Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 249 of 318
Found at i:79257110 original size:22 final size:22
Alignment explanation
Indices: 79257040--79257110 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
79257030 CATACTCATG
*
79257040 ACATCATATAAGGGCTAAACAA
1 ACATCATATAATGGCTAAACAA
* ** *
79257062 ACATAGATATAAT--CATACTCATG
1 ACAT-CATATAATGGC-TAAACA-A
79257085 ACATCATATAATGGCTAAACAA
1 ACATCATATAATGGCTAAACAA
79257107 ACAT
1 ACAT
79257111 AGATATTTGC
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
21 1 0.03
22 19 0.54
23 14 0.40
24 1 0.03
ACGTcount: A:0.48, C:0.18, G:0.10, T:0.24
Consensus pattern (22 bp):
ACATCATATAATGGCTAAACAA
Found at i:79259158 original size:40 final size:40
Alignment explanation
Indices: 79259114--79259244 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
79259104 GGACTAAGAT
79259114 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
79259154 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
79259194 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
79259234 CCGAAGGCATT
1 CCGAAGGCATT
79259245 GTATGAGTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:79259265 original size:39 final size:38
Alignment explanation
Indices: 79259114--79259281 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 38
79259104 GGACTAAGAT
* *
79259114 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ACCGGGTTAAGTC
* * *
79259154 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAA-ACCGGGTTAAGTC
*
79259194 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACT-AAA-CCGGGTTAAGTC
** * *
79259234 CCGAAGGCATTGTATGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTA-AACCGGGTTAAGTC
79259273 CCGAAGGCA
1 CCGAAGGCA
79259282 CTTGAACGAG
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
39 31 0.28
40 78 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:79267102 original size:40 final size:40
Alignment explanation
Indices: 79267018--79267201 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
79267008 TTGAATGCTG
* * * *
79267018 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
79267057 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
79267098 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
79267138 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
79267178 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79267202 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:79267155 original size:80 final size:81
Alignment explanation
Indices: 79267018--79267198 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
79267008 TTGAATGCTG
* *
79267018 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
79267082 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
79267098 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
79267159 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
79267178 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
79267199 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:79270182 original size:46 final size:46
Alignment explanation
Indices: 79270115--79270429 Score: 313
Period size: 46 Copynumber: 6.8 Consensus size: 46
79270105 ATGTAACCCG
* * *
79270115 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA
*
79270161 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCA
* * * * * *
79270211 T--TTCA-CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA
* *
79270254 TACATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCA
* * * * * *
79270304 T--TTCA-CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA
*
79270347 TCCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGGCATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA
79270393 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
79270430 ATGCCCAAAT
Statistics
Matches: 218, Mismatches: 33, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 2 0.01
45 4 0.02
46 130 0.60
47 52 0.24
48 5 0.02
49 2 0.01
50 7 0.03
51 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCA
Found at i:79270231 original size:93 final size:93
Alignment explanation
Indices: 79270123--79270383 Score: 468
Period size: 93 Copynumber: 2.8 Consensus size: 93
79270113 CGTCCATAAG
* *
79270123 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79270188 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
79270216 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79270281 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
79270309 CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79270374 ACGAGTTCGG
66 ACGAGTTCGG
79270384 GCATTCGCAT
Statistics
Matches: 160, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 160 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:79270238 original size:47 final size:47
Alignment explanation
Indices: 79270170--79270332 Score: 210
Period size: 47 Copynumber: 3.5 Consensus size: 47
79270160 ATCCATAAGT
79270170 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
79270217 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGC-A--TACA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACATTTCA-C
79270263 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
79270310 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
79270333 CTAGGACATT
Statistics
Matches: 97, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 30 0.31
47 53 0.55
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:79277309 original size:30 final size:30
Alignment explanation
Indices: 79277275--79277335 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79277265 TTCCCGAGCC
79277275 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
79277305 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
79277335 T
1 T
79277336 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:79284520 original size:16 final size:17
Alignment explanation
Indices: 79284491--79284523 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
79284481 TAATAATACC
*
79284491 AAAAACCGACAAACAAA
1 AAAAACCGAAAAACAAA
79284508 AAAAACC-AAAAACAAA
1 AAAAACCGAAAAACAAA
79284524 GTTTAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.76, C:0.21, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAAACCGAAAAACAAA
Found at i:79288312 original size:48 final size:47
Alignment explanation
Indices: 79288260--79288374 Score: 106
Period size: 48 Copynumber: 2.4 Consensus size: 47
79288250 CTCATAAGTT
* * *
79288260 CCATAATCAGGAAGCTCATGTGAGCC-AATAATGGGTAGCTCTGAATAG
1 CCATAATCAGGAAGCTCAAGCGAGCCGAATAA--GGCAGCTCTGAATAG
** * * * *
79288308 CCATATATTGGGAAGTTTAAGCGAGCCGTATAAGGCAGCTCTGAATAT
1 CCATA-ATCAGGAAGCTCAAGCGAGCCGAATAAGGCAGCTCTGAATAG
79288356 CCATTAATCAGGAAGCTCA
1 CCA-TAATCAGGAAGCTCA
79288375 CAAAGAGCCT
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
48 30 0.59
49 17 0.33
50 4 0.08
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (47 bp):
CCATAATCAGGAAGCTCAAGCGAGCCGAATAAGGCAGCTCTGAATAG
Found at i:79288389 original size:26 final size:26
Alignment explanation
Indices: 79288359--79288409 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
79288349 TGAATATCCA
79288359 TTAATCAGGAAGCTCACAAAGAGCCT
1 TTAATCAGGAAGCTCACAAAGAGCCT
* *
79288385 TTAATCGGGAAGCTCACGAAGAGCC
1 TTAATCAGGAAGCTCACAAAGAGCC
79288410 ATATAACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (26 bp):
TTAATCAGGAAGCTCACAAAGAGCCT
Found at i:79291193 original size:96 final size:95
Alignment explanation
Indices: 79291018--79291299 Score: 438
Period size: 96 Copynumber: 2.9 Consensus size: 95
79291008 GTTAGGGTAC
79291018 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG-CATTGTTATGAGAGCTAGTGTAAG
*
79291083 ACCATGTTTGGGACATGGCATCGGCCTCAAT
65 ACCATGTCTGGGACATGGCATCGGCCTCAAT
* *
79291114 ATGTGAGCCAGTGAAAGACCATGTTTGGAACATGGCATCAGCATTATTATGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GCATTGTTATGAGAGCTAGTGTAAG
* * *
79291179 ACTATGTCTAGGACATGGCATCAGCCTCAAT
65 ACCATGTCTGGGACATGGCATCGGCCTCAAT
* * * *
79291210 ATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTACGGGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCA-TCGCATTGTTATGAGAGCTAGTGTAAG
*
79291275 ACCATGTCTGGGACATAGCATCGGC
65 ACCATGTCTGGGACATGGCATCGGC
79291300 ATCTTACCCT
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
96 166 0.99
97 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (95 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGCATTGTTATGAGAGCTAGTGTAAGA
CCATGTCTGGGACATGGCATCGGCCTCAAT
Found at i:79291301 original size:48 final size:48
Alignment explanation
Indices: 79291022--79291301 Score: 301
Period size: 48 Copynumber: 5.8 Consensus size: 48
79291012 GGGTACATGT
* *
79291022 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTATGA
* * * * * *
79291070 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTATGA
* *
79291118 GAGCCAGTGAAAGACCATGTTTGGAACATGGCATCAGCATTATTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTATGA
* * * * * * * *
79291166 GAGCTAGTGTAAGACTATGTCTAGG-ACATGGCATCAGCCTCAATATGT
1 GAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATTATTATGA
* * * * *
79291214 GAGCCAATGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTACGG
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTATGA
* * * *
79291262 GAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCAT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
79291302 CTTACCCTTT
Statistics
Matches: 188, Mismatches: 42, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
47 3 0.02
48 182 0.97
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTATTATGA
Found at i:79292354 original size:21 final size:21
Alignment explanation
Indices: 79292330--79292384 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
79292320 GTTAAGAGGA
79292330 CACACGGGCGTGTCACCCTCC
1 CACACGGGCGTGTCACCCTCC
** ** *
79292351 CACACGGATGTGTTGCCCTTC
1 CACACGGGCGTGTCACCCTCC
*
79292372 CACATGGGCGTGT
1 CACACGGGCGTGT
79292385 GCCTCTGGTT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.15, C:0.36, G:0.27, T:0.22
Consensus pattern (21 bp):
CACACGGGCGTGTCACCCTCC
Found at i:79292704 original size:47 final size:48
Alignment explanation
Indices: 79292632--79292762 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 48
79292622 CTCTATCGAT
* * * *
79292632 AAGTACATATACCATGACCAATAGCCAAATCAAGGTAACTTATC-ACG
1 AAGTACCTATACCATGGCCTATAGCCAAATCAAGGTAACTCATCTACG
* * **
79292679 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCCTCTTTG
1 AAGTACCTATACCATGGCCTATAGCCAAATCAAGGTAACTCATCTACG
79292727 AA-TACCTATACCATGGCCTATAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCTATAGCCAAATCAAGGTA
79292763 TCATTTGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 71 0.96
48 3 0.04
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.24
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCTATAGCCAAATCAAGGTAACTCATCTACG
Found at i:79293378 original size:30 final size:30
Alignment explanation
Indices: 79293320--79293382 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
79293310 CCCCTAGTAG
*
79293320 CCCATATTTTAAATTTATTCACATATTAAAC
1 CCCATATTTTAAATTTATTCACAAATT-AAC
*
79293351 CCCATATTTTCACA-TT-TTCACAAATTAAC
1 CCCATATTTT-AAATTTATTCACAAATTAAC
79293380 CCC
1 CCC
79293383 TAATTGACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 12 0.41
32 2 0.07
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (30 bp):
CCCATATTTTAAATTTATTCACAAATTAAC
Found at i:79295391 original size:429 final size:429
Alignment explanation
Indices: 79294590--79297162 Score: 4894
Period size: 429 Copynumber: 6.0 Consensus size: 429
79294580 GACACTGGTT
*
79294590 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCACTAATCATATCAACCCTGTGGATC
1 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
*
79294655 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCAACCACATAAATCTTCATA
66 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
*
79294720 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGGAAATACT
131 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
*
79294785 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTAAATAACT
196 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
*
79294850 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTATTGAAGTGTAGCTTTGTACCTAATGC
261 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
*
79294915 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTTAAACAATAGAAATAG
326 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
79294980 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
391 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
79295019 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
1 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
* *
79295084 TTACTCTTGCTAAGCTCAATCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
66 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
79295149 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
131 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
*
79295214 TTTCCCACGTACTTATGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
196 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
79295279 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
261 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
*
79295344 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGACCTCTATCTCAAACAATAGAAATAG
326 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
79295409 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
391 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
* *
79295448 TCAAACTATCACGAATCATTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCTTGTGGATC
1 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
*
79295513 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATATTCATA
66 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
*
79295578 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATATGTGAATTCAATCAATGGCAAATACT
131 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
*
79295643 TTTCCCAGGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
196 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
79295708 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
261 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
*
79295773 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGACCTCTATCTCAAACAATAGAAATAG
326 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
79295838 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
391 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
* *
79295877 TCAAACTATCACGAATCATTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCTTGTGGATC
1 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
*
79295942 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATATTCATA
66 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
*
79296007 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATATGTGAATTCAATCAATGGCAAATACT
131 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
*
79296072 TTTCCCAGGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
196 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
79296137 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
261 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
79296202 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
326 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
79296267 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
391 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
79296306 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
1 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
79296371 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
66 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
*
79296436 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGGAAATACT
131 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
79296501 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
196 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
79296566 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
261 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
*
79296631 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCAATCTCAAACAATAGAAATAG
326 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
79296696 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
391 GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
79296735 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
1 TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
79296800 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
66 TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
*
79296865 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGGAAATACT
131 CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
*
79296930 TTTCCCATGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
196 TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
*
79296995 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTAAAGTGTAGCTTTGTACCTAATGC
261 CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
*
79297060 ATCTTGTAGTTTCTTCTAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
326 ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
*
79297125 TTACACCGTGCAACCTCATAATCTGAGAAATATACAAC
391 GTACACCGTGCAACCTCATAATCTGAGAAATATACAAC
79297163 TCAGCAAGTT
Statistics
Matches: 2113, Mismatches: 31, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
429 2113 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (429 bp):
TCAAACTATCACGAATCACTTTCACTTTTTCTTCAGTCTCTCTAATCATATCAACCCTGTGGATC
TTATTCTTGCTAAGCTCAGTCTAGTACAACAGTGTTCTACATTTTCGACCACATAAATCTTCATA
CGGTGCCATTTTAATGCTCGATTGAAAACTGTTATTATACGTGAATTCAATCAATGGCAAATACT
TTTCCCACGTACTTACGAACTCAAGTATGCAACATCTCAACATATCCTCAAGTATCTGAATAACT
CGCTCGGATTGACCATCTATTTGTGAATGAAATGCAGTACTGAAGTGTAGCTTTGTACCTAATGC
ATCTTGTAGTTTCTTCCAAAACTGCGATGTAAACCTTGGATCTCTATCTCAAACAATAGAAATAG
GTACACCGTGCAACCTCATAATCTGAGAAATATACAACC
Found at i:79298869 original size:26 final size:26
Alignment explanation
Indices: 79298838--79298890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
79298828 GTCTGTAATC
*
79298838 TATACACATTCTCATCGTGCCATCTT
1 TATACACATTCACATCGTGCCATCTT
79298864 TATACACATTCACATCGTGCCATCTT
1 TATACACATTCACATCGTGCCATCTT
79298890 T
1 T
79298891 CTTTTTCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.08, T:0.38
Consensus pattern (26 bp):
TATACACATTCACATCGTGCCATCTT
Found at i:79301466 original size:12 final size:12
Alignment explanation
Indices: 79301449--79301481 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
79301439 ATAGACTAGG
79301449 CCACACGGCCGA
1 CCACACGGCCGA
79301461 CCACACGGCCGA
1 CCACACGGCCGA
79301473 CCACA-GGCC
1 CCACACGGCC
79301482 CATGTGTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.24, C:0.52, G:0.24, T:0.00
Consensus pattern (12 bp):
CCACACGGCCGA
Found at i:79302323 original size:55 final size:55
Alignment explanation
Indices: 79302264--79302367 Score: 199
Period size: 55 Copynumber: 1.9 Consensus size: 55
79302254 CTTTATCATG
79302264 TCACATACCATGCTGTAAACACAAAAAATAATATTAAAATAAACTTTCACACATA
1 TCACATACCATGCTGTAAACACAAAAAATAATATTAAAATAAACTTTCACACATA
*
79302319 TCACATACCATGCTGTAAACACAAAAAATAATATTAAAATAAATTTTCA
1 TCACATACCATGCTGTAAACACAAAAAATAATATTAAAATAAACTTTCA
79302368 ACCTCGGATT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (55 bp):
TCACATACCATGCTGTAAACACAAAAAATAATATTAAAATAAACTTTCACACATA
Found at i:79304111 original size:26 final size:26
Alignment explanation
Indices: 79304074--79304157 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
79304064 TGATACAAAT
* *
79304074 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
79304100 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
79304126 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
79304152 TGATAA
1 TGATAA
79304158 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:79305730 original size:21 final size:20
Alignment explanation
Indices: 79305704--79305746 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
79305694 CATGTTTGAC
79305704 TGTTGTTATT-TACTGCATGCA
1 TGTTGTTATTAT-CTG-ATGCA
79305725 TGTTGTTATTATCTGATGCA
1 TGTTGTTATTATCTGATGCA
79305745 TG
1 TG
79305747 GGATTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 13 0.62
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (20 bp):
TGTTGTTATTATCTGATGCA
Found at i:79308772 original size:26 final size:26
Alignment explanation
Indices: 79308743--79308795 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
79308733 TTTACAGTTT
79308743 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
79308769 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
79308795 T
1 T
79308796 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:79310252 original size:26 final size:26
Alignment explanation
Indices: 79310219--79310326 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
79310209 TGATACAAAT
79310219 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
79310245 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79310271 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79310297 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79310323 TGAT
1 TGAT
79310327 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79316077 original size:26 final size:26
Alignment explanation
Indices: 79316044--79316151 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
79316034 TGATACAAAT
79316044 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
79316070 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79316096 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79316122 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79316148 TGAT
1 TGAT
79316152 GGGAATTCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79332025 original size:26 final size:26
Alignment explanation
Indices: 79331996--79332103 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
79331986 TGATGCAAAT
*
79331996 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79332022 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79332048 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79332074 TGACAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79332100 TGAT
1 TGAT
79332104 GGATTTATGT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79342034 original size:43 final size:43
Alignment explanation
Indices: 79341970--79342053 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
79341960 AACATGTAAC
* *
79341970 ACATCCCTAATGAACTCGGACCTCTCAACGAGCTCGGATGCTT
1 ACATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
*
79342013 ACATCCATAATGAACTTGGACCTCTCAACGAGCTCAGATGC
1 ACATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGC
79342054 CACATATCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
ACATCCATAATGAACTCGGACCTCTCAACGAGCTCAGATGCTT
Found at i:79348360 original size:131 final size:132
Alignment explanation
Indices: 79347896--79348550 Score: 465
Period size: 132 Copynumber: 4.9 Consensus size: 132
79347886 AGAAAATACA
* * * * ** *
79347896 AGTGAAATTTCGAAGAGACATTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGA-TA
1 AGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACAC-ATTA
* *** * * *
79347960 GGGCACTATTCCCCGAATTGCCAAACATCGAACATTT--CTTCAGTTTTCAAGAGTTTTTAGAAA
65 GGGCACGATTCCGAAAATTGCCAAACATCAAAC-TTTGCCTTCA-TTTTAAAGAATTTTTA-AAA
*
79348023 -ACATG
127 GACACG
* ** * * ** *
79348028 AGTGAAA-TTCTAAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGA-T
1 AGTGAAATTTC-AAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACAC-ATT
* * * * ** **
79348091 AGGGCACGATTCTCG--AATTGCCAAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAAA
64 AGGGCACGATTC-CGAAAATTGCCAAACATCAAACTTTGCCTTCATTTTAAA-GAATTT-TT--A
* *
79348154 AAAAACATG
124 AAAGACACG
* * * ** ** *
79348163 AATGAAAACTT-AAAGGAACGTTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGA-T
1 AGTG-AAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACAC-ATT
* * ** * * *
79348226 AGGGCATGATTCC-AAAATTGTCAAACA-CCGAGTATTGCCTTCATTTTAAAGGATTTTTAGAAG
64 AGGGCACGATTCCGAAAATTGCCAAACATCAAACT-TTGCCTTCATTTTAAAGAATTTTTAAAAG
79348289 AC-CTG
128 ACAC-G
* *
79348294 AGTGAAATTTCAAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACATTAG
1 AGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACATTAG
* ** * * *
79348359 GGCGCGATTCCGCGAATTGCCAAATATCAAACTTTTCCTTCATTTTAAAGAATTTTTAAAAGGCA
66 GGCACGATTCCGAAAATTGCCAAACATCAAACTTTGCCTTCATTTTAAAGAATTTTTAAAAGACA
79348424 CG
131 CG
** * *
79348426 AGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAG
1 AGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACATTAG
* * * * * * *
79348491 GGCACTATTCCGGAAATTGCCAAATATCGAA-TCTCGTCTTCGTTTTAAAGAATTTTTAAA
66 GGCACGATTCCGAAAATTGCCAAACATCAAACT-TTGCCTTCATTTTAAAGAATTTTTAAA
79348551 TGAATACTTA
Statistics
Matches: 417, Mismatches: 85, Indels: 42
0.77 0.16 0.08
Matches are distributed among these distances:
130 7 0.02
131 90 0.22
132 209 0.50
133 9 0.02
134 11 0.03
135 86 0.21
136 3 0.01
137 2 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (132 bp):
AGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACATTAG
GGCACGATTCCGAAAATTGCCAAACATCAAACTTTGCCTTCATTTTAAAGAATTTTTAAAAGACA
CG
Found at i:79348407 original size:267 final size:267
Alignment explanation
Indices: 79347916--79348514 Score: 588
Period size: 266 Copynumber: 2.3 Consensus size: 267
79347906 CGAAGAGACA
* ** ** **
79347916 TTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGATAGGGCACTATTCCCCGAATTGC
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTCCCAAAATTGC
* * *
79347981 CAAACATCGAACATTTCTTCAGTTTTCAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGA
66 CAAACACCGAACATTCCTTCAGTTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGA
* * * * *
79348046 TCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCGAATTG
131 TATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCGCGAATTG
* **
79348111 CCAAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTAA
196 CCAAACATCAAACATCGCATTCATTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTAA
79348176 AGGAACG
261 AGGAACG
79348183 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCA-TGATT-CCAAAATTG
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACT-ATTCCCAAAATTG
* ** * *
79348246 TCAAACACCGAGTATTGCCTTCA-TTTTAAAG-GATTTTTAGAAGACCTGAGTGAAATT-TCAAA
65 CCAAACACCGAACATT-CCTTCAGTTTTAAAGAG-TTTTTAGAAAACATGAGTGAAATTCT-AAA
* * * * ** *
79348308 GGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACAC-ATTAGGGCGCGATTCCGC
127 GGGATATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGA-TAGGGCACGATT-CGC
* * ** * ** ** * *
79348372 GAATTGCCAAATATCAAACTTTTCCTTCATTTTAAA-GAATTT-TT--AAAAGGCACGAGTGAAA
190 GAATTGCCAAACATCAAACATCGCATTCATTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAA
** * * **
79348433 TTTTGAAGGGATA
255 ACTTAAAGGAACG
* ** * * **
79348446 TTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCCGGAAATTGC
1 TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTCCCAAAATTGC
79348511 CAAA
66 CAAA
79348515 TATCGAATCT
Statistics
Matches: 269, Mismatches: 55, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
263 67 0.25
264 12 0.04
265 5 0.02
266 103 0.38
267 82 0.30
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (267 bp):
TTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACTATTCCCAAAATTGC
CAAACACCGAACATTCCTTCAGTTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGA
TATTCGATCATTTTGAACAAACGAAAAAGCGCAACCCAACACGATAGGGCACGATTCGCGAATTG
CCAAACATCAAACATCGCATTCATTTTAAAGGGTTTTCTTAAAAAAAACATGAATGAAAACTTAA
AGGAACG
Found at i:79351808 original size:221 final size:221
Alignment explanation
Indices: 79351498--79352486 Score: 1464
Period size: 221 Copynumber: 4.5 Consensus size: 221
79351488 CCCCTGCCAA
* * * * * *
79351498 TACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCCGCC-GCTACAGAGACGACAAATCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* ** *
79351562 TATCTTCGATCTACTCTTTGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGT
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* *
79351627 CACTACAAAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCT
131 CGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCT
*
79351692 GCTATCTTCGATATGCTCTCCGCCGC
196 GCTATCTTCGATCTGCTCTCCGCCGC
* * *
79351718 TACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCCCCACCTGATACAGAGATGCCAAATCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* *
79351783 TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAAGCTGCTATCTTCGATCTGCTCTCCGC
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * *
79351848 CGCTACAGAGACGA-CAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATC
131 CGCTACAGAGAC-ACCAAATCTGTTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATC
* * *
79351912 TGCTATCTTTGATCTACTCTCCGCCGT
195 TGCTATCTTCGATCTGCTCTCCGCCGC
79351939 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* * * * **
79352004 TATATTCGATCTGCTCTTCGCCGCTACAAAGACGCCAAATCTGCTATCTTCAATCTGCTCTTTGC
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* ** * * * *
79352069 TGCTACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCTTCAGAGATGCCAAATCT
131 CGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCT
79352134 GCTATCTTCGATCTGCTCTCCGCCGC
196 GCTATCTTCGATCTGCTCTCCGCCGC
* * * *
79352160 TACGGGGACGCCAAATCTGTTAACTTCGATCTACTCCCCGCCTGATACAGAGATGCCAAATCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
* *
79352225 TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGC
66 TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
* * *
79352290 CGCTACAGAGACACCAAATCTGCTATATTCGATCTGCTCTCTGCCACTACAGAGACGCCAAATCT
131 CGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCT
* *
79352355 GCTATCTTTGATCTGCTCTCCTCCGC
196 GCTATCTTCGATCTGCTCTCCGCCGC
* ** *
79352381 TACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTTCGCC--ACTACAGAGACGCCAAATCTG
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGA-TACAGAGATGCCAAATCTG
79352444 CTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
65 CTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCT
79352487 ATTATCTGCT
Statistics
Matches: 688, Mismatches: 77, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
219 1 0.00
220 96 0.14
221 590 0.86
222 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (221 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCTGC
TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGC
CGCTACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCACTACAGAGACGCCAAATCT
GCTATCTTCGATCTGCTCTCCGCCGC
Found at i:79352493 original size:44 final size:44
Alignment explanation
Indices: 79351498--79352486 Score: 1375
Period size: 44 Copynumber: 22.4 Consensus size: 44
79351488 CCCCTGCCAA
*
79351498 TACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * **
79351542 TACAGAGACGACAAATCTGCTATCTTCGATCTACTCTTTGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
79351586 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGTCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
79351630 TACAAAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
*
79351674 TACAGAGACGCCAAATCTGCTATCTTCGATATGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * * * *
79351718 TACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCCCCACCTGA
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC-GC
*
79351763 TACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
79351807 TACAGAGATGCCAAAGCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * *
79351851 TACAGAGACGACAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
79351895 TACAGAGATGCCAAATCTGCTATCTTTGATCTACTCTCCGCCGT
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * *
79351939 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGCCTGA
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC-GC
* * *
79351984 TACAGAGATGCCAAATCTGCTATATTCGATCTGCTCTTCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * ** *
79352028 TACAAAGACGCCAAATCTGCTATCTTCAATCTGCTCTTTGCTGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * *
79352072 TACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
79352116 TTCAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * * * * *
79352160 TACGGGGACGCCAAATCTGTTAACTTCGATCTACTCCCCGCCTGA
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCC-GC
*
79352205 TACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
79352249 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
79352293 TACAGAGACACCAAATCTGCTATATTCGATCTGCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* *
79352337 TACAGAGACGCCAAATCTGCTATCTTTGATCTGCTCTCCTCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
* * * *
79352381 TACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTTCGCCAC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
79352425 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
79352469 TACAGAGACGCCAAATCT
1 TACAGAGACGCCAAATCT
79352487 ATTATCTGCT
Statistics
Matches: 829, Mismatches: 113, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
44 716 0.86
45 113 0.14
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCGC
Found at i:79353730 original size:5 final size:5
Alignment explanation
Indices: 79353720--79353796 Score: 72
Period size: 5 Copynumber: 15.4 Consensus size: 5
79353710 TGGCCTATCA
*
79353720 TTTTC TTTTC TTTTC TTCT- TTTTC TTTTTC TTCTT- TATTTC -TTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TT-TTC T-TTTC TTTTC
*
79353765 TTTTC TTTTC TTTTC TTCT- TTTTC TTCTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TT
79353797 CTTTTTTTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
4 10 0.17
5 37 0.62
6 13 0.22
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:79353744 original size:9 final size:8
Alignment explanation
Indices: 79353720--79353804 Score: 71
Period size: 9 Copynumber: 9.5 Consensus size: 8
79353710 TGGCCTATCA
79353720 TTTTCTTTT
1 TTTTC-TTT
79353729 CTTTTCTTCT
1 -TTTTCTT-T
79353739 TTTTCTTT
1 TTTTCTTT
79353747 TTCTTCTTT
1 TT-TTCTTT
*
79353756 ATTTCTTT
1 TTTTCTTT
79353764 CTTTTCTTTT
1 -TTTTC-TTT
79353774 CTTTTCTTCT
1 -TTTTCTT-T
79353784 TTTTCTTCT
1 TTTTCTT-T
*
79353793 TCTTCTTT
1 TTTTCTTT
79353801 TTTT
1 TTTT
79353805 TTTGAAGATC
Statistics
Matches: 66, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
8 13 0.20
9 37 0.56
10 16 0.24
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTCTTT
Found at i:79353750 original size:15 final size:15
Alignment explanation
Indices: 79353725--79353807 Score: 95
Period size: 15 Copynumber: 5.7 Consensus size: 15
79353715 TATCATTTTC
79353725 TTTTC-TTTTCTTCT
1 TTTTCTTTTTCTTCT
79353739 TTTTCTTTTTCTTCTT
1 TTTTCTTTTTCTTC-T
79353755 TATTTCTTTCTT-TTC-
1 T-TTTCTTT-TTCTTCT
79353770 TTTTC-TTTTCTTCT
1 TTTTCTTTTTCTTCT
*
79353784 TTTTCTTCTTCTTCT
1 TTTTCTTTTTCTTCT
79353799 TTTT-TTTTT
1 TTTTCTTTTT
79353808 GAAGATCTCA
Statistics
Matches: 60, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
12 2 0.03
13 5 0.08
14 18 0.30
15 21 0.35
16 2 0.03
17 10 0.17
18 2 0.03
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTCTTTTTCTTCT
Found at i:79356378 original size:19 final size:19
Alignment explanation
Indices: 79356354--79356395 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
79356344 TGGGAAATTT
79356354 AATGCAAATG-ATGCGATG
1 AATGCAAATGCATGCGATG
*
79356372 CAATGCAAATGCATGTGATG
1 -AATGCAAATGCATGCGATG
79356392 AATG
1 AATG
79356396 GAAAGGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGCGATG
Found at i:79358469 original size:132 final size:132
Alignment explanation
Indices: 79357932--79358587 Score: 480
Period size: 132 Copynumber: 5.0 Consensus size: 132
79357922 TAGAAAATAC
* * * ** ** * *
79357932 GAGTGAAATTTCGAAGAGACATTCGATTATTTTGAACAAACGGGGGATTGCAACCCAGCACGATA
1 GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
* * * * *
79357997 GGGCACTATTCCCCG-AATTGCCAAACATCGAACAT-TT--CTTCCGTTTTCAAGAGTTTTTAGA
66 GGGCACGATT-CCGGAAATTGCCAAATATC-AA-ATCTTGCCTT-CGTTTTAAAGAATTTTTA-A
*
79358058 AA-ACAT
126 AAGACCT
* ** * ** * *
79358064 GAGTGAAA-TTCTAAAGGGATCTTCGATCGTTTTGAACAAATGAA-AAAGCGCAACCCAGCACGA
1 GAGTGAAATTTC-AAAGGGATATTCGATTATTTTGAACAAA-CAAGAAATTGCAACCCAACACGT
* * * **
79358127 TAGGGCACGATTCTC-G-AATTGCCAAACATCGAACATC--GCATTTGTTTTAAAGGGTTTTCTT
64 TAGGGCACGATTC-CGGAAATTGCCAAATATC-AA-ATCTTGCCTTCGTTTTAAA-GAATTT-TT
* *
79358188 AAAAAAAACAT
124 --AAAAGACCT
* * * * * ** * *
79358199 GAATGAAAACTT-AAAGGAACATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGAT
1 GAGTG-AAATTTCAAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTT
* ** * * * * * * *
79358263 AGGGCATGA-TCCCCAAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAAAAGA
65 AGGGCACGATTCCGGAAATTGCCAAATATCAAATCTTGCCTTCGTTTTAAAGAATTTTTAAAAGA
79358327 CCT
130 CCT
* *
79358330 GAGTGAAATTTCAAAGGGATATTTGATTATTTTGAGCAAACAAGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
* *
79358395 GGGCGCGATTCCGCG-AATTGCCAAATATCAAA-CTTTGCCTTCATTTTAAAGAATTTTTAAAAG
66 GGGCACGATTCCG-GAAATTGCCAAATATCAAATC-TTGCCTTCGTTTTAAAGAATTTTTAAAAG
*
79358458 GCAC-
129 AC-CT
** **
79358462 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGCGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
* * * *
79358527 GGGCACTATTCCGGAAATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTTAAA
66 GGGCACGATTCCGGAAATTGCCAAATATCAAATCTTGCCTTCGTTTTAAAGAATTTTTAAA
79358588 TGAATACTTA
Statistics
Matches: 422, Mismatches: 77, Indels: 50
0.77 0.14 0.09
Matches are distributed among these distances:
130 5 0.01
131 94 0.22
132 216 0.51
133 8 0.02
134 12 0.03
135 82 0.19
136 3 0.01
137 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (132 bp):
GAGTGAAATTTCAAAGGGATATTCGATTATTTTGAACAAACAAGAAATTGCAACCCAACACGTTA
GGGCACGATTCCGGAAATTGCCAAATATCAAATCTTGCCTTCGTTTTAAAGAATTTTTAAAAGAC
CT
Found at i:79361603 original size:5 final size:5
Alignment explanation
Indices: 79361593--79361620 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
79361583 CTGTGTGATC
79361593 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
79361621 CACAGTCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:79363033 original size:18 final size:17
Alignment explanation
Indices: 79363012--79363063 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
79363002 ACTTTGGGTT
79363012 TTTTATAAATATTTTGAA
1 TTTTA-AAATATTTTGAA
79363030 TTTTAAAA-A--TT--A
1 TTTTAAAATATTTTGAA
79363042 TTTTAAAAATATTTTGAA
1 TTTT-AAAATATTTTGAA
79363060 TTTT
1 TTTT
79363064 TTTTGTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 12
0.70 0.00 0.30
Matches are distributed among these distances:
12 5 0.18
13 4 0.14
14 3 0.11
16 3 0.11
17 3 0.11
18 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (17 bp):
TTTTAAAATATTTTGAA
Found at i:79373474 original size:21 final size:21
Alignment explanation
Indices: 79373448--79373580 Score: 124
Period size: 21 Copynumber: 6.3 Consensus size: 21
79373438 TGAATATGCC
* * *
79373448 AACAGAAGCTAACAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * *
79373469 AACAGAAACTCATAAGTGTTA
1 AACAGAAGCTCATAAGAGCTA
79373490 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * *
79373511 AACAAAAACTCGTAAGAGATG
1 AACAGAAGCTCATAAGAGCTA
* * *
79373532 AACAGAAGCTCGTAAGAGATG
1 AACAGAAGCTCATAAGAGCTA
79373553 AACAGAAGCTCGA-AAGAGCTA
1 AACAGAAGCTC-ATAAGAGCTA
79373574 AACAGAA
1 AACAGAA
79373581 AGTAAAACAT
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
21 92 1.00
ACGTcount: A:0.49, C:0.17, G:0.21, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:79373496 original size:42 final size:42
Alignment explanation
Indices: 79373448--79373580 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 42
79373438 TGAATATGCC
* * * *
79373448 AACAGAAGCTAACAAGAGCTGAACAGAAACTCATAAGTGTTA
1 AACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGAGATA
* * * *
79373490 AACAGAAGCTCATAAGAGCTAAACAAAAACTCGTAAGAGATG
1 AACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGAGATA
* * * *
79373532 AACAGAAGCTCGTAAGAGATGAACAGAAGCTCGA-AAGAGCTA
1 AACAGAAGCTCATAAGAGCTGAACAGAAACTC-ATAAGAGATA
79373574 AACAGAA
1 AACAGAA
79373581 AGTAAAACAT
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.49, C:0.17, G:0.21, T:0.14
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTGAACAGAAACTCATAAGAGATA
Found at i:79394498 original size:17 final size:17
Alignment explanation
Indices: 79394476--79394512 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
79394466 ATGTCTAATA
* *
79394476 TTATCTAGAGTTGTCGT
1 TTATCTAGAGGTGTCAT
79394493 TTATCTAGAGGTGTCAT
1 TTATCTAGAGGTGTCAT
79394510 TTA
1 TTA
79394513 CACTGACCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (17 bp):
TTATCTAGAGGTGTCAT
Found at i:79397313 original size:16 final size:16
Alignment explanation
Indices: 79397280--79397309 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
79397270 TTATTAATAT
79397280 TTTTATTTATTTCTTA
1 TTTTATTTATTTCTTA
79397296 TTTTA-TTATTTCTT
1 TTTTATTTATTTCTT
79397310 TATTACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTATTTATTTCTTA
Found at i:79399618 original size:30 final size:30
Alignment explanation
Indices: 79399584--79399644 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79399574 TCCTTAACTC
*
79399584 AAACTTTGGCAAAATTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
79399614 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
79399644 A
1 A
79399645 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:79402491 original size:43 final size:43
Alignment explanation
Indices: 79402407--79402492 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
79402397 TATGTGATTC
* *
79402407 CGATATGTGTTTACGAGTAAGACCCTGTCTGGGAAAGTGGCAT
1 CGATATGTGGTTACGAGTAAGACCCTGTCTAGGAAAGTGGCAT
* *
79402450 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGACATTGGCAT
1 CGATATGTGGTTACGA-GTAAGACC-CTGTCTAGGAAAGTGGCAT
79402493 TGTACAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 35 0.95
44 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCCTGTCTAGGAAAGTGGCAT
Found at i:79407423 original size:41 final size:40
Alignment explanation
Indices: 79407263--79407423 Score: 252
Period size: 40 Copynumber: 4.0 Consensus size: 40
79407253 AAAAGGTCGT
79407263 TATAGATCGAGCATTAGCGGCGCTTTTTAAAAAACGCCGC
1 TATAGATCGAGCATTAGCGGCGCTTTTTAAAAAACGCCGC
* *
79407303 TATAGATCGAGTATTAGCGGCGCTTTTTAAAAAACACCGC
1 TATAGATCGAGCATTAGCGGCGCTTTTTAAAAAACGCCGC
*
79407343 TATAGATCTAGCATTAGCGGCGCTTTTTAAAAAACGCCGC
1 TATAGATCGAGCATTAGCGGCGCTTTTTAAAAAACGCCGC
* *
79407383 TATAGAATCGAGCATTA-CTGGCGCTTTCTAAAAAATGCCGC
1 TATAG-ATCGAGCATTAGC-GGCGCTTTTTAAAAAACGCCGC
79407424 AAAAAACATT
Statistics
Matches: 111, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
40 81 0.73
41 30 0.27
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (40 bp):
TATAGATCGAGCATTAGCGGCGCTTTTTAAAAAACGCCGC
Found at i:79407854 original size:7 final size:7
Alignment explanation
Indices: 79407844--79407911 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
79407834 CTTAAATACA
79407844 AAATCCT
1 AAATCCT
79407851 AAATCCT
1 AAATCCT
*
79407858 AAATCAT
1 AAATCCT
*
79407865 AAATCAT
1 AAATCCT
*
79407872 AAAACTCT
1 AAATC-CT
79407880 AAA-CCTT
1 AAATCC-T
79407887 AAA-CCTT
1 AAATCC-T
*
79407894 AAACCCT
1 AAATCCT
79407901 AAATCCT
1 AAATCCT
79407908 AAAT
1 AAAT
79407912 AATAAAACAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
6 1 0.02
7 47 0.87
8 6 0.11
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATCCT
Found at i:79407868 original size:21 final size:21
Alignment explanation
Indices: 79407836--79407925 Score: 58
Period size: 21 Copynumber: 4.2 Consensus size: 21
79407826 CTTAAGCACT
*
79407836 TAAATACA-AAATCCTAAATCC
1 TAAAT-CATAAATCCTAAAACC
*
79407857 TAAATCATAAATCATAAAACTC
1 TAAATCATAAATCCTAAAAC-C
* * *
79407879 TAAACCTTAAA-CCTTAAACCC
1 TAAATCATAAATCC-TAAAACC
* **
79407900 TAAATCCTAAATAATAAAACAC
1 TAAATCATAAATCCTAAAAC-C
79407922 TAAA
1 TAAA
79407926 CTATAGACAC
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
20 2 0.04
21 31 0.58
22 20 0.38
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAATCATAAATCCTAAAACC
Found at i:79412536 original size:23 final size:23
Alignment explanation
Indices: 79412506--79412699 Score: 189
Period size: 23 Copynumber: 8.5 Consensus size: 23
79412496 TGGTTGCTGC
*
79412506 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
*
79412529 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
* *
79412552 TGTTTAAATATTGCAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
** * *
79412575 TGTTTAGTTGCTGAAAATTG-AG
1 TGTTTAAATGTTGTAAATTGAAG
* * *
79412597 ATGTTTTATTGTTGT-AATTGAGG
1 -TGTTTAAATGTTGTAAATTGAAG
* *
79412620 TGTATAAATGTTGTTAATTG-AG
1 TGTTTAAATGTTGTAAATTGAAG
* *
79412642 ATG-CTAAAGTGTTGTAAATTGAAA
1 -TGTTTAAA-TGTTGTAAATTGAAG
79412666 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGTTGTAAATTGAAG
*
79412689 TGCTTAAATGT
1 TGTTTAAATGT
79412700 AGCACCCCAA
Statistics
Matches: 141, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
22 23 0.16
23 113 0.80
24 5 0.04
ACGTcount: A:0.33, C:0.03, G:0.22, T:0.42
Consensus pattern (23 bp):
TGTTTAAATGTTGTAAATTGAAG
Found at i:79413649 original size:27 final size:27
Alignment explanation
Indices: 79413609--79413668 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
79413599 AGCATGGCTG
*
79413609 CCAGAACAAATAAT-GTGACAGAGTCA
1 CCAGAACAAATAATCGTGACAGAGCCA
* **
79413635 CCAGATACAGATAATCGTGGGAGAGCCA
1 CCAGA-ACAAATAATCGTGACAGAGCCA
79413663 CCAGAA
1 CCAGAA
79413669 TAGATATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.18
27 9 0.32
28 14 0.50
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (27 bp):
CCAGAACAAATAATCGTGACAGAGCCA
Found at i:79413673 original size:27 final size:28
Alignment explanation
Indices: 79413609--79413692 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 28
79413599 AGCATGGCTG
* * *
79413609 CCAGA-ACAAATAAT-GTGACAGAGTCA
1 CCAGATACAGATAATCGTGGCAGAGCCA
*
79413635 CCAGATACAGATAATCGTGGGAGAGCCA
1 CCAGATACAGATAATCGTGGCAGAGCCA
* * * *
79413663 CCAGA-ATAGATATTTGTGGCATAGCCA
1 CCAGATACAGATAATCGTGGCAGAGCCA
79413690 CCA
1 CCA
79413693 TAACGCTTCC
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.11
27 28 0.60
28 14 0.30
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATAATCGTGGCAGAGCCA
Found at i:79415350 original size:26 final size:26
Alignment explanation
Indices: 79415314--79415397 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
79415304 CATGAAATTC
79415314 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
79415340 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
79415366 TTGTCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
79415392 TTATCA
1 TTATCA
79415398 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:79415765 original size:23 final size:23
Alignment explanation
Indices: 79415739--79416432 Score: 397
Period size: 23 Copynumber: 30.3 Consensus size: 23
79415729 CATTAAATGT
*
79415739 TGTAAATTGAAGTGTTTAAGTAC
1 TGTAAATTGAAGTGTTTAAGTGC
79415762 TGTAAATTGAAGTGTTT-AGTTGC
1 TGTAAATTGAAGTGTTTAAG-TGC
* * *
79415785 TGGAAATTG-AGATGTTTTA-TCGT
1 TGTAAATTGAAG-TGTTTAAGT-GC
* * * *
79415808 TGT-AATTGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
79415830 TGTTAATTG-AGATGTTAAAGTAC
1 TGTAAATTGAAG-TGTTTAAGTGC
* * *
