Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 252 of 318
Found at i:80250838 original size:23 final size:23
Alignment explanation
Indices: 80250802--80250853 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
80250792 CCCGATATAT
80250802 GGCTCTTCGCGAGCTTCCCAATA
1 GGCTCTTCGCGAGCTTCCCAATA
* * *
80250825 GGCTCTTTGTGAGCTTCCCGATA
1 GGCTCTTCGCGAGCTTCCCAATA
80250848 GTGCTC
1 G-GCTC
80250854 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.13, C:0.31, G:0.25, T:0.31
Consensus pattern (23 bp):
GGCTCTTCGCGAGCTTCCCAATA
Found at i:80251383 original size:46 final size:46
Alignment explanation
Indices: 80251312--80251582 Score: 364
Period size: 46 Copynumber: 5.9 Consensus size: 46
80251302 CTCTGAAATC
* * * * *
80251312 AAATGTGTAAGACCATAGTTGAAAGATACCATGACAACCTGATATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
* * * * *
80251358 AAATGTGTAAGACCATGGTTAAAAGATATCATGGCAACCTGATATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
*
80251404 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
* *
80251450 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
*
80251496 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-G
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
* * * *
80251541 AAAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 -AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
80251583 TCGAAGATAA
Statistics
Matches: 207, Mismatches: 17, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 206 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG
Found at i:80252515 original size:14 final size:14
Alignment explanation
Indices: 80252496--80252525 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80252486 TTATATCGAG
80252496 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
80252510 ACCAATCCAATTCA
1 ACCAATCCAAATCA
80252524 AC
1 AC
80252526 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:80259132 original size:14 final size:14
Alignment explanation
Indices: 80259113--80259142 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80259103 TTATATCGAG
80259113 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
80259127 ACCAATCCAATTCA
1 ACCAATCCAAATCA
80259141 AC
1 AC
80259143 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:80272868 original size:47 final size:49
Alignment explanation
Indices: 80272796--80272926 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 49
80272786 GTATAATACC
* * *
80272796 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AATC-AAGTT
1 GATGCCATATCCCAAACATGGTCTTACACTGGCTCATCAAATCGAAGCT
* * * *
80272843 GATGCCATATACCAAACATGTTCTTACACTGACT-ATCGAAATCGAGGCT
1 GATGCCATATCCCAAACATGGTCTTACACTGGCTCATC-AAATCGAAGCT
* * *
80272892 GACGTCATATCCCAAACATGGTCTTACACTAGCTC
1 GATGCCATATCCCAAACATGGTCTTACACTGGCTC
80272927 TCACATATTT
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
46 3 0.04
47 29 0.43
48 4 0.06
49 31 0.46
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
GATGCCATATCCCAAACATGGTCTTACACTGGCTCATCAAATCGAAGCT
Found at i:80273152 original size:46 final size:46
Alignment explanation
Indices: 80272901--80273155 Score: 185
Period size: 46 Copynumber: 5.5 Consensus size: 46
80272891 TGACGTCATA
* * * *
80272901 TCCCAAACATGGTCTTACACTAGCTCTCACATATTTGT-GTCGATACCATG
1 TCCCAGACAT-GTCTTACACTAGCTCT--CATA-ATGTAGCCGAT-GCATG
*
80272951 TCCCAGACATGGTCTTACACTA-C-ATC-T--TGTAGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTAGCTCTCATAATGTAGCCGATGCATG
*
80272993 TCCCAGACATGTCTTACACT-GACT-TACAT-CTCG-AGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAG-CTCT-CATAAT-GTA-GCCGATGCATG
* * *
80273039 TCCCAGACATGTCTTATACTAGCTCTCGTCTCAATGTA---GATACCATG
1 TCCCAGACATGTCTTACACTAGCTCTC--AT-AATGTAGCCGAT-GCATG
80273086 TCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTAGCTCTCATAATGTAGCCGATGCATG
* *
80273133 TCCCGGACTTGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
80273156 ACACAAATAA
Statistics
Matches: 171, Mismatches: 13, Indels: 46
0.74 0.06 0.20
Matches are distributed among these distances:
41 10 0.06
42 19 0.11
43 6 0.04
44 1 0.01
45 9 0.05
46 52 0.30
47 28 0.16
48 21 0.12
49 2 0.01
50 23 0.13
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAGCTCTCATAATGTAGCCGATGCATG
Found at i:80278576 original size:32 final size:32
Alignment explanation
Indices: 80278540--80278604 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
80278530 AGTACAAAAG
*
80278540 AATGGTTCACATATGCATTTCATTAAAACATT
1 AATGGTTCACATATGCATTTCATCAAAACATT
80278572 AATGGTTCACATATGCATTTCATCAAAACATT
1 AATGGTTCACATATGCATTTCATCAAAACATT
80278604 A
1 A
80278605 CATCTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.35
Consensus pattern (32 bp):
AATGGTTCACATATGCATTTCATCAAAACATT
Found at i:80283779 original size:43 final size:42
Alignment explanation
Indices: 80283713--80283823 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
80283703 AGCTCGTACA
* * *
80283713 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAAACGGAATCAAATA-CG
80283756 ATGCC-ACAGTCCCAGACAG-GGTCTTAAACGGAATCAAATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTAAACGGAATCAAATACG
* * * * *
80283798 ATGTCGATGTCCCAGACATCGTCTTA
1 ATGCCAACGTCCCAGACGTGGTCTTA
80283824 CACATAAATC
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
42 23 0.40
43 33 0.58
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTAAACGGAATCAAATACG
Found at i:80283815 original size:42 final size:44
Alignment explanation
Indices: 80283713--80283800 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 44
80283703 AGCTCGTACA
* * *
80283713 ATGCCA-ACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCACA-GTCCCAGACAGTGGTCTTAAACGGAATCAAATATCG
80283756 ATGCCACAGTCCCAGACAG-GGTCTTAAACGGAATCAAATA-CG
1 ATGCCACAGTCCCAGACAGTGGTCTTAAACGGAATCAAATATCG
80283798 ATG
1 ATG
80283801 TCGATGTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
42 5 0.12
43 33 0.82
44 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (44 bp):
ATGCCACAGTCCCAGACAGTGGTCTTAAACGGAATCAAATATCG
Found at i:80291292 original size:27 final size:26
Alignment explanation
Indices: 80291255--80291365 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
80291245 AGCATGGCTG
* *
80291255 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
80291281 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
80291309 CCAGAACAGATATATGTGGCAGGGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
