78931716 ATGAACAGTG
1 ATGAATAGTG
78931726 ATAATATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (20 bp):
ATGAATAGTGGAGTGAAGTC
Found at i:78934930 original size:69 final size:69
Alignment explanation
Indices: 78934819--78934960 Score: 266
Period size: 69 Copynumber: 2.1 Consensus size: 69
78934809 TTTTTCGGGT
*
78934819 TAGTATACAACCCGTGTACATGGACGAGAAAAGCATACATACATGTTGCGCCTATCTGATAGGCT
1 TAGTATACAACCCGTGTACATAGACGAGAAAAGCATACATACATGTTGCGCCTATCTGATAGGCT
78934884 CAAC
66 CAAC
78934888 TAGTATACAACCCGTGTACATAGACGAGAAAAGCATACATACATGTTGCGCCTATCTGATAGGCT
1 TAGTATACAACCCGTGTACATAGACGAGAAAAGCATACATACATGTTGCGCCTATCTGATAGGCT
*
78934953 CAAG
66 CAAC
78934957 TAGT
1 TAGT
78934961 TGAGCCTATC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (69 bp):
TAGTATACAACCCGTGTACATAGACGAGAAAAGCATACATACATGTTGCGCCTATCTGATAGGCT
CAAC
Found at i:78934987 original size:27 final size:27
Alignment explanation
Indices: 78934932--78934994 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
78934922 ATACATACAT
* * * *
78934932 GTTGCGCCTATCTGATAGGCTCAAGTA
1 GTTGAGCCTATCTGACAGGCACAACTA
*
78934959 GTTGAGCCTATCTGACAGGCACGACTA
1 GTTGAGCCTATCTGACAGGCACAACTA
*
78934986 GTTGTGCCT
1 GTTGAGCCT
78934995 TCTTGGTAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.29
Consensus pattern (27 bp):
GTTGAGCCTATCTGACAGGCACAACTA
Found at i:78938671 original size:33 final size:34
Alignment explanation
Indices: 78938634--78938711 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 34
78938624 ATAAAATATG
*
78938634 GCGGTGGATATGGAC-CAGGAGGAGTAGAGTACA-
1 GCGGTGGATACGG-CTCAGGAGGAGTAGAGTACAT
* *
78938667 GCGGTGGATACGGCTCTGGAGGAGTTGAGTACAT
1 GCGGTGGATACGGCTCAGGAGGAGTAGAGTACAT
78938701 G-GGTGGATACG
1 GCGGTGGATACG
78938712 AGCCGGAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
32 1 0.03
33 38 0.95
34 1 0.03
ACGTcount: A:0.24, C:0.13, G:0.44, T:0.19
Consensus pattern (34 bp):
GCGGTGGATACGGCTCAGGAGGAGTAGAGTACAT
Found at i:78938907 original size:12 final size:12
Alignment explanation
Indices: 78938882--78938916 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
78938872 AGAGTGTAGT
*
78938882 TCCGGCTTTGGC
1 TCCGGCTCTGGC
*
78938894 TCCTGCTCTGGC
1 TCCGGCTCTGGC
78938906 TCCGGCTCTGG
1 TCCGGCTCTGG
78938917 TGCATGATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.37, G:0.31, T:0.31
Consensus pattern (12 bp):
TCCGGCTCTGGC
Found at i:78941307 original size:116 final size:116
Alignment explanation
Indices: 78940868--78941315 Score: 746
Period size: 115 Copynumber: 3.9 Consensus size: 116
78940858 ATACTAACAC
* *
78940868 AAAATAACTATAAAATTA-TTTTTTTAAAATAAATTACTAAAAAAAATCACAATACACTAATACA
1 AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAT--A
78940932 CACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
64 CACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
78940983 AAAATAGCTATAAAAATATTTTTTTT-AAATATATTACTAAAAAAAATCACAATACACTAATACA
1 AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATACA
* *
78941047 CTAAACCACTAAACACTAACAATTTATATAATCTAACCTTAAATTACTAAT
66 CTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
78941098 AAAATAGCTATAAAACTATTTTTTTTAAAATATATTACT-AAAAAAATTACAATACACTAATACA
1 AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATACA
*
78941162 CCAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 CTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
78941213 AAAATAGCTATAAAATTATTTTTTTTAAAAATATATTACT-AAAAAAATCACAATACACTAATAC
1 AAAATAGCTATAAAATTATTTTTTTT-AAAATATATTACTAAAAAAAATCACAATACACTAATAC
*
78941277 ACTAAACTACTAAACACTAACAATTTATATAACCTAATC
65 ACTAAACCACTAAACACTAACAATTTATATAACCTAATC
78941316 AACTATAAAA
Statistics
Matches: 314, Mismatches: 14, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
113 25 0.08
115 197 0.63
116 92 0.29
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (116 bp):
AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAATACA
CTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:78941590 original size:3 final size:3
Alignment explanation
Indices: 78941584--78941660 Score: 102
Period size: 3 Copynumber: 25.3 Consensus size: 3
78941574 TTACCCTTTT
*
78941584 TTC TTC TTC TTC TTC TT- TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* *
78941631 TTCC TTC TTC TTCC TTC TTT TTC TCC TTC T
1 TT-C TTC TTC TT-C TTC TTC TTC TTC TTC T
78941661 CCTTTCTCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.03
3 57 0.88
4 6 0.09
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:78941625 original size:32 final size:33
Alignment explanation
Indices: 78941584--78941666 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 33
78941574 TTACCCTTTT
* *
78941584 TTCTTCTTCTTCTTCTTTTCTTTTTCTT-CTTC
1 TTCTTCTTCTTCTTCTTTCCTTCTTCTTCCTTC
78941616 TTCTTCTTCTTCTTC-TTCCTTCTTCTTCCTTC
1 TTCTTCTTCTTCTTCTTTCCTTCTTCTTCCTTC
* * *
78941648 TTTTTCTCCTTCTCCTTTC
1 TTCTTCTTCTTCTTCTTTC
78941667 TCTCCTTTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
31 10 0.23
32 31 0.70
33 3 0.07
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (33 bp):
TTCTTCTTCTTCTTCTTTCCTTCTTCTTCCTTC
Found at i:78941883 original size:27 final size:27
Alignment explanation
Indices: 78941845--78941896 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
78941835 AGGTGGGGGT
*
78941845 GTCGTGCCTACCTGTCAGGCACGACTA
1 GTCGTGCCTACCTGACAGGCACGACTA
*
78941872 GTCGTGCCTACCTGACAGGCTCGAC
1 GTCGTGCCTACCTGACAGGCACGAC
78941897 CCGTTTCGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.21
Consensus pattern (27 bp):
GTCGTGCCTACCTGACAGGCACGACTA
Found at i:78942718 original size:24 final size:22
Alignment explanation
Indices: 78942675--78942724 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 22
78942665 TGTTATAAAA
*
78942675 ATTAATTAATATAATTAAACCT
1 ATTAATTAATAAAATTAAACCT
78942697 ATTAATTATATAAAAATTAAACCT
1 ATTAATTA-AT-AAAATTAAACCT
78942721 ATTA
1 ATTA
78942725 CTCAAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 8 0.32
23 2 0.08
24 15 0.60
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTAATTAATAAAATTAAACCT
Found at i:78942752 original size:36 final size:37
Alignment explanation
Indices: 78942654--78942790 Score: 99
Period size: 36 Copynumber: 3.8 Consensus size: 37
78942644 CGGAGTGGCC
*
78942654 CAAATATATTATGTTATAAAAATT-AATTAATATAAT
1 CAAATATATTATGTTATAAAAATTAAACTAATATAAT
* ** *
78942690 TAAACCTATTAAT-TATATAAAAATTAAACCT-AT-TACT
1 CAAATATATT-ATGT-TATAAAAATTAAA-CTAATATAAT
*
78942727 CAAATATATTATGTTATAAAAATT-AA-TTATATAAT
1 CAAATATATTATGTTATAAAAATTAAACTAATATAAT
* * *
78942762 TAAATCTATTAAT-TATATAACAATTAAAC
1 CAAATATATT-ATGT-TATAAAAATTAAAC
78942791 CTATTACCCA
Statistics
Matches: 78, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
33 1 0.01
34 2 0.03
35 14 0.18
36 31 0.40
37 25 0.32
38 4 0.05
39 1 0.01
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.40
Consensus pattern (37 bp):
CAAATATATTATGTTATAAAAATTAAACTAATATAAT
Found at i:78942787 original size:72 final size:73
Alignment explanation
Indices: 78942652--78942802 Score: 268
Period size: 72 Copynumber: 2.1 Consensus size: 73
78942642 CCCGGAGTGG
78942652 CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
1 CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
78942717 ACCTATTA
66 ACCTATTA
* * *
78942725 CTCAAATATATTATGTTATAAAAATTAATT-ATATAATTAAATCTATTAATTATATAACAATTAA
1 CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
78942789 ACCTATTA
66 ACCTATTA
78942797 CCCAAA
1 CCCAAA
78942803 ACCTAAAAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
72 45 0.61
73 29 0.39
ACGTcount: A:0.50, C:0.11, G:0.01, T:0.38
Consensus pattern (73 bp):
CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
ACCTATTA
Found at i:78943046 original size:34 final size:34
Alignment explanation
Indices: 78943003--78943070 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
78942993 AAAGGAATAG
*
78943003 GATGACATGAAATCACAATTTCATATAATCTTTT
1 GATGACATGAAATCACAATTTCACATAATCTTTT
*
78943037 GATGACATGAAATTACAATTTCACATAATCTTTT
1 GATGACATGAAATCACAATTTCACATAATCTTTT
78943071 CTCCCCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (34 bp):
GATGACATGAAATCACAATTTCACATAATCTTTT
Found at i:78954947 original size:31 final size:31
Alignment explanation
Indices: 78954912--78954976 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
78954902 GTTTGGGTTA
* * *
78954912 CAAATTGAATGTTGAAGCCAAACTT-AGGTAC
1 CAAATTGAATATTGAA-ACAAAATTCAGGTAC
78954943 CAAATTGAATATTGAAACAAAATTCAGGTAC
1 CAAATTGAATATTGAAACAAAATTCAGGTAC
78954974 CAA
1 CAA
78954977 GTGGTATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (31 bp):
CAAATTGAATATTGAAACAAAATTCAGGTAC
Found at i:78955130 original size:22 final size:22
Alignment explanation
Indices: 78955105--78955160 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
78955095 TTAGGAAGAC
**
78955105 TTTAAAATTTAAAATCATTCTT
1 TTTAAAAAGTAAAATCATTCTT
78955127 TTTAAAAAGTAAAATCATTCTT
1 TTTAAAAAGTAAAATCATTCTT
*
78955149 TTCAAAAAGTAA
1 TTTAAAAAGTAA
78955161 CATATATAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTAAAAAGTAAAATCATTCTT
Found at i:78959912 original size:6 final size:5
Alignment explanation
Indices: 78959877--78959912 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
78959867 ATATCTTGAG
78959877 AAATA AAA-A AAATA AAATA AAATA AAATA AACATA A
1 AAATA AAATA AAATA AAATA AAATA AAATA AA-ATA A
78959913 CTTTTTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.14
5 21 0.72
6 4 0.14
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:78964926 original size:13 final size:14
Alignment explanation
Indices: 78964908--78964940 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
78964898 CAAAAACAAC
78964908 TTAATAAG-CTTAA
1 TTAATAAGACTTAA
78964921 TTAAT-AGACTTAA
1 TTAATAAGACTTAA
78964934 TTAATAA
1 TTAATAA
78964941 ACAAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 15 0.83
14 1 0.06
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (14 bp):
TTAATAAGACTTAA
Found at i:78964966 original size:28 final size:28
Alignment explanation
Indices: 78964931--78964995 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
78964921 TTAATAGACT
**
78964931 TAATTAATAAACAAATTTAATGCTTAAC
1 TAATTAATAAACAAATTTAACACTTAAC
* *
78964959 TAATTAATAACCACATTTAACACTTAAC
