Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 251 of 318
Found at i:79926522 original size:33 final size:34
Alignment explanation
Indices: 79926453--79926526 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
79926443 TTGCATTTAA
79926453 GATACTGTTACTGTAATGAGCTAAGGCCCACACT
1 GATACTGTTACTGTAATGAGCTAAGGCCCACACT
*
79926487 GATACTGTTACTGTAATGGGCTAAGG-CCACACT
1 GATACTGTTACTGTAATGAGCTAAGGCCCACACT
79926520 GATACTG
1 GATACTG
79926527 GACTGTCACT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 14 0.36
34 25 0.64
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (34 bp):
GATACTGTTACTGTAATGAGCTAAGGCCCACACT
Found at i:79927673 original size:28 final size:27
Alignment explanation
Indices: 79927623--79927726 Score: 77
Period size: 26 Copynumber: 3.9 Consensus size: 27
79927613 ACTGTAAATG
** ** *
79927623 TGGAAGTCCATCAGGAGGATCTTAAATG
1 TGGAAGTCCGCCAGGACTATCTT-AATA
* *
79927651 TGGTAGTCCGCCAGGACTCTCTT-ATA
1 TGGAAGTCCGCCAGGACTATCTTAATA
* *
79927677 TGGAAGTCTGCCAGGACTATCTT-ATG
1 TGGAAGTCCGCCAGGACTATCTTAATA
* * *
79927703 TGAAAGTCCACCAAGACTATCTTA
1 TGGAAGTCCGCCAGGACTATCTTA
79927727 TTTCGAAAGT
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
26 43 0.72
28 17 0.28
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (27 bp):
TGGAAGTCCGCCAGGACTATCTTAATA
Found at i:79927691 original size:26 final size:26
Alignment explanation
Indices: 79927655--79927748 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 26
79927645 TAAATGTGGT
* *
79927655 AGTCCGCCAGGACTCTCTTATATGGA
1 AGTCCGCCAGGACTATCTTATATGAA
* *
79927681 AGTCTGCCAGGACTATCTTATGTGAA
1 AGTCCGCCAGGACTATCTTATATGAA
* * *
79927707 AGTCCACCAAGACTATCTTATTTCGAA
1 AGTCCGCCAGGACTATCTTATAT-GAA
**
79927734 AGTTTGCCAGGACTA
1 AGTCCGCCAGGACTA
79927749 CTATTGTAAG
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
26 41 0.75
27 14 0.25
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
AGTCCGCCAGGACTATCTTATATGAA
Found at i:79931693 original size:29 final size:29
Alignment explanation
Indices: 79931609--79931849 Score: 150
Period size: 29 Copynumber: 8.3 Consensus size: 29
79931599 ATCTCTGAAT
* * *
79931609 GGATGCTTTTATGACTATCTCTATTATAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* * * * * *
79931638 GGAAGCCTTTGAGG-TGACCTTTGTTAAAA
1 GGATGCTTTTGTGGCT-ATCTCTATTAAAA
* *
79931667 GGATGCTTTTGTGGCTATCTCAATTAAAT
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* *
79931696 GAATG-TCTTTGTGGCTATCTCTATGAAAA
1 GGATGCT-TTTGTGGCTATCTCTATTAAAA
* * * * *
79931725 GGAAGCCTATGTGGCTATCTTTGTTAAAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* * * *
79931754 GGAT-ATCTTGTGGTTATCTCTATCAAAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
* * *
79931782 AGATGCCTTTTGTGGTTATCTAT-TTCAAAA
1 GGATG-CTTTTGTGGCTATCTCTATT-AAAA
* * *
79931812 GGATGCCTTTGTGGCCATCTCTGTT-AAA
1 GGATGCTTTTGTGGCTATCTCTATTAAAA
79931840 GGAATGCTTT
1 GG-ATGCTTT
79931850 GTGACAAACT
Statistics
Matches: 155, Mismatches: 48, Indels: 18
0.70 0.22 0.08
Matches are distributed among these distances:
28 26 0.17
29 104 0.67
30 25 0.16
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (29 bp):
GGATGCTTTTGTGGCTATCTCTATTAAAA
Found at i:79931747 original size:87 final size:88
Alignment explanation
Indices: 79931610--79931849 Score: 222
Period size: 87 Copynumber: 2.8 Consensus size: 88
79931600 TCTCTGAATG
* * * * * *
79931610 GATG-CTTTTATGACTATCTCTATTATAAGGAAGCCTTTGAGG-TGACCTTTGTTAAAAGGATGC
1 GATGCCTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCT-ATCTTTGTTAAAAGGATGC
* *
79931673 TTTTGTGGCTATCTCAAT-TAAAT
65 TTTTGTGGCTATCTCAATCAAAAA
* * * *
79931696 GAATGTC-TTTGTGGCTATCTCTATGAAAAGGAAGCCTATGTGGCTATCTTTGTTAAAAGGAT-A
1 G-ATGCCTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCTATCTTTGTTAAAAGGATGC
* * *
79931759 TCTTGTGGTTATCTCTATCAAAAA
65 TTTTGTGGCTATCTCAATCAAAAA
* * * * * *
79931783 GATGCCTTTTGTGGTTATCTATTTCAAAAGGATGCCTTTGTGGCCATCTCTGTT-AAAGGAATGC
1 GATGCCTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCTATCTTTGTTAAAAGG-ATGC
79931847 TTT
65 TTT
79931850 GTGACAAACT
Statistics
Matches: 123, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
86 25 0.20
87 94 0.76
88 4 0.03
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (88 bp):
GATGCCTTTTGTGGCTATCTCTATCAAAAGGAAGCCTTTGTGGCTATCTTTGTTAAAAGGATGCT
TTTGTGGCTATCTCAATCAAAAA
Found at i:79931797 original size:30 final size:29
Alignment explanation
Indices: 79931761--79931825 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
79931751 AAAGGATATC
*
79931761 TTGTGGTTATCTCTATCAAAAAGATGCCTT
1 TTGTGGTTATCTATATCAAAAAGATGCC-T
* *
79931791 TTGTGGTTATCTATTTCAAAAGGATGCCT
1 TTGTGGTTATCTATATCAAAAAGATGCCT
79931820 TTGTGG
1 TTGTGG
79931826 CCATCTCTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.42
Consensus pattern (29 bp):
TTGTGGTTATCTATATCAAAAAGATGCCT
Found at i:79932739 original size:14 final size:13
Alignment explanation
Indices: 79932701--79932740 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
79932691 AAGAACTTCT
79932701 ATAGTAGCCATAA
1 ATAGTAGCCATAA
79932714 ATAGTAGCCATACA
1 ATAGTAGCCATA-A
79932728 AT-GTACGCCATAA
1 ATAGTA-GCCATAA
79932741 GAAATTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (13 bp):
ATAGTAGCCATAA
Found at i:79938278 original size:25 final size:25
Alignment explanation
Indices: 79938250--79938299 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
79938240 CCTAATTCTT
79938250 CAAGAAATCAACAATGGTAACTTTC
1 CAAGAAATCAACAATGGTAACTTTC
79938275 CAAGAAATCAACAATGGTAACTTTC
1 CAAGAAATCAACAATGGTAACTTTC
79938300 TAAAGATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (25 bp):
CAAGAAATCAACAATGGTAACTTTC
Found at i:79938312 original size:25 final size:25
Alignment explanation
Indices: 79938251--79938305 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
79938241 CTAATTCTTC
*
79938251 AAGAAATCAACAATGGTAACTTTCC
1 AAGAAATCAACAATGGTAACTTTCA
79938276 AAGAAATCAACAATGGTAACTTTCTA
1 AAGAAATCAACAATGGTAACTTTC-A
79938302 AAGA
1 AAGA
79938306 TTTAACAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (25 bp):
AAGAAATCAACAATGGTAACTTTCA
Found at i:79938546 original size:24 final size:24
Alignment explanation
Indices: 79938519--79938590 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
79938509 CTATTTATAC
* *
79938519 TTTAGATTAACTTTATTAATTTAG
1 TTTAGATTAACTTAATTAATTTAA
79938543 TTTA-ACTTAACTTAATTAATTTAA
1 TTTAGA-TTAACTTAATTAATTTAA
*
79938567 TTTAG-TTAA-TTAAGATAATTTAA
1 TTTAGATTAACTTAA-TTAATTTAA
79938590 T
1 T
79938591 ATTATTAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
22 4 0.10
23 14 0.33
24 24 0.57
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (24 bp):
TTTAGATTAACTTAATTAATTTAA
Found at i:79938547 original size:19 final size:20
Alignment explanation
Indices: 79938519--79938577 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 20
79938509 CTATTTATAC
*
79938519 TTTAGATTAACTTTA-TTAA
1 TTTAGTTTAACTTTACTTAA
*
79938538 TTTAGTTTAACTTAACTTAA
1 TTTAGTTTAACTTTACTTAA
* *
79938558 -TTAATTTAA-TTTAGTTAA
1 TTTAGTTTAACTTTACTTAA
79938576 TT
1 TT
79938578 AAGATAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
18 7 0.21
19 22 0.67
20 4 0.12
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTAGTTTAACTTTACTTAA
Found at i:79938585 original size:18 final size:18
Alignment explanation
Indices: 79938554--79938588 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79938544 TTAACTTAAC
**
79938554 TTAATTAATTTAATTTAG
1 TTAATTAAGATAATTTAG
79938572 TTAATTAAGATAATTTA
1 TTAATTAAGATAATTTA
79938589 ATATTATTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
TTAATTAAGATAATTTAG
Found at i:79944229 original size:66 final size:66
Alignment explanation
Indices: 79944154--79944349 Score: 261
Period size: 66 Copynumber: 3.0 Consensus size: 66
79944144 ATGAACTTGG
* * * *
79944154 CTATGGCAACATGTGGAGTTCGCTAGGACATTAAAGATTGGGTACATGTGTAAG-CCTTTAGCTC
1 CTATGGCAACATGTGGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACC-TTAGCTC
79944218 GA
65 GA
*
79944220 CTATGGCAACGA-GTGGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTC
1 CTATGGCAAC-ATGTGGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTC
79944284 GA
65 GA
** ** *
79944286 CTATGGCAATGTGTGGAGTCCGCCAGGACATTAAACATGGGGTTATGTGTGTAAGACCATAGCT
1 CTATGGCAACATGTGGAGTCCGCCAGGACATTAAACATGGGG-TACATGTGTAAGACCTTAGCT
79944350 TGGCTATGTT
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
66 94 0.82
67 21 0.18
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (66 bp):
CTATGGCAACATGTGGAGTCCGCCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTCG
A
Found at i:79944372 original size:67 final size:66
Alignment explanation
Indices: 79944154--79944372 Score: 217
Period size: 66 Copynumber: 3.3 Consensus size: 66
79944144 ATGAACTTGG
* * * * * * *
79944154 CTATGGCAACATGTGGAGTTCGCTAGGACATTAAAGATTGGGTACATGTGTAAG-CCTTTAGCTC
1 CTATGGCAACATGTAGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACC-ATAGCTC
79944218 GA
65 GA
* *
79944220 CTATGGCAACGA-GTGGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACCTTAGCTC
1 CTATGGCAAC-ATGTAGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACCATAGCTC
79944284 GA
65 GA
** * * ** *
79944286 CTATGGCAATGTGTGGAGTCCGCCAGGACATTAAACATGGGGTTATGTGTGTAAGACCATAGCTT
1 CTATGGCAACATGTAGAGTCCACCAGGACATTAAACATGGGG-TACATGTGTAAGACCATAGCTC
*
79944351 GG
65 GA
** *
79944353 CTATGTTAGCATGTAGAGTC
1 CTATGGCAACATGTAGAGTC
79944373 TGTAAATCAA
Statistics
Matches: 130, Mismatches: 19, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