80291336 CCAGATCCGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
80291363 CCA
1 CCA
80291366 AAACGCTTCC
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.07
27 52 0.70
28 17 0.23
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:80291314 original size:54 final size:54
Alignment explanation
Indices: 80291255--80291365 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 54
80291245 AGCATGGCTG
*
80291255 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * * *
80291309 CCAGAACAGATATATGTGGCAGGGCCACCAGATCCGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80291363 CCA
1 CCA
80291366 AAACGCTTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80293019 original size:26 final size:26
Alignment explanation
Indices: 80292983--80293092 Score: 170
Period size: 26 Copynumber: 4.2 Consensus size: 26
80292973 CATGAAATTC
80292983 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80293009 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
80293035 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
*
80293061 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
80293087 TTATCA
1 TTATCA
80293093 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
25 1 0.01
26 78 0.98
27 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80294550 original size:43 final size:42
Alignment explanation
Indices: 80294493--80294601 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
80294483 AATGCCAACG
* * *
80294493 TCCCAGACATGGTCTTACATGTAATGAAATATCGATGCC-ACTG
1 TCCCAGACAGGGTCTTACATGTAATCAAATA-CGATGCCGA-TA
** *
80294536 TCCCAGTTAGGGTCTTACATGAAATCAAATACGATGCCGATA
1 TCCCAGACAGGGTCTTACATGTAATCAAATACGATGCCGATA
*
80294578 TCCCAGACATGGTCTTACATGTAA
1 TCCCAGACAGGGTCTTACATGTAA
80294602 ATCTCAAATC
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.51
43 27 0.49
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACATGTAATCAAATACGATGCCGATA
Found at i:80304195 original size:30 final size:30
Alignment explanation
Indices: 80304161--80304221 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80304151 TTCCCGAGCC
*
80304161 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
80304191 TAGGGGAAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
80304221 T
1 T
80304222 TGAGTTAAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:80306910 original size:21 final size:21
Alignment explanation
Indices: 80306884--80306928 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
80306874 AATTGACTCG
80306884 ATTTATTCGATATGGAATTAA
1 ATTTATTCGATATGGAATTAA
80306905 ATTTATTCGATATGGAATTAA
1 ATTTATTCGATATGGAATTAA
80306926 ATT
1 ATT
80306929 AGGTGGTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (21 bp):
ATTTATTCGATATGGAATTAA
Found at i:80307566 original size:31 final size:30
Alignment explanation
Indices: 80307528--80307599 Score: 117
Period size: 31 Copynumber: 2.4 Consensus size: 30
80307518 TGTTTTAATA
*
80307528 AATTTAATATTTATCTAGATAGTATTTTATT
1 AATTTAATATTTATCTAGATAATATTTT-TT
*
80307559 AATTTAATATTTATTTAGATAATATTTTTT
1 AATTTAATATTTATCTAGATAATATTTTTT
80307589 AATTTAATATT
1 AATTTAATATT
80307600 AATGTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 13 0.33
31 26 0.67
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (30 bp):
AATTTAATATTTATCTAGATAATATTTTTT
Found at i:80307571 original size:15 final size:15
Alignment explanation
Indices: 80307553--80307599 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
80307543 TAGATAGTAT
80307553 TTTATTAATTTAATA
1 TTTATTAATTTAATA
* **
80307568 TTTATTTAGATAATA
1 TTTATTAATTTAATA
*
80307583 TTTTTTAATTTAATA
1 TTTATTAATTTAATA
80307598 TT
1 TT
80307600 AATGTGATTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
TTTATTAATTTAATA
Found at i:80307596 original size:35 final size:34
Alignment explanation
Indices: 80307509--80307602 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 34
80307499 ACTTTTCTAA
*
80307509 AGATAATATTGTTTTAATAAATTTAATATTTATCT
1 AGATAATATT-TTTTAATTAATTTAATATTTATCT
* *
80307544 AGATAGTA--TTTT-ATTAATTTAATATTTATTT
1 AGATAATATTTTTTAATTAATTTAATATTTATCT
80307575 AGATAATATTTTTTAATTTAATATTAAT
1 AGATAATATTTTTTAA-TTAAT-TTAAT
80307603 GTGATTAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
31 24 0.48
32 4 0.08
33 4 0.08
34 1 0.02
35 12 0.24
36 5 0.10
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (34 bp):
AGATAATATTTTTTAATTAATTTAATATTTATCT
Found at i:80316565 original size:2 final size:2
Alignment explanation
Indices: 80316558--80316590 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
80316548 GGGAATACTA
80316558 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
80316591 AGCAGTAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:80317328 original size:26 final size:26
Alignment explanation
Indices: 80317299--80317348 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
80317289 TTAACATCAG
* *
80317299 AAACTCGAATCTTAAATCCTAAACTT
1 AAACTCGAAACTCAAATCCTAAACTT
**
80317325 AAACTTTAAACTCAAATCCTAAAC
1 AAACTCGAAACTCAAATCCTAAAC
80317349 ACCAAGAGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (26 bp):
AAACTCGAAACTCAAATCCTAAACTT
Found at i:80317502 original size:22 final size:24
Alignment explanation
Indices: 80317463--80317516 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
80317453 ACAAAATTAC
*
80317463 AAAAATTATATATTAATAAT-ATAA
1 AAAAATTATATATAAAT-ATCATAA
*
80317487 AAAAATTAT-TA-AAATATCATTA
1 AAAAATTATATATAAATATCATAA
80317509 AAAAATTA
1 AAAAATTA
80317517 AAAAATTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 14 0.52
23 2 0.07
24 9 0.33
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAAATTATATATAAATATCATAA
Found at i:80325330 original size:22 final size:22
Alignment explanation
Indices: 80325305--80325349 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
80325295 TATATTAAGT
80325305 ATACCTTAGTTTCAGTTAGTTA
1 ATACCTTAGTTTCAGTTAGTTA
80325327 ATACCTTAGTTTCAGTTAGTTA
1 ATACCTTAGTTTCAGTTAGTTA
80325349 A
1 A
80325350 GTTTCTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (22 bp):
ATACCTTAGTTTCAGTTAGTTA
Found at i:80325587 original size:54 final size:54
Alignment explanation
Indices: 80325501--80325751 Score: 220
Period size: 54 Copynumber: 4.6 Consensus size: 54
80325491 TGGATTCACG
** ** * * * **
80325501 GATTTACGATCGCAACCTCCCA-TATACAAGATTTTCAAAATTTTATGGTTCATT