1 TAATTAATAAACAAATTTAACACTTAAC
78964987 TAACTTAAT
1 TAA-TTAAT
78964996 TAATAAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 27 0.84
29 5 0.16
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (28 bp):
TAATTAATAAACAAATTTAACACTTAAC
Found at i:78975832 original size:3 final size:3
Alignment explanation
Indices: 78975819--78975896 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
78975809 GAGGGCATAT
78975819 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
78975863 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A
78975897 ATAAAAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
2 7 0.11
3 43 0.70
4 9 0.15
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:78975843 original size:12 final size:12
Alignment explanation
Indices: 78975819--78975901 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
78975809 GAGGGCATAT
78975819 ATAATAT-AATA
1 ATAATATAAATA
78975830 ATAATATAAATA
1 ATAATATAAATA
78975842 ATAATATATACATGA
1 ATAATATA-A-AT-A
78975857 GA-AATA-ATAATA
1 -ATAATATA-AATA
78975869 ATAATATAAATA
1 ATAATATAAATA
* *
78975881 ATAGTAAAAATA
1 ATAATATAAATA
78975893 ATAA-ATAAA
1 ATAATATAAA
78975902 AAAATAAAAC
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
11 12 0.20
12 34 0.56
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:78975863 original size:21 final size:18
Alignment explanation
Indices: 78975824--78975883 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
78975814 CATATATAAT
*
78975824 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
78975842 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
78975863 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
78975881 ATA
1 ATA
78975884 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:78975892 original size:27 final size:27
Alignment explanation
Indices: 78975819--78975896 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 27
78975809 GAGGGCATAT
* *
78975819 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
78975845 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
78975869 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
78975896 A
1 A
78975897 ATAAAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
23 2 0.05
24 10 0.25
25 11 0.28
26 4 0.10
27 10 0.25
28 3 0.08
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:78976763 original size:21 final size:21
Alignment explanation
Indices: 78976739--78976803 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
78976729 TCCACTGAAA
78976739 CTTCAAGGAGATCTGCTGTAG
1 CTTCAAGGAGATCTGCTGTAG
* ** ** * *
78976760 CTTCGATTA-ATCCACTGAAA
1 CTTCAAGGAGATCTGCTGTAG
*
78976780 CTTCAAGGAGATCTGCTGTGG
1 CTTCAAGGAGATCTGCTGTAG
78976801 CTT
1 CTT
78976804 TTAGCTGCTC
Statistics
Matches: 28, Mismatches: 15, Indels: 2
0.62 0.33 0.04
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (21 bp):
CTTCAAGGAGATCTGCTGTAG
Found at i:78977087 original size:86 final size:87
Alignment explanation
Indices: 78976850--78977192 Score: 442
Period size: 86 Copynumber: 4.0 Consensus size: 87
78976840 TGATTTTCAA
* * ** **
78976850 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCAT-TATTGATCTGTTTCCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCT-TCAATCTGTTTCCCTACTGCTTAG
* * * * *
78976914 GTGTTTAAGATCTTGTAAAATCAA
65 GGGGTTAAGATC-TGTAAATTTAG
* * *
78976938 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATC-GCATTCGATCTGTTTCCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATC-TTCAATCTGTTTCCCTACTGCTTAG
78977002 GGGGTTAAGATCTGTAAATTTAG
65 GGGGTTAAGATCTGTAAATTTAG
* * *
78977025 TCTGTTACCCTACTGCTT-GGGTTTTAAGACTCATCATCTTCAATCTGCTTCCCTACTGCTTA-G
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
* *
78977088 GGGTTGAGGTCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTTAG
*
78977110 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAATCTGTTTCTCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
*
78977175 GGGTTGAGATCTGTAAAT
66 GGGTTAAGATCTGTAAAT
78977193 CTTCAATCTG
Statistics
Matches: 227, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
85 38 0.17
86 78 0.34
87 44 0.19
88 66 0.29
89 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTTAG
Found at i:78977174 original size:44 final size:45
Alignment explanation
Indices: 78976845--78977202 Score: 217
Period size: 44 Copynumber: 8.2 Consensus size: 45
78976835 ATATTTGATT
* * * * **
78976845 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGT-CAT-
1 TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTCATACATC
** * ** *
78976888 TATTGATCTGTTTCCCTACTGCTTAGGTGTTTAAGATCTTGTA-A-A
1 T-TCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGA-CTCATACATC
* * * * *
78976933 ATCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCAT-C-GC
1 TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTCATACATC
* * * *
78976976 ATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTGTAAAT-
1 -TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTC-ATACATC
* * *
78977021 TT-AGTCTGTTACCCTACTGCTT-GGGTTTTAAGACTCAT-CATC
1 TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTCATACATC
* * * * * *
78977063 TTCAATCTGCTTCCCTACTGCTTAGGGGTTGAGGTCT-GTAAAT-
1 TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTCATACATC
** *
78977106 TT-AGCCTGTTACCCTACTGCTTAGGGGTTTAAGACTCAT-CATC
1 TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTCATACATC
* * * * *
78977149 TTCAATCTGTTTCTCTACTGCTTAGGGGGTTGAGA-TCTGTAAATC
1 TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTC-ATACATC
78977194 TTCAATCTG
1 TTCAATCTG
78977203 CTTCACTGCA
Statistics
Matches: 236, Mismatches: 59, Indels: 38
0.71 0.18 0.11
Matches are distributed among these distances:
41 2 0.01
42 41 0.17
43 50 0.21
44 125 0.53
45 18 0.08
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (45 bp):
TTCAATCTGTTTCCCTACTGCTTAGGGGTTTAAGACTCATACATC
Found at i:78977449 original size:88 final size:86
Alignment explanation
Indices: 78977331--78977504 Score: 233
Period size: 88 Copynumber: 2.0 Consensus size: 86
78977321 TGTAAATTTG
* ** *
78977331 GCTTGTTACCCTACTGCTTAGGGGGCTAAAGCTCATTATTTTCGATCTATTTCCCTAATGCTTA-
1 GCTTGTTACCCTACTGCTTAGAGGGCTAAAGCTCATTACCTTCGATCTATTCCCCTAATGCTTAT
78977395 GGGTGATAAGATCTATGAACTTCA
66 GGG-G-TAAGATCTATGAA-TTCA
* * * *
78977419 GCTTGTTACCCTACTGCTTAGAGGGTTAAAGCTCGTTGCCTTCGATCTATTCCCCTACTGCTTAT
1 GCTTGTTACCCTACTGCTTAGAGGGCTAAAGCTCATTACCTTCGATCTATTCCCCTAATGCTTAT
*
78977484 GGGGTAAGATCTGTGAATTCA
66 GGGGTAAGATCTATGAATTCA
78977505 CTGATTCTAG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
86 4 0.05
87 12 0.16
88 57 0.75
89 3 0.04
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (86 bp):
GCTTGTTACCCTACTGCTTAGAGGGCTAAAGCTCATTACCTTCGATCTATTCCCCTAATGCTTAT
GGGGTAAGATCTATGAATTCA
Found at i:78985550 original size:19 final size:20
Alignment explanation
Indices: 78985526--78985572 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
78985516 AGAGAAAGTT
78985526 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
78985545 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
78985565 -AATGCAAA
1 TAATGCAAA
78985573 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:78988133 original size:39 final size:40
Alignment explanation
Indices: 78987993--78988134 Score: 96
Period size: 39 Copynumber: 3.5 Consensus size: 40
78987983 AGTAAATAAT
* * *
78987993 AATACTATATATAAATATATATATGTATA-TAATAGAAATACAC
1 AATACTATATATAAATAT-TAAAT-TAAAGTAATACAAA-A-AC
* * * *
78988036 ACTACTATATAATAATAATAATAAA-TATAGAAATACAAAAAGC
1 AATACTATAT-AT-A-AATATTAAATTAAAGTAATACAAAAA-C
*
78988079 AA-A-TATAATAAAAATATTAAATTAAAGTAATA-AAAAAC
1 AATACTAT-ATATAAATATTAAATTAAAGTAATACAAAAAC
78988117 AATACTATATATAAATAT
1 AATACTATATATAAATAT
78988135 ATATATACAT
Statistics
Matches: 79, Mismatches: 11, Indels: 22
0.71 0.10 0.20
Matches are distributed among these distances:
38 3 0.04
39 23 0.29
40 12 0.15
41 4 0.05
42 4 0.05
43 16 0.20
44 9 0.11
45 4 0.05
46 4 0.05
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (40 bp):
AATACTATATATAAATATTAAATTAAAGTAATACAAAAAC
Found at i:78988385 original size:3 final size:3
Alignment explanation
Indices: 78988372--78988452 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
78988362 GAGGGCATAT
78988372 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* * *
78988416 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA AAA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
78988453 ATAAAACAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
2 7 0.11
3 44 0.71
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:78988393 original size:9 final size:9
Alignment explanation
Indices: 78988372--78988457 Score: 61
Period size: 9 Copynumber: 9.1 Consensus size: 9
78988362 GAGGGCATAT
78988372 ATAATAT-A
1 ATAATATAA
78988380 ATAATATAA
1 ATAATATAA
*
78988389 ATAATAATAT
1 ATAAT-ATAA
*
78988399 ATACATGAGAA
1 ATA-AT-ATAA
78988410 ATAATA-ATA
1 ATAATATA-A
78988419 ATAATATAA
1 ATAATATAA
78988428 ATAATAGTAAAA
1 ATAATA-T--AA
*
78988440 ATAATAAAA
1 ATAATATAA
78988449 ATAA-ATAA
1 ATAATATAA
78988457 A
1 A
78988458 ACAAAGCTCT
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
8 12 0.19
9 27 0.42
10 10 0.16
11 7 0.11
12 8 0.12
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (9 bp):
ATAATATAA
Found at i:78988413 original size:21 final size:18
Alignment explanation
Indices: 78988372--78988433 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
78988362 GAGGGCATAT
*
78988372 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
78988389 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
78988410 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
78988428 ATAATA
1 ATAATA
78988434 GTAAAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.13
18 12 0.31
19 5 0.13
20 5 0.13
21 12 0.31
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Found at i:78988442 original size:27 final size:27
Alignment explanation
Indices: 78988370--78988456 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 27
78988360 GAGAGGGCAT
* *
78988370 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* *
78988397 ATATACAT--GAG-AAATAATAATAATA
1 ATATAAATAATAGTAAA-AATAATAATA
78988422 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