66 94 0.72
67 36 0.28
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (66 bp):
CTATGGCAACATGTAGAGTCCACCAGGACATTAAACATGGGGTACATGTGTAAGACCATAGCTCG
A
Found at i:79945159 original size:18 final size:18
Alignment explanation
Indices: 79945132--79945178 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
79945122 TGAGGGTACT
*
79945132 AGAAAGGGACCTTATTCA
1 AGAAAAGGACCTTATTCA
* *
79945150 AGAAATGGACCTTATTTA
1 AGAAAAGGACCTTATTCA
79945168 AGAAAAGGACC
1 AGAAAAGGACC
79945179 AAGCATAGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (18 bp):
AGAAAAGGACCTTATTCA
Found at i:79961130 original size:26 final size:24
Alignment explanation
Indices: 79961101--79961149 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
79961091 ATAAAAAAAG
*
79961101 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
79961127 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
79961150 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:79961169 original size:21 final size:21
Alignment explanation
Indices: 79961120--79961178 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
79961110 ATAATAAATC
*
79961120 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
79961140 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
79961162 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
79961179 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:79963286 original size:19 final size:19
Alignment explanation
Indices: 79963240--79963287 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
79963230 GTATATATTT
79963240 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
79963258 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
79963277 TAAGTTTTATT
1 TAAATTTTATT
79963288 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:79963363 original size:42 final size:42
Alignment explanation
Indices: 79963304--79963388 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
79963294 CTAGGAATAT
* *
79963304 TTTTATTTTATCTTTTAGTAGTTTATTAGAGTAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
* *
79963346 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
79963388 T
1 T
79963389 CTTCCCAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:79967999 original size:19 final size:19
Alignment explanation
Indices: 79967953--79968000 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
79967943 GTATATATTT
79967953 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
79967971 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
79967990 TAAGTTTTATT
1 TAAATTTTATT
79968001 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:79968076 original size:42 final size:42
Alignment explanation
Indices: 79968017--79968101 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
79968007 CTAGGAATAT
79968017 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
* *
79968059 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
79968101 T
1 T
79968102 CTTCCCAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:79977127 original size:42 final size:45
Alignment explanation
Indices: 79977002--79977169 Score: 105
Period size: 48 Copynumber: 3.6 Consensus size: 45
79976992 ATGCCAACGT
* * * * *
79977002 CATATCCCAAATATGGTCTTACATGAGATCACCA-CTCGATGCCAATGC
1 CATACCCCAGATATGGTCTTACA-GGGATCA-CATATCGATACC-A-GC
** * *
79977050 CATGTCCCAGACATGGTCTTACATGGGATCTCATATC-A-A-C-GC
1 CATACCCCAGATATGGTCTTACA-GGGATCACATATCGATACCAGC
79977092 CATACCCCAGATATGGTCTTACA-GGATAACACATATCGATACCGATGC
1 CATACCCCAGATATGGTCTTACAGGGAT--CACATATCGATACC-A-GC
* *
79977140 CATATCCCAGATATGGTCTTATACGGGATC
1 CATACCCCAGATATGGTCTTACA-GGGATC
79977170 TTGTTAACCC
Statistics
Matches: 96, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
40 4 0.04
42 29 0.30
43 1 0.01
44 1 0.01
45 2 0.02
47 3 0.03
48 52 0.54
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (45 bp):
CATACCCCAGATATGGTCTTACAGGGATCACATATCGATACCAGC
Found at i:79977149 original size:90 final size:90
Alignment explanation
Indices: 79976996--79977170 Score: 219
Period size: 90 Copynumber: 1.9 Consensus size: 90
79976986 AATAAGATGC
* * * * * *
79976996 CAACGTCATATCCCAAATATGGTCTTACATGAGATCACCACTCGATGCCAATGCCATGTCCCAGA
1 CAACGCCATACCCCAAATATGGTCTTACATGAGATAACCAATCGATACCAATGCCATATCCCAGA
*
79977061 CATGGTCTTACATGGGATCTCATAT
66 CATGGTCTTACACGGGATCTCATAT
* *
79977086 CAACGCCATACCCCAGATATGGTCTTACA-G-GATAACACATATCGATACCGATGCCATATCCCA
1 CAACGCCATACCCCAAATATGGTCTTACATGAGATAAC-CA-ATCGATACCAATGCCATATCCCA
* *
79977149 GATATGGTCTTATACGGGATCT
64 GACATGGTCTTACACGGGATCT
79977171 TGTTAACCCG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
88 5 0.07
89 3 0.04
90 64 0.89
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (90 bp):
CAACGCCATACCCCAAATATGGTCTTACATGAGATAACCAATCGATACCAATGCCATATCCCAGA
CATGGTCTTACACGGGATCTCATAT
Found at i:79980348 original size:46 final size:46
Alignment explanation
Indices: 79980295--79980388 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
79980285 TTCAAATGTT
79980295 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
1 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
79980341 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
1 ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
79980387 AT
1 AT
79980389 AGGTCGGGCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (46 bp):
ATTGATTTATGCTACGCATTGTATTGTGTTGTATTTAGACCTGCTC
Found at i:79980708 original size:15 final size:15
Alignment explanation
Indices: 79980688--79980717 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79980678 ATTGTATAAA
*
79980688 AATTATTTTATTATT
1 AATTATGTTATTATT
79980703 AATTATGTTATTATT
1 AATTATGTTATTATT
79980718 TTAAAGGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
AATTATGTTATTATT
Found at i:79980744 original size:30 final size:30
Alignment explanation
Indices: 79980701--79980759 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
79980691 TATTTTATTA
*
79980701 TTAATTATGTTATTATTTTAAAGGAATTTG
1 TTAATTATATTATTATTTTAAAGGAATTTG
* * *
79980731 TTAATTTTATTATTATTTTAGAGGTATTT
1 TTAATTATATTATTATTTTAAAGGAATTT
79980760 ACTTGTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (30 bp):
TTAATTATATTATTATTTTAAAGGAATTTG
Found at i:79983719 original size:133 final size:133
Alignment explanation
Indices: 79983497--79983949 Score: 358
Period size: 133 Copynumber: 3.4 Consensus size: 133
79983487 CGAAGGGATC
* * * * * * * *
79983497 TTCGATCGTTTTGAACAAATGAAAAAGCACAGCCCAACACGATAGGGCACGATTCTCGAATTGCC
1 TTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCAAATTGCC
* * *
79983562 AAACATCGAACATCGCATTTGTTTTAAAGGGTTTTCTTAAAAAACATGAGTGAAAACCTAAAGGA
66 AAACATCGAACATCGCATTCGTTTTAAAGGATTTTCTTAAAAAACATGACTGAAAACCTAAAGGA
79983627 ATA
131 ATA
* * *
79983630 TTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGTACGATAGGGCATGATTCCCAAATTGTC
1 TTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCAAATTGCC
* ** * * * * * *** *
79983695 GAAC-TCCGAGTATTGCCTTCGTTTTAAAGGATTTTTTTAGAAGACATGACTGAAATTTTGAAGG
66 AAACAT-CGAACATCGCATTCGTTTTAAAGGATTTTCTTAAAAAACATGACTGAAAACCTAAAGG
*
79983759 GATA
130 AATA
* * ** * **
79983763 TTTGATTATTTT-AAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGTGAATTG
1 TTCGATTGTTTTGAA-CAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCC-CAAATTG
* * * * * * ** **
79983827 CCAAATATCGCACATCGCCTTCG-TTT-AAGGAATTT-TTAAAAGATATGGGTGAAATTCTAAAG
64 CCAAACATCGAACATCGCATTCGTTTTAAAGGATTTTCTTAAAAAACATGACTGAAAACCTAAAG
**
79983889 GAACC
129 GAATA
** * * ** * *
79983894 TTCGATTACTTTGAGCAAATGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
1 TTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCC
79983950 GCGAAATACC
Statistics
Matches: 257, Mismatches: 58, Indels: 12
0.79 0.18 0.04
Matches are distributed among these distances:
131 72 0.28
132 12 0.05
133 153 0.60
134 19 0.07
135 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (133 bp):
TTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCAAATTGCC
AAACATCGAACATCGCATTCGTTTTAAAGGATTTTCTTAAAAAACATGACTGAAAACCTAAAGGA
ATA
Found at i:79986607 original size:19 final size:19
Alignment explanation
Indices: 79986565--79986608 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
79986555 TGGTTTGATT
* *
79986565 TTATTTTTTTATTTTTTTA
1 TTATTTATTTATTTTTATA
79986584 TTATTTATTTATTTTGTATA
1 TTATTTATTTATTTT-TATA
79986604 -TATTT
1 TTATTT
79986609 TGGTTTCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (19 bp):
TTATTTATTTATTTTTATA
Found at i:79990891 original size:393 final size:393
Alignment explanation
Indices: 79990166--79990938 Score: 1429
Period size: 393 Copynumber: 2.0 Consensus size: 393
79990156 GAAAATGGGG
79990166 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
1 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
*
79990231 TGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGCTATATAGCTTACTC
66 CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGCTATATAGCTTACTC
* *
79990296 CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTTAGATTAGAGATTGTCGAAGATTCGA
131 CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTCAGATCAGAGATTGTCGAAGATTCGA
*
79990361 ATCACACTATTAAACTTTCATTTTGGGTAATTATGATCTTACTATTTTGAAAGTATGGCATGTAT
196 ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTACTATTTTGAAAGTATGGCATGTAT
* *
79990426 AGGAACTTGGTCATTTTGTTATATGTGTTATTATGATTTTAGCCAAAGTATTGGCTTGTAATTTA
261 AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTAGCCAAAGTATTGGCTTGTAATGTA
*