1 GATTTACGATCGCAACCTCTTACT-TATGAGATTTTCAAAATATCATGATTTGTT
** * *
80325555 GATTTACGATCGTGACCTCTTACTTATGAGATTTTCAGAATATCATGATTTGTC
1 GATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAATATCATGATTTGTT
* * * *
80325609 GATTTACGATGGCAAACT-TCTACTTATGAGATTTTCAGAATCTCACT-ATTTGTT
1 GATTTACGATCGCAACCTCT-TACTTATGAGATTTTCAAAATATCA-TGATTTGTT
* * * ** *
80325663 GATTTATGATCGCAACCTCTTACTTATGAGATTTTTAAAATCTCGCGATTTGTC
1 GATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAATATCATGATTTGTT
* * *
80325717 GATTTACGATTGCAACCTCCTACTTATAAGATTTT
1 GATTTACGATCGCAACCTCTTACTTATGAGATTTT
80325752 TAGAATCTTA
Statistics
Matches: 161, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
53 1 0.01
54 157 0.98
55 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (54 bp):
GATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAATATCATGATTTGTT
Found at i:80325690 original size:108 final size:108
Alignment explanation
Indices: 80325552--80325811 Score: 306
Period size: 108 Copynumber: 2.4 Consensus size: 108
80325542 TTTATGGTTC
** * *
80325552 ATTGATTTACGATCGTGACCTCTTACTTATGAGATTTTCAGAATATCATGATTTGTCGATTTACG
1 ATTGATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAATATCACGATTTGTCGATTTACG
* *
80325617 ATGGCAAACTTCTACTTATGAGATTTTCAGAATCTCACTA-TTT
66 ATGGCAAACTCCTACTTATAAGATTTTCAGAATCTCAC-AGTTT
* * * * *
80325660 GTTGATTTATGATCGCAACCTCTTACTTATGAGATTTTTAAAATCTCGCGATTTGTCGATTTACG
1 ATTGATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAATATCACGATTTGTCGATTTACG
* * * *
80325725 ATTGCAACCTCCTACTTATAAGATTTTTAGAATCTTACAGTTT
66 ATGGCAAACTCCTACTTATAAGATTTTCAGAATCTCACAGTTT
** * * * **
80325768 ATCAATTTAGGATCGCAACCTCTCATTTACAAGATTTTCAAAAT
1 ATTGATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAAT
80325812 CTTGTGGTTT
Statistics
Matches: 127, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
107 1 0.01
108 126 0.99
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (108 bp):
ATTGATTTACGATCGCAACCTCTTACTTATGAGATTTTCAAAATATCACGATTTGTCGATTTACG
ATGGCAAACTCCTACTTATAAGATTTTCAGAATCTCACAGTTT
Found at i:80325752 original size:54 final size:54
Alignment explanation
Indices: 80325555--80325789 Score: 256
Period size: 54 Copynumber: 4.4 Consensus size: 54
80325545 ATGGTTCATT
** * * *
80325555 GATTTACGATCGTGACCTCTTACTTATGAGATTTTCAGAATATCATGATTTGTC
1 GATTTACGATCGCAACCTCCTACTTATGAGATTTTCAGAATCTCACGATTTGTC
* * * * *
80325609 GATTTACGATGGCAAACTTCTACTTATGAGATTTTCAGAATCTCACTATTTGTT
1 GATTTACGATCGCAACCTCCTACTTATGAGATTTTCAGAATCTCACGATTTGTC
* * * * *
80325663 GATTTATGATCGCAACCTCTTACTTATGAGATTTTTAAAATCTCGCGATTTGTC
1 GATTTACGATCGCAACCTCCTACTTATGAGATTTTCAGAATCTCACGATTTGTC
* * * * *
80325717 GATTTACGATTGCAACCTCCTACTTATAAGATTTTTAGAATCTTAC-AGTTTATC
1 GATTTACGATCGCAACCTCCTACTTATGAGATTTTCAGAATCTCACGA-TTTGTC
* *
80325771 AATTTAGGATCGCAACCTC
1 GATTTACGATCGCAACCTC
80325790 TCATTTACAA
Statistics
Matches: 149, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
53 1 0.01
54 148 0.99
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (54 bp):
GATTTACGATCGCAACCTCCTACTTATGAGATTTTCAGAATCTCACGATTTGTC
Found at i:80325802 original size:54 final size:54
Alignment explanation
Indices: 80325502--80325814 Score: 175
Period size: 54 Copynumber: 5.8 Consensus size: 54
80325492 GGATTCACGG
* * * * * * * **
80325502 ATTTACGATCGCAACCTCCCA-TATACAAGATTTTCAAAATTTTATGGTTCATTG
1 ATTTACGATCGCAACCTCTCACT-TATAAGATTTTTAAAATCTTACGATTTATCA
** * * * * * * * * *
80325556 ATTTACGATCGTGACCTCTTACTTATGAGATTTTCAGAATATCATGATTTGTCG
1 ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTTACGATTTATCA
* * * * * * * * **
80325610 ATTTACGATGGCAAACT-TCTACTTATGAGATTTTCAGAATCTCACTATTTGTTG
1 ATTTACGATCGCAACCTCTC-ACTTATAAGATTTTTAAAATCTTACGATTTATCA
* * * ** * *
80325664 ATTTATGATCGCAACCTCTTACTTATGAGATTTTTAAAATCTCGCGATTTGTCG
1 ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTTACGATTTATCA
* *
80325718 ATTTACGATTGCAACCTC-CTACTTATAAGATTTTTAGAATCTTAC-AGTTTATCA
1 ATTTACGATCGCAACCTCTC-ACTTATAAGATTTTTAAAATCTTACGA-TTTATCA
* * * *
80325772 ATTTAGGATCGCAACCTCTCATTTACAAGATTTTCAAAATCTT
1 ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTT
80325815 GTGGTTTATC
Statistics
Matches: 207, Mismatches: 46, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
53 2 0.01
54 202 0.98
55 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.40
Consensus pattern (54 bp):
ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTTACGATTTATCA
Found at i:80325822 original size:54 final size:54
Alignment explanation
Indices: 80325664--80325868 Score: 164
Period size: 54 Copynumber: 3.8 Consensus size: 54
80325654 CTATTTGTTG
* * * * * * *
80325664 ATTTATGATCGCAACCTCTTACTTATGAGATTTTTAAAATCTCGCGATTTGTCG
1 ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTTGCGGTTTATCA
* * * *
80325718 ATTTACGATTGCAACCTC-CTACTTATAAGATTTTTAGAATCTTACAGTTTATCA
1 ATTTACGATCGCAACCTCTC-ACTTATAAGATTTTTAAAATCTTGCGGTTTATCA
* * * * * *
80325772 ATTTAGGATCGCAACCTCTCATTTACAAGATTTTCAAAATCTTGTGGTTTATCG
1 ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTTGCGGTTTATCA
* * * * * *
80325826 ATATGCAATCGCAACCTAC-CGCTTACAAGA-TTTTAGAATCTTG
1 ATTTACGATCGCAACCT-CTCACTTATAAGATTTTTAAAATCTTG
80325869 TTGATGCCAA
Statistics
Matches: 119, Mismatches: 29, Indels: 7
0.77 0.19 0.05
Matches are distributed among these distances:
53 11 0.09
54 106 0.89
55 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (54 bp):
ATTTACGATCGCAACCTCTCACTTATAAGATTTTTAAAATCTTGCGGTTTATCA
Found at i:80325827 original size:108 final size:108
Alignment explanation
Indices: 80325569--80325867 Score: 262
Period size: 108 Copynumber: 2.8 Consensus size: 108
80325559 TACGATCGTG
* ** * * ** * * * *
80325569 ACCTCTTACTTATGAGATTTTCAGAATATCATGATTTGTCGATTTACGATGGCAAACTTCTACTT
1 ACCTCTCACTTACAAGATTTTCAAAATCTCGCGATTTATCGATTTACGATCGCAACCTCCTACTT
* * * * ** *
80325634 ATGAGATTTTCAGAATCTCACTATTTGTTGATTTATGATCGCA
66 ATAAGATTTTTAGAATCTTACTATTTATCAATTTAGGATCGCA
* ** * * *
80325677 ACCTCTTACTTATGAGATTTTTAAAATCTCGCGATTTGTCGATTTACGATTGCAACCTCCTACTT
1 ACCTCTCACTTACAAGATTTTCAAAATCTCGCGATTTATCGATTTACGATCGCAACCTCCTACTT
80325742 ATAAGATTTTTAGAATCTTAC-AGTTTATCAATTTAGGATCGCA
66 ATAAGATTTTTAGAATCTTACTA-TTTATCAATTTAGGATCGCA
* * * * * * * *
80325785 ACCTCTCATTTACAAGATTTTCAAAATCTTGTGGTTTATCGATATGCAATCGCAACCTACC-GCT
1 ACCTCTCACTTACAAGATTTTCAAAATCTCGCGATTTATCGATTTACGATCGCAACCT-CCTACT
*
80325849 TACAAGA-TTTTAGAATCTT