78988448 A-ATAAATAA
1 ATATAAATAA
78988457 AACAAAGCTC
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
23 2 0.04
24 10 0.20
25 15 0.31
26 4 0.08
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:78988451 original size:39 final size:38
Alignment explanation
Indices: 78988372--78988456 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 38
78988362 GAGGGCATAT
* * *
78988372 ATAATATAATAATATAAATAATAATATATACATGAGAA
1 ATAATATAATAATATAAATAATAAAAAATACATGAAAA
78988410 ATAATAATAATAATATAAATAATAGTAAAAATA-AT-AAAA
1 ATAAT-ATAATAATATAAATAATA--AAAAATACATGAAAA
78988449 ATAA-ATAA
1 ATAATATAA
78988457 AACAAAGCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
37 4 0.10
38 5 0.12
39 25 0.61
40 2 0.05
41 5 0.12
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (38 bp):
ATAATATAATAATATAAATAATAAAAAATACATGAAAA
Found at i:78994478 original size:28 final size:28
Alignment explanation
Indices: 78994438--78994495 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
78994428 GTTCCGATAT
78994438 CATGGAGATGTTATTGATGCATTCATTC
1 CATGGAGATGTTATTGATGCATTCATTC
78994466 CATGGAGATGTTATTGATGCATTCATTC
1 CATGGAGATGTTATTGATGCATTCATTC
78994494 CA
1 CA
78994496 GCAAACAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (28 bp):
CATGGAGATGTTATTGATGCATTCATTC
Found at i:78998593 original size:3 final size:3
Alignment explanation
Indices: 78998576--78998620 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
78998566 AAAGTAGAAT
* *
78998576 AGA AGA AAA ATA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
78998621 GGGAGGGAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:79002692 original size:22 final size:21
Alignment explanation
Indices: 79002664--79002715 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
79002654 AATAGAAACG
79002664 AATAGAATTCTAGTTCTCAAAA
1 AATAGAATTCTA-TTCTCAAAA
* *
79002686 AATAGAACT-TATTCTTAAAA
1 AATAGAATTCTATTCTCAAAA
79002706 AATA-AATTCT
1 AATAGAATTCT
79002716 CACTACTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 3 0.12
20 13 0.50
21 2 0.08
22 8 0.31
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.35
Consensus pattern (21 bp):
AATAGAATTCTATTCTCAAAA
Found at i:79005619 original size:25 final size:25
Alignment explanation
Indices: 79005562--79005621 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
79005552 GAGCTGTAAA
*
79005562 CGGTAAGCTCATATAAGCTGAATAT
1 CGGTAAGCTCATACAAGCTGAATAT
** * *
79005587 CGACAAGCTCATACGAGTTGAATAT
1 CGGTAAGCTCATACAAGCTGAATAT
79005612 CGGTAAGCTC
1 CGGTAAGCTC
79005622 TCTTGAATTA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (25 bp):
CGGTAAGCTCATACAAGCTGAATAT
Found at i:79011643 original size:12 final size:12
Alignment explanation
Indices: 79011626--79011655 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
79011616 AATAAATGTA
79011626 ACACGGCCTAGC
1 ACACGGCCTAGC
*
79011638 ACACGGCCTGGC
1 ACACGGCCTAGC
79011650 ACACGG
1 ACACGG
79011656 GCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:79011835 original size:21 final size:20
Alignment explanation
Indices: 79011795--79011837 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
79011785 CCCCTACAGC
*
79011795 TTTGAAAATTTGCAATGTTT
1 TTTGAAAATTTACAATGTTT
79011815 TTTGAAAAATTCTACAA-GTTT
1 TTTG-AAAATT-TACAATGTTT
79011836 TT
1 TT
79011838 GATTTAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.49
Consensus pattern (20 bp):
TTTGAAAATTTACAATGTTT
Found at i:79015645 original size:17 final size:17
Alignment explanation
Indices: 79015625--79015663 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
79015615 AGTCTTAAAG
79015625 GATTTACAATCTTAGAA
1 GATTTACAATCTTAGAA
**
79015642 GATTTTTAATCTTAGAA
1 GATTTACAATCTTAGAA
79015659 GATTT
1 GATTT
79015664 GATTTCGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.44
Consensus pattern (17 bp):
GATTTACAATCTTAGAA
Found at i:79021223 original size:49 final size:49
Alignment explanation
Indices: 79021044--79021223 Score: 177
Period size: 49 Copynumber: 3.7 Consensus size: 49
79021034 TGGGATAAGA
* * **
79021044 TGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAGCA-C-ATCAA
1 TGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCGG
* * ** * *
79021092 AGTCGATGCCATGTTCCAGACAGGTCTTACACTAACTTTCATATATCGAG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCG-G
* * * * * *
79021142 -GCCGATGTCGTGTCCCAGACAGGTCTTGCACTGGCTCTCATCTATTGG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
79021190 TGTCGATGCCATGTCCCAGACAGGTCTTACACTG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTG
79021224 ACACACAACA
Statistics
Matches: 104, Mismatches: 24, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 15 0.14
48 20 0.19
49 69 0.66
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
Found at i:79021390 original size:46 final size:44
Alignment explanation
Indices: 79021287--79021408 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 44
79021277 TCTCGAGGCT
*
79021287 GATGCATGTCCCAAACATGTT-TTACACTAGCTTCGTCTCAATGTC
1 GATGCATGTCCCAGACAT-TTCTTACACTAGCTTC-TCTCAATGTC
*
79021332 TATGCATGTCCCAGACATTTCTTACACTAGCTT-TCAT-AATGTAGCC
1 GATGCATGTCCCAGACATTTCTTACACTAGCTTCTC-TCAATGT---C
*
79021378 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATTTCTTACACTAGC
79021409 ACATATATCA
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
43 7 0.10
44 3 0.04
45 28 0.41
46 30 0.44
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (44 bp):
GATGCATGTCCCAGACATTTCTTACACTAGCTTCTCTCAATGTC
Found at i:79027418 original size:24 final size:23
Alignment explanation
Indices: 79027369--79027418 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
79027359 GAGTTACCTG
**
79027369 TTAAACTTAATGAGCTTCCTGTT
1 TTAAACTTAATGAGCTTCCTAAT
* *
79027392 TTAAACTCTTATGAGTTTCCTAAT
1 TTAAACT-TAATGAGCTTCCTAAT
79027416 TTA
1 TTA
79027419 GCCTAGATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (23 bp):
TTAAACTTAATGAGCTTCCTAAT
Found at i:79033633 original size:19 final size:18
Alignment explanation
Indices: 79033585--79033638 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
79033575 TATAATATCG
*
79033585 AAAATCAATGATAAAA-TT
1 AAAATCAAT-TTAAAATTT
79033603 AAAAT-AATTTTAAAATTT
1 AAAATCAA-TTTAAAATTT
79033621 AAAAATCAATTTAAAATT
1 -AAAATCAATTTAAAATT
79033639 AAGATAATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 7 0.23
18 8 0.26
19 14 0.45
20 2 0.06
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATCAATTTAAAATTT
Found at i:79033640 original size:18 final size:18
Alignment explanation
Indices: 79033585--79033640 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
79033575 TATAATATCG
*
79033585 AAAATCAATGATAAAATT-
1 AAAATCAAT-TTAAAATTA
79033603 AAAAT-AATTTTAAAATTTA
1 AAAATCAA-TTTAAAA-TTA
79033622 AAAATCAATTTAAAATTA
1 AAAATCAATTTAAAATTA
79033640 A
1 A
79033641 GATAATAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 7 0.21
18 12 0.36
19 12 0.36
20 2 0.06
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAATCAATTTAAAATTA
Found at i:79041649 original size:16 final size:17
Alignment explanation
Indices: 79041628--79041665 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
79041618 TTCTATATTG
*
79041628 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
79041644 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
79041662 ATTT
1 ATTT
79041666 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:79041754 original size:29 final size:29
Alignment explanation
Indices: 79041721--79041792 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
79041711 ACAAATTCTT
79041721 AATGAACAAGTTCTTCATCGCGAACTCTC
1 AATGAACAAGTTCTTCATCGCGAACTCTC
*
79041750 AATGAACAAGTTCTTTATCGCGAACTCTC
1 AATGAACAAGTTCTTCATCGCGAACTCTC
79041779 AATGAACAAGTTCT
1 AATGAACAAGTTCT
79041793 CCATTTCTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (29 bp):
AATGAACAAGTTCTTCATCGCGAACTCTC
Found at i:79051654 original size:46 final size:46
Alignment explanation
Indices: 79051589--79051814 Score: 292
Period size: 46 Copynumber: 4.9 Consensus size: 46
79051579 TTATCTTTGA
* * * ** *
79051589 CATGATGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGT
* *
79051635 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGT
* *
79051681 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGT
* **
79051727 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTC-CGT
* * *
79051773 CATGTTGTCATGATATCTTTCAACCATGGTCTTACACATTTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTT
79051815 ATTTCAGAAA
Statistics
Matches: 163, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
45 3 0.02
46 157 0.96
47 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGT
Found at i:79051768 original size:21 final size:21
Alignment explanation
Indices: 79051744--79051813 Score: 61
Period size: 21 Copynumber: 3.1 Consensus size: 21
79051734 CCATGGTATC
79051744 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* * *
79051765 TTTCATATCATGTTGTCATGATATC-
1 TTTCA-ACCATG--GTC-TTACA-CA
79051790 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
79051811 TTT
1 TTT
79051814 TATTTCAGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
20 1 0.03
21 11 0.30
22 8 0.22
24 8 0.22
25 8 0.22
26 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:79055593 original size:19 final size:19
Alignment explanation
Indices: 79055569--79055609 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
79055559 TGAGTGGACG
79055569 ATAGTGGACCTTGAATTTC
1 ATAGTGGACCTTGAATTTC
79055588 ATAGTGGACCTTGAATTTC
1 ATAGTGGACCTTGAATTTC
79055607 ATA
1 ATA
79055610 ATTTATTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (19 bp):
ATAGTGGACCTTGAATTTC
Found at i:79063702 original size:20 final size:19
Alignment explanation
Indices: 79063677--79063720 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
79063667 TGGAAAATAA
*
79063677 TTTCTAAAAAATGATTTACT
1 TTTCT-AAAAATAATTTACT
*
79063697 TTTCTAGAAATAATTTACT
1 TTTCTAAAAATAATTTACT
79063716 TTTCT
1 TTTCT
79063721 GGTGTTTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (19 bp):
TTTCTAAAAATAATTTACT
Found at i:79065116 original size:32 final size:32
Alignment explanation
Indices: 79065070--79065130 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
79065060 TGTCAATCAT
*