79990491 TCAAAGGCTTTATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATGAGGTAAGTTT
326 TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATGAGGTAAGTTT
79990556 GGT
391 GGT
79990559 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
1 GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
*
79990624 CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGCTATATAGCTTACTT
66 CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGCTATATAGCTTACTC
* * *
79990689 CGTTTATTTTCCATGTTTTATAGTACTGCCAAGCTAACTCAGATCAGAGATTTTCGGAGATTCGA
131 CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTCAGATCAGAGATTGTCGAAGATTCGA
*
79990754 ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTAGTATTTTGAAAGTATGGCATGTAT
196 ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTACTATTTTGAAAGTATGGCATGTAT
*
79990819 AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTATCCAAAGTATTGGCTTGTAATGTA
261 AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTAGCCAAAGTATTGGCTTGTAATGTA
79990884 TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATG
326 TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATG
79990939 GTTGTAAGCT
Statistics
Matches: 367, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
393 367 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (393 bp):
GATGGAATGAATTATGATCATGAGACTATAGTAAATTTACATTTAATCATGTTATATTATTTGAA
CGTTATATGTATGGTAAGGTTGCTTATTTCTTGCATACGAGCTTACTAAGCTATATAGCTTACTC
CGTTTATTTTCCATGTTTTATAGTACAGCCAAGCTAACTCAGATCAGAGATTGTCGAAGATTCGA
ATCACACTATCAAACTTTCATTTTGGGTAATTATGATCTTACTATTTTGAAAGTATGGCATGTAT
AGGAACTTGGTCATTTTGTTATATGTGTCATTATGATTTTAGCCAAAGTATTGGCTTGTAATGTA
TCAAAGGCTTGATTTGATATTTGGCCATGTAAATTGGCTTATTTTGGCTAACATGAGGTAAGTTT
GGT
Found at i:79997448 original size:46 final size:45
Alignment explanation
Indices: 79997395--79997570 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
79997385 TATTTGGGCA
79997395 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
79997441 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
79997488 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
79997534 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79997571 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:79997550 original size:93 final size:93
Alignment explanation
Indices: 79997391--79997562 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
79997381 AGGATATTTG
* *
79997391 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
79997456 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
79997484 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
79997549 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
79997563 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:80003060 original size:30 final size:31
Alignment explanation
Indices: 80003015--80003074 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
80003005 AAAATGTAAA
*
80003015 TGATTACAGGGTATGAAAATGCAAATAAGAG
1 TGATTACAGGGTATGAAAATGAAAATAAGAG
*
80003046 TGATTACA-GGTATGATAATGAAAATAAGA
1 TGATTACAGGGTATGAAAATGAAAATAAGA
80003075 ATATTGATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.47, C:0.05, G:0.23, T:0.25
Consensus pattern (31 bp):
TGATTACAGGGTATGAAAATGAAAATAAGAG
Found at i:80003435 original size:21 final size:21
Alignment explanation
Indices: 80003411--80003450 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
80003401 CGAAACATTG
80003411 AAATCAAATC-TTGAAATCAGA
1 AAATCAAA-CATTGAAATCAGA
*
80003432 AAATGAAACATTGAAATCA
1 AAATCAAACATTGAAATCA
80003451 AATCTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.23
Consensus pattern (21 bp):
AAATCAAACATTGAAATCAGA
Found at i:80003445 original size:34 final size:34
Alignment explanation
Indices: 80003402--80003473 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
80003392 TCCGTTAGGC
80003402 GAAACATTGAAATCAAATCTTGAAATCAGAAAAT
1 GAAACATTGAAATCAAATCTTGAAATCAGAAAAT
80003436 GAAACATTGAAATCAAATCTTGAAATCAGAAAAT
1 GAAACATTGAAATCAAATCTTGAAATCAGAAAAT
80003470 GAAA
1 GAAA
80003474 TAAAACGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.54, C:0.11, G:0.12, T:0.22
Consensus pattern (34 bp):
GAAACATTGAAATCAAATCTTGAAATCAGAAAAT
Found at i:80012046 original size:64 final size:64
Alignment explanation
Indices: 80011967--80012096 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
80011957 TGGGTTAGTA
*
80011967 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACTCGTTCCTAGAACTCC
1 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
80012031 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
1 AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
80012095 AG
1 AG
80012097 AAGTTGGGTA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (64 bp):
AGTGCTTCCTGAATATCAACTTCTTTTACGAGCTAACTCAAAATCAACCCGTTCCTAGAACTCC
Found at i:80013111 original size:11 final size:11
Alignment explanation
Indices: 80013095--80013119 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80013085 CCACCAGTAT
80013095 AAAATACTAAA
1 AAAATACTAAA
80013106 AAAATACTAAA
1 AAAATACTAAA
80013117 AAA
1 AAA
80013120 TCTAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATACTAAA
Found at i:80013216 original size:9 final size:9
Alignment explanation
Indices: 80013202--80013258 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
80013192 ATTTGTCAAG
*
80013202 TTTTTATTT
1 TTTTTACTT
80013211 TTTTTACTT
1 TTTTTACTT
80013220 TTTTTACTT
1 TTTTTACTT
80013229 TTTTTACTT
1 TTTTTACTT
*
80013238 TTTTAAC-T
1 TTTTTACTT
*
80013246 ATTTTA-TT
1 TTTTTACTT
80013254 TTTTT
1 TTTTT
80013259 CTTATATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
8 10 0.24
9 32 0.76
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTACTT
Found at i:80013336 original size:18 final size:18
Alignment explanation
Indices: 80013301--80013345 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
80013291 TTTTTTAAGT
*
80013301 TTTATATTATTTACTTAA
1 TTTATATTACTTACTTAA
* *
80013319 TTTATTTTACTTATTTAA
1 TTTATATTACTTACTTAA
80013337 TTTATATTA
1 TTTATATTA
80013346 TTAATTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTATATTACTTACTTAA
Found at i:80013419 original size:22 final size:22
Alignment explanation
Indices: 80013377--80013420 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
80013367 TATATATTTA
80013377 AAATGTTTTATAATATTTTTTT
1 AAATGTTTTATAATATTTTTTT
80013399 AAAT-TTTT-TAATTATTGTTTTT
1 AAATGTTTTATAA-TATT-TTTTT
80013421 TAAAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.15
21 8 0.40
22 9 0.45
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (22 bp):
AAATGTTTTATAATATTTTTTT
Found at i:80013524 original size:36 final size:37
Alignment explanation
Indices: 80013455--80013524 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 37
80013445 TATATTTGTG
**
80013455 AAATTAATTATTTATAAATTTTAAAAATGTAATTTTC
1 AAATTAATTATTTATAAATTTTAAAAAAATAATTTTC
*
80013492 AAATTAATTTTTTA-AAATTTTAAAAAAATAATT
1 AAATTAATTATTTATAAATTTTAAAAAAATAATT
80013525 ATTTTTTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 17 0.57
37 13 0.43
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (37 bp):
AAATTAATTATTTATAAATTTTAAAAAAATAATTTTC
Found at i:80013580 original size:17 final size:17
Alignment explanation
Indices: 80013560--80013606 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
80013550 TGAAGTCTAA
80013560 TTTTTTTCTTATTTTAT
1 TTTTTTTCTTATTTTAT
80013577 TTTTTTATC-TATTTTAT
1 TTTTTT-TCTTATTTTAT
*
80013594 TTATTTTTATTAT
1 TT-TTTTTCTTAT
80013607 ACATTTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTCTTATTTTAT
Found at i:80014204 original size:10 final size:9
Alignment explanation
Indices: 80014186--80014273 Score: 70
Period size: 9 Copynumber: 9.4 Consensus size: 9
80014176 TAAAATTTAA
80014186 AAAATATTT
1 AAAATATTT
80014195 AAAATCATTT
1 AAAAT-ATTT
*
80014205 AAAATATTA
1 AAAATATTT
80014214 AAAATATTT
1 AAAATATTT
*
80014223 TAAATCATTT
1 AAAAT-ATTT
* *
80014233 TAAATGTTTT
1 AAAAT-ATTT
* *
80014243 ATAATATTA
1 AAAATATTT
80014252 AAAATATATT
1 AAAATAT-TT
*
80014262 -TAATATTT
1 AAAATATTT
80014270 AAAA
1 AAAA
80014274 AATAATTTGA
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
8 2 0.03
9 35 0.56
10 25 0.40
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:80014210 original size:19 final size:18
Alignment explanation
Indices: 80014186--80014273 Score: 70
Period size: 19 Copynumber: 4.7 Consensus size: 18
80014176 TAAAATTTAA
80014186 AAAATATTTAAAATCATTT
1 AAAATATTTAAAAT-ATTT
*
80014205 AAAATATTAAAAATATTT
1 AAAATATTTAAAATATTT
* * *
80014223 TAAATCATTTTAAATGTTTT
1 AAAAT-ATTTAAAAT-ATTT
* *
80014243 ATAATATTAAAAATATATT
1 AAAATATTTAAAATAT-TT
*
80014262 -TAATATTTAAAA
1 AAAATATTTAAAA
80014274 AATAATTTGA
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
18 20 0.36
19 29 0.53
20 6 0.11
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (18 bp):
AAAATATTTAAAATATTT
Found at i:80014296 original size:32 final size:32
Alignment explanation
Indices: 80014243--80014332 Score: 101
Period size: 32 Copynumber: 2.7 Consensus size: 32
80014233 TAAATGTTTT
80014243 ATAATATTAAAAATATATTTAATATTTAAAAA
1 ATAATATTAAAAATATATTTAATATTTAAAAA
*
80014275 ATAAT-TTGAAAATATATTTTAATATTTATAAAA
1 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
* *
80014308 TATATATATTATAAAACATTTTTAA
1 -ATA-ATATTA-AAAATATATTTAA
80014333 AAAATACATT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
31 10 0.21
32 16 0.33
33 4 0.08
34 3 0.06
35 2 0.04
36 7 0.15
37 6 0.12
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (32 bp):