79415853 AGCAAATTGAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
*
79415876 TGTAAATTGAAGTGTTAAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
79415899 TGCAAATTGGAA-TGTTAAAATGC
1 TGTAAATT-GAAGTGTTTAAGTGC
* *
79415922 TGCAAATTGAAGTG-TTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
79415944 TGTAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * * *
79415967 TATAAATTGAAGTGCTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
79415990 TGTAAATTGAAGTGTTTTAAGTAC
1 TGTAAATTGAAGTG-TTTAAGTGC
** *
79416014 TACAAATTGAAGGGTTT-AGTTG-
1 TGTAAATTGAAGTGTTTAAG-TGC
* * *
79416036 TTTGGAATTG-AGATGTTTTA-TCGC
1 TGT-AAATTGAAG-TGTTTAAGT-GC
* * * *
79416060 TGT-AATTGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* *
79416082 TGTTAATTG-AGATGTTAAAGTGC
1 TGTAAATTGAAG-TGTTTAAGTGC
** * * *
79416105 TACAAATTAAAGTGTTTAAATCC
1 TGTAAATTGAAGTGTTTAAGTGC
*
79416128 TGTAAATTGAAGTGTTAAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
** *
79416151 TACAAATTGAAGTGTTTGAA-TGT
1 TGTAAATTGAAGTGTTT-AAGTGC
* *
79416174 TGTAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
79416197 TGTAAATTGAAGTGTTTAAGTAC
1 TGTAAATTGAAGTGTTTAAGTGC
** *
79416220 TACAAATTGAAGTGTTT-AGTTGA
1 TGTAAATTGAAGTGTTTAAG-TGC
* *
79416243 TGGAAATTG-AGATGTTTTA-TCGC
1 TGTAAATTGAAG-TGTTTAAGT-GC
* * * *
79416266 TGT-AATTGAGGAGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* *
79416288 TGTTAATTG-AGATGTTAAAGTGC
1 TGTAAATTGAAG-TGTTTAAGTGC
* * *
79416311 TGCAAATTGAAGTGTTAAAGTGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
79416334 TGCAAATTGAAGTG-TTAATGTGC
1 TGTAAATTGAAGTGTTTAA-GTGC
* * * *
79416357 TGCAAATTGGAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
79416380 TGTAAATTAAAGTTTTTAAGTAC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
79416403 TGCAAATTGAATTGTTT-AGTTGC
1 TGTAAATTGAAGTGTTTAAG-TGC
79416426 TG-AAATT
1 TGTAAATT
79416433 TAGTTTATGT
Statistics
Matches: 521, Mismatches: 112, Indels: 77
0.73 0.16 0.11
Matches are distributed among these distances:
22 97 0.19
23 388 0.74
24 36 0.07
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (23 bp):
TGTAAATTGAAGTGTTTAAGTGC
Found at i:79415817 original size:22 final size:22
Alignment explanation
Indices: 79415789--79415848 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
79415779 AGTTGCTGGA
**
79415789 AATTGAGATGTTTTATCGTTG-T
1 AATTGAGATGTTAAAT-GTTGTT
*
79415811 AATTGAGGTGTATAAATGTTGTT
1 AATTGAGATGT-TAAATGTTGTT
79415834 AATTGAGATGTTAAA
1 AATTGAGATGTTAAA
79415849 GTACAGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (22 bp):
AATTGAGATGTTAAATGTTGTT
Found at i:79416253 original size:206 final size:207
Alignment explanation
Indices: 79415857--79416398 Score: 808
Period size: 206 Copynumber: 2.6 Consensus size: 207
79415847 AAGTACAGCA
* * * *
79415857 AATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGTTAAAGTGCTGCAAATTGGAA-TGTTAAAAT
1 AATTGAGGTGTTTAAATGTTGTTAATTGAGA-TGTTAAAGTGCTGCAAATT-GAAGTGTTTAAAT
* * *
79415920 GCTGCAAATTGAAGTGTTAAA-TGCTGTAAATTGAAGTGTTTAAATGTTATAAATTGAAGTGCTT
64 GCTGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTT
*
79415984 AAATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGTTTGGAATTGAGA
129 AAATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGTATGGAATTGAGA
79416049 TGTTTTATCGCTGT
194 TGTTTTATCGCTGT
* * * *
79416063 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTACAAATTAAAGTGTTTAAATCC
1 AATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGC
* * *
79416128 TGTAAATTGAAGTGTTAAAGTGCTACAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAA
66 TGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAA
*
79416193 ATGTTGTAAATTGAAGTG-TTTAAGTACTACAAATTGAAGTGTTTAGTTG-ATGGAAATTGAGAT
131 ATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGTATGG-AATTGAGAT
79416256 GTTTTATCGCTGT
195 GTTTTATCGCTGT
*
79416269 AATTGAGGAGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG-TTAAAGTG
1 AATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAA-TG
* * * * *
79416333 TTGCAAATTGAAGTGTTAATGTGCTGCAAATTGGAGTGTTTAAATGTTGTAAATTAAAGTTTTTA
65 CTGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTA
79416398 A
130 A
79416399 GTACTGCAAA
Statistics
Matches: 302, Mismatches: 29, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
205 10 0.03
206 233 0.77
207 59 0.20
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (207 bp):
AATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGC
TGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAA
ATGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGGGTTTAGTTGTATGGAATTGAGATG
TTTTATCGCTGT
Found at i:79417189 original size:43 final size:43
Alignment explanation
Indices: 79417104--79417253 Score: 212
Period size: 43 Copynumber: 3.5 Consensus size: 43
79417094 AGGTTCTTTA
* * *
79417104 GTCATGTTTTTTAGCGGCGTTT-TTGGGAAAGTGCCGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
*
79417146 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCTGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
* * *
79417189 GTCATGTTCTTTAGCGACGTTTGTGGGGAAAGCGCCACTAAAA
1 GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
* *
79417232 GTCATGTTCTATAGAGGCGTTT
1 GTCATGTTCTTTAGCGGCGTTT
79417254 TTTCACATAA
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 21 0.22
43 75 0.78
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.33
Consensus pattern (43 bp):
GTCATGTTCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAG
Found at i:79422610 original size:17 final size:18
Alignment explanation
Indices: 79422590--79422623 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
79422580 AAGTGAATTG
79422590 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
79422607 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
79422624 ATGAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:79423372 original size:20 final size:20
Alignment explanation
Indices: 79423349--79423388 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
79423339 TGAAATTGTA
79423349 AAAGATAAAT-ACAAATAAAT
1 AAAGATAAATGA-AAATAAAT
79423369 AAAGATAAATGAAAATAAAT
1 AAAGATAAATGAAAATAAAT
79423389 CCTAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATGAAAATAAAT
Found at i:79428628 original size:53 final size:51
Alignment explanation
Indices: 79428482--79428637 Score: 179
Period size: 52 Copynumber: 3.0 Consensus size: 51
79428472 GACGGAAAAG
* * * * *
79428482 ATGTGATATATGCTTCTGTATAAGACCATAGCTGGGCTATGGAATTGGTACA
1 ATGTGATAT-TGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
*
79428534 ATGTGAT-TCGAGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATATTGA-TT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
79428586 ATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCTGTAT
1 ATGTGAT-AT-TGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAT
79428638 GTTATGTGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
50 1 0.01
51 3 0.03
52 47 0.53
53 33 0.37
54 3 0.03
55 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (51 bp):
ATGTGATATTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:79432655 original size:24 final size:23
Alignment explanation
Indices: 79432628--79432765 Score: 82
Period size: 26 Copynumber: 5.6 Consensus size: 23
79432618 TTATCATTTC
79432628 AGCTCTTTCGAGCT-ATAATCAGTA
1 AGCTCTTT-GAGCTGATAA-CAGTA
*
79432652 AGCTCCTCTTGAGCTGATGGACAGTA
1 AGCT-CT-TTGAGCTGAT-AACAGTA
*
79432678 AGCTCTATTAAGCTGA-AACAGTA
1 AGCTCT-TTGAGCTGATAACAGTA
** * *
79432701 AGCTCTGACGAGCTAAAAACAGTA
1 AGCTCT-TTGAGCTGATAACAGTA
* *
79432725 AGCTCTTAGGAGCTGATATATCGGTA
1 AGCTCTT-TGAGCTGATA-A-CAGTA
*
79432751 AGCTCATATGAGCTG
1 AGCTC-TTTGAGCTG
79432766 TGGTGAGTCC
Statistics
Matches: 89, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
23 17 0.19
24 24 0.27
25 18 0.20
26 28 0.31
27 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (23 bp):
AGCTCTTTGAGCTGATAACAGTA
Found at i:79439813 original size:23 final size:23
Alignment explanation
Indices: 79439787--79439834 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
79439777 AACATATATA
79439787 ATAAATAAATTTAAAATGA-TTAT
1 ATAAATAAATTTAAAAT-ATTTAT
*
79439810 AT-AATTAATTTAAAATATTTAT
1 ATAAATAAATTTAAAATATTTAT
79439832 ATA
1 ATA
79439835 TATTATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 1 0.05
22 19 0.86
23 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
ATAAATAAATTTAAAATATTTAT
Found at i:79439822 original size:22 final size:23
Alignment explanation
Indices: 79439794--79439839 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
79439784 ATAATAAATA
79439794 AATTTAAAATGA-TTATATA-ATT
1 AATTTAAAAT-ATTTATATATATT
79439816 AATTTAAAATATTTATATATATT
1 AATTTAAAATATTTATATATATT
79439839 A
1 A
79439840 TGATACATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 1 0.05
22 17 0.77
23 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
AATTTAAAATATTTATATATATT
Found at i:79440318 original size:19 final size:19
Alignment explanation
Indices: 79440296--79440357 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
79440286 TATAATTACC
79440296 ATTTACTACTAAAATTAAT
1 ATTTACTACTAAAATTAAT
* * **
79440315 ATTT-CTCTCTCATAATTACC
1 ATTTACT-ACT-AAAATTAAT
*
79440335 ATTTACTATTAAAATTAAT
1 ATTTACTACTAAAATTAAT
79440354 ATTT
1 ATTT
79440358 CTCTCTCACA
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
18 2 0.06
19 16 0.52
20 11 0.35
21 2 0.06
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTACTACTAAAATTAAT
Found at i:79440330 original size:39 final size:39
Alignment explanation
Indices: 79440287--79440365 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
79440277 TTAGTAGGAT
79440287 ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
1 ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
*
79440326 ATAATTACCATTTACTATTAAAATTAATATTTCTCTCTC
1 ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
79440365 A
1 A
79440366 CAAAATTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (39 bp):
ATAATTACCATTTACTACTAAAATTAATATTTCTCTCTC
Found at i:79443158 original size:47 final size:44
Alignment explanation
Indices: 79443085--79443441 Score: 245
Period size: 47 Copynumber: 7.7 Consensus size: 44
79443075 TGATTTGTGC
* * *
79443085 GCCAGTGTAAGACATGTCTGGAACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GA-GAGA
* *
79443131 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GTCATAGAGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAGAGA-GA
* *
79443177 GTGCCAGAGTAA-ACATGTCTGGGACATGCATCGGCCTCTACAGAGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGAGAGA
* * * * * *
79443225 GCTAGTGTAAGATATGTCTGGGACACGCATCGGCTA-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGAG-AGA
* * * *
79443269 GCTAGAGTAAGACATGTCTGGGACATGCATCGGCCTTAATAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACAGAGAGA
* * * * *
79443316 GCCAGTGTAAGACGTGTCTGGGACATGCATTGGCTA-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGAG-AGA
* * * *
79443360 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC---CACAGA-GAGA
* *
79443408 GCCAGTGTAAGTCCATGTCTGAGACATGGCATCG
1 GCCAGTGTAAG-ACATGTCTGGGACAT-GCATCG
79443442 ACAATTTATC
Statistics
Matches: 244, Mismatches: 44, Indels: 42
0.74 0.13 0.13
Matches are distributed among these distances:
43 8 0.03
44 63 0.26
45 7 0.03
46 39 0.16
47 70 0.29
48 32 0.13
49 20 0.08
50 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGAGAGA
Found at i:79443288 original size:44 final size:45
Alignment explanation
Indices: 79443134--79443390 Score: 247
Period size: 44 Copynumber: 5.6 Consensus size: 45
79443124 TATGAGAGCC
* * *
79443134 AGTGTAAGACCATGTCTGGGACATGGCATCGTC-ATAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATAGAG-T-TGTGCT
* * * *
79443182 AGAGTAA-ACATGTCTGGGACATGCATCGGCCTCTACAGAGAT-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CTATAGAGTTGTGCT
* *