79065070 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCATAAAACATAATAAA
*
79065102 TTCAATATCTAACAAGCATAAAACATAAT
1 TTCAATATCCAACAAGCATAAAACATAAT
79065131 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.26
Consensus pattern (32 bp):
TTCAATATCCAACAAGCATAAAACATAATAAA
Found at i:79065134 original size:27 final size:30
Alignment explanation
Indices: 79065070--79065143 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
79065060 TGTCAATCAT
* *
79065070 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCATAAAAC--AATAAA
79065102 TTCAATATCTAACAAGCATAAAAC-AT-AA
1 TTCAATATCTAACAAGCATAAAACAATAAA
79065130 -TCAATATCTAACAA
1 TTCAATATCTAACAA
79065144 ATTCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.26
Consensus pattern (30 bp):
TTCAATATCTAACAAGCATAAAACAATAAA
Found at i:79067405 original size:22 final size:22
Alignment explanation
Indices: 79067352--79067405 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
79067342 GGGAAAAATT
*
79067352 TTGGCTTTTATTGAAATAAAAC
1 TTGGCTTTTGTTGAAATAAAAC
79067374 TTGGCTTTTGTTGAAATAAAAC
1 TTGGCTTTTGTTGAAATAAAAC
79067396 TTGGCTTTTG
1 TTGGCTTTTG
79067406 ATCAATGGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (22 bp):
TTGGCTTTTGTTGAAATAAAAC
Found at i:79076637 original size:178 final size:177
Alignment explanation
Indices: 79076405--79076797 Score: 538
Period size: 178 Copynumber: 2.2 Consensus size: 177
79076395 TACTTCAAGG
* * * * * *
79076405 AGATAAGATTCACTGTTTTTGATCTGCCCCACTGCTATCTCGAGGAGACAAAATCTACAATCTTC
1 AGATAAGATTCACCG-TATTGATTTGCTCCACTGCTAGCTCGAAGAGACAAAATCTACAATCTTC
*
79076470 AGT-TTGCTCCCTTGCTACCTCAGGAAGATAATACTACAATCTTCAACCTACTCCCTTGCTACCT
65 AGTCTT-CTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCT
* * * * *
79076534 TAGGAAGATAAGGTTGGTGACTAAAATCTGCT-TCTCTGCTACCTCGGGA
129 CAAGAAGATAAAGCTGGTGACTAAAATCTGCTCCCT-TGCTACCTCGGGA
* *
79076583 AGATAAGATTCGCCGTATTCGATTTGCTCCACTGCTAGCTCGAAGAGACAAAATCTGCAATCTTC
1 AGATAAGATTCACCGTATT-GATTTGCTCCACTGCTAGCTCGAAGAGACAAAATCTACAATCTTC
*
79076648 AGTCTTCTCCCTTGCTACCTTAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCTC
65 AGTCTTCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCTC
* * *
79076713 AAGAAGATAAAGCTGGTGGCTAAAATCTGCTCCCTTGTTACCTTGGGA
130 AAGAAGATAAAGCTGGTGACTAAAATCTGCTCCCTTGCTACCTCGGGA
* * *
79076761 AGATAAGATTCACCATCTGTGATTTGCTCCATTGCTA
1 AGATAAGATTCACCGTAT-TGATTTGCTCCACTGCTA
79076798 TTTCAGGGAA
Statistics
Matches: 189, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
177 3 0.02
178 181 0.96
179 5 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (177 bp):
AGATAAGATTCACCGTATTGATTTGCTCCACTGCTAGCTCGAAGAGACAAAATCTACAATCTTCA
GTCTTCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAACCTACTCCCTTGCTACCTCA
AGAAGATAAAGCTGGTGACTAAAATCTGCTCCCTTGCTACCTCGGGA
Found at i:79089916 original size:24 final size:24
Alignment explanation
Indices: 79089897--79089950 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
79089887 AGTTAAATTA
*
79089897 AATATTATA-AAAAAATTTAAAAT
1 AATATGATATAAAAAATTTAAAAT
79089920 AATATGATATAAAAAATGTCTTAAAAT
1 AATATGATATAAAAAA--T-TTAAAAT
79089947 AATA
1 AATA
79089951 ACTATATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 8 0.31
24 6 0.23
26 1 0.04
27 11 0.42
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (24 bp):
AATATGATATAAAAAATTTAAAAT
Found at i:79100999 original size:43 final size:44
Alignment explanation
Indices: 79100951--79101039 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 44
79100941 GAAGTGTAGT
*
79100951 TGTTATAGAA-AAGGTTGACTGTATA-CTTGAATTATCTAATGGC
1 TGTTATA-AAGAAGGTTGACTATATAGCTTGAATTATCTAATGGC
* *
79100994 TGTTATAAAGAAGGTTGATTATATATGCTTGAATTTTCTAATGGC
1 TGTTATAAAGAAGGTTGACTATATA-GCTTGAATTATCTAATGGC
79101039 T
1 T
79101040 ACATTTTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
42 2 0.05
43 20 0.50
45 18 0.45
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (44 bp):
TGTTATAAAGAAGGTTGACTATATAGCTTGAATTATCTAATGGC
Found at i:79101574 original size:21 final size:23
Alignment explanation
Indices: 79101534--79101575 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
79101524 TCATTCATGT
79101534 TAAACATTTAAAACAAATAAATC
1 TAAACATTTAAAACAAATAAATC
*
79101557 TAAAC-TTT-AAACACATAAA
1 TAAACATTTAAAACAAATAAA
79101576 AGTGTTTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 3 0.17
23 5 0.28
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (23 bp):
TAAACATTTAAAACAAATAAATC
Found at i:79106315 original size:26 final size:26
Alignment explanation
Indices: 79106286--79106393 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
79106276 TGGTACAAAT
79106286 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
79106312 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79106338 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79106364 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79106390 TGAT
1 TGAT
79106394 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79111194 original size:45 final size:45
Alignment explanation
Indices: 79111143--79111232 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
79111133 ATAGGTTTGA
79111143 TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
1 TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
*
79111188 TATTTTGATTATATATATGTTGATATTTGAGATTCATGTTAATAT
1 TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
79111233 GTTGAGTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.53
Consensus pattern (45 bp):
TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
Found at i:79135361 original size:43 final size:44
Alignment explanation
Indices: 79135313--79135401 Score: 119
Period size: 43 Copynumber: 2.0 Consensus size: 44
79135303 GAAGTGTAGT
*
79135313 TGTTATAGAA-AAGGTTGACTGTATA-CTTGAATTATCTAATGGC
1 TGTTATA-AAGAAGGTTGACTATATAGCTTGAATTATCTAATGGC
* *
79135356 TGTTATAAAGAAGGTTGATTATATATGCTTGAATTTTCTAATGGC
1 TGTTATAAAGAAGGTTGACTATATA-GCTTGAATTATCTAATGGC
79135401 T
1 T
79135402 ACATTTTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
42 2 0.05
43 20 0.50
45 18 0.45
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (44 bp):
TGTTATAAAGAAGGTTGACTATATAGCTTGAATTATCTAATGGC
Found at i:79135933 original size:21 final size:23
Alignment explanation
Indices: 79135893--79135934 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
79135883 TCATTCATGT
79135893 TAAACATTTAAAACAAATAAATC
1 TAAACATTTAAAACAAATAAATC
*
79135916 TAAAC-TTT-AAACACATAAA
1 TAAACATTTAAAACAAATAAA
79135935 AGTGTTTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 3 0.17
23 5 0.28
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (23 bp):
TAAACATTTAAAACAAATAAATC
Found at i:79140698 original size:26 final size:26
Alignment explanation
Indices: 79140669--79140776 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
79140659 TGGTACAAAT
79140669 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
79140695 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79140721 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79140747 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79140773 TGAT
1 TGAT
79140777 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79145587 original size:45 final size:45
Alignment explanation
Indices: 79145536--79145625 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
79145526 ATAGGTTTGA
79145536 TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
1 TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
*
79145581 TATTTTGATTATATATATGTTGATATTTGAGATTCATGTTAATAT
1 TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
79145626 GTTTGAGTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.53
Consensus pattern (45 bp):
TATTTTGATTATATATATGTTGATATTTAAGATTCATGTTAATAT
Found at i:79149601 original size:20 final size:20
Alignment explanation
Indices: 79149562--79149615 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
79149552 TTTTCTACTA
*
79149562 AAAC-TTATCATTTGATAACC
1 AAACATTATCATAT-ATAACC
79149582 ATAACA-TATCATATATAACC
1 A-AACATTATCATATATAACC
*
79149602 AACCATTATCATAT
1 AAACATTATCATAT
79149616 TACAACATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 3 0.10
20 16 0.55
21 10 0.34
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.33
Consensus pattern (20 bp):
AAACATTATCATATATAACC
Found at i:79151230 original size:5 final size:5
Alignment explanation
Indices: 79151212--79151259 Score: 87
Period size: 5 Copynumber: 9.4 Consensus size: 5
79151202 TTTACTTAAT
79151212 TATAA TAGTAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TA-TAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
79151260 ATATTTTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 37 0.88
6 5 0.12
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:79151464 original size:20 final size:20
Alignment explanation
Indices: 79151437--79151488 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
79151427 TAATCCTTAT
**
79151437 ACCTAATTAACCTTAATTTAA
1 ACCTAATTAACC-TAATCAAA
*
79151458 A-CTAATTCACCTAATCAAA
1 ACCTAATTAACCTAATCAAA
79151477 ACCTAATTAACC
1 ACCTAATTAACC
79151489 ACACAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.27
20 18 0.69
21 1 0.04
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (20 bp):
ACCTAATTAACCTAATCAAA
Found at i:79156666 original size:29 final size:29
Alignment explanation
Indices: 79156633--79157071 Score: 461
Period size: 29 Copynumber: 15.1 Consensus size: 29
79156623 ATCGATTAAA
* ** * *
79156633 GAAAAGGGATAGTTTCGACTATCGACTAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
79156662 GAAAAGGGGTGGTGACGACCATC-AATTAT
1 GAAAAGGGATGGTGACGACCATCGAA-TAT
* ** *
79156691 GAAAAGGGATCGTGACCTCCATCAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
79156720 GAAAAGGGATGGTGACGACCTTCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* *
79156749 CAAAAGGGATGGTGACAACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
79156778 AAAAAGAGATGGTGACGACTATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
79156807 GAAAAGGGATGGTGACAACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
79156836 GAAAAGGGATGGTGACGACCATCGACTAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* ** *
79156865 GAAAAGGGATAGTTTCGACTATC-AACTAT
1 GAAAAGGGATGGTGACGACCATCGAA-TAT