ATAATATTAAAAATATATTTAATATTTAAAAA
Found at i:80020203 original size:20 final size:21
Alignment explanation
Indices: 80020162--80020203 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
80020152 GTATACGGTC
*
80020162 AAAATGTTTATGAAGTGAAAA
1 AAAATGTGTATGAAGTGAAAA
*
80020183 AAAATGTGT-TGAA-TGACAA
1 AAAATGTGTATGAAGTGAAAA
80020202 AA
1 AA
80020204 TGATGACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (21 bp):
AAAATGTGTATGAAGTGAAAA
Found at i:80020759 original size:27 final size:27
Alignment explanation
Indices: 80020700--80020851 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
80020690 TAAATTGTAC
*
80020700 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
80020728 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80020755 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80020782 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
80020810 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80020837 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80020852 GACTTAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 71 0.62
28 43 0.38
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:80020766 original size:55 final size:55
Alignment explanation
Indices: 80020700--80020851 Score: 234
Period size: 55 Copynumber: 2.8 Consensus size: 55
80020690 TAAATTGTAC
80020700 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * *
80020755 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
80020810 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
80020852 GACTTAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 24 0.27
55 64 0.73
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:80020814 original size:82 final size:82
Alignment explanation
Indices: 80020700--80020851 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
80020690 TAAATTGTAC
* *
80020700 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
80020765 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATGT
* * * *
80020782 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
80020847 GTGCG
66 GTGCG
80020852 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTGACTATGT
Found at i:80023866 original size:47 final size:47
Alignment explanation
Indices: 80023812--80024261 Score: 774
Period size: 47 Copynumber: 9.6 Consensus size: 47
80023802 TATTTGAATA
80023812 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
80023859 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80023906 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80023953 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
80024000 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80024047 AATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
80024094 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80024141 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
80024188 AATGCGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
80024235 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
80024262 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 387 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:80024114 original size:25 final size:25
Alignment explanation
Indices: 80024086--80024211 Score: 77
Period size: 25 Copynumber: 5.3 Consensus size: 25
80024076 CTAATAGCCG
*
80024086 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCGAAAGTGTATAT
* ** ****
80024111 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGCGAAAGTGTATAT
*
80024133 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCGAAAGTGTATAT
* ***
80024158 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-CGAAAGTGTATAT
80024180 ATGTGATGAATGCGAAAGTGTATAT
1 ATGTGATGAATGCGAAAGTGTATAT
80024205 ATGTGAT
1 ATGTGAT
80024212 AGGGCCGAGT
Statistics
Matches: 68, Mismatches: 25, Indels: 16
0.62 0.23 0.15
Matches are distributed among these distances:
22 16 0.24
23 15 0.22
24 15 0.22
25 22 0.32
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGCGAAAGTGTATAT
Found at i:80025391 original size:30 final size:30
Alignment explanation
Indices: 80025355--80025447 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
80025345 GGTCAAATGG
* *
80025355 ACTCGAACCGCCTATATCCGAGTGATATGA
1 ACTCGAACCACCTATGTCCGAGTGATATGA
* * *
80025385 ACTCGAACCACCCATGTTCGGGTGATATGA
1 ACTCGAACCACCTATGTCCGAGTGATATGA
* *
80025415 ACTCGCACCACCTATGTCC-AGGTTATATGA
1 ACTCGAACCACCTATGTCCGA-GTGATATGA
80025445 ACT
1 ACT
80025448 GCTCTGGGAC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (30 bp):
ACTCGAACCACCTATGTCCGAGTGATATGA
Found at i:80028485 original size:18 final size:20
Alignment explanation
Indices: 80028445--80028489 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
80028435 AAAAAAAGAT
80028445 ATTTAATATATATATTTTAAA
1 ATTT-ATATATATATTTTAAA
*
80028466 ATTTATATTTATA-TTT-AA
1 ATTTATATATATATTTTAAA
80028484 ATTTAT
1 ATTTAT
80028490 TAATAGTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 8 0.35
21 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTATATATATATTTTAAA
Found at i:80028660 original size:23 final size:24
Alignment explanation
Indices: 80028609--80028660 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
80028599 TTTTAAATTG
* *
80028609 TAAAAAATATATTACAAAACATTT
1 TAAAATATACATTACAAAACATTT
*
80028633 T-AAATATACATTACAAAA-TTTT
1 TAAAATATACATTACAAAACATTT
80028655 TAAAAT
1 TAAAAT
80028661 TAATAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 4 0.17
23 19 0.79
24 1 0.04
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (24 bp):
TAAAATATACATTACAAAACATTT
Found at i:80028782 original size:27 final size:28
Alignment explanation
Indices: 80028752--80028815 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 28
80028742 TTTTAAAAAA
* * *
80028752 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAAAATTATAATTTCTTAAATG
*
80028779 TA-TTAAAAAATTATAATTTTTTAAATG
1 TATTTAAAAAATTATAATTTCTTAAATG
80028806 TATTTAAAAA
1 TATTTAAAAA
80028816 TTGTATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 20 0.65
27 4 0.13
28 7 0.23
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (28 bp):
TATTTAAAAAATTATAATTTCTTAAATG
Found at i:80028823 original size:26 final size:26
Alignment explanation
Indices: 80028752--80028817 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
80028742 TTTTAAAAAA
* *
80028752 TATTTAAAATATTATGATTTCTTATAT
1 TATTTAAAA-ATTATAATTTCTTAAAT
* *
80028779 TATTAAAAAATTATAATTTTTTAAAT
1 TATTTAAAAATTATAATTTCTTAAAT
80028805 GTATTTAAAAATT
1 -TATTTAAAAATT
80028818 GTATTTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 14 0.42
27 19 0.58
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TATTTAAAAATTATAATTTCTTAAAT
Found at i:80029035 original size:18 final size:18
Alignment explanation
Indices: 80028993--80029039 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 18
80028983 TTATAAAATA
*
80028993 ATATTT-AATATATATTT
1 ATATTTAAATTTATATTT
*
80029010 -T-TTAAAATTTATATTT
1 ATATTTAAATTTATATTT
80029026 ATATTTAAATTTAT
1 ATATTTAAATTTAT
80029040 TAATAGTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 2 0.08
16 11 0.46
17 1 0.04
18 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATATTTAAATTTATATTT
Found at i:80029313 original size:21 final size:19
Alignment explanation
Indices: 80029288--80029352 Score: 76
Period size: 21 Copynumber: 3.2 Consensus size: 19
80029278 TAAAAAATAT
80029288 TTTTAAAAATAATAATTAAAA
1 TTTTAAAAAT-AT-ATTAAAA
*
80029309 TTTTAAAAATATTATAAAACA
1 TTTTAAAAATA-TATTAAA-A
*
80029330 TTTTAAATATATATTAAAA
1 TTTTAAAAATATATTAAAA
80029349 TTTT
1 TTTT
80029353 TTTAAAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 5 0.13
20 12 0.31
21 22 0.56
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTTAAAAATATATTAAAA
Found at i:80029354 original size:21 final size:21
Alignment explanation
Indices: 80029281--80029354 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 21
80029271 ATAAAGTTAA
*
80029281 AAAATATTTTTAAAAATAATAATT
1 AAAAT-TTTTTAAATAT-AT-ATT
**
80029305 AAAATTTTAAAAATAT-TA-T
1 AAAATTTTTTAAATATATATT
**
80029324 AAAACATTTTAAATATATATT
1 AAAATTTTTTAAATATATATT
80029345 AAAATTTTTT
1 AAAATTTTTT
80029355 TAAAATTAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
19 13 0.33
20 3 0.08
21 10 0.26
23 8 0.21
24 5 0.13
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATTTTTTAAATATATATT
Found at i:80029402 original size:36 final size:37
Alignment explanation
Indices: 80029362--80029435 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 37
80029352 TTTTAAAATT
*
80029362 AATAATAT-AAA-TTAAATAAGCAAAATAAAT-TAAGAA
1 AATAATATAAAACTTAAAAAAG-AAAA-AAATCTAAGAA
80029398 AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
1 AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
80029435 A
1 A
80029436 GAGACAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 12 0.35
37 14 0.41
38 8 0.24
ACGTcount: A:0.69, C:0.04, G:0.05, T:0.22
Consensus pattern (37 bp):
AATAATATAAAACTTAAAAAAGAAAAAAATCTAAGAA
Found at i:80029407 original size:18 final size:18
Alignment explanation
Indices: 80029357--80029408 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
80029347 AATTTTTTTA
*
80029357 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
** *
80029375 AAATAAGCAAAATAAATT
1 AAATAAATAATATAAATT
80029393 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
80029409 ACTTAAAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:80030552 original size:34 final size:34