65 TATAAGATTTTTAGAATCTT
80325868 GTTGATGCCA
Statistics
Matches: 159, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
107 13 0.08
108 144 0.91
109 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (108 bp):
ACCTCTCACTTACAAGATTTTCAAAATCTCGCGATTTATCGATTTACGATCGCAACCTCCTACTT
ATAAGATTTTTAGAATCTTACTATTTATCAATTTAGGATCGCA
Found at i:80326234 original size:24 final size:23
Alignment explanation
Indices: 80326206--80326429 Score: 142
Period size: 24 Copynumber: 9.4 Consensus size: 23
80326196 GCACAGGTGG
80326206 CATAATTTTCTGCTGTATAGCTCA
1 CATAATTTTCTGCTGTATAGCT-A
* * **
80326230 TATAATTTTCTACTACATAGCTAA
1 CATAATTTTCTGCTGTATAGCT-A
* *
80326254 CATAATTTTCTGTTGTATAGCTTG
1 CATAATTTTCTGCTGTATAGC-TA
* *
80326278 CATAATTTTCTGCTGCACAGCTA
1 CATAATTTTCTGCTGTATAGCTA
* * *
80326301 GCATAATTTTCTGTTGTATAGTTT
1 -CATAATTTTCTGCTGTATAGCTA
* * * *
80326325 CATATTTTTTTGTTGTAGAGCTA
1 CATAATTTTCTGCTGTATAGCTA
* * ** *
80326348 GCATAATCTTCTACTCCACAGCTA
1 -CATAATTTTCTGCTGTATAGCTA
* * *
80326372 GCATAATTTTCTGCTATACAGTTTA
1 -CATAATTTTCTGCTGTATAG-CTA
* * *
80326397 CATAATTTTCTACTGCACAGCTA
1 CATAATTTTCTGCTGTATAGCTA
80326420 GCATAATTTT
1 -CATAATTTT
80326430 TTGTTGTAGA
Statistics
Matches: 153, Mismatches: 42, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
23 21 0.14
24 129 0.84
25 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (23 bp):
CATAATTTTCTGCTGTATAGCTA
Found at i:80326234 original size:48 final size:48
Alignment explanation
Indices: 80326156--80326321 Score: 188
Period size: 48 Copynumber: 3.4 Consensus size: 48
80326146 TCACCAGTTC
* * * * * *
80326156 GCATAATTTTTTTACTGTATAGTTCGTATAAATTTCTACTGCACAGGTG
1 GCATAA-TTTTCTGCTGTATAGCTCGTATAATTTTCTACTGCACAGCTA
* * *
80326205 GCATAATTTTCTGCTGTATAGCTCATATAATTTTCTACTACATAGCTA
1 GCATAATTTTCTGCTGTATAGCTCGTATAATTTTCTACTGCACAGCTA
* * * * *
80326253 ACATAATTTTCTGTTGTATAGCTTGCATAATTTTCTGCTGCACAGCTA
1 GCATAATTTTCTGCTGTATAGCTCGTATAATTTTCTACTGCACAGCTA
*
80326301 GCATAATTTTCTGTTGTATAG
1 GCATAATTTTCTGCTGTATAG
80326322 TTTCATATTT
Statistics
Matches: 99, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
48 93 0.94
49 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (48 bp):
GCATAATTTTCTGCTGTATAGCTCGTATAATTTTCTACTGCACAGCTA
Found at i:80326378 original size:119 final size:120
Alignment explanation
Indices: 80326205--80326454 Score: 324
Period size: 119 Copynumber: 2.1 Consensus size: 120
80326195 TGCACAGGTG
* * * * * * * *
80326205 GCATAATTTTCTGCTGTATAGCTCA-TATAATTTTCTACTACATAGCTAACATAATTTTCTGTTG
1 GCATAATTTTTTGTTGTAGAGCT-AGCATAATCTTCTACTACACAGCTAACATAATTTTCTGCTA
* * * *
80326269 TATAGCTTGCATAATTTTCTGCTGCACAGCTAGCATAATTTTCTGTTGTATAGTTT
65 TACAGCTTACATAATTTTCTACTGCACAGCTAGCATAATTTTCTGTTGTAGAGTTT
* * *
80326325 -CATATTTTTTTGTTGTAGAGCTAGCATAATCTTCTACTCCACAGCTAGCATAATTTTCTGCTAT
1 GCATAATTTTTTGTTGTAGAGCTAGCATAATCTTCTACTACACAGCTAACATAATTTTCTGCTAT
* *
80326389 ACAGTTTACATAATTTTCTACTGCACAGCTAGCATAATTTTTTGTTGTAGAGTTT
66 ACAGCTTACATAATTTTCTACTGCACAGCTAGCATAATTTTCTGTTGTAGAGTTT
80326444 GCATAATTTTT
1 GCATAATTTTT
80326455 CGCTACACAA
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
118 1 0.01
119 100 0.91
120 9 0.08
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (120 bp):
GCATAATTTTTTGTTGTAGAGCTAGCATAATCTTCTACTACACAGCTAACATAATTTTCTGCTAT
ACAGCTTACATAATTTTCTACTGCACAGCTAGCATAATTTTCTGTTGTAGAGTTT
Found at i:80326395 original size:71 final size:72
Alignment explanation
Indices: 80326253--80326426 Score: 215
Period size: 71 Copynumber: 2.4 Consensus size: 72
80326243 TACATAGCTA
* * * * * * *
80326253 ACATAATTTTCTGTTGTATAGCTTGCATAATTTTCTGCTGCACAGCTAGCATAATTTTCTGTTGT
1 ACATAATTTTCTGTTGTAGAGCTAGCATAATCTTCTACTCCACAGCTAGCATAATTTTCTGCTAT
*
80326318 ATAGTTT
66 ACAGTTT
* *
80326325 -CATATTTTTTTGTTGTAGAGCTAGCATAATCTTCTACTCCACAGCTAGCATAATTTTCTGCTAT
1 ACATAATTTTCTGTTGTAGAGCTAGCATAATCTTCTACTCCACAGCTAGCATAATTTTCTGCTAT
80326389 ACAGTTT
66 ACAGTTT
** * *
80326396 ACATAATTTTCTACTGCACAGCTAGCATAAT
1 ACATAATTTTCTGTTGTAGAGCTAGCATAAT
80326427 TTTTTGTTGT
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
71 61 0.72
72 24 0.28
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.42
Consensus pattern (72 bp):
ACATAATTTTCTGTTGTAGAGCTAGCATAATCTTCTACTCCACAGCTAGCATAATTTTCTGCTAT
ACAGTTT
Found at i:80326478 original size:48 final size:48
Alignment explanation
Indices: 80326325--80326479 Score: 177
Period size: 48 Copynumber: 3.2 Consensus size: 48
80326315 TGTATAGTTT
* * * * *
80326325 CATATTTTTTTGTTGTAGAGCTAGCATAATCTTCTACTCCACAGCTAG
1 CATAATTTTTTGTTGTAGAGTTTGCATAATTTTCTACTACACAGCTAG
* * * * * *
80326373 CATAATTTTCTGCTATACAGTTTACATAATTTTCTACTGCACAGCTAG
1 CATAATTTTTTGTTGTAGAGTTTGCATAATTTTCTACTACACAGCTAG
* *
80326421 CATAATTTTTTGTTGTAGAGTTTGCATAATTTT-TCGCTACACAACTAG
1 CATAATTTTTTGTTGTAGAGTTTGCATAATTTTCT-ACTACACAGCTAG
80326469 CATAATTTTTT
1 CATAATTTTTT
80326480 ACTACATAGC
Statistics
Matches: 88, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
47 1 0.01
48 87 0.99
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (48 bp):
CATAATTTTTTGTTGTAGAGTTTGCATAATTTTCTACTACACAGCTAG
Found at i:80327189 original size:12 final size:12
Alignment explanation
Indices: 80327172--80327205 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
80327162 TTCCCTTTAA
80327172 AATAGTAAA-ATT
1 AATAGTAAAGA-T
80327184 AATAGTAAAGAT
1 AATAGTAAAGAT
80327196 AATAGTAAAG
1 AATAGTAAAG
80327206 GAGAAGTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 20 0.95
13 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (12 bp):
AATAGTAAAGAT
Found at i:80328095 original size:10 final size:10
Alignment explanation
Indices: 80328080--80328111 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
80328070 TAAATACATT
80328080 TAATTAAAGA
1 TAATTAAAGA
80328090 TAATTAAAGA
1 TAATTAAAGA
80328100 TAATTAAA-A
1 TAATTAAAGA
80328109 TAA
1 TAA
80328112 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:80328123 original size:19 final size:18
Alignment explanation
Indices: 80328099--80328142 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
80328089 ATAATTAAAG
80328099 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
80328119 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
80328136 ATAATTA
1 ATAATTA
80328143 TCCTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:80328157 original size:15 final size:15
Alignment explanation