79443228 AGTGTAAGATATGTCTGGGACACGCATCGGCTA-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATAGAGTTGTGCT
* * * *
79443272 AGAGTAAGACATGTCTGGGACATGCATCGGCCTTAATAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-T-ATAGAGTTGTGCT
* *
79443319 AGTGTAAGACGTGTCTGGGACATGCATTGGCTA-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATAGAGTTGTGCT
79443363 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
79443391 AGCATGCATA
Statistics
Matches: 172, Mismatches: 26, Indels: 26
0.77 0.12 0.12
Matches are distributed among these distances:
43 10 0.06
44 62 0.36
45 8 0.05
46 24 0.14
47 51 0.30
48 12 0.07
49 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATAGAGTTGTGCT
Found at i:79443298 original size:91 final size:91
Alignment explanation
Indices: 79443091--79443390 Score: 351
Period size: 91 Copynumber: 3.3 Consensus size: 91
79443081 GTGCGCCAGT
* * * *
79443091 GTAAGACATGTCTGGAACATGCTTCGG-C-C-ACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 GTAAGACATGTCTGGGACATGCATCGGCCTCTACA-GA-GATAGCCAGTGTAAGA-CATGTCTGG
* * * *
79443153 GACATGGCATCGTC-ATAGAGATGAGTGCCAGA
63 GACA-CGCATCGGCTA-AGAG-T-TGTGCTAGA
* *
79443185 GTAA-ACATGTCTGGGACATGCATCGGCCTCTACAGAGATAGCTAGTGTAAGATATGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCGGCCTCTACAGAGATAGCCAGTGTAAGACATGTCTGGGAC
79443249 ACGCATCGGCTAAGAGTTGTGCTAGA
66 ACGCATCGGCTAAGAGTTGTGCTAGA
* *
79443275 GTAAGACATGTCTGGGACATGCATCGGCCT-TAATAGAGATAGCCAGTGTAAGACGTGTCTGGGA
1 GTAAGACATGTCTGGGACATGCATCGGCCTCT-ACAGAGATAGCCAGTGTAAGACATGTCTGGGA
* * *
79443339 CATGCATTGGCTAAGAGTTGTGCTAGT
65 CACGCATCGGCTAAGAGTTGTGCTAGA
79443366 GTAAGACATGTCTGGGACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
79443391 AGCATGCATA
Statistics
Matches: 183, Mismatches: 17, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
90 12 0.07
91 103 0.56
92 11 0.06
93 33 0.18
94 19 0.10
95 2 0.01
96 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (91 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCTACAGAGATAGCCAGTGTAAGACATGTCTGGGAC
ACGCATCGGCTAAGAGTTGTGCTAGA
Found at i:79444665 original size:19 final size:19
Alignment explanation
Indices: 79444641--79444678 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79444631 GAGTTTAAGT
79444641 CAGGTAGCACCATGAACCC
1 CAGGTAGCACCATGAACCC
79444660 CAGGTAGCACCATGAACCC
1 CAGGTAGCACCATGAACCC
79444679 TATCCTAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.37, G:0.21, T:0.11
Consensus pattern (19 bp):
CAGGTAGCACCATGAACCC
Found at i:79450908 original size:47 final size:47
Alignment explanation
Indices: 79450757--79451023 Score: 192
Period size: 47 Copynumber: 5.7 Consensus size: 47
79450747 TAATTTGTGC
* * *
79450757 GCCAGTGTAAGACATGTCTGGGACATGCTTCGG-C-C-ACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACA-GA-GATA
* * * * *
79450803 GCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCATAGAGATA-AGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGACAGAGA-TA
* * *
79450851 GGCAGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
* * * *
79450898 GCCAGTGTAAGACGTGTCTGGGACACGCATCGG-CT--A-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGAT-A
* * * * * *
79450942 GCTAGAGTAATACATGTCTAGGACATGCATTGACCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
* * * *
79450989 GCCAGTGTAAGACGTGTCTTGGACACGCATTGGCC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
79451024 AAGAGTTGTG
Statistics
Matches: 170, Mismatches: 38, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
43 5 0.03
44 26 0.15
45 2 0.01
46 27 0.16
47 85 0.50
48 21 0.12
50 2 0.01
51 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
Found at i:79450979 original size:91 final size:90
Alignment explanation
Indices: 79450802--79451063 Score: 319
Period size: 91 Copynumber: 2.8 Consensus size: 90
79450792 ACATTATGAG
* * * *
79450802 AGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCATAGAGATAAGTGGC-AGAGTAAGACAT
1 AGCCAGTGTAAGA-CGTGTCTGGGACA-CGCATCGGCA-AGAG-T-TGT-GCTAGAGTAAGACAT
* * *
79450866 GTTTGGGACATGCATCGGCCTCGACAGAGAT
60 GTCTAGGACATGCATCGACCTCGACAGAGAT
*
79450897 AGCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCTAGAGTAATACATGTCTA
1 AGCCAGTGTAAGACGTGTCTGGGACACGCATCGGC-AAGAGTTGTGCTAGAGTAAGACATGTCTA
*
79450962 GGACATGCATTGACCTCGACAGAGAT
65 GGACATGCATCGACCTCGACAGAGAT
* * * *
79450988 AGCCAGTGTAAGACGTGTCTTGGACACGCATTGGCCAAGAGTTGTGCTAGTGAAAGACATGTCTA
1 AGCCAGTGTAAGACGTGTCTGGGACACGCATCGG-CAAGAGTTGTGCTAGAGTAAGACATGTCTA
*
79451053 GGATATGCATC
65 GGACATGCATC
79451064 AGCACGCATA
Statistics
Matches: 148, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
90 2 0.01
91 107 0.72
92 2 0.01
93 12 0.08
94 13 0.09
95 12 0.08
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (90 bp):
AGCCAGTGTAAGACGTGTCTGGGACACGCATCGGCAAGAGTTGTGCTAGAGTAAGACATGTCTAG
GACATGCATCGACCTCGACAGAGAT
Found at i:79453674 original size:43 final size:43
Alignment explanation
Indices: 79453613--79453701 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
79453603 ATTAAAATGG
*
79453613 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACGATC
1 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
79453656 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
1 TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
79453699 TAA
1 TAA
79453702 GTCCGTATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.30
Consensus pattern (43 bp):
TAAAACGAGTCAACTATTCCCAAACCTTGTTCTTTCCACAATC
Found at i:79456014 original size:29 final size:29
Alignment explanation
Indices: 79455962--79456020 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
79455952 CAAGTAGACT
* *
79455962 TTTATCACTTAAGGTCTCTTTTCTCTCTA
1 TTTATCACTTAAAGTCTCTGTTCTCTCTA
*
79455991 TTTATCACTTAAAGTTTCTGTTCTCTCTA
1 TTTATCACTTAAAGTCTCTGTTCTCTCTA
79456020 T
1 T
79456021 CTTTTTACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.07, T:0.53
Consensus pattern (29 bp):
TTTATCACTTAAAGTCTCTGTTCTCTCTA
Found at i:79459699 original size:63 final size:63
Alignment explanation
Indices: 79459620--79459746 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
79459610 CTAATATGCA
79459620 AGAAGGGGATAGAATAATTATTTCCAGGATTCTTAGAGTGCAAAGTTCTAATAACCCGAAACG
1 AGAAGGGGATAGAATAATTATTTCCAGGATTCTTAGAGTGCAAAGTTCTAATAACCCGAAACG
79459683 AGAAGGGGATAGAATAATTATTTCCAGGATTCTTAGAGTGCAAAGTTCTAATAACCCGAAACG
1 AGAAGGGGATAGAATAATTATTTCCAGGATTCTTAGAGTGCAAAGTTCTAATAACCCGAAACG
79459746 A
1 A
79459747 TATCTTGGTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (63 bp):
AGAAGGGGATAGAATAATTATTTCCAGGATTCTTAGAGTGCAAAGTTCTAATAACCCGAAACG
Found at i:79462545 original size:14 final size:13
Alignment explanation
Indices: 79462526--79462556 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
79462516 TAAGATTAGA
79462526 TATTTATTTTATAT
1 TATTTATTTTAT-T
79462540 TATTTATTTTATT
1 TATTTATTTTATT
79462553 TATT
1 TATT
79462557 AGATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTATTTTATT
Found at i:79464375 original size:42 final size:43
Alignment explanation
Indices: 79464317--79464419 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
79464307 ATCGATTTGA
*
79464317 GATTTACGTGTAAGACCATGTCTAGGACA-TCGCCATC-ATATTT
1 GATTT-CGTGTAAGACCATGTCTAGGACAGT-GCAATCGATATTT
* * * *
79464360 GATTTCGTGTAAGACCCTGTTTGGGACAGTGGAATCGATATTT
1 GATTTCGTGTAAGACCATGTCTAGGACAGTGCAATCGATATTT
* *
79464403 GATTACATGTAAGACCA
1 GATTTCGTGTAAGACCA
79464420 CGTTTGGAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 24 0.48
43 26 0.52
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTAGGACAGTGCAATCGATATTT
Found at i:79464984 original size:10 final size:11
Alignment explanation
Indices: 79464965--79465008 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
79464955 AGCCATGTGA
79464965 TATGGCTTGAT
1 TATGGCTTGAT
79464976 TATGG-TTGATCT
1 TATGGCTTGA--T
79464988 TATGGCTTGAT
1 TATGGCTTGAT
79464999 TATGG-TTGAT
1 TATGGCTTGAT
79465009 CTTATGTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 9 0.30
11 11 0.37
12 6 0.20
13 4 0.13
ACGTcount: A:0.18, C:0.07, G:0.27, T:0.48
Consensus pattern (11 bp):
TATGGCTTGAT
Found at i:79464992 original size:12 final size:12
Alignment explanation
Indices: 79464975--79465020 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
79464965 TATGGCTTGA
79464975 TTATGGTTGATC
1 TTATGGTTGATC
79464987 TTATGGCTTGA--
1 TTATGG-TTGATC
79464998 TTATGGTTGATC
1 TTATGGTTGATC
79465010 TTATGTGTTGA
1 TTATG-GTTGA
79465021 GGAAACATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 4 0.13
11 6 0.20
12 11 0.37
13 9 0.30
ACGTcount: A:0.17, C:0.07, G:0.26, T:0.50
Consensus pattern (12 bp):
TTATGGTTGATC
Found at i:79465020 original size:23 final size:23
Alignment explanation
Indices: 79464965--79465014 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
79464955 AGCCATGTGA
79464965 TATGGCTTGATTATGGTTGATCT
1 TATGGCTTGATTATGGTTGATCT
79464988 TATGGCTTGATTATGGTTGATCT
1 TATGGCTTGATTATGGTTGATCT
79465011 TATG
1 TATG
79465015 TGTTGAGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.18, C:0.08, G:0.26, T:0.48
Consensus pattern (23 bp):
TATGGCTTGATTATGGTTGATCT
Found at i:79474301 original size:46 final size:46
Alignment explanation
Indices: 79474158--79474365 Score: 203
Period size: 46 Copynumber: 4.5 Consensus size: 46
79474148 TTTGTGTGCT
* *
79474158 AGTGTAAGACAT-TCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * *
79474203 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
* * * *
79474251 AGTGTAAGACATATTTGCGACATGCATCGGCCTCGAGATGTA-TGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * *
79474297 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGA-G-GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
*
79474341 AGTGTAAGACCATATCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
79474366 GCATTAACAC
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 12 0.09
45 26 0.19
46 51 0.37
47 22 0.16
48 25 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:79474317 original size:93 final size:92
Alignment explanation
Indices: 79474155--79474324 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
79474145 TTATTTGTGT
* *
79474155 GCTAGTGTAAGACATTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACATTCTGCGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCT
79474220 GGGACATGGCATCGGCATTGAGATGAGA
66 GGGACAT-GCATCGGCATTGAGATGAGA
* * *
79474248 GCTAGTGTAAGACATATTTGCGACATGCATCGGCCTCGA-GATGTA-TGCCAGTGTAAGA-CATG
1 GCTAGTGTAAGACAT-TCTGCGACATGCATCGGCCAC-ATGATG-AGAGCCAGTGTAAGACCATG
79474310 TCTGGGACATGCATC
63 TCTGGGACATGCATC
79474325 AGCTACGAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
92 5 0.07
93 29 0.42
94 33 0.48
95 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATTCTGCGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGCATCGGCATTGAGATGAGA
Found at i:79476598 original size:63 final size:63
Alignment explanation
Indices: 79476494--79476615 Score: 226
Period size: 63 Copynumber: 1.9 Consensus size: 63
79476484 TTCGGGTACG
* *
79476494 ATCTGATTACTCGCTTGATAAGTTAAGTGAATTATATATTTTTTATATTGTGAGATTGCTACA
1 ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGCTACA
79476557 ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGC
1 ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGC
79476616 ACAGAGTGCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (63 bp):
ATCTGATTACTCGCTTGATAAATTAAGTGAATTATACATTTTTTATATTGTGAGATTGCTACA
Found at i:79478776 original size:40 final size:40
Alignment explanation
Indices: 79478745--79478835 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
79478735 GGACTAAGAT
* *
79478745 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
79478785 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
79478825 CCGAAGGCATT
1 CCGAAGGCATT
79478836 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:79486683 original size:40 final size:40