Alignment explanation
Indices: 80030501--80030566 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
80030491 ATAGTGTCTA
80030501 AAAAATAATTTATTAAAAATTATAAAAACTTTAT
1 AAAAATAATTTATTAAAAATTATAAAAACTTTAT
*
80030535 AAAAAT-ATTT-TTATAAAATTTATAAAATCTTT
1 AAAAATAATTTATTA-AAAA-TTATAAAAACTTT
80030567 TTATAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 3 0.10
33 8 0.28
34 18 0.62
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (34 bp):
AAAAATAATTTATTAAAAATTATAAAAACTTTAT
Found at i:80030567 original size:22 final size:24
Alignment explanation
Indices: 80030520--80030572 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 24
80030510 TTATTAAAAA
80030520 TTATAAAAACTTTATAAAAATATTT
1 TTAT-AAAACTTTATAAAAATATTT
*
80030545 TTATAAAA-TTTAT-AAAATCTTT
1 TTATAAAACTTTATAAAAATATTT
80030567 TTATAA
1 TTATAA
80030573 TTTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 14 0.52
23 5 0.19
24 4 0.15
25 4 0.15
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTATAAAACTTTATAAAAATATTT
Found at i:80038328 original size:43 final size:42
Alignment explanation
Indices: 80038280--80038417 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 42
80038270 TATCTCAGGT
*
80038280 ATGGTCTTACATGTTATCTCATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCTCATA-CGATGCCAATGTCCCAGAC
*
80038323 ATGGTCTTATACTG-AATCAT-ATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACA-TGTAATC-TCAT-ACGATGCCAATGTCCCAGAC
* *
80038366 ATGGTCTTACATGTAATCACAGTACGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCTCA-TACGATGCCAATGTCCCAGAC
80038409 ATGGTCTTA
1 ATGGTCTTA
80038418 TGTGACAGCC
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
42 2 0.02
43 77 0.92
44 5 0.06
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCTCATACGATGCCAATGTCCCAGAC
Found at i:80040271 original size:40 final size:40
Alignment explanation
Indices: 80040175--80040392 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
80040165 TGGATGATAA
*
80040175 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
80040216 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80040256 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
80040296 CCGAGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
80040336 CTGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
80040375 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80040393 TACTTGGCTT
Statistics
Matches: 154, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 15 0.10
39 14 0.09
40 97 0.63
41 24 0.16
42 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80049284 original size:15 final size:15
Alignment explanation
Indices: 80049266--80049324 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 15
80049256 TAAAAAATAT
80049266 AATATATTAAATTAA
1 AATATATTAAATTAA
*
80049281 AATATA-TCAA-TAA
1 AATATATTAAATTAA
80049294 AATAT-TT-AATTAA
1 AATATATTAAATTAA
* *
80049307 ATTACATTAAATATAA
1 AATATATTAAAT-TAA
80049323 AA
1 AA
80049325 AAAATTCTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
12 2 0.06
13 15 0.43
14 5 0.14
15 9 0.26
16 4 0.11
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.37
Consensus pattern (15 bp):
AATATATTAAATTAA
Found at i:80049287 original size:35 final size:35
Alignment explanation
Indices: 80049255--80049321 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
80049245 ACCTATATAT
*
80049255 ATAAAAAATATAA-TATATTAAATTAAAATATATCA
1 ATAAAAAATATAATTAAATTAAATT-AAATATATCA
* * *
80049290 ATAAAATATTTAATTAAATTACATTAAATATA
1 ATAAAAAATATAATTAAATTAAATTAAATATA
80049322 AAAAAAATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 18 0.67
36 9 0.33
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (35 bp):
ATAAAAAATATAATTAAATTAAATTAAATATATCA
Found at i:80053422 original size:15 final size:16
Alignment explanation
Indices: 80053404--80053452 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
80053394 ATTTTTTTAA
80053404 AATT-ATCTTTTAATC
1 AATTGATCTTTTAATC
*
80053419 AATTGAT-TTCTAATC
1 AATTGATCTTTTAATC
*
80053434 AATTTGAGCTTTTAATC
1 AA-TTGATCTTTTAATC
80053451 AA
1 AA
80053453 CGTCTACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 13 0.46
16 6 0.21
17 9 0.32
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (16 bp):
AATTGATCTTTTAATC
Found at i:80054935 original size:27 final size:26
Alignment explanation
Indices: 80054879--80054935 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
80054869 CAACCTTAAC
* * *
80054879 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
80054905 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
80054932 CCTA
1 CCTA
80054936 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:80059119 original size:27 final size:26
Alignment explanation
Indices: 80059063--80059119 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
80059053 CAACCTTAAC
* * *
80059063 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
80059089 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
80059116 CCTA
1 CCTA
80059120 TAAAGGTACT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:80060891 original size:46 final size:46
Alignment explanation
Indices: 80060819--80060910 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
80060809 TGCCAGAACC
*
80060819 TTCTCTCCCAAAATTAAAATTGAAGAATTGCCTCGAATTAAATTTA
1 TTCTCTCCCAAAATTAAAATTCAAGAATTGCCTCGAATTAAATTTA
80060865 TTCTCTCCCAAAATTAAAATTCAAGAATTGCCTCGAATTAAATTTA
1 TTCTCTCCCAAAATTAAAATTCAAGAATTGCCTCGAATTAAATTTA
80060911 CTCTTGGGCC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (46 bp):
TTCTCTCCCAAAATTAAAATTCAAGAATTGCCTCGAATTAAATTTA
Found at i:80067599 original size:12 final size:11
Alignment explanation
Indices: 80067571--80067598 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
80067561 CACATATATA
80067571 AATTTTAAGAT
1 AATTTTAAGAT
80067582 AATTTTAAGAT
1 AATTTTAAGAT
80067593 AATTTT
1 AATTTT
80067599 TCTTATCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (11 bp):
AATTTTAAGAT
Found at i:80072598 original size:14 final size:14
Alignment explanation
Indices: 80072579--80072605 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80072569 GTTTTTAGTT
80072579 TAATTTTTGTTTTC
1 TAATTTTTGTTTTC
80072593 TAATTTTTGTTTT
1 TAATTTTTGTTTT
80072606 ATTTGCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TAATTTTTGTTTTC
Found at i:80076012 original size:9 final size:9
Alignment explanation
Indices: 80075992--80076067 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
80075982 AGCCACCCCC
80075992 TTTTATTTTA
1 TTTTA-TTTA
80076002 TTTTATTTA
1 TTTTATTTA
*
80076011 TTATTATTTG
1 TT-TTATTTA
*
80076021 TTATA-TTA
1 TTTTATTTA
80076029 -TTTATTATCA
1 TTTTATT-T-A
* *
80076039 TTTTACTAA
1 TTTTATTTA
80076048 TTTTATTCTA
1 TTTTATT-TA
80076058 -TTTATTTA
1 TTTTATTTA
80076066 TT
1 TT
80076068 ATTCTTATAC
Statistics
Matches: 51, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
7 3 0.06
8 5 0.10
9 23 0.45
10 15 0.29
11 5 0.10
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (9 bp):
TTTTATTTA
Found at i:80076029 original size:22 final size:22
Alignment explanation
Indices: 80075999--80076041 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
80075989 CCCTTTTATT
* *
80075999 TTATTTTATTTATTATTATTTG
1 TTATATTATTTATTATCATTTG
80076021 TTATATTATTTATTATCATTT
1 TTATATTATTTATTATCATTT
80076042 TACTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTATATTATTTATTATCATTTG
Found at i:80076094 original size:51 final size:49
Alignment explanation
Indices: 80075996--80076119 Score: 121
Period size: 51 Copynumber: 2.5 Consensus size: 49
80075986 ACCCCCTTTT
* *
80075996 ATTTTATTTTATTTATTATTATTTGTTATATTATTTATTATCATTTTACTA
1 ATTTTATTCTATTTATTATTATTTCTTATATTATTTATTATCATTTTA--A
*
80076047 ATTTTATTCTATTTATTTATTA-TTCTTATACTTATATT-TTAT-TTTTTAA
1 ATTTTATTCTATTTA-TTATTATTTCTTATA-TTAT-TTATTATCATTTTAA
* *
80076096 ATTTTTTTGCTATTT-CTATTATTT
1 ATTTTATT-CTATTTATTATTATTT
80076120 TTTGTATTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
48 5 0.08
49 10 0.16
50 6 0.10
51 26 0.41
52 14 0.22
53 2 0.03
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.68
Consensus pattern (49 bp):
ATTTTATTCTATTTATTATTATTTCTTATATTATTTATTATCATTTTAA
Found at i:80076218 original size:23 final size:22
Alignment explanation
Indices: 80076183--80076236 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 22
80076173 TATCATTGAG
*
80076183 TTTATTATTATTTTTTCTTTTCAT
1 TTTATT-TTATTTTTTATTTT-AT
80076207 TTTATTTTATTTTTTATTTTAT
1 TTTATTTTATTTTTTATTTTAT
80076229 TTCTATTT
1 TT-TATTT
80076237 ATCTTTGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 18 0.64
24 6 0.21
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTATTTTATTTTTTATTTTAT
Found at i:80076221 original size:12 final size:12
Alignment explanation
Indices: 80076183--80076230 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
80076173 TATCATTGAG
80076183 TTTATTATTATTT
1 TTTATT-TTATTT
*
80076196 TTTCTTTTCA--T
1 TTTATTTT-ATTT
80076207 TTTATTTTATTT
1 TTTATTTTATTT
80076219 TTTATTTTATTT
1 TTTATTTTATTT
80076231 CTATTTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
10 1 0.03
11 8 0.27
12 15 0.50
13 6 0.20
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:80079051 original size:94 final size:91
Alignment explanation
Indices: 80078935--80079146 Score: 227
Period size: 94 Copynumber: 2.3 Consensus size: 91
80078925 ACTTGTGTGA
* * * *
80078935 TCTAGTGTAAGACATGTTTGGGACATGAATT-AGCCAC-ATTATG-AGAGCTAGTGTAAAACCAT
1 TCTAGTGTAAGACATGTCTGGGACATG-ATTCAGCCACGA-GACGTA-AGCCAGTGTAAAA-CAT