Indices: 80328137--80328166 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80328127 ATAATCCTAA
80328137 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80328152 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80328167 AAATAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:80329699 original size:39 final size:38
Alignment explanation
Indices: 80329610--80329705 Score: 120
Period size: 39 Copynumber: 2.5 Consensus size: 38
80329600 ATCCTTGTTG
* * *
80329610 TAATTATTGTAATTATAATTTATGATCGAATATTATTA
1 TAATTATTGTAATTATAATTTATCATCAAACATTATTA
* * *
80329648 TAACTATTGTAATTGTAATTTTTCAGTCAAACATTATTA
1 TAATTATTGTAATTATAATTTATCA-TCAAACATTATTA
*
80329687 TAATTATGGTAATTATAAT
1 TAATTATTGTAATTATAAT
80329706 CGATTAATTG
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
38 21 0.44
39 27 0.56
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (38 bp):
TAATTATTGTAATTATAATTTATCATCAAACATTATTA
Found at i:80330993 original size:38 final size:39
Alignment explanation
Indices: 80330943--80331024 Score: 112
Period size: 38 Copynumber: 2.1 Consensus size: 39
80330933 CAATTTGATC
* * *
80330943 TAATTTGATTCTTGTACATAATGTCATTATTTAGCCATA
1 TAATTTGATTCTTCTACAGAATATCATTATTTAGCCATA
* *
80330982 TAATTT-ATTCTTCTACAGAATATCATTATTTATCCTTA
1 TAATTTGATTCTTCTACAGAATATCATTATTTAGCCATA
80331020 TAATT
1 TAATT
80331025 GACACTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
38 32 0.84
39 6 0.16
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.49
Consensus pattern (39 bp):
TAATTTGATTCTTCTACAGAATATCATTATTTAGCCATA
Found at i:80333111 original size:41 final size:42
Alignment explanation
Indices: 80333051--80333228 Score: 217
Period size: 41 Copynumber: 4.4 Consensus size: 42
80333041 GACGTTTTTT
** *
80333051 AAAACGCCGCTAAAAACAGAGCAACAGCGGCG-TTTTAGTAA
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAA
*
80333092 AAAATGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT--
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAA
* * *
80333132 AAAACGCAGCTAAAAACCAGAGCATTAACGACGCTTTTGGT--
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAA
*
80333173 AAAACACCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT--
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAA
80333214 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
80333229 GTCATATAAC
Statistics
Matches: 122, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 14 0.11
41 102 0.84
42 6 0.05
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (42 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGTAA
Found at i:80333144 original size:81 final size:81
Alignment explanation
Indices: 80333022--80333228 Score: 260
Period size: 82 Copynumber: 2.6 Consensus size: 81
80333012 GCAAAAATTT
* * * * *
80333022 TAAAATACAGAGCAATAGCGACG-TTTT-TTAAAACGCCGCTAAAAA-CAGAGCAACAGCGGCG-
1 TAAAA-ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCAACAACGACGC
80333083 TTTTAGTAAAAAATGCCGC
65 TTTTAGTAAAAAA--CCGC
* **
80333102 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCAGCTAAAAACCAGAGCATTAACGACGCT
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCAACAACGACGCT
* *
80333167 TTTGGTAAAACACCGC
66 TTTAGTAAAAAACCGC
80333183 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
80333229 GTCATATAAC
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
79 15 0.14
80 9 0.08
81 26 0.23
82 50 0.45
83 11 0.10
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (81 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCAACAACGACGCT
TTTAGTAAAAAACCGC
Found at i:80333408 original size:14 final size:14
Alignment explanation
Indices: 80333386--80333430 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
80333376 TTAATTATCA
*
80333386 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
80333400 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
80333414 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
80333428 TTA
1 TTA
80333431 AGCAGGTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:80333421 original size:21 final size:21
Alignment explanation
Indices: 80333397--80333481 Score: 71
Period size: 21 Copynumber: 3.7 Consensus size: 21
80333387 TATAGTTTAA
*
80333397 GGTTTATGGTTTAAGATATAT
1 GGTTTAGGGTTTAAGATATAT
*
80333418 GGTTTAGGGTTTAAGCAGGTTTAT
1 GGTTTAGGGTTTAAG-A--TATAT
*
80333442 GAGTTAACTATGGTTTAAGATATAT
1 G-GTT---TAGGGTTTAAGATATAT
*
80333467 AGTTTAGGGTTTAAG
1 GGTTTAGGGTTTAAG
80333482 GTTTAAGAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
21 24 0.47
22 1 0.02
24 8 0.16
25 7 0.14
27 1 0.02
28 10 0.20
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.42
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGATATAT
Found at i:80333459 original size:49 final size:46
Alignment explanation
Indices: 80333401--80333496 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 46
80333391 GTTTAAGGTT
* *
80333401 TATGGTTTAAGATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTT-A--AGGTTTAAGAGTTAAC
80333450 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
80333496 T
1 T
80333497 TGTATTTGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 16 0.36
48 1 0.02
49 28 0.62
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
Found at i:80333546 original size:14 final size:15
Alignment explanation
Indices: 80333519--80333547 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80333509 TTTGTGATGA
80333519 ATTATGATTTTAGGG
1 ATTATGATTTTAGGG
80333534 ATTATGA-TTTAGGG
1 ATTATGATTTTAGGG
80333548 TTTAAGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (15 bp):
ATTATGATTTTAGGG
Found at i:80334417 original size:16 final size:16
Alignment explanation
Indices: 80334396--80334439 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
80334386 TTCTTTTTTT
80334396 TATAAATTTAAAAAAA
1 TATAAATTTAAAAAAA
* *
80334412 TATAAATTTAAAATAT
1 TATAAATTTAAAAAAA
*
80334428 TATAAATATAAA
1 TATAAATTTAAA
80334440 TTTAAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TATAAATTTAAAAAAA
Found at i:80338709 original size:22 final size:23
Alignment explanation
Indices: 80338667--80338709 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
80338657 TTTCAAAAAT
*
80338667 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
80338690 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
80338710 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:80338839 original size:43 final size:43