* ** * *
79156894 GAAAAGGGATAGTTTCGACTATCGACTAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* ** * * * *
79156923 GAAAAGGGATAGTTTCAACTATTGACTAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
79156952 GAAAAGGGATGGTGACGACCATCGATTAAT
1 GAAAAGGGATGGTGACGACCATCGAAT-AT
*
79156982 GAAAAGGGATGGT-TCTGACCATCGAATAT
1 GAAAAGGGATGGTGAC-GACCATCGAATAT
* **
79157011 GAAAATGGATGGTTTCGACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
79157040 GAAAAGGGATGGTGACGACTATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
79157069 GAA
1 GAA
79157072 CCATCGAATA
Statistics
Matches: 353, Mismatches: 50, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
28 2 0.01
29 321 0.91
30 30 0.08
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
GAAAAGGGATGGTGACGACCATCGAATAT
Found at i:79160016 original size:44 final size:44
Alignment explanation
Indices: 79159895--79160528 Score: 335
Period size: 44 Copynumber: 14.0 Consensus size: 44
79159885 GATCTGTGAC
* *
79159895 TTATAGCTTTAATCTGAC-CCACTGCAACTTCAAGGAGATGAGAT
1 TTATAGCTTTAATCTG-CTCCACTGCAACTTCAGGGAGATAAGAT
* * * * * *
79159939 TCACTATCTTCAATCTACTCCACTGCTACTTCAGGGAGATAAGGT
1 TTA-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* * * *
79159984 TTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGAGAAGATT
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T
* ** * * * * *
79160029 TTCTTTCTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGAC
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* * * * *
79160073 TTGTTGCTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGAT
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
** * * * *
79160117 TCGTGGCTTTAATCTTCTCCACTGTAACTTCAGGGAGACAAGAT
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
** * * *
79160161 TCGT-GACTTTAATCTGCTCCACTGTAACTTTAGAGAGATAAGAT
1 TTATAG-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
*** * * * *
79160205 TCGCCA-TTTTCAATCTACTCCACTGCAACTTCAGGGAGTTGAGAT
1 T-TATAGCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
** * * * * * *
79160250 TCGTAACTTCAACCTGTTCCACTGCAACTTCAAGGAGATAAGGT
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* * * *
79160294 TTATGGCTTTAATCTACTCCACTGAAACTTCAAGGAGATAAGAT
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* *
79160338 TCGCCATGATAACTTCAAT-TCGC-CCTACTGCAACTTCAGGG-GTATAAGATT
1 T-----T-ATAGCTTTAATCT-GCTCC-ACTGCAACTTCAGGGAG-ATAAGA-T
* * * * * *
79160389 TGTAACTTGTAGCTTAAATCAGTTCCACTACAACTTTAGGGAAATAAGAT
1 T-T-A----TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
*** * * * * * * *
79160439 CCGCTATCTTCAACCTGCTCCACTACAACTTCAGGAATATAAGGT
1 -TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
* * *
79160484 TAATGGCTTTAATCTGCTCCACTGCAACTTCGGGGAGATAAGAT
1 TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
79160528 T
1 T
79160529 GGCTGTGGTT
Statistics
Matches: 443, Mismatches: 121, Indels: 52
0.72 0.20 0.08
Matches are distributed among these distances:
43 1 0.00
44 244 0.55
45 130 0.29
47 2 0.00
49 5 0.01
50 29 0.07
51 30 0.07
52 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
TTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
Found at i:79160171 original size:88 final size:88
Alignment explanation
Indices: 79159901--79160340 Score: 379
Period size: 89 Copynumber: 5.0 Consensus size: 88
79159891 TGACTTATAG
** * * * ** * *
79159901 CTTTAATCTGACCCACTGCAACTTCAAGGAGATGAGATTCACTATCTTCAATCTACTCCACTGCT
1 CTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGATTC-GTGGCTTTAATCTACTCCACTGCA
* **
79159966 ACTTCAGGGAGATAAGGTTTAT-A
65 ACTTCAGGGAGATAAGATTCGTGA
* * * * * ** * *
79159989 GCTTTAATTTGCTCTACTGCAACTTC-AGAGAGAGAAGATTTTC-TTTCTTCAGTCTACTCCACT
1 -CTTTAATCTGTTCCACTGTAACTTCAAG-GAGATAAGA--TTCGTGGCTTTAATCTACTCCACT
*
79160052 GCAACTTTAGGGAGATAAGACTT-GTTG-
62 GCAACTTCAGGGAGATAAGA-TTCG-TGA
* *
79160079 CTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGATTCGTGGCTTTAATCTTCTCCACTGTAA
1 CTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGATTCGTGGCTTTAATCTACTCCACTGCAA
*
79160144 CTTCAGGGAGACAAGATTCGTGA
66 CTTCAGGGAGATAAGATTCGTGA
* * ****
79160167 CTTTAATCTGCTCCACTGTAACTT-TAGAGAGATAAGATTCGCCATTTTCAATCTACTCCACTGC
1 CTTTAATCTGTTCCACTGTAACTTCAAG-GAGATAAGATTCGTGGCTTT-AATCTACTCCACTGC
* * *
79160231 AACTTCAGGGAGTTGAGATTCGTAA
64 AACTTCAGGGAGATAAGATTCGTGA
* * * * ** *
79160256 CTTCAACCTGTTCCACTGCAACTTCAAGGAGATAAGGTTTATGGCTTTAATCTACTCCACTGAAA
1 CTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGATTCGTGGCTTTAATCTACTCCACTGCAA
*
79160321 CTTCAAGGAGATAAGATTCG
66 CTTCAGGGAGATAAGATTCG
79160341 CCATGATAAC
Statistics
Matches: 285, Mismatches: 53, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
87 9 0.03
88 107 0.38
89 159 0.56
90 7 0.02
91 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (88 bp):
CTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGATTCGTGGCTTTAATCTACTCCACTGCAA
CTTCAGGGAGATAAGATTCGTGA
Found at i:79160198 original size:177 final size:177
Alignment explanation
Indices: 79159898--79160340 Score: 516
Period size: 177 Copynumber: 2.5 Consensus size: 177
79159888 CTGTGACTTA
** * ** *
79159898 TAGCTTTAATCTGACCCACTGCAACTTCAAGGAGATGAGATTCACTATCTTCAATCTACTCCACT
1 TAGCTTTAATCTGTTCCACTGCAACTTCAAGGAGATAAGATTCA-TGGCTTTAATCTACTCCACT
* ** * *
79159963 GCT-ACTTCAGGGAGATAAGGTTTATAGCTTTAATTTGCTCTACTGCAACTTCAGAGAGAGAAGA
65 G-TAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGAGAAGA
** * * *
79160027 TT-TTCTTTCTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTT-G
129 TTCGCCATT-TTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA-TTCG
* * * *
79160076 TTGCTTTAATCTGTTCCACTGTAACTTCAAGGAGATAAGATTCGTGGCTTTAATCTTCTCCACTG
1 TAGCTTTAATCTGTTCCACTGCAACTTCAAGGAGATAAGATTCATGGCTTTAATCTACTCCACTG
* * * *
79160141 TAACTTCAGGGAGACAAGATTCGT-GACTTTAATCTGCTCCACTGTAACTTTAGAGAGATAAGAT
66 TAACTTCAGGGAGATAAGATTCGTAG-CTTTAATCTGCTCCACTGCAACTTCAGAGAGAGAAGAT
* *
79160205 TCGCCATTTTCAATCTACTCCACTGCAACTTCAGGGAGTTGAGATTCG
130 TCGCCATTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCG
* * * * *
79160253 TAACTTCAACCTGTTCCACTGCAACTTCAAGGAGATAAGGTTTATGGCTTTAATCTACTCCACTG
1 TAGCTTTAATCTGTTCCACTGCAACTTCAAGGAGATAAGATTCATGGCTTTAATCTACTCCACTG
* *
79160318 AAACTTCAAGGAGATAAGATTCG
66 TAACTTCAGGGAGATAAGATTCG
79160341 CCATGATAAC
Statistics
Matches: 223, Mismatches: 38, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
176 4 0.02
177 178 0.80
178 41 0.18
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (177 bp):
TAGCTTTAATCTGTTCCACTGCAACTTCAAGGAGATAAGATTCATGGCTTTAATCTACTCCACTG
TAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGAGAAGATT
CGCCATTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCG
Found at i:79160220 original size:133 final size:132
Alignment explanation
Indices: 79159901--79160344 Score: 389
Period size: 133 Copynumber: 3.3 Consensus size: 132
79159891 TGACTTATAG
* * * *
79159901 CTTTAATCTGAC-CCACTGCAACTTCAAGGAGATGAGATTCACTATCTTCAATCTACTCCACTGC
1 CTTTAATCT-ACTCCACTGCAACTTCAAGGAGATAAGATTCGCCATTTTCAATCTACTCCACTG-
* ** * * *
79159965 T-ACTTCAGGGAGATAAGGTTTATAGCTTTAAT-TTGCTCTACTGCAACTTCAGAGAGAGAAGAT
64 TAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTT-CTCCACTGCAACTTCAGGGAGACAAGA-
**
79160028 TTTCTTT
127 -TTCTGA
* * * * **** **
79160035 CTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTT-GTTGCTTT-AATCTGTTCCACTGT
1 CTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGA-TTCGCCATTTTCAATCTACTCCACTGT
* * *
79160098 AACTTCAAGGAGATAAGATTCGTGGCTTTAATCTTCTCCACTGTAACTTCAGGGAGACAAGATTC
65 AACTTCAGGGAGATAAGATTCGTAGCTTTAATCTTCTCCACTGCAACTTCAGGGAGACAAGATTC
79160163 GTGA
130 -TGA
* * * *
79160167 CTTTAATCTGCTCCACTGTAACTT-TAGAGAGATAAGATTCGCCATTTTCAATCTACTCCACTGC
1 CTTTAATCTACTCCACTGCAACTTCAAG-GAGATAAGATTCGCCATTTTCAATCTACTCCACTGT
* * * * * * * *
79160231 AACTTCAGGGAGTTGAGATTCGTAACTTCAACCTGT-TCCACTGCAACTTCAAGGAGATAAGGTT
65 AACTTCAGGGAGATAAGATTCGTAGCTTTAATCT-TCTCCACTGCAACTTCAGGGAGACAA-GAT
* *
79160295 TATGG
128 TCTGA
*
79160300 CTTTAATCTACTCCACTGAAACTTCAAGGAGATAAGATTCGCCAT
1 CTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCGCCAT
79160345 GATAACTTCA
Statistics
Matches: 247, Mismatches: 52, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
131 6 0.02
132 35 0.14
133 164 0.66
134 40 0.16
135 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (132 bp):
CTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCGCCATTTTCAATCTACTCCACTGTA
ACTTCAGGGAGATAAGATTCGTAGCTTTAATCTTCTCCACTGCAACTTCAGGGAGACAAGATTCT
GA
Found at i:79165830 original size:11 final size:9
Alignment explanation
Indices: 79165807--79165832 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
79165797 TGTACATAAC
79165807 ATATATACA
1 ATATATACA
79165816 ATATATACA
1 ATATATACA
79165825 ATATATAC
1 ATATATAC
79165833 CTATATTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (9 bp):
ATATATACA
Found at i:79166021 original size:24 final size:24
Alignment explanation
Indices: 79165973--79166025 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
79165963 ATAGCTGACA
*
79165973 ATATTAAAATATATACATAACAAC
1 ATATAAAAATATATACATAACAAC
79165997 ATATAAAAATATAATAACA-AA-AAC
1 ATATAAAAATAT-AT-ACATAACAAC
79166021 ATATA
1 ATATA
79166026 TGCATAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 19 0.73
25 4 0.15
26 3 0.12
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.26
Consensus pattern (24 bp):
ATATAAAAATATATACATAACAAC
Found at i:79166930 original size:26 final size:27
Alignment explanation
Indices: 79166888--79166941 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
79166878 ATCGCAAAGG
79166888 TAAGATTTTTTTTCGTGTTTTTAAATA
1 TAAGATTTTTTTTCGTGTTTTTAAATA
79166915 TAAGA-TTTTTTTCGTGTTTTTAAATA
1 TAAGATTTTTTTTCGTGTTTTTAAATA
79166941 T
1 T
79166942 TCTTTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (27 bp):
TAAGATTTTTTTTCGTGTTTTTAAATA
Found at i:79168282 original size:14 final size:14
Alignment explanation
Indices: 79168263--79168290 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79168253 GATTTTCACG
79168263 AACAGAAATTGAAA
1 AACAGAAATTGAAA
79168277 AACAGAAATTGAAA
1 AACAGAAATTGAAA
79168291 TTACCTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:79168438 original size:89 final size:87