*
80078997 GTCTGGGACATGACATTGGC-ATTGAGACGAG
62 GTCTGGGACATG-CATCGGCTA-TGAGACGAG
* * *
80079028 TGCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCTCGAGACGTAAGCCAGTGTAAGACATGTC
1 T-CTAGTGTAAGACATGTCTGGGACATGATTCAGCCACGAGACGTAAGCCAGTGTAAAACATGTC
* *
80079093 TGGGACATGCATCGGCTATGAGATGTG
65 TGGGACATGCATCGGCTATGAGACGAG
80079120 TC-AGTGTAAGACCATGTCTGGGACATG
1 TCTAGTGTAAGA-CATGTCTGGGACATG
80079147 GCATTGGCAC
Statistics
Matches: 103, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
90 9 0.09
91 16 0.16
92 14 0.14
93 19 0.18
94 43 0.42
95 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (91 bp):
TCTAGTGTAAGACATGTCTGGGACATGATTCAGCCACGAGACGTAAGCCAGTGTAAAACATGTCT
GGGACATGCATCGGCTATGAGACGAG
Found at i:80079086 original size:46 final size:44
Alignment explanation
Indices: 80079027--80079146 Score: 143
Period size: 46 Copynumber: 2.7 Consensus size: 44
80079017 ATTGAGACGA
* *
80079027 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCT-CGAGAC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAGAC
* * *
80079071 GTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAT
1 GT--GCCAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGAC
*
80079117 GTGTCAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG
80079147 GCATTGGCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 13 0.20
45 18 0.27
46 35 0.53
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGAC
Found at i:80086200 original size:46 final size:46
Alignment explanation
Indices: 80086046--80086215 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
80086036 TCACTTGTGT
* * * ** *
80086046 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCAAGACGA
* * **
80086092 GAGCCAGTGTAAGACCATGTCTGGGACATGGAATT-GGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-G-CTTCGGCCTCAAGACGA
* * *
80086140 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGACCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCAAGACG-A
80086187 -AGCCAGTGTAAGACATGTCTGGGACATGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGC
80086216 ATTGACTACG
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 49 0.49
47 29 0.29
48 19 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCAAGACGA
Found at i:80089755 original size:11 final size:11
Alignment explanation
Indices: 80089718--80089786 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 11
80089708 GAAATAAAAC
*
80089718 AAAACAAAAGA
1 AAAAGAAAAGA
* *
80089729 ATAAGAATAGA
1 AAAAGAAAAGA
*
80089740 GAAAGAAAAGAA
1 AAAAGAAAAG-A
80089752 AAAGAGAAAAAGA
1 AAA-AG-AAAAGA
80089765 AATAA-AGAAAGA
1 AA-AAGA-AAAGA
80089777 AAAAGAAAAG
1 AAAAGAAAAG
80089787 GGAAATTTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 12
0.70 0.11 0.19
Matches are distributed among these distances:
11 22 0.49
12 11 0.24
13 6 0.13
14 6 0.13
ACGTcount: A:0.75, C:0.01, G:0.19, T:0.04
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:80089777 original size:31 final size:31
Alignment explanation
Indices: 80089726--80089785 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
80089716 ACAAAACAAA
* *
80089726 AGAATAAGAATAGAGAAAG-AAAAGAAAAAG
1 AGAAAAAGAATAAAGAAAGAAAAAGAAAAAG
80089756 AGAAAAAGAAATAAAGAAAGAAAAAGAAAA
1 AGAAAAAG-AATAAAGAAAGAAAAAGAAAA
80089786 GGGAAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 7 0.27
31 10 0.38
32 9 0.35
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (31 bp):
AGAAAAAGAATAAAGAAAGAAAAAGAAAAAG
Found at i:80098720 original size:13 final size:13
Alignment explanation
Indices: 80098682--80098714 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
80098672 AAGGGTTTGT
80098682 TTAT-TAAACTAA
1 TTATCTAAACTAA
80098694 TTATCTAAACTAA
1 TTATCTAAACTAA
80098707 TTATCTAA
1 TTATCTAA
80098715 TTTAATCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:80106742 original size:13 final size:13
Alignment explanation
Indices: 80106720--80106752 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80106710 AAGGGTTTGT
80106720 TTAT-TAAACTAA
1 TTATCTAAACTAA
80106732 TTATCTAAACTAA
1 TTATCTAAACTAA
*
80106745 TTAACTAA
1 TTATCTAA
80106753 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:80110755 original size:13 final size:13
Alignment explanation
Indices: 80110737--80110763 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80110727 GGAGTAATCG
80110737 CACACGGGCATGT
1 CACACGGGCATGT
80110750 CACACGGGCATGT
1 CACACGGGCATGT
80110763 C
1 C
80110764 CCTACCTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:80122970 original size:39 final size:39
Alignment explanation
Indices: 80122922--80123001 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
80122912 ACATTTTAAT
80122922 CACAAAGTTTCAACATTTCTCAATTTAATCCCTATTTTG
1 CACAAAGTTTCAACATTTCTCAATTTAATCCCTATTTTG
80122961 CACAAAGTTTCAACATTTCTCAATTTAATCCCTATTTTG
1 CACAAAGTTTCAACATTTCTCAATTTAATCCCTATTTTG
80123000 CA
1 CA
80123002 TTTTCACTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (39 bp):
CACAAAGTTTCAACATTTCTCAATTTAATCCCTATTTTG
Found at i:80131311 original size:25 final size:25
Alignment explanation
Indices: 80131245--80131339 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
80131235 GCTGTAAATT
* *
80131245 GTAAGCTCTTACGAGATGAATAACG
1 GTAAGCTCATACGAGCTGAATAACG
* *
80131270 GTAAGCTCCT-CTAAGCTGAATAACG
1 GTAAGCTCATAC-GAGCTGAATAACG
*
80131295 GTAAGCTCATACGAGCTGAGTAACG
1 GTAAGCTCATACGAGCTGAATAACG
* *
80131320 ATAAGCTCATAAGAGCTGAA
1 GTAAGCTCATACGAGCTGAA
80131340 ATCTTTAACC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
24 1 0.02
25 57 0.97
26 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAATAACG
Found at i:80133377 original size:9 final size:10
Alignment explanation
Indices: 80133331--80133377 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
80133321 AACATGTTGC
*
80133331 ATTTTAATTA
1 ATTTTTATTA
80133341 ATTTTATAATTA
1 ATTTT-T-ATTA
*
80133353 ATTTTGATTA
1 ATTTTTATTA
80133363 ATTTTTATT-
1 ATTTTTATTA
80133372 ATTTTT
1 ATTTTT
80133378 GACATATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 6 0.19
10 17 0.53
12 9 0.28
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:80134378 original size:21 final size:21
Alignment explanation
Indices: 80134354--80134397 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
80134344 ATTACAATTG
80134354 TAAGGTAAATAATGAATTAAT
1 TAAGGTAAATAATGAATTAAT
80134375 TAAGGTAAATAATGAATTAAT
1 TAAGGTAAATAATGAATTAAT
80134396 TA
1 TA
80134398 TTCAAATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (21 bp):
TAAGGTAAATAATGAATTAAT
Found at i:80141662 original size:25 final size:25
Alignment explanation
Indices: 80141606--80141689 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
80141596 TATATCTCAT
* *
80141606 GTAAGCTCTTCC-AAGCTGAATAA-C
1 GTAAGCTCATCCGAA-CTGAATAATG
*
80141630 GTAAGCTCCTCCGAACTGAATAATG
1 GTAAGCTCATCCGAACTGAATAATG
* * *
80141655 GTAAGCTCATACGAGCTGAGTAATG
1 GTAAGCTCATCCGAACTGAATAATG
80141680 GTAAGCTCAT
1 GTAAGCTCAT
80141690 AAGAGCTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 19 0.37
25 33 0.63
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (25 bp):
GTAAGCTCATCCGAACTGAATAATG
Found at i:80141690 original size:25 final size:25
Alignment explanation
Indices: 80141619--80141696 Score: 95
Period size: 25 Copynumber: 3.2 Consensus size: 25
80141609 AGCTCTTCCA
* * *
80141619 AGCTGAATAA-CGTAAGCTCCTCCG
1 AGCTGAATAATGGTAAGCTCATACG
*
80141643 AACTGAATAATGGTAAGCTCATACG
1 AGCTGAATAATGGTAAGCTCATACG
* *
80141668 AGCTGAGTAATGGTAAGCTCATAAG
1 AGCTGAATAATGGTAAGCTCATACG
80141693 AGCT
1 AGCT
80141697 AAAATCGGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 9 0.20
25 37 0.80
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (25 bp):
AGCTGAATAATGGTAAGCTCATACG
Found at i:80145729 original size:34 final size:34
Alignment explanation
Indices: 80145691--80145760 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
80145681 TTATGAAAAG
80145691 TTACAAAATTGTCATTTAACTATTCAAATTTATC
1 TTACAAAATTGTCATTTAACTATTCAAATTTATC
80145725 TTACAAAATTGTCATTTAACTATTCAAATTTATC
1 TTACAAAATTGTCATTTAACTATTCAAATTTATC
80145759 TT
1 TT
80145761 TTTTTGTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (34 bp):
TTACAAAATTGTCATTTAACTATTCAAATTTATC
Found at i:80145753 original size:20 final size:20
Alignment explanation
Indices: 80145696--80145754 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
80145686 AAAAGTTACA
80145696 AAATTGTCATTTAACTATTC
1 AAATTGTCATTTAACTATTC
80145716 AAATT-T-ATCTT-AC-A---
1 AAATTGTCAT-TTAACTATTC
80145730 AAATTGTCATTTAACTATTC
1 AAATTGTCATTTAACTATTC
80145750 AAATT
1 AAATT
80145755 TATCTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 16
0.66 0.00 0.34
Matches are distributed among these distances:
14 5 0.16
15 3 0.10
16 4 0.13
17 2 0.06
18 4 0.13
19 3 0.10
20 10 0.32
ACGTcount: A:0.39, C:0.14, G:0.03, T:0.44
Consensus pattern (20 bp):
AAATTGTCATTTAACTATTC
Found at i:80145936 original size:18 final size:18
Alignment explanation
Indices: 80145915--80145949 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
80145905 AAAATATGAA
80145915 AAGTAT-TTATTATATTTT
1 AAGTATGTTA-TATATTTT
80145933 AAGTATGTTATATATTT
1 AAGTATGTTATATATTT
80145950 CTATAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (18 bp):
AAGTATGTTATATATTTT
Found at i:80147276 original size:31 final size:31
Alignment explanation
Indices: 80147241--80147310 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
80147231 AAAATATCTC
* * * *
80147241 TATTATTTTTTTATATTATTTAAAATACCCT