Alignment explanation
Indices: 80338729--80338845 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
80338719 AATAATTTTT
* * * * * * *
80338729 TTAAAGTTCATGATTTTTAGCGGCATTTGTAGGAAAAGTGCTG
1 TTAAAGGTCATGATCTTTAGCGGCGTTTTTTGGAAAAGCGCCG
*
80338772 TTAAAGGTCATGACCTTTAGCGGCGTTTTTTGGAAAAGCGCCG
1 TTAAAGGTCATGATCTTTAGCGGCGTTTTTTGGAAAAGCGCCG
80338815 TTAAAGGTCATGATCTTTAGCGGCGTTTTTT
1 TTAAAGGTCATGATCTTTAGCGGCGTTTTTT
80338846 TTAAAAAATG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.37
Consensus pattern (43 bp):
TTAAAGGTCATGATCTTTAGCGGCGTTTTTTGGAAAAGCGCCG
Found at i:80344462 original size:25 final size:27
Alignment explanation
Indices: 80344419--80344472 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
80344409 TAATAAATTA
80344419 TTAATATAATTAATATAAT-TTATTAAT
1 TTAATATAATTAATATAATATT-TTAAT
*
80344446 TTAATA-AATT-ATTTAATATTTTAAT
1 TTAATATAATTAATATAATATTTTAAT
80344471 TT
1 TT
80344473 TATTTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 13 0.52
26 6 0.24
27 6 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TTAATATAATTAATATAATATTTTAAT
Found at i:80344470 original size:38 final size:40
Alignment explanation
Indices: 80344379--80344470 Score: 113
Period size: 38 Copynumber: 2.4 Consensus size: 40
80344369 TAAACATATA
*
80344379 TATTTAAT-TATTT-ATATATATTTAGTCATATAATAAAT
1 TATTTAATATATTTAATATATATTTAGTAATATAATAAAT
* * *
80344417 TA-TTAATATAATTAATATA-ATTTATTAATTTAATAAAT
1 TATTTAATATATTTAATATATATTTAGTAATATAATAAAT
80344455 TATTTAATAT-TTTAAT
1 TATTTAATATATTTAAT
80344471 TTTATTTTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
37 5 0.11
38 29 0.63
39 12 0.26
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (40 bp):
TATTTAATATATTTAATATATATTTAGTAATATAATAAAT
Found at i:80344507 original size:16 final size:17
Alignment explanation
Indices: 80344479--80344515 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
80344469 ATTTTATTTT
80344479 AATAATAAATTTTAAAA
1 AATAATAAATTTTAAAA
*
80344496 AATAAT-AATTTTAAAT
1 AATAATAAATTTTAAAA
80344512 AATA
1 AATA
80344516 TTCTTCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATAATAAATTTTAAAA
Found at i:80345107 original size:50 final size:51
Alignment explanation
Indices: 80345049--80345145 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 51
80345039 TTCGAAAATC
* * * *
80345049 ATTTTCGGTGAAACAAATAGACTTTTAAA-TTAAAAAAAATCAATCACACT
1 ATTTTCGGTGAAACAAACACACCTTTAAATTTAAAAAAAAACAATCACACT
80345099 ATTTTCGGTGAAACAAACACACCTTTAAATTTAAAAAAAAACAATCA
1 ATTTTCGGTGAAACAAACACACCTTTAAATTTAAAAAAAAACAATCA
80345146 TTATAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 26 0.62
51 16 0.38
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.28
Consensus pattern (51 bp):
ATTTTCGGTGAAACAAACACACCTTTAAATTTAAAAAAAAACAATCACACT
Found at i:80357964 original size:17 final size:17
Alignment explanation
Indices: 80357942--80357980 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
80357932 TTTCAAGCTA
80357942 AAGCCTTTACACCTTGC
1 AAGCCTTTACACCTTGC
80357959 AAGCCTTTACACCTTGC
1 AAGCCTTTACACCTTGC
80357976 AAGCC
1 AAGCC
80357981 AACCACATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.13, T:0.26
Consensus pattern (17 bp):
AAGCCTTTACACCTTGC
Found at i:80361383 original size:10 final size:9
Alignment explanation
Indices: 80361369--80361532 Score: 75
Period size: 9 Copynumber: 17.2 Consensus size: 9
80361359 AATAAAAGTA
80361369 ATAAAAATT
1 ATAAAAATT
**
80361378 ATTAAATTTT
1 A-TAAAAATT
80361388 AATAAAAA-T
1 -ATAAAAATT
80361397 ATAAAAATAT
1 ATAAAAAT-T
80361407 ATTTAAAAATT
1 A--TAAAAATT
*
80361418 ATAAAAATC
1 ATAAAAATT
80361427 ATAAAACA-T
1 ATAAAA-ATT
*
80361436 ATAGAAA-T
1 ATAAAAATT
**
80361444 ATAAAAAAA
1 ATAAAAATT
80361453 ATAGAAAATT
1 ATA-AAAATT
* *
80361463 GTATAAATT
1 ATAAAAATT
80361472 CATAAGAAAATT
1 -AT-A-AAAATT
*
80361484 ATAAAAAAT
1 ATAAAAATT
* *
80361493 GTAAAGAAAT
1 ATAAA-AATT
80361503 AT-AAAATT
1 ATAAAAATT
*
80361511 CATAAAAAAAT
1 -AT-AAAAATT
80361522 ATAAAAATT
1 ATAAAAATT
80361531 AT
1 AT
80361533 CGTATAAAAA
Statistics
Matches: 118, Mismatches: 21, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
8 18 0.15
9 49 0.42
10 28 0.24
11 11 0.09
12 12 0.10
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (9 bp):
ATAAAAATT
Found at i:80361447 original size:17 final size:18
Alignment explanation
Indices: 80361410--80361459 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
80361400 AAAATATATT
* *
80361410 TAAAAATTATAAAAATCA
1 TAAAAAATATAGAAATCA
*
80361428 TAAAACATATAGAAAT-A
1 TAAAAAATATAGAAATCA
*
80361445 TAAAAAAAATAGAAA
1 TAAAAAATATAGAAA
80361460 ATTGTATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (18 bp):
TAAAAAATATAGAAATCA
Found at i:80361734 original size:29 final size:29
Alignment explanation
Indices: 80361702--80361783 Score: 101
Period size: 30 Copynumber: 2.8 Consensus size: 29
80361692 TTTTTGATGT
*
80361702 ATTTTATAATTTTTTAAATTTTTAATAAA
1 ATTTAATAATTTTTTAAATTTTTAATAAA
* * *
80361731 ATTTAAATATTTTTTTATATTTTTATTAAA
1 ATTT-AATAATTTTTTAAATTTTTAATAAA
*
80361761 ATTTAATAATTTTTATAACTTTT
1 ATTTAATAATTTTT-TAAATTTT
80361784 ATTGATTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 13 0.30
30 31 0.70
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTAATAATTTTTTAAATTTTTAATAAA
Found at i:80361775 original size:10 final size:10
Alignment explanation
Indices: 80361703--80361809 Score: 50
Period size: 9 Copynumber: 11.4 Consensus size: 10
80361693 TTTTGATGTA
80361703 TTTT-ATAAT
1 TTTTAATAAT
*
80361712 TTTTTA-AAT
1 TTTTAATAAT
*
80361721 TTTTAATAAAA
1 TTTTAAT-AAT
* *
80361732 TTTAAATATT
1 TTTTAATAAT
*
80361742 TTTTTAT-AT
1 TTTTAATAAT
* *
80361751 TTTTATTAAA
1 TTTTAATAAT
*
80361761 ATTTAATAAT
1 TTTTAATAAT
*
80361771 TTTT-ATAAC
1 TTTTAATAAT
* *
80361780 TTTTATTGAT
1 TTTTAATAAT
80361790 TTTT-AT--T
1 TTTTAATAAT
80361797 TTTT-ATAAT
1 TTTTAATAAT
80361806 TTTT
1 TTTT
80361810 GCCACGTGTC
Statistics
Matches: 71, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
7 7 0.10
9 32 0.45
10 24 0.34
11 8 0.11
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:80374302 original size:47 final size:47
Alignment explanation
Indices: 80374249--80374342 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
80374239 AAGGTCAAGT
*
80374249 TAGCCAACTC-CTCCTCCATTGTGCATAAGAAGAAATAACAGGCCGTG
1 TAGCCAACTCTC-CCTCCATTGCGCATAAGAAGAAATAACAGGCCGTG