Alignment explanation
Indices: 79486599--79486782 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
79486589 TTGAATGCTG
* * * *
79486599 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
79486638 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
79486679 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
79486719 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
79486759 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79486783 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:79486739 original size:80 final size:81
Alignment explanation
Indices: 79486599--79486779 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
79486589 TTGAATGCTG
* * *
79486599 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCAAAGGCATT
* *
79486663 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
79486679 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCAAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCAAAGGC
79486740 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
79486759 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
79486780 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCAAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:79489124 original size:41 final size:44
Alignment explanation
Indices: 79489056--79489163 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
79489046 ATGGATTTGA
*
79489056 GATTTACGTGTAA-ACCATGTCTGGGACATTGCCATC-ATA-TTT
1 GATTT-CGTGTAAGACCATGTCTGGGACAGTGCCATCGATATTTT
* *
79489098 GATTTCGTGTAAGACCCTGTCT-GGACAGTGGCATCGATATTTTT
1 GATTTCGTGTAAGACCATGTCTGGGACAGTGCCATCGATA-TTTT
* * *
79489142 GATTACATGTAAGACCACGTCT
1 GATTTCGTGTAAGACCATGTCT
79489164 AGGATGTTGG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 18 0.33
42 16 0.29
44 21 0.38
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (44 bp):
GATTTCGTGTAAGACCATGTCTGGGACAGTGCCATCGATATTTT
Found at i:79495114 original size:30 final size:29
Alignment explanation
Indices: 79495078--79495152 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 29
79495068 ATTATTAGGG
79495078 TTTATCAGACACTATTTAC-TGTTGATTATA
1 TTTATCAGACACTATTTACTTG-TG-TTATA
*
79495108 TTTATCAGGTACA-TTTTTACTTGTGTTATA
1 TTTATCA-G-ACACTATTTACTTGTGTTATA
*
79495138 TTTATCAGGCACTAT
1 TTTATCAGACACTAT
79495153 GTGCCGATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
28 2 0.05
29 3 0.08
30 19 0.50
31 9 0.24
32 5 0.13
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (29 bp):
TTTATCAGACACTATTTACTTGTGTTATA
Found at i:79498363 original size:30 final size:30
Alignment explanation
Indices: 79498296--79498487 Score: 160
Period size: 30 Copynumber: 6.4 Consensus size: 30
79498286 TCATTGGCTG
*
79498296 ATGAAAAGGGATAGCTTCGGCTATCAAAATA
1 ATGAAAAGGGATAGCTTCGGCTATC-AAATT
79498327 ATGAAAAGGGATAGTCTT-GGCTATCAAATT
1 ATGAAAAGGGATAG-CTTCGGCTATCAAATT
* * ** * *
79498357 ATGAAAAGGGAT-GGTGACAACCATCCACA--
1 ATGAAAAGGGATAGCT-TCGGCTAT-CAAATT
* * * * * * **
79498386 ATGAAAAGGTAT-GGTGACGACCATCGAACA
1 ATGAAAAGGGATAGCT-TCGGCTATCAAATT
79498416 ATGAAAAGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATT
*
79498446 TTGAAAAGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATT
79498476 ATGAAAAGGGAT
1 ATGAAAAGGGAT
79498488 GGTGATGACC
Statistics
Matches: 133, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
28 3 0.02
29 23 0.17
30 78 0.59
31 26 0.20
32 3 0.02
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAATT
Found at i:79498399 original size:29 final size:30
Alignment explanation
Indices: 79498357--79498427 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
79498347 CTATCAAATT
*
79498357 ATGAAAAGGGATGGTGACAACCATC-CACA
1 ATGAAAAGGGATGGTGACAACCATCGAACA
* *
79498386 ATGAAAAGGTATGGTGACGACCATCGAACA
1 ATGAAAAGGGATGGTGACAACCATCGAACA
79498416 ATGAAAAGGGAT
1 ATGAAAAGGGAT
79498428 AGCTTCGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 23 0.62
30 14 0.38
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.15
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACAACCATCGAACA
Found at i:79498502 original size:30 final size:30
Alignment explanation
Indices: 79498322--79498546 Score: 120
Period size: 30 Copynumber: 7.6 Consensus size: 30
79498312 TCGGCTATCA
* ** * *
79498322 AAATAATGAAAAGGGATAGTCTTGGCTATC
1 AAATAATGAAAAGGGATGGTGATGACCATC
* **
79498352 AAATTATGAAAAGGGATGGTGACAACCATC
1 AAATAATGAAAAGGGATGGTGATGACCATC
* * * *
79498382 -CACAATGAAAAGGTATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGATGACCATC
* * * * *
79498411 GAACAATGAAAAGGGATAGCT--TCGGCTATC
1 AAATAATGAAAAGGGAT-GGTGAT-GACCATC
** * * *
79498441 AAATTTTGAAAAGGGATAGCT--TCGGCTATC
1 AAATAATGAAAAGGGAT-GGTGAT-GACCATC
*
79498471 AAATTATGAAAAGGGATGGTGATGACCATC
1 AAATAATGAAAAGGGATGGTGATGACCATC
* * **
79498501 -AACAATGAAATGTAATGGTGATGACCATC
1 AAATAATGAAAAGGGATGGTGATGACCATC
*
79498530 AAATAATGAGAAGGGAT
1 AAATAATGAAAAGGGAT
79498547 AGCTTTGACT
Statistics
Matches: 152, Mismatches: 37, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
29 50 0.33
30 99 0.65
31 3 0.02
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (30 bp):
AAATAATGAAAAGGGATGGTGATGACCATC
Found at i:79498505 original size:89 final size:89
Alignment explanation
Indices: 79498326--79498510 Score: 225
Period size: 89 Copynumber: 2.1 Consensus size: 89
79498316 CTATCAAAAT
* *
79498326 AATGAAAAGGGATAGTCTTGGCTATCAAATTATGAAAAGGGATGGTGACAACCATCCACAATGAA
1 AATGAAAAGGGATAGTCTTGGCTATCAAATTATGAAAAGGGATGCTGACAACCATCCAAAATGAA
*
79498391 AAGGTATGGTGACGACCATCGAAC
66 AAGGGATGGTGACGACCATCGAAC
* * ** *
79498415 AATGAAAAGGGATAG-CTTCGGCTATCAAATTTTGAAAAGGGATAGCT-TCGGCTAT-CAAATTA
1 AATGAAAAGGGATAGTCTT-GGCTATCAAATTATGAAAAGGGAT-GCTGACAACCATCCAAA--A
*
79498477 TGAAAAGGGATGGTGATGACCATC-AAC
62 TGAAAAGGGATGGTGACGACCATCGAAC
79498504 AATGAAA
1 AATGAAA
79498511 TGTAATGGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
88 6 0.07
89 52 0.63
90 25 0.30
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (89 bp):
AATGAAAAGGGATAGTCTTGGCTATCAAATTATGAAAAGGGATGCTGACAACCATCCAAAATGAA
AAGGGATGGTGACGACCATCGAAC
Found at i:79498508 original size:119 final size:118
Alignment explanation
Indices: 79498296--79498616 Score: 385
Period size: 119 Copynumber: 2.7 Consensus size: 118
79498286 TCATTGGCTG
*
79498296 ATGAAAAGGGATAGCTTCGGCTATCAAAATAATGAAAAGGGATAGTCTTGGCTATCAAATTATGA
1 ATGAAAAGGGATAGCTTCGGCTATC-AAATTATGAAAAGGGATAG-CTTGGCTATCAAATTATGA
* *
79498361 AAAGGGATGGTGACAACCATCCACAATGAAAAGGT-ATGGTGACGACCATCGAACA
64 AAAGGGATGGTGACAACCATCAACAATG-AAAGGTAATGGTGACGACCATCAAACA
*
79498416 ATGAAAAGGGATAGCTTCGGCTATCAAATTTTGAAAAGGGATAGCTTCGGCTATCAAATTATGAA
1 ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATAGCTT-GGCTATCAAATTATGAA
** * * *
79498481 AAGGGATGGTGATGACCATCAACAATGAAATGTAATGGTGATGACCATCAAATA
65 AAGGGATGGTGACAACCATCAACAATGAAAGGTAATGGTGACGACCATCAAACA
* * * * ** * * ****
79498535 ATGAGAAGGGATAGCTTTGACTATCGAGCTGTGAAAAGGGATAACTTTGGCTATCCGGCTATGAA
1 ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATAGC-TTGGCTATCAAATTATGAA
*
79498600 AAGGGTTGG-GACAACCA
65 AAGGGATGGTGACAACCA
79498617 ACGTGATTTT
Statistics
Matches: 174, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
118 14 0.08
119 133 0.76
120 27 0.16
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (118 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATAGCTTGGCTATCAAATTATGAAA
AGGGATGGTGACAACCATCAACAATGAAAGGTAATGGTGACGACCATCAAACA
Found at i:79498576 original size:30 final size:30
Alignment explanation
Indices: 79498535--79498604 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
79498525 CCATCAAATA
* *
79498535 ATGAGAAGGGATAGCTTTGACTAT-CGAGCT
1 ATGAAAAGGGATAACTTTGACTATCCG-GCT
* *
79498565 GTGAAAAGGGATAACTTTGGCTATCCGGCT
1 ATGAAAAGGGATAACTTTGACTATCCGGCT
79498595 ATGAAAAGGG
1 ATGAAAAGGG
79498605 TTGGGACAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAACTTTGACTATCCGGCT
Found at i:79510199 original size:17 final size:17
Alignment explanation
Indices: 79510173--79510335 Score: 98
Period size: 17 Copynumber: 9.6 Consensus size: 17
79510163 ACCTATGACA
*
79510173 ATATACGAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* * *
79510190 ATATGTGAGCCGTGTGT
1 ATATGCGAGCTGTGTTT
* * * *
79510207 ATAAGCAAGTTTTGTTT
1 ATATGCGAGCTGTGTTT
* * * *
79510224 AGATGTGAGCTATATTT
1 ATATGCGAGCTGTGTTT
*
79510241 ATATGCG-GGTG-GTTTT
1 ATATGCGAGCTGTG-TTT
* * * *
79510257 ATTACGCGAGGTATATTT
1 A-TATGCGAGCTGTGTTT
79510275 ATATGCGAG-TGGTGTTT
1 ATATGCGAGCT-GTGTTT
*
79510292 ATATGCAAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
79510309 ATATGCGAGATTTGTTT
1 ATATGCGAGCTGTGTTT
79510326 ATATGCGAGC
1 ATATGCGAGC
79510336 ACTATATATA
Statistics
Matches: 106, Mismatches: 34, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
16 7 0.07
17 91 0.86
18 8 0.08
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.40
Consensus pattern (17 bp):
ATATGCGAGCTGTGTTT
Found at i:79510423 original size:17 final size:17
Alignment explanation
Indices: 79510357--79510425 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 17
79510347 GCGAGTTTTT
*
79510357 TTTATATACTAGTTGTG
1 TTTATATACAAGTTGTG
*
79510374 TTTATA-A-AAGATCTATG
1 TTTATATACAAG-T-TGTG
**
79510391 TTTATATGTGAA-TTGTG
1 TTTATAT-ACAAGTTGTG
79510408 TTTATATACAAGTTGTG
1 TTTATATACAAGTTGTG
79510425 T
1 T
79510426 CAATGTGTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
15 2 0.05
16 4 0.10
17 31 0.77
18 1 0.03
20 2 0.05
ACGTcount: A:0.29, C:0.04, G:0.17, T:0.49
Consensus pattern (17 bp):
TTTATATACAAGTTGTG
Found at i:79512311 original size:43 final size:43
Alignment explanation
Indices: 79512147--79512311 Score: 129
Period size: 43 Copynumber: 3.8 Consensus size: 43
79512137 ACATTAGATT
* * * *
79512147 ATCGAGATGTGATTACATGTAAGACCATGTCTGGTACATTGGT
1 ATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTGGC
* *
79512190 ATTGCAT-TGTGA-ATACGTGTAAGACCATGTCTGGGACATTGGC
1 ATCG-ATATGTGATA-ACATGTAAGACCATGTCTGGGACATTGGC
* * ** * * * * * *
79512233 ATCGTTAT-TCAATTTCGTGTAAGATCTTTTTTGGGACAATGGC
1 ATCGATATGT-GATAACATGTAAGACCATGTCTGGGACATTGGC
*
79512276 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGTGATAACATGTAAGACCATGTCTGGGA
79512312 TATGCCTTTG
Statistics
Matches: 91, Mismatches: 25, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
42 2 0.02
43 87 0.96
44 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
ATCGATATGTGATAACATGTAAGACCATGTCTGGGACATTGGC
Found at i:79515694 original size:15 final size:15
Alignment explanation
Indices: 79515674--79515703 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79515664 AAGGTTATTT
79515674 TGCTTTGTATGGTCA
1 TGCTTTGTATGGTCA
79515689 TGCTTTGTATGGTCA
1 TGCTTTGTATGGTCA
79515704 CTGGTGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.27, T:0.47
Consensus pattern (15 bp):
TGCTTTGTATGGTCA
Found at i:79516658 original size:23 final size:23
Alignment explanation
Indices: 79516609--79516658 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
79516599 TTTCACCCTT
* *
79516609 AAAACCCTAAACCTAATTCCTAA
1 AAAAACCTAAACCTAATCCCTAA
*
79516632 AAAAACCTAACCCTAA-CCCTAA
1 AAAAACCTAAACCTAATCCCTAA
*
79516654 CAAAA
1 AAAAA
79516659 TTTTAAAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (23 bp):
AAAAACCTAAACCTAATCCCTAA
Found at i:79517162 original size:27 final size:27
Alignment explanation
Indices: 79517114--79517169 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
79517104 GCCAATATCG
*
79517114 TAGGTGGCACCAGTAGTGCCCATGTCA
1 TAGGTGGCACCAGTAGTACCCATGTCA
* *
79517141 TAGGTGGCACTAGTGGTACCCATGTCA
1 TAGGTGGCACCAGTAGTACCCATGTCA
79517168 TA
1 TA
79517170 AGCTGTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (27 bp):
TAGGTGGCACCAGTAGTACCCATGTCA
Found at i:79521746 original size:16 final size:16
Alignment explanation
Indices: 79521725--79521755 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