Alignment explanation
Indices: 79168047--79168434 Score: 480
Period size: 89 Copynumber: 4.4 Consensus size: 87
79168037 CATTTCTTAA
* * * * **
79168047 AGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAA-AGCAGAATTTGCAAAACAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTGAAAAACAGAAATT
*
79168111 GAAAATACCTCGGCATGTGACCC-G
66 GAAAATACCTCAGC--GTG-CCCTG
* * * * **
79168135 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAAAACATTAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTG-AAAAACAGAAAT
79168200 TGAAAATACCTCAGCGTG-CCTCG
65 TGAAAATACCTCAGCGTGCCCT-G
* * *
79168223 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTCACGAACAGAAATTGAAAAACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTGAAAAACAGAAATT
* *
79168287 GAAATTACCTCAGCGTGTCCTG
66 GAAAATACCTCAGCGTGCCCTG
*
79168309 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTCG-AAAGCAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAGAGCAGAAATT-GAAAAACAGAA
*
79168373 ATCGAAAATACCTCAGCGTGCCCTG
63 ATTGAAAATACCTCAGCGTGCCCTG
*
79168398 AGGCTCAACTCACCTCTCGCAATAGGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
79168435 TTGACAAACA
Statistics
Matches: 261, Mismatches: 30, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
86 62 0.24
87 21 0.08
88 71 0.27
89 85 0.33
90 22 0.08
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTGAAAAACAGAAATT
GAAAATACCTCAGCGTGCCCTG
Found at i:79168508 original size:75 final size:75
Alignment explanation
Indices: 79168371--79168513 Score: 241
Period size: 75 Copynumber: 1.9 Consensus size: 75
79168361 TCGAAAGCAG
*
79168371 AAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTGATTTTTT
1 AAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTAATTTTTT
79168436 TGACAAACAT
66 TGACAAACAT
* * * *
79168446 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTT
1 AAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTAATTTTTT
79168511 TGA
66 TGA
79168514 GAAGAAGAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 63 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (75 bp):
AAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTAATTTTTT
TGACAAACAT
Found at i:79168525 original size:75 final size:75
Alignment explanation
Indices: 79168368--79168530 Score: 238
Period size: 75 Copynumber: 2.2 Consensus size: 75
79168358 AATTCGAAAG
* *
79168368 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTAATTT
79168433 TTTTGACAAA
66 TTTTGACAAA
* * * *
79168443 CATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTAATTT
*
79168508 TTTTGAGAAGA
66 TTTTGACAA-A
*
79168519 -AGAAATTTAAAA
1 CAGAAATTGAAAA
79168531 AACATCTATT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
75 76 0.99
76 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (75 bp):
CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTAATTT
TTTTGACAAA
Found at i:79168688 original size:250 final size:243
Alignment explanation
Indices: 79168190--79168982 Score: 830
Period size: 250 Copynumber: 3.3 Consensus size: 243
79168180 TAAATTGAAA
*
79168190 AAACATTAATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACATAAATTGAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
79168254 A--TTTTCACGAA-CAGAAATTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
65 ATTTTTTTA-GAAGAAGAAATT-AAAAA-A-CAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
* *
79168316 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTCG-AAAGCAGAAATCGAAA
126 ACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-A-CATAAATT-GAAAAACAGAAATCGAAA
* *
79168380 ATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATAGGAGTTGATTTTTTTGAC
186 ATACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAC
* *
79168440 AAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
1 AAACATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
79168505 TTTTTTTGAGAAGAAGAAATTTAAAAAACATCTATTGAAAATACCTCGGCGTATGACCTGAGGCT
66 TTTTTTT-AGAAGAAGAAA-TTAAAAAACA---ATTGAAAATACCTCAGCG--TGTCCTGAGGCT
* * *
79168570 TAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATCAAAAATA
124 CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATCGAAAATA
* *
79168635 CCTCAGCATGTCCCGAGGCTCAACTCACTTCCCGCAATATGAGTTGATTTTTGAC
189 CCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
* * * * * * *
79168690 AAATAGT-AATTGAAAATACCGCAACGTGCCCCGAGGCTCAACTCACCTCTAGCAATAGGAGTTG
1 AAACA-TAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
** * *
79168754 --TTTTTT----GAA-AAA-TCCAAAA-AATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTC
65 ATTTTTTTAGAAGAAGAAATTAAAAAACAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
* * * * *
79168810 ATCTCTTGCAATATGAGTTGA-TTTT------T---TT-AAAAAAAGAATTTGAAAATACCTCAG
130 ACCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAG
** * *
79168864 CATGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
195 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
* * * *
79168913 AAACAGAAACTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
79168978 TTTTT
66 TTTTT
79168983 GAAAAAAGCA
Statistics
Matches: 468, Mismatches: 58, Indels: 59
0.80 0.10 0.10
Matches are distributed among these distances:
223 117 0.25
224 2 0.00
225 4 0.01
227 1 0.00
233 4 0.01
234 33 0.07
236 16 0.03
239 1 0.00
240 5 0.01
242 3 0.01
243 3 0.01
248 6 0.01
250 119 0.25
251 6 0.01
252 71 0.15
253 15 0.03
254 26 0.06
256 36 0.08
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (243 bp):
AAACATAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTAGAAGAAGAAATTAAAAAACAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATCGAAAATACCTCAGC
ATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
Found at i:79168752 original size:73 final size:73
Alignment explanation
Indices: 79168612--79169135 Score: 525
Period size: 73 Copynumber: 7.0 Consensus size: 73
79168602 GAAACATAAA
** * * *
79168612 TTGAAAAACAGAAATCAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACTTCCCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
79168677 GTTGATTT
66 GTTGATTT
* * * * * * * *
79168685 TTGACAAATAGTAATTGAAAATACCGCAACGTGCCCCGAGGCTCAACTCACCTCTAGCAATAGGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
79168750 GTTGTTTT
66 GTTGATTT
* * * *
79168758 TTGAAAAATCCAAAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTTGCAATA
1 TTGAAAAA--C-AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
79168823 TGAGTTGATTTT
63 TGAGTTGA-TTT
* * * * ** *
79168835 TTTAAAAAAAGAATTTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
79168900 GTTGATTT
66 GTTGATTT
* * * *
79168908 TTGAAAAACAGAAACTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
79168973 GTTGATTT
66 GTTGATTT
** * *
79168981 TTGAAAAAAGCAGAAATT-AAAAGTACCTCAATGTG-CCTTGAGGCTCGACTCACCTCTCGCAAT
1 TTG-AAAAA-CAGAAATTGAAAA-TACCTCAGCGTGTCC-CGAGGCTCAACTCACCTCTCGCAAT
*
79169044 ATGAGTTG-GTT
62 ATGAGTTGATTT
** *
79169055 TTGACAAACAGAAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGGTCAACTCACCT-TCC
1 TTG----A-A-AAACAGAAATTGAAAATACCTCAG--CGTGTCCCGAGGCTCAACTCACCTCT-C
*
79169119 GCACTATGAGTTGATTT
57 GCAATATGAGTTGATTT
79169136 AAAAAATAGA
Statistics
Matches: 371, Mismatches: 61, Indels: 30
0.80 0.13 0.06
Matches are distributed among these distances:
73 136 0.37
74 67 0.18
75 48 0.13
76 51 0.14
77 12 0.03
78 16 0.04
79 8 0.02
80 30 0.08
81 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:79169057 original size:147 final size:146
Alignment explanation
Indices: 79168612--79169076 Score: 537
Period size: 147 Copynumber: 3.2 Consensus size: 146
79168602 GAAACATAAA
* * * * *
79168612 TTGAAAAACAGAAA-TCAAAAATACCTCAGCATGTCCCGAGGCTCAACTCACTTCCCGCAATATG
1 TTGAAAAACAGAAACT-GAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
* * * * * ** *
79168676 AGTTGATTTTTGACAAATAGTAATTGAAAATACCGCAACGTGCCCCGAGGCTCAACTCACCTCTA
65 AGTTGATTTTTGAAAAAAAGAAATTGAAAATACCTCAATGTGCCTTGAGGCTCAACTCACCTCTC
* *
79168741 GCAATAGGAGTTGTTTT
130 GCAATATGAGTTGATTT
* * * *
79168758 TTGAAAAATCCAAAAAATTGACAA-TACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTTGCAAT
1 TTGAAAAA--C-AGAAACTGA-AATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
* *
79168822 ATGAGTTGATTTTTTTAAAAAAAGAATTTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCA
62 ATGAGTTGA-TTTTTGAAAAAAAGAAATTGAAAATACCTCA--ATGTGCCTTGAGGCTCAACTCA
*
79168885 CCTCTCACAATATGAGTTGATTT
124 CCTCTCGCAATATGAGTTGATTT
* *
79168908 TTGAAAAACAGAAACTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAACTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
79168973 GTTGATTTTTGAAAAAAGCAGAAATT-AAAAGTACCTCAATGTGCCTTGAGGCTCGACTCACCTC
66 GTTGATTTTTGAAAAAA--AGAAATTGAAAA-TACCTCAATGTGCCTTGAGGCTCAACTCACCTC
*
79169037 TCGCAATATGAGTTG-GTT
128 TCGCAATATGAGTTGATTT
* *
79169055 TTGACAAACAGAAACAGAAATT
1 TTGAAAAACAGAAACTGAAATT
79169077 GAAAATACCT
Statistics
Matches: 272, Mismatches: 33, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
146 25 0.09
147 78 0.29
148 48 0.18
149 49 0.18
150 69 0.25
152 3 0.01
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (146 bp):
TTGAAAAACAGAAACTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAAAAGAAATTGAAAATACCTCAATGTGCCTTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTT
Found at i:79174219 original size:40 final size:40
Alignment explanation
Indices: 79174102--79174281 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
79174092 ACCCAAGTTT
* * * * * *
79174102 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * * *
79174141 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGC
* *
79174181 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
*
79174221 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
79174261 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
79174282 TCATTCAAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 11 0.09
40 106 0.88
41 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
Found at i:79182255 original size:40 final size:40
Alignment explanation
Indices: 79182210--79182401 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
79182200 ATAACCACAA
* * *
79182210 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
79182250 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