80374296 TAGCCAACTCTCCCTCCATTGCGCATAAGAAGAAATAACAGGCCGTG
1 TAGCCAACTCTCCCTCCATTGCGCATAAGAAGAAATAACAGGCCGTG
80374343 CCAAACAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 44 0.98
48 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (47 bp):
TAGCCAACTCTCCCTCCATTGCGCATAAGAAGAAATAACAGGCCGTG
Found at i:80374427 original size:24 final size:26
Alignment explanation
Indices: 80374394--80374446 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
80374384 TCAAAAAACC
* *
80374394 AAAACCGCGTGTCACACGATAGAC-G
1 AAAACCGCGTGTCAAACGACAGACTG
80374419 AAAA-CGCGTGTCAAACGACAGACTG
1 AAAACCGCGTGTCAAACGACAGACTG
80374444 AAA
1 AAA
80374447 GGATTGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.42, C:0.25, G:0.23, T:0.11
Consensus pattern (26 bp):
AAAACCGCGTGTCAAACGACAGACTG
Found at i:80383647 original size:266 final size:266
Alignment explanation
Indices: 80383173--80383701 Score: 1013
Period size: 266 Copynumber: 2.0 Consensus size: 266
80383163 CGTGATAAGA
80383173 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
80383238 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
*
80383303 GAGCAACGGGTCACGGCCCGGATTGAGTAAAAAAGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAAGAGATATAAGATACGTCCCTTTTGAAGAGTT
*
80383368 CGTGAGACTTATCTTAACGCTCGAATGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
196 CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
80383433 CCGTAT
261 CCGTAT
80383439 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
*
80383504 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAGAGAAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
*
80383569 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAAGAGATATAAGATACGTCCCTTTTGAAGAGTT
*
80383634 TGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
196 CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
80383699 CCG
261 CCG
80383702 AATATGTATC
Statistics
Matches: 258, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
266 258 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (266 bp):
GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAAGAGATATAAGATACGTCCCTTTTGAAGAGTT
CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
CCGTAT
Found at i:80383893 original size:62 final size:62
Alignment explanation
Indices: 80383827--80384010 Score: 314
Period size: 62 Copynumber: 3.0 Consensus size: 62
80383817 CACGTATCTC
* *
80383827 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
80383889 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCTTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
80383951 TTCATGCATCAACATTACATTTTATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACG
80384011 TCGAGTTTAG
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:80385317 original size:12 final size:11
Alignment explanation
Indices: 80385262--80385319 Score: 53
Period size: 12 Copynumber: 5.0 Consensus size: 11
80385252 GTGGAGGCCA
80385262 AAAAAAAAGAAC
1 AAAAAAAA-AAC
* *
80385274 AAATAAAAACC
1 AAAAAAAAAAC
*
80385285 AAATAAAAAAC
1 AAAAAAAAAAC
*
80385296 AAAAGCAAAAAC
1 AAAA-AAAAAAC
80385308 AAGAAAAAAAAC
1 AA-AAAAAAAAC
80385320 TCTACCAGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
11 15 0.39
12 21 0.55
13 2 0.05
ACGTcount: A:0.79, C:0.12, G:0.05, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:80386293 original size:108 final size:108
Alignment explanation
Indices: 80386104--80386299 Score: 329
Period size: 108 Copynumber: 1.8 Consensus size: 108
80386094 TTTGTATTCT
*
80386104 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
80386169 ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
* ** *
80386212 AGCAAAATTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
* *
80386277 GTCCATTTTGATAATCTTTTTCA
66 ATCCATTGTGATAATCTTTTTCA
80386300 AGCATTTTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 81 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
Found at i:80387012 original size:132 final size:132
Alignment explanation
Indices: 80386775--80388925 Score: 2381
Period size: 132 Copynumber: 16.3 Consensus size: 132
80386765 TGAAGTCATT
** ** *
80386775 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAATAGGTCCGGTTTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
*
80386840 TATTGGTAGGAAGTGGATCAACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80386905 AG
131 AG
* * * * * *
80386907 AAAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATAAAAAATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
80386972 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80387037 AG
131 AG
* * *
80387039 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
*
80387104 TATTGGTAGGAAGTGGATCAACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80387169 AG
131 AG
* * *
80387171 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
80387236 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80387301 AG
131 AG
* * **
80387303 AAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * *
80387368 TATTGGTAGGAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80387433 AG
131 AG
* * * **** ** * * * * ** *
80387435 AAAGCAGATCTTATCTTCCTATATTGGTAAAAAGTAGATTGAATATTGCAGATCTTGCCTTCCTG
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* ** * * **
80387500 TATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT-TT-TACCTCCC-TAACTACAGT-G-G-AGT
66 TATT-GGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-CTTCCCAT-A-T-TGGTGGCGAAGT
* *
80387559 ACAT---TG
124 AGATCGCAG
* * * * ** * * * **
80387565 -AAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 AAAGCAGAT--CT-TGTCTTCATGTA-TTGGC-GT-GAAGTAGATCAAAGATAGCAGGTCCTATC
* * ** * * * *
80387628 TTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT-TTTTACCTCCC-TGACTATAGT-G
60 TTCCTATA-TTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-CTTCCCAT-A-T-TGGTGG
* *
80387690 -G-AGTACAT---TG
118 CGAAGTAGATCGCAG
* * * * ** * * * **
80387700 -AAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 AAAGCAGAT--CT-TGTCTTCATGTAT-TGGC-GT-GAAGTAGATCAAAGATAGCAGGTCCTATC
* * * ** * * *
80387763 TTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGAT-TT-TACCT-CCATGATTACAGT-G
60 TTCCTATA-TTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-CTTCCCAT-ATT--GGTGG
* *
80387824 -G-AGTACAT---TG
118 CGAAGTAGATCGCAG
* ** ***** ** * * *
80387834 -AAGCTGATAGT-TCTATC-TCCCGGGGCAAGAAGTAGATCGAAGATAGCTGATCCTATCTTCCT