1 TATTAATTATTTATACTACTTAAAATACCCT
80147272 TATTAATTATTTATACTACTTAAAATA-CCT
1 TATTAATTATTTATACTACTTAAAATACCCT
80147302 CTATTAATT
1 -TATTAATT
80147311 CTTAAACACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 3 0.09
31 31 0.91
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (31 bp):
TATTAATTATTTATACTACTTAAAATACCCT
Found at i:80153586 original size:30 final size:30
Alignment explanation
Indices: 80153551--80153607 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
80153541 TGGGCATTTC
80153551 CACACGGGCTGGCCACACGCCCATGTGAGT
1 CACACGGGCTGGCCACACGCCCATGTGAGT
*
80153581 CACACGGGCTGGCCACATGCCCATGTG
1 CACACGGGCTGGCCACACGCCCATGTG
80153608 CTAGTCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.19, C:0.37, G:0.30, T:0.14
Consensus pattern (30 bp):
CACACGGGCTGGCCACACGCCCATGTGAGT
Found at i:80164517 original size:42 final size:43
Alignment explanation
Indices: 80164416--80164536 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 43
80164406 ACAATGCTAA
* * * *
80164416 TGTCCCAGACATAGTCTTACATGTAATCAAATATCGATGCCAC
1 TGTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAC
* *
80164459 TGTCCTAGACAG-GGTCTTACACGAAATCAAGTA-CGATGCCAAC
1 TGTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGCC-AC
* *
80164502 -GTCCCAGACGTGGTCTTACACGAAAACACATATCG
1 TGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
80164537 GATCCTATGT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.02
42 33 0.52
43 30 0.47
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
TGTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAC
Found at i:80169879 original size:19 final size:19
Alignment explanation
Indices: 80169855--80169892 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80169845 TAAATTTGGA
80169855 TCTAGTATGAGATACTTTT
1 TCTAGTATGAGATACTTTT
80169874 TCTAGTATGAGATACTTTT
1 TCTAGTATGAGATACTTTT
80169893 ACTTTGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
TCTAGTATGAGATACTTTT
Found at i:80176743 original size:72 final size:71
Alignment explanation
Indices: 80176620--80176766 Score: 240
Period size: 72 Copynumber: 2.1 Consensus size: 71
80176610 CACTTTTTTG
* *
80176620 CTTTAGTTATTATTGTGATTATATCTGCTAATTGGGGTAAGTAAAGTTCAAACTTTGTAATATTC
1 CTTTAGTTATTATTGTGATTATATCTGCTAATTGGGGTAAGTAAAGGTCAAACCTTGTAATATTC
* *
80176685 CGCGAC
66 CACAAC
*
80176691 CTTTATGTTATTATTGTGATTATATCTGCTACTTGGGGTAAGTAAAGGTCAAACCTTGTAATATT
1 CTTTA-GTTATTATTGTGATTATATCTGCTAATTGGGGTAAGTAAAGGTCAAACCTTGTAATATT
80176756 CCACAAC
65 CCACAAC
80176763 CTTT
1 CTTT
80176767 TTGCATTGGT
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 5 0.07
72 65 0.93
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (71 bp):
CTTTAGTTATTATTGTGATTATATCTGCTAATTGGGGTAAGTAAAGGTCAAACCTTGTAATATTC
CACAAC
Found at i:80182657 original size:21 final size:21
Alignment explanation
Indices: 80182631--80182680 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
80182621 TCAGAAGTAA
*
80182631 TAATACGACACACATGGTGCC
1 TAATACGACACACATAGTGCC
*
80182652 TAATACGACACATATAGTGCC
1 TAATACGACACACATAGTGCC
80182673 TAAT-CGAC
1 TAATACGAC
80182681 TCGAGGTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (21 bp):
TAATACGACACACATAGTGCC
Found at i:80183621 original size:16 final size:16
Alignment explanation
Indices: 80183600--80183633 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
80183590 AAATCCCTAA
*
80183600 TTTCTCTTTTCTTTCT
1 TTTCTCCTTTCTTTCT
80183616 TTTCTCCTTTCTTTCT
1 TTTCTCCTTTCTTTCT
80183632 TT
1 TT
80183634 CCTATTTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCTCCTTTCTTTCT
Found at i:80185624 original size:21 final size:21
Alignment explanation
Indices: 80185599--80185640 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80185589 TAAATTTAAC
80185599 TCAATTTAATAAAATTCACAT
1 TCAATTTAATAAAATTCACAT
* **
80185620 TCAATTTCATCCAATTCACAT
1 TCAATTTAATAAAATTCACAT
80185641 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTTAATAAAATTCACAT
Found at i:80198205 original size:26 final size:24
Alignment explanation
Indices: 80198166--80198224 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
80198156 TTATGTCATT
* *
80198166 AAATAAA-AAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
80198189 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
80198215 AAATAAATAT
1 AAATAAATAT
80198225 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 7 0.23
26 14 0.45
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:80198236 original size:22 final size:22
Alignment explanation
Indices: 80198195--80198253 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
80198185 ATAATAAATC
* *
80198195 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
80198215 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
80198237 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
80198254 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:80198330 original size:15 final size:16
Alignment explanation
Indices: 80198300--80198332 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80198290 AAATGGTTAT
80198300 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
80198317 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
80198332 A
1 A
80198333 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:80201000 original size:21 final size:21
Alignment explanation
Indices: 80200975--80201027 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
80200965 AGCGGTGGCA
*
80200975 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGATACTGTAGCG
*
80200996 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTGTAGCG
80201017 GTGAGATTAGA
1 GTGAGATTAGA
80201028 AACAGCGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.08, G:0.36, T:0.30
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCG
Found at i:80203744 original size:15 final size:15
Alignment explanation
Indices: 80203698--80203749 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 15
80203688 GGAAAAATAA
*
80203698 AAAATATTATTTGTT
1 AAAATATTATATGTT
* * *
80203713 -AAATGTTTTA-ATT
1 AAAATATTATATGTT
80203726 AAAATATTATATGTT
1 AAAATATTATATGTT
80203741 AAAATATTA
1 AAAATATTA
80203750 ATAAATGAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
13 2 0.07
14 15 0.54
15 11 0.39
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (15 bp):
AAAATATTATATGTT
Found at i:80213459 original size:161 final size:158
Alignment explanation
Indices: 80213194--80213505 Score: 459
Period size: 161 Copynumber: 2.0 Consensus size: 158
80213184 AAACCAAAGC
* *
80213194 TTTCTTTTAAAAAAAATACAATTTTTCTTAAAGATCAAAGCTTTATTTTGAAATAGTTGAAAAAG
1 TTTCTTTTAAAAAAAATACAACTTTTCTTAAAGATCAAAGCTTTATTTCGAAATAGTTGAAAAAG
* *
80213259 ATCGAAACTTTGTTTTAAAATTTTAAACTTTTCCTTTAAAATGACTAAAAAAAATAGATTTTTAT
66 ATCAAAACTTTATTTTAAAATTTTAAACTTTTCCTTTAAAATGACTAAAAAAAAT--ATTTTTAT
* *
80213324 TCTTAAAAATCTAAATTTTCTCTTCTTTTTT
129 T-TTAAAAATCTAAACTTCCTCTTCTTTTTT
* *
80213355 TTTCTTTT-AAAAAACTCACTACTTTTCTTAAAGATCAAAGCTTTTATTTCGAAATAGTTG-AAA
1 TTTCTTTTAAAAAAAAT-ACAACTTTTCTTAAAGATCAAAGC-TTTATTTCGAAATAGTTGAAAA
*
80213418 AGAATCAAAACTTTATTTTAAAATTTTAAAC-TTTCCTTTAAAATGACTAAAAAACATATTTTTA
64 AG-ATCAAAACTTTATTTTAAAATTTTAAACTTTTCCTTTAAAATGACTAAAAAAAATATTTTTA
*
80213482 TTTTTAAAATCTAAACTTCCTCTT
128 TTTTAAAAATCTAAACTTCCTCTT
80213506 TTAAAAAAAA
Statistics
Matches: 138, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
158 19 0.14
159 9 0.07
160 7 0.05
161 60 0.43
162 43 0.31
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (158 bp):
TTTCTTTTAAAAAAAATACAACTTTTCTTAAAGATCAAAGCTTTATTTCGAAATAGTTGAAAAAG
ATCAAAACTTTATTTTAAAATTTTAAACTTTTCCTTTAAAATGACTAAAAAAAATATTTTTATTT
TAAAAATCTAAACTTCCTCTTCTTTTTT
Found at i:80216127 original size:354 final size:354
Alignment explanation
Indices: 80215478--80216188 Score: 1332
Period size: 354 Copynumber: 2.0 Consensus size: 354
80215468 CAGGACTAAC
*
80215478 CAGGTTCGAAGTTGGAAAACATTGAAAAAGAGTAGTCCAAATTTGGACTATTTCTTCAAATTTTC
1 CAGGTTCGAAGTTGGAAAACATTGAAAAAAAGTAGTCCAAATTTGGACTATTTCTTCAAATTTTC
* *
80215543 TGTCAGAGATAACGGCTAAGCAGGAAGACGTGATAGCACATCAATGATAGAACCCGGACGAATTA
66 TGTCAGAGATAACGACTAAGCAGGAAGACGTGATAGCACATCAATGATAGAACCCGAACGAATTA
*
80215608 TGGGCAATGACACCTTAAGCATTTAAAAAGGAATCACTCTCATAACATTTCTACATTCATAATCA
131 TGGGCAATGACACCTTAAACATTTAAAAAGGAATCACTCTCATAACATTTCTACATTCATAATCA
*
80215673 TTCATCTAGTTAGGGATATTTGATTCATCTCGATCATAGCATCCTAGTTATTTGATATACGCAGA
196 TTCATCTAGTTAGGGACATTTGATTCATCTCGATCATAGCATCCTAGTTATTTGATATACGCAGA
80215738 TATAGGAAACCCATTCTACACATCATGTCTTTAGAAGACAGCGTAGCGACATTGCCAAATCCAGC
261 TATAGGAAACCCATTCTACACATCATGTCTTTAGAAGACAGCGTAGCGACATTGCCAAATCCAGC
80215803 AGATTTGGCATCTCTGTATTGGCGGAGAG
326 AGATTTGGCATCTCTGTATTGGCGGAGAG
80215832 CAGGTTCGAAGTTGGAAAACATTGAAAAAAAGTAGTCCAAATTTGGACTATTTCTTCAAATTTTC
1 CAGGTTCGAAGTTGGAAAACATTGAAAAAAAGTAGTCCAAATTTGGACTATTTCTTCAAATTTTC
*
80215897 TGTCAGAGATAACGACTAAGTAGGAAGACGTGATAGCACATCAATGATAGAACCCGAACGAATTA
66 TGTCAGAGATAACGACTAAGCAGGAAGACGTGATAGCACATCAATGATAGAACCCGAACGAATTA
80215962 TGGGCAATGACACCTTAAACATTTAAAAAGGAATCACTCTCATAACATTTCTACATTCATAATCA
131 TGGGCAATGACACCTTAAACATTTAAAAAGGAATCACTCTCATAACATTTCTACATTCATAATCA
*
80216027 TTCATCTAGTTAGGGACATTTGATTGATCTCGATCATAGCATCCTAGTTATTTGATATACGCAGA
196 TTCATCTAGTTAGGGACATTTGATTCATCTCGATCATAGCATCCTAGTTATTTGATATACGCAGA
***
80216092 TATAGGAAACCCATTCTACACATCATGTCTTTAGAAGACAGCGTAGCGACATTGGTGAATCCAGC
261 TATAGGAAACCCATTCTACACATCATGTCTTTAGAAGACAGCGTAGCGACATTGCCAAATCCAGC
80216157 AGATTTGGCATCTCTGTATTGGCGGAGAG