79182290 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
79182330 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
79182370 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
79182402 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:79182294 original size:80 final size:80
Alignment explanation
Indices: 79182181--79182400 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
79182171 ACCCAAGTTT
* * * * * * * * *
79182181 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
79182244 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
79182260 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
79182324 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
79182340 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
79182401 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:79193152 original size:22 final size:20
Alignment explanation
Indices: 79193117--79193157 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
79193107 TCTATATGAA
*
79193117 AACATTAAAAATATGTACAT
1 AACATTAAAAATATATACAT
79193137 AACATATATAAAATATATACA
1 AACAT-TA-AAAATATATACA
79193158 ATATATACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (20 bp):
AACATTAAAAATATATACAT
Found at i:79193332 original size:24 final size:24
Alignment explanation
Indices: 79193305--79193357 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
79193295 ATAGCTGACA
*
79193305 ATATTAAAATAT-AT-ACATAACAAC
1 ATATAAAAATATGATAACA-AA-AAC
79193329 ATATAAAAATATGATAACAAAAAC
1 ATATAAAAATATGATAACAAAAAC
79193353 ATATA
1 ATATA
79193358 TGCATAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 19 0.73
25 4 0.15
26 3 0.12
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.26
Consensus pattern (24 bp):
ATATAAAAATATGATAACAAAAAC
Found at i:79199389 original size:3 final size:3
Alignment explanation
Indices: 79199381--79199434 Score: 65
Period size: 3 Copynumber: 18.0 Consensus size: 3
79199371 AATATGCAGG
* * *
79199381 AAT AAT AAT AAC AAT AAT GAA- AAT GAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
79199426 AAT AAT AAT
1 AAT AAT AAT
79199435 GAATGAATGA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.91
4 2 0.05
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:79199441 original size:4 final size:4
Alignment explanation
Indices: 79199432--79199460 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
79199422 TAATAATAAT
79199432 AATG AATG AATG AATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG AATG A
79199461 TTTAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:79211481 original size:8 final size:10
Alignment explanation
Indices: 79211457--79211489 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
79211447 CATTAAGAAC
79211457 ATATTTTATT
1 ATATTTTATT
79211467 ATATTTTATT
1 ATATTTTATT
79211477 AT-TTTTA-T
1 ATATTTTATT
79211485 ATATT
1 ATATT
79211490 ATTTAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.14
9 7 0.32
10 12 0.55
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
ATATTTTATT
Found at i:79213254 original size:11 final size:11
Alignment explanation
Indices: 79213238--79213267 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
79213228 TTATAGGCAT
79213238 AAGAAGTACAA
1 AAGAAGTACAA
*
79213249 AAGAAGTATAA
1 AAGAAGTACAA
79213260 AAGAAGTA
1 AAGAAGTA
79213268 GAGATCTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.63, C:0.03, G:0.20, T:0.13
Consensus pattern (11 bp):
AAGAAGTACAA
Found at i:79219041 original size:14 final size:13
Alignment explanation
Indices: 79219000--79219053 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 13
79218990 CCCAATTTCC
79219000 AATTTTATATTTTT
1 AATTTTA-ATTTTT
*
79219014 AATCTTTAAATTTT
1 AAT-TTTAATTTTT
79219028 AATTTTAGATTTTT
1 AATTTTA-ATTTTT
*
79219042 AAGTTTCAATTT
1 AA-TTTTAATTT
79219054 CAAATTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 4 0.12
14 22 0.65
15 8 0.24
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (13 bp):
AATTTTAATTTTT
Found at i:79219042 original size:21 final size:20
Alignment explanation
Indices: 79219000--79219053 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
79218990 CCCAATTTCC
79219000 AATTTTATATTTTTAATCTTTA
1 AATTTTA-A-TTTTAATCTTTA
*
79219022 AATTTTAATTTTAGATTTTTA
1 AATTTTAATTTTA-ATCTTTA
* *
79219043 AGTTTCAATTT
1 AATTTTAATTT
79219054 CAAATTTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 16 0.57
22 7 0.25
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (20 bp):
AATTTTAATTTTAATCTTTA
Found at i:79219059 original size:28 final size:29
Alignment explanation
Indices: 79218992--79219061 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 29
79218982 CTTTAATCCC
* *
79218992 CAATTTCCAATTTTATATTTTTAATCTTT
1 CAATTTCAAATTTTAGATTTTTAATCTTT
* * *
79219021 AAATTT-TAATTTTAGATTTTTAA-GTTT
1 CAATTTCAAATTTTAGATTTTTAATCTTT
79219048 CAATTTCAAATTTT
1 CAATTTCAAATTTT
79219062 CAACCCTCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 8 0.24
28 21 0.62
29 5 0.15
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (29 bp):
CAATTTCAAATTTTAGATTTTTAATCTTT
Found at i:79219060 original size:21 final size:21
Alignment explanation
Indices: 79219018--79219061 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
79219008 ATTTTTAATC
* * *
79219018 TTTAAATTTTAATTTTAGATT
1 TTTAAATTTCAATTTCAAATT
*
79219039 TTTAAGTTTCAATTTCAAATT
1 TTTAAATTTCAATTTCAAATT
79219060 TT
1 TT
79219062 CAACCCTCAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TTTAAATTTCAATTTCAAATT
Found at i:79219636 original size:28 final size:28
Alignment explanation
Indices: 79219596--79219654 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
79219586 AAGTTTAGAG
79219596 GTTGTAGCACCCCAAACCCGGCCCAGAA
1 GTTGTAGCACCCCAAACCCGGCCCAGAA
79219624 GTTGTAGCACCCCAAACCCGGCCCAGAA
1 GTTGTAGCACCCCAAACCCGGCCCAGAA
79219652 GTT
1 GTT
79219655 ATGGCCGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.37, G:0.22, T:0.14
Consensus pattern (28 bp):
GTTGTAGCACCCCAAACCCGGCCCAGAA
Found at i:79222282 original size:26 final size:26
Alignment explanation
Indices: 79222251--79222358 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
79222241 TGAAATTCCC
*
79222251 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
79222277 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
79222303 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
79222329 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
79222355 ATCA
1 ATCA
79222359 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:79236476 original size:26 final size:26
Alignment explanation
Indices: 79236446--79236523 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
79236436 TAAAATTTCC
*
79236446 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
79236472 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
79236498 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
79236524 TTCAATTTGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:79238406 original size:21 final size:21
Alignment explanation
Indices: 79238382--79238449 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 21
79238372 TGCCTAAAAT
*
79238382 GACACACAAGGTGCTTGATAC
1 GACACACAAGGTGCCTGATAC
* *
79238403 GACACACGAGGTACCTGATATAC
1 GACACACAAGGTGCCTG--ATAC
* *
79238426 GACACATAAAGTGCCTGAT-C
1 GACACACAAGGTGCCTGATAC
79238446 GACA
1 GACA
79238450 AAGCCGATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 5 0.13
21 16 0.42
23 17 0.45
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (21 bp):
GACACACAAGGTGCCTGATAC
Found at i:79238734 original size:20 final size:20
Alignment explanation
Indices: 79238711--79238771 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
79238701 ACCTTATAGT
79238711 TTTACTACCATACATATAAA
1 TTTACTACCATACATATAAA
* *
79238731 TTTA--A--ATACCTTATAAT
1 TTTACTACCATA-CATATAAA
79238748 TTTACTACCATACATATAAA
1 TTTACTACCATACATATAAA
79238768 TTTA
1 TTTA
79238772 AATGTAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
16 3 0.09
17 10 0.31
18 1 0.03
19 1 0.03
20 14 0.44
21 3 0.09
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTACTACCATACATATAAA
Found at i:79238751 original size:37 final size:37
Alignment explanation
Indices: 79238700--79238774 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
79238690 TATTGATACT
*
79238700 TACCTTATAGTTTTACTACCATACATATAAATTTAAA
1 TACCTTATAATTTTACTACCATACATATAAATTTAAA
79238737 TACCTTATAATTTTACTACCATACATATAAATTTAAA
1 TACCTTATAATTTTACTACCATACATATAAATTTAAA
79238774 T
1 T
79238775 GTAACATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.16, G:0.01, T:0.41
Consensus pattern (37 bp):
TACCTTATAATTTTACTACCATACATATAAATTTAAA
Found at i:79238760 original size:21 final size:21
Alignment explanation
Indices: 79238700--79238760 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 21
79238690 TATTGATACT
*
79238700 TACCTTATAGTTTTACTACCA
1 TACCTTATAATTTTACTACCA
* *
79238721 TA-CATATAAATTTA--A--A
1 TACCTTATAATTTTACTACCA
79238737 TACCTTATAATTTTACTACCA
1 TACCTTATAATTTTACTACCA
79238758 TAC
1 TAC
79238761 ATATAAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
16 3 0.10
17 10 0.33
18 1 0.03
19 1 0.03
20 9 0.30
21 6 0.20
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.41
Consensus pattern (21 bp):
TACCTTATAATTTTACTACCA
Found at i:79238769 original size:21 final size:21
Alignment explanation
Indices: 79238710--79238770 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
79238700 TACCTTATAG
79238710 TTTTACTACCATACATATAAA
1 TTTTACTACCATACATATAAA
* *
79238731 TTTAAATACC-T---TAT-AA
1 TTTTACTACCATACATATAAA
79238747 TTTTACTACCATACATATAAA
1 TTTTACTACCATACATATAAA
79238768 TTT
1 TTT
79238771 AAATGTAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
16 10 0.32
17 4 0.13
20 4 0.13
21 13 0.42
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (21 bp):
TTTTACTACCATACATATAAA
Found at i:79238990 original size:17 final size:18
Alignment explanation
Indices: 79238956--79238991 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
79238946 TGAATTTCTA
79238956 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
79238974 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
79238991 T
1 T
79238992 AACTCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:79239449 original size:16 final size:17