79521715 ATACTGTGCT
79521725 TATGTTTCAATTATAG
1 TATGTTTCAATTATAG
79521741 TATGTTTCAATTATA
1 TATGTTTCAATTATA
79521756 AAGGGTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (16 bp):
TATGTTTCAATTATAG
Found at i:79531182 original size:26 final size:26
Alignment explanation
Indices: 79531146--79531220 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
79531136 TTTCTCACCC
79531146 CAATTTTACCCCTAGTAAAATTTTGA
1 CAATTTTACCCCTAGTAAAATTTTGA
* *
79531172 CAATCTTACCCTTTA-TAAAATTTTGA
1 CAATTTTACCC-CTAGTAAAATTTTGA
**
79531198 TGATTTTACCCCTAGTAAAATTT
1 CAATTTTACCCCTAGTAAAATTT
79531221 CGAGAAATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 2 0.05
26 37 0.90
27 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (26 bp):
CAATTTTACCCCTAGTAAAATTTTGA
Found at i:79533873 original size:121 final size:121
Alignment explanation
Indices: 79533671--79533905 Score: 398
Period size: 121 Copynumber: 1.9 Consensus size: 121
79533661 TTACGATCCA
* * *
79533671 ACCACGTAATACCGCTTAATATTAGTTAAACATTAGACGACCAATGAGCCACATTTGCTTCCATT
1 ACCACGTAATACCGCTTAATATCAGTTAAACATTAGACAACCAATAAGCCACATTTGCTTCCATT
* *
79533736 TTTCTGTGTGTGCAAAAATCATTTGAGGATAATAATACAAAGTATATTACGATATG
66 TTGCTGTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTATATTACGATATG
* *
79533792 ACCATGTAATACCGCTTAGTATCAGTTAAACATTAGACAACCAATAAGCCACATTTGCTTCCATT
1 ACCACGTAATACCGCTTAATATCAGTTAAACATTAGACAACCAATAAGCCACATTTGCTTCCATT
*
79533857 TTGCTTTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTATATTA
66 TTGCTGTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTATATTA
79533906 GTTGTAATCA
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 106 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (121 bp):
ACCACGTAATACCGCTTAATATCAGTTAAACATTAGACAACCAATAAGCCACATTTGCTTCCATT
TTGCTGTGTGTGCAAAAATCATTTGAGGACAATAATACAAAGTATATTACGATATG
Found at i:79539584 original size:21 final size:21
Alignment explanation
Indices: 79539554--79539602 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
79539544 AACAACAGTG
*
79539554 GCGGTAAGATT-AGTTACTGTA
1 GCGGTAAGATTGA-ATACTGTA
*
79539575 GCGGTGAGATTGAATACTGTA
1 GCGGTAAGATTGAATACTGTA
79539596 GCGGTAA
1 GCGGTAA
79539603 AATTAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (21 bp):
GCGGTAAGATTGAATACTGTA
Found at i:79541536 original size:22 final size:19
Alignment explanation
Indices: 79541524--79541568 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
79541514 AACGGCAGCT
79541524 AAGAAGAAGAGAAAGGAAG
1 AAGAAGAAGAGAAAGGAAG
*
79541543 AAGAAGAAGAGAAAAG-AG
1 AAGAAGAAGAGAAAGGAAG
79541561 AAG-AGAAG
1 AAGAAGAAG
79541569 GGGGAAGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 5 0.20
18 5 0.20
19 15 0.60
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (19 bp):
AAGAAGAAGAGAAAGGAAG
Found at i:79547246 original size:23 final size:22
Alignment explanation
Indices: 79547220--79547263 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
79547210 TTCTTTTATT
*
79547220 TTAATTACAAAAATTCATATTTG
1 TTAAATACAAAAATT-ATATTTG
* *
79547243 TTAAATATAAATATTATATTT
1 TTAAATACAAAAATTATATTT
79547264 TGATAGCTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
TTAAATACAAAAATTATATTTG
Found at i:79548945 original size:31 final size:31
Alignment explanation
Indices: 79548879--79548951 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
79548869 TTATTTGAAC
* * *
79548879 AATTATAGTCTCTATACTTTTCAACTTGGTC
1 AATTTTAGTCCCTATACTTTTCAACTTGGTA
* *
79548910 AATTTTAGTCCCTATACTTTTCAAATT-TTGA
1 AATTTTAGTCCCTATACTTTTCAACTTGGT-A
79548941 AATTTTAGTCC
1 AATTTTAGTCC
79548952 TAACCTAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (31 bp):
AATTTTAGTCCCTATACTTTTCAACTTGGTA
Found at i:79552140 original size:13 final size:13
Alignment explanation
Indices: 79552122--79552159 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
79552112 ATATAACTCC
79552122 AAAAATATTTAAT
1 AAAAATATTTAAT
79552135 AAAAATATTTTAAT
1 AAAAATA-TTTAAT
79552149 AAAAATATTTA
1 AAAAATATTTA
79552160 CAAATTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AAAAATATTTAAT
Found at i:79552430 original size:24 final size:24
Alignment explanation
Indices: 79552403--79552448 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
79552393 AAACAACAAA
*
79552403 ACTTAACTTTATGAATTTAACAGC
1 ACTTAACTTTATGAACTTAACAGC
79552427 ACTTAACTTTATGAACTTAACA
1 ACTTAACTTTATGAACTTAACA
79552449 ATTATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (24 bp):
ACTTAACTTTATGAACTTAACAGC
Found at i:79553067 original size:61 final size:60
Alignment explanation
Indices: 79552997--79553122 Score: 146
Period size: 61 Copynumber: 2.1 Consensus size: 60
79552987 TCTTAAATAT
* * ** * * * * *
79552997 TAAAAATTCAACAAATTTAGCCCTC-AATGTTTATAAAATTTGTCATTTTAGTTCTAATTC
1 TAAAAATTCAAAAAATTT-GCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
79553057 TAAAAGATTCAAAAAATTTGCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
1 TAAAA-ATTCAAAAAATTTGCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
79553118 TAAAA
1 TAAAA
79553123 CTTAATATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
60 10 0.18
61 45 0.82
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (60 bp):
TAAAAATTCAAAAAATTTGCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
Found at i:79555105 original size:24 final size:24
Alignment explanation
Indices: 79555060--79555119 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
79555050 ATTTTTCGTA
79555060 AATTT-ATAATTTATAATTTTTAAG
1 AATTTAATAATTTATAATTTTT-AG
79555084 AATTTAATATATTTAT-A-TTTTAG
1 AATTTAATA-ATTTATAATTTTTAG
*
79555107 ATTTTAA-AATTTA
1 AATTTAATAATTTA
79555120 GGCTAACGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
21 5 0.15
22 1 0.03
23 8 0.24
24 9 0.27
25 4 0.12
26 6 0.18
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (24 bp):
AATTTAATAATTTATAATTTTTAG
Found at i:79558481 original size:4 final size:4
Alignment explanation
Indices: 79558459--79558497 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
79558449 ACGAAAATAG
* *
79558459 AGAA GGAA AGAA GGAA AGAA AGAAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AG-AA AGAA AGAA AGAA AG
79558498 GGAAATTAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:79558487 original size:17 final size:17
Alignment explanation
Indices: 79558465--79558497 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
79558455 ATAGAGAAGG
*
79558465 AAAGAAGGAAAGAAAGA
1 AAAGAAAGAAAGAAAGA
79558482 AAAGAAAGAAAGAAAG
1 AAAGAAAGAAAGAAAG
79558498 GGAAATTAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (17 bp):
AAAGAAAGAAAGAAAGA
Found at i:79561647 original size:28 final size:28
Alignment explanation
Indices: 79561588--79561648 Score: 115
Period size: 27 Copynumber: 2.2 Consensus size: 28
79561578 AAGTAACTAT
79561588 GCAAGTAACCGTTCGGGGGGCACTTGTC
1 GCAAGTAACCGTTCGGGGGGCACTTGTC
79561616 -CAAGTAACCGTTCGGGGGGCACTTGTC
1 GCAAGTAACCGTTCGGGGGGCACTTGTC
79561643 GCAAGT
1 GCAAGT
79561649 GGCCCAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.20, C:0.25, G:0.34, T:0.21
Consensus pattern (28 bp):
GCAAGTAACCGTTCGGGGGGCACTTGTC
Found at i:79563922 original size:22 final size:22
Alignment explanation
Indices: 79563888--79563935 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
79563878 AAATAACCAG
79563888 AAAA-TTTCCAAATTTCTTTTT
1 AAAATTTTCCAAATTTCTTTTT
*
79563909 AAAATTTTCGAAATTTCTTTTT
1 AAAATTTTCCAAATTTCTTTTT
79563931 AAAAT
1 AAAAT
79563936 AATTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (22 bp):
AAAATTTTCCAAATTTCTTTTT
Found at i:79576966 original size:38 final size:40
Alignment explanation
Indices: 79576892--79576971 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
79576882 CGAAGCCTTG
*
79576892 ATATGTGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
1 ATATGCGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
79576932 ATATGCGGGTGAGAAGTCATT-AAAAAAAAA-CTATGGTC
1 ATATGCGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
79576970 AT
1 AT
79576972 TTAAAATTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 10 0.26
39 9 0.23
40 20 0.51
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (40 bp):
ATATGCGGGTGAGAAGTCATTAAAAAAAAAACCTATGGTC
Found at i:79583695 original size:17 final size:17
Alignment explanation
Indices: 79583675--79583709 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79583665 TATGTATGAC
79583675 TTTGAAATTGAATGTGA
1 TTTGAAATTGAATGTGA
* *
79583692 TTTGATATTGAATTTGA
1 TTTGAAATTGAATGTGA
79583709 T
1 T
79583710 ACTGTATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (17 bp):
TTTGAAATTGAATGTGA
Found at i:79584090 original size:17 final size:18
Alignment explanation
Indices: 79584057--79584090 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
79584047 ATATATATAT
*
79584057 ATAACCCAATTAGCCCAA
1 ATAACCCAATTACCCCAA
79584075 ATAACCC-ATTACCCCA
1 ATAACCCAATTACCCCA
79584091 GGCTCAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.38, G:0.03, T:0.18
Consensus pattern (18 bp):
ATAACCCAATTACCCCAA
Found at i:79587343 original size:43 final size:42
Alignment explanation
Indices: 79587214--79587388 Score: 161
Period size: 42 Copynumber: 4.1 Consensus size: 42
79587204 TATAGGTTTA
* * *
79587214 TACTTCGGTATATCCGATGATGCACTTATGTACTAGTATATT
1 TACTTCGGTTTATCCGATGATGCACTTATGTGCTAGTATAAT
* * * * * * *
79587256 TTCTTCGGCTTATCTGATAATGCACTTACGTGCTAGTTTGAT
1 TACTTCGGTTTATCCGATGATGCACTTATGTGCTAGTATAAT
* *
79587298 TACTTCGGTTTATTCGATGATGCACTATGTGTGCTAGTATAAT
1 TACTTCGGTTTATCCGATGATGCACT-TATGTGCTAGTATAAT
* * * * * * *
79587341 TACTTTGATTCATCCAATGATGCACCTTGTGTGCCAGTTTAAT
1 TACTTCGGTTTATCCGATGATGCA-CTTATGTGCTAGTATAAT
79587384 TACTT
1 TACTT
79587389 TGGCTTGCCC
Statistics
Matches: 105, Mismatches: 26, Indels: 3
0.78 0.19 0.02
Matches are distributed among these distances:
42 53 0.50
43 50 0.48
44 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.42
Consensus pattern (42 bp):
TACTTCGGTTTATCCGATGATGCACTTATGTGCTAGTATAAT
Found at i:79587404 original size:43 final size:42
Alignment explanation
Indices: 79587312--79587416 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 42
79587302 TCGGTTTATT
*
79587312 CGATGATGCACTATGTGTGCTAGTATAATTACTTTGATTCATC
1 CGATGATGCACTATGTGTGCCAGTATAATTACTTTGATTCA-C
* * *
79587355 CAATGATGCACCT-TGTGTGCCAGTTTAATTACTTTGGCTTGC-C
1 CGATGATGCA-CTATGTGTGCCAGTATAATTACTTT-GATT-CAC
* *
79587398 CGATGATGTACTATTTGTG
1 CGATGATGCACTATGTGTG
79587417 TCAAGTATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.04
43 43 0.84
44 5 0.10
45 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (42 bp):
CGATGATGCACTATGTGTGCCAGTATAATTACTTTGATTCAC
Found at i:79590495 original size:46 final size:47
Alignment explanation
Indices: 79590391--79590565 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 47
79590381 GGATATTGTG
* * *
79590391 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAACATTGAGATGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGAGATGA
* * *
79590438 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGAGATG-A
* * *
79590485 AGCCAATGTAAGA-CATGTCTGGGACAT-ACATCG-GCTATGAGATG-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-TGAGATGA
79590529 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
79590566 ATCCTACCCC
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 54 0.50
47 15 0.14
48 12 0.11
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGAGATGA
Found at i:79591573 original size:13 final size:13
Alignment explanation
Indices: 79591555--79591589 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
79591545 CCGTGTGAAA
79591555 GACACGAGCTACG
1 GACACGAGCTACG
79591568 GACACGAGCTACG
1 GACACGAGCTACG
79591581 GACACGAGC
1 GACACGAGC
79591590 ATGTGCCAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.31, T:0.06
Consensus pattern (13 bp):
GACACGAGCTACG
Done.