326 AGATTTGGCATCTCTGTATTGGCGGAGAG
80216186 CAG
1 CAG
80216189 ATCGAAGATA
Statistics
Matches: 347, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
354 347 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (354 bp):
CAGGTTCGAAGTTGGAAAACATTGAAAAAAAGTAGTCCAAATTTGGACTATTTCTTCAAATTTTC
TGTCAGAGATAACGACTAAGCAGGAAGACGTGATAGCACATCAATGATAGAACCCGAACGAATTA
TGGGCAATGACACCTTAAACATTTAAAAAGGAATCACTCTCATAACATTTCTACATTCATAATCA
TTCATCTAGTTAGGGACATTTGATTCATCTCGATCATAGCATCCTAGTTATTTGATATACGCAGA
TATAGGAAACCCATTCTACACATCATGTCTTTAGAAGACAGCGTAGCGACATTGCCAAATCCAGC
AGATTTGGCATCTCTGTATTGGCGGAGAG
Found at i:80216241 original size:44 final size:44
Alignment explanation
Indices: 80216154--80217085 Score: 1210
Period size: 44 Copynumber: 21.2 Consensus size: 44
80216144 TGGTGAATCC
* *
80216154 AGCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * * * *
80216198 AGTAGATTTGGCATCTCTGGATTGTCAGA-AGGCATATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGA-GCAGATCAAAGAT
* **
80216242 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAAATTGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* *
80216286 AGTAGATTTGGCGTCTCTGTATTGGTGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
*
80216330 AGCAGATTTGGCATCTCTGTATTGGCAGG-GAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGC-GGAGAGCAGATCAAAGAT
* * * * *
80216374 AGCAGATTTGGCATCTCTGTATTGTCAGAGGGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * *
80216418 AGCAGATTTGGCGTCTCTATATTAGCGGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* *
80216462 AGCAAATTTGGCATCTCTGTATTGGCAGG-GAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGC-GGAGAGCAGATCAAAGAT
* * * * * *
80216506 AGCAGATTTGGCGTATCTATATTGTCAGAGGGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
80216550 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * *
80216594 AGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
80216638 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
*
80216682 AGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * *
80216726 AGCAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * *
80216770 AGCAAATTTGGCGTATCTGTATTGGCGGAGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * *
80216814 AGCAGATTTGGCATCTCTGTATTGGTGGAGAGTAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * *
80216858 AACACATTTGGCGTCTCTGTATTGTCAGG-GGGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGC-GGAGAGCAGATCAAAGAT
80216902 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * *
80216946 AGCAGATTTGGCGTCTCTGTGTTGGCGGAGAGTAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* * * * * *
80216990 AGCAGATTTGACATCTCTGTGTTGACAGAGAGCAGATCAAGGAT
1 AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
* *
80217034 -GACAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAA-AT
1 AG-CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATC-AAAGAT
*
80217078 AACAGATT
1 AGCAGATT
80217086 GGTGCTCCCG
Statistics
Matches: 777, Mismatches: 100, Indels: 22
0.86 0.11 0.02
Matches are distributed among these distances:
43 6 0.01
44 762 0.98
45 9 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (44 bp):
AGCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGAT
Found at i:80218658 original size:47 final size:44
Alignment explanation
Indices: 80218551--80218641 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
80218541 TATTTCATTC
*
80218551 TTTAGGAAACTATTTTATTATTTATTTATTCAAAGCTTGTTTTT
1 TTTAGGAAACTATTTTATTATTCATTTATTCAAAGCTTGTTTTT
80218595 TTTAGGAAACTATTTTATTATTCATTTATTCAAAGCTTGTTTTT
1 TTTAGGAAACTATTTTATTATTCATTTATTCAAAGCTTGTTTTT
80218639 TTT
1 TTT
80218642 TTATATTATG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.26, C:0.08, G:0.09, T:0.57
Consensus pattern (44 bp):
TTTAGGAAACTATTTTATTATTCATTTATTCAAAGCTTGTTTTT
Found at i:80219069 original size:25 final size:26
Alignment explanation
Indices: 80219017--80219076 Score: 95
Period size: 25 Copynumber: 2.3 Consensus size: 26
80219007 GTTATTCACC
* *
80219017 TTTAAATTTCTTTTGTATTTATTTAT
1 TTTAAGTTTCTTTAGTATTTATTTAT
80219043 TTTAAGTTTCTTTAGTA-TTATTTAT
1 TTTAAGTTTCTTTAGTATTTATTTAT
80219068 TTTAAGTTT
1 TTTAAGTTT
80219077 TTATACATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 17 0.53
26 15 0.47
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (26 bp):
TTTAAGTTTCTTTAGTATTTATTTAT
Found at i:80219189 original size:22 final size:22
Alignment explanation
Indices: 80219163--80219207 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
80219153 TATTTTTATG
*
80219163 TATTATTCATTTTAAATTGTTT
1 TATTATTCACTTTAAATTGTTT
* *
80219185 TATTATTTACTTTAAATTTTTT
1 TATTATTCACTTTAAATTGTTT
80219207 T
1 T
80219208 TCTCTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (22 bp):
TATTATTCACTTTAAATTGTTT
Found at i:80239877 original size:14 final size:13
Alignment explanation
Indices: 80239843--80239883 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
80239833 AAATATTAAC
80239843 TTTT-AAATCATT
1 TTTTAAAATCATT
*
80239855 TTTTAAAATAATT
1 TTTTAAAATCATT
80239868 TTTTAGAAATCATT
1 TTTTA-AAATCATT
80239882 TT
1 TT
80239884 CAGTCACACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 4 0.16
13 12 0.48
14 9 0.36
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (13 bp):
TTTTAAAATCATT
Found at i:80240824 original size:24 final size:24
Alignment explanation
Indices: 80240797--80240842 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
80240787 AGGAAGTAAG
80240797 CCATATCTCCAAGACCAAACATAT
1 CCATATCTCCAAGACCAAACATAT
80240821 CCATATCTCCAAGACCAAACAT
1 CCATATCTCCAAGACCAAACAT
80240843 TTCAAATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.35, G:0.04, T:0.20
Consensus pattern (24 bp):
CCATATCTCCAAGACCAAACATAT
Found at i:80244973 original size:25 final size:25
Alignment explanation
Indices: 80244945--80244995 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
80244935 ATGATTATGG
80244945 TTCGATAAATCTTGAGGCATTGGTA
1 TTCGATAAATCTTGAGGCATTGGTA
80244970 TTCGATAAATCTTGAGGCATTGGTA
1 TTCGATAAATCTTGAGGCATTGGTA
80244995 T
1 T
80244996 AGGTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (25 bp):
TTCGATAAATCTTGAGGCATTGGTA
Found at i:80246906 original size:46 final size:46
Alignment explanation
Indices: 80246716--80247026 Score: 204
Period size: 46 Copynumber: 6.6 Consensus size: 46
80246706 GTATAATGCT
* * * * *
80246716 GATGCCATGTCCCAGATATGGTCTTACATTGGCTCATC-CATC-AAGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCATATCGAGGCC
* * * *
80246763 GATGCCATGTCCCAAACATGGTCTTACGCTAGCTCTCACATATCTG-TGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT--CATATC-GAGGCC
* * * *
80246813 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGAAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATCGAGGCC
*
80246859 GATGCATGTCCCAGACATGTCTTATACTGGCT-TACATATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATATCGAGGCC
* * * * * * * *
80246905 GATACATGTCCCAGACATGTCTTATACTAGCTCTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCC
* * *
80246951 GATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATCGAGGCC
**
80246999 GATAAATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
80247027 AGTACACAAA
Statistics
Matches: 213, Mismatches: 38, Indels: 27
0.77 0.14 0.10
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 72 0.34
47 58 0.27
48 23 0.11
49 5 0.02
50 30 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGAGGCC
Found at i:80247008 original size:94 final size:93
Alignment explanation
Indices: 80246762--80247034 Score: 288
Period size: 94 Copynumber: 2.9 Consensus size: 93
80246752 TCCATCAAGT
* * * * *
80246762 CGATGCCATGTCCCAAACATGGTCTTACGCTAGCTCTCACATATCTGTGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATA-ATGTG-GCCGAT-ACATGTCCCA
80246827 GACATGGTCTTACACT-GACACATCTCGAAGC
63 GACAT-GTCTTACACTAGACACATCTCGAAGC
** *
80246858 CGATG-CATGTCCCAGACAT-GTCTTATACTGGCT-TACAT-ATCGAGGCCGATACATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCT-CATAAT-GTGGCCGATACATGTCCCAG
* * * *
80246919 ACATGTCTTATACTAGCTCTCGTCTC-AATGC
64 ACATGTCTTACACTAG-ACACATCTCGAA-GC
* * *
80246950 TGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAATGTGGCTGATAAATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAATGTGGCCGATACATGTCCCAGAC
80247015 ATGTCTTACACTAGTACACA
66 ATGTCTTACACTAG-ACACA
80247035 AATAACCCGA
Statistics
Matches: 145, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
90 9 0.06
91 17 0.12
92 20 0.14
93 16 0.11
94 62 0.43
95 16 0.11
96 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAATGTGGCCGATACATGTCCCAGAC
ATGTCTTACACTAGACACATCTCGAAGC
Found at i:80247756 original size:13 final size:13
Alignment explanation
Indices: 80247738--80247762 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80247728 CTAAAAGTAC
80247738 AAAAATCATCAAG
1 AAAAATCATCAAG
80247751 AAAAATCATCAA
1 AAAAATCATCAA
80247763 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:80250820 original size:26 final size:25
Alignment explanation
Indices: 80250786--80250847 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 25
80250776 TAGCTCTTAA
*
80250786 GAGCGTCCCGATATATGGCTCTTCGC
1 GAGCTTCCCGATATA-GGCTCTTCGC
* *
80250812 GAGCTTCCC-A-ATAGGCTCTTTGT
1 GAGCTTCCCGATATAGGCTCTTCGC
80250835 GAGCTTCCCGATA
1 GAGCTTCCCGATA
80250848 GTGCTCGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 17 0.55
24 4 0.13
25 2 0.06
26 8 0.26
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (25 bp):
GAGCTTCCCGATATAGGCTCTTCGC
Done.