Alignment explanation
Indices: 79239418--79239458 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
79239408 TGTTGTCTGC
79239418 TTCTTTCTCCTTTCTTT
1 TTCTTTCTCCTTTCTTT
*
79239435 TTCTTT-TCTTTTCTTT
1 TTCTTTCTCCTTTCTTT
*
79239451 TTATTTCT
1 TTCTTTCT
79239459 TTACTATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (17 bp):
TTCTTTCTCCTTTCTTT
Found at i:79239758 original size:3 final size:3
Alignment explanation
Indices: 79239745--79239801 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
79239735 AATTTATTCC
*
79239745 ATA AT- ATA ATA ATA A-A ATA ATA AT- ATAA ACA ATA ATA ATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA A-TA ATA
*
79239789 ATT ATA ATA ATA A
1 ATA ATA ATA ATA A
79239802 ATATCTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 6 0.13
3 35 0.78
4 4 0.09
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:79239769 original size:19 final size:20
Alignment explanation
Indices: 79239745--79239802 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 20
79239735 AATTTATTCC
79239745 ATAATATAATAATAAAA-TA
1 ATAATATAATAATAAAATTA
*
79239764 ATAATATAAACAATAATAATTA
1 ATAATAT-AATAATAA-AATTA
79239786 ATAATTATAATAATAAA
1 ATAA-TATAATAATAAA
79239803 TATCTATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 7 0.21
20 7 0.21
21 3 0.09
22 13 0.39
23 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAATATAATAATAAAATTA
Found at i:79239778 original size:23 final size:23
Alignment explanation
Indices: 79239752--79239795 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
79239742 TCCATAATAT
79239752 AATAATAAAATAATAA-TATAAAC
1 AATAAT-AAATAATAATTATAAAC
*
79239775 AATAATAATTAATAATTATAA
1 AATAATAAATAATAATTATAA
79239796 TAATAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AATAATAAATAATAATTATAAAC
Found at i:79241457 original size:144 final size:143
Alignment explanation
Indices: 79241197--79241475 Score: 522
Period size: 144 Copynumber: 1.9 Consensus size: 143
79241187 ACTAGAAGAG
* *
79241197 AAATTAAACCTCCTAAGAAGTATGCCTAGGTTGATCAAGTTGCTTATGCTTTAAATGTGGGGTGA
1 AAATTAAACCTCCTAAGAAGTATGCCTAGGTTAATCAAGTTGCTTATGCTTTAAATGTGGGGTAA
79241262 AGATATAGATGCGAACCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTGTGAAGACTCAGAAA
66 AGATATAGATGCGAACCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTGTGAAGACTCAG-AA
79241327 AGTGGATGTTTGCT
130 AGTGGATGTTTGCT
79241341 AAATTAAACCTCCTAAGAAGTATGCCTAGGTTAATCAAGTTGCTTATGCTTTAAATGTGGGGTAA
1 AAATTAAACCTCCTAAGAAGTATGCCTAGGTTAATCAAGTTGCTTATGCTTTAAATGTGGGGTAA
*
79241406 AGATATAGATGCGAACCAAGAGCCATCTAATTATTCTGAGGGGGTTAGCTGTGAAGACTCAGAAA
66 AGATATAGATGCGAACCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTGTGAAGACTCAGAAA
79241471 GTGGA
131 GTGGA
79241476 GATGAAATCA
Statistics
Matches: 132, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
143 8 0.06
144 124 0.94
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (143 bp):
AAATTAAACCTCCTAAGAAGTATGCCTAGGTTAATCAAGTTGCTTATGCTTTAAATGTGGGGTAA
AGATATAGATGCGAACCAAGAGCCATCTAATTATTCTGAGGCGGTTAGCTGTGAAGACTCAGAAA
GTGGATGTTTGCT
Found at i:79244103 original size:23 final size:22
Alignment explanation
Indices: 79244077--79244121 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
79244067 CACTTCATAT
*
79244077 ACCAAAATCAAACCATAATCACA
1 ACCAAAACCAAACCAT-ATCACA
*
79244100 ACCAAAACCAAGCCATATCACA
1 ACCAAAACCAAACCATATCACA
79244122 TGGCTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.53, C:0.33, G:0.02, T:0.11
Consensus pattern (22 bp):
ACCAAAACCAAACCATATCACA
Found at i:79249019 original size:46 final size:46
Alignment explanation
Indices: 79248952--79249265 Score: 320
Period size: 46 Copynumber: 6.8 Consensus size: 46
79248942 TGTAACCTGC
* *
79248952 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* * *
79248998 CCATAAGTGTACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
79249048 --TTCA-TGAACTAGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
79249091 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * * * *
79249141 --TTCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
79249184 CCATAAGTGAACTCGAACACAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
79249230 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
79249266 ATGCCCAAAT
Statistics
Matches: 217, Mismatches: 33, Indels: 36
0.76 0.12 0.13
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 2 0.01
45 4 0.02
46 128 0.59
47 53 0.24
48 5 0.02
49 2 0.01
50 7 0.03
51 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:79249067 original size:93 final size:92
Alignment explanation
Indices: 79248959--79249219 Score: 423
Period size: 93 Copynumber: 2.8 Consensus size: 92
79248949 TGCCCATAAG
* * *
79248959 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGTACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCA
79249024 ACGAGTTCGGATGCCTAGTTACATTTCA
65 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
79249052 TGAACTAGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCA
79249117 ACGAGTTCGGATGCCTAGTTACATTTCA
65 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
79249145 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGAACACAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCG-ACTCAACTCA
79249210 ACGAGTTCGG
65 ACGAGTTCGG
79249220 GCATTCGCAT
Statistics
Matches: 156, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
92 1 0.01
93 155 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (92 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCA
Found at i:79249074 original size:47 final size:47
Alignment explanation
Indices: 79249008--79249174 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 47
79248998 CCATAAGTGT
*
79249008 ACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGA
1 ACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGA
* * * *
79249055 ACTAGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGTGA
1 ACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-TGA
*
79249101 ACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGA
1 ACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGA
*
79249148 ACTCGGACTCAACTCAACGAGCTCGGA
1 ACTCGGACTCAACTCAACGAGTTCGGA
79249175 CATTCCCATC
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 29 0.29
47 53 0.53
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
ACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGA
Found at i:79252035 original size:15 final size:15
Alignment explanation
Indices: 79252017--79252055 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
79252007 TCCAAGATTG
79252017 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
*
79252032 AGAAATCCAGAATAA
1 AGAAACCCAGAATAA
79252047 AGAAACCCA
1 AGAAACCCA
79252056 AGATACGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.59, C:0.21, G:0.13, T:0.08
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:79252051 original size:30 final size:30
Alignment explanation
Indices: 79251996--79252055 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
79251986 CAAGAAAACT
**
79251996 GAATAAAGAAATCCAAGATTGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
79252026 GAATAAAGAAATCC-AGAATAAAGAAACCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
79252056 AGATACGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.57, C:0.17, G:0.15, T:0.12
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:79253144 original size:16 final size:17
Alignment explanation
Indices: 79253123--79253155 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79253113 CACATTGAAG
79253123 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
79253139 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
79253156 CTTTTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:79254015 original size:32 final size:32
Alignment explanation
Indices: 79253979--79254076 Score: 118
Period size: 32 Copynumber: 3.2 Consensus size: 32
79253969 ATCTGGACCA
79253979 TAGCCCCTTACAGTAACAGAGTATACTGGGCC
1 TAGCCCCTTACAGTAACAGAGTATACTGGGCC
* *
79254011 TAG-CCCATATCAGTATC--A--AT-CTGGGCC
1 TAGCCCCTTA-CAGTAACAGAGTATACTGGGCC
79254038 ATAGCCCCTTACAGTAACAGAGTATACTGGGCC
1 -TAGCCCCTTACAGTAACAGAGTATACTGGGCC
79254071 TAGCCC
1 TAGCCC
79254077 ATATCAGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
27 7 0.13
28 11 0.20
29 5 0.09
30 2 0.04
31 5 0.09
32 17 0.31
33 7 0.13
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (32 bp):
TAGCCCCTTACAGTAACAGAGTATACTGGGCC
Found at i:79254019 original size:60 final size:60
Alignment explanation
Indices: 79253942--79254142 Score: 284
Period size: 60 Copynumber: 3.4 Consensus size: 60
79253932 TTTAGTGTTA
* *
79253942 ACTGGGCCTTAGCCCATATCAATATTAATCTGGACCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
*
79254003 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
*
79254063 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAG-CCCTATACAAGT--C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCT-TAC-AGTAACAGAG-TAT
* *
79254122 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
79254143 CACAGTTGGG
Statistics
Matches: 131, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
58 3 0.02
59 26 0.20
60 91 0.69
61 11 0.08
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (60 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
Found at i:79254175 original size:19 final size:20
Alignment explanation
Indices: 79254132--79254177 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
79254122 ATTGGGCCTT
79254132 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
79254152 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
79254171 GCCCATA
1 GCCCATA
79254178 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:79257091 original size:45 final size:45
Alignment explanation
Indices: 79257027--79257116 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
79257017 TATTCAAACA
79257027 AATCATACTCATGACATCATATAAGGGCTAAACAAACATAGATAT
1 AATCATACTCATGACATCATATAAGGGCTAAACAAACATAGATAT
*
79257072 AATCATACTCATGACATCATATAATGGCTAAACAAACATAGATAT
1 AATCATACTCATGACATCATATAAGGGCTAAACAAACATAGATAT
79257117 TTGCATCACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.26
Consensus pattern (45 bp):
AATCATACTCATGACATCATATAAGGGCTAAACAAACATAGATAT
Done.