1 AAAGCAGATCTTGTCT-TCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCT
*
80387896 ATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
65 ATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
80387961 CAG
130 CAG
*
80387964 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * * *
80388029 TATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388094 AG
131 AG
*
80388096 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * *
80388161 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388226 AG
131 AG
*
80388228 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * *
80388293 TAATGATTGGAAGTGGATCGACGACGCAGATCTTGTCTTCTCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388358 AG
131 AG
* *
80388360 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * *
80388425 TAATGATTGGAAGTGGATCAACGATGCAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388490 AG
131 AG
* **
80388492 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTTTTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
80388557 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388622 AG
131 AG
* *
80388624 AAATCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * *
80388689 TAATGATTGGAAGTGGATCGATGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388754 AG
131 AG
*
80388756 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * * ** *
80388821 TAATGATTGGAAGTGGATCGACGACGCAGATTTTGTCTTCCCATATTGGTGGTAAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80388886 AG
131 AG
* *
80388888 AAAGTAGATCTTGTC-TCATGTATTGGCATGAAGTAGAT
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
80388926 TGAAGATTAC
Statistics
Matches: 1830, Mismatches: 156, Indels: 67
0.89 0.08 0.03
Matches are distributed among these distances:
124 2 0.00
125 7 0.00
126 19 0.01
127 20 0.01
128 26 0.01
129 10 0.01
130 6 0.00
131 36 0.02
132 1431 0.78
133 19 0.01
134 113 0.06
135 139 0.08
136 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:80387486 original size:44 final size:43
Alignment explanation
Indices: 80386834--80388951 Score: 244
Period size: 44 Copynumber: 48.1 Consensus size: 43
80386824 AGGTCCGGTT
* * * *
80386834 TTCCTATATTGGTAGGAAGTGGA-TCAACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAA-GATGCAGATCTTATC
* ** * * * * *
80386877 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGACCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * * *
80386922 TTCATGTATTGGCGTGAAGTAGATAAAAAATAGTAGGTCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * *
80386966 TTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80387009 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80387054 TTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * *
80387098 TTCCTATATTGGTAGGAAGTGGA-TCAACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAA-GATGCAGATCTTATC
* ** * * * *
80387141 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80387186 TTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * *
80387230 TTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80387273 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * ** * * ***
80387318 TTCATGTATTAGCGT--GAAGTAGATCAAAGATAACAGGTCCGGTC
1 TTCCTATATT-G-GTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * *
80387362 TTCCTATATTGGTAGGAAGTGGATTGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* * ** * *
80387405 TTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * **
80387450 TTCCTATATTGGTAAAAAGTAGATTGAATATTGCAGATCTTGCC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGA-TGCAGATCTTATC
* * * * * * *
80387494 TTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
1 TTCCTATATT-GGTA-AGAAGTAGATTGAAGAT-GCAGATCTTATC
* ** * * ** * *
80387540 TCCCTA-ACTACAGT--GGAGTACATTGAAGCCG-ATAACTCTATC
1 TTCCTATA-T-TGGTAAGAAGTAGATTGAAGATGCAGATCT-TATC
* * * * **
80387582 TCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 TTCCTATA-TTGGTA--AGAAGTAGATTGAAGA-TGCAGATCTTATC
* * * * * *
80387628 TTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGATTTTTACC
1 TTCCTATA-TTGGTA-AGAAGTAGATTGAAGAT-GCAGA-TCTTATC
* * * * ** * *
80387675 TCCCTGACTA-TAGT--GGAGTACATTGAAGCCG-ATAACTCTATC
1 TTCCT-A-TATTGGTAAGAAGTAGATTGAAGATGCAGATCT-TATC
* * * * **
80387717 TCCCTGTATCTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 TTCCTATAT-TGGTA--AGAAGTAGATTGAAGA-TGCAGATCTTATC
* * * * *
80387763 TTCCTGTATTTGG-CAGCAAAGCAGATCGAAGATGGCAGATTTTA-C
1 TTCCTATA-TTGGTAAG--AAGTAGATTGAAGAT-GCAGATCTTATC
* * * * * * *
80387808 CTCC-ATGATTACAGT--GGAGTACATTGAAGCTGATAGTTC-TATC
1 TTCCTAT-ATT--GGTAAGAAGTAGATTGAAGATG-CAGATCTTATC
*** * * * *
80387851 -TCC---CGGGGCAAGAAGTAGATCGAAGATAGCTGATCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * * *
80387891 TTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80387934 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** * * *
80387979 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * ** * *
80388023 TTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * *
80388066 TTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** * * *
80388111 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * **
80388155 TTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80388198 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80388243 TTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * * * *
80388287 TTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
** * * * *
80388330 TT-CTCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCT-ATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** * * * *
80388375 TTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * *
80388419 TTCCTATAATGATTGGAAGTGGA-TCAACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAA-GATGCAGATCTTATC
* *** * * * *
80388462 TTCCCATATTGGCGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGG-TAAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80388507 TTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTTTTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * *
80388551 TTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * *
80388594 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAT-CAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTG-A-AGATGCAGATCTTATC
* * *** ** * * *
80388639 TTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * * * *
80388683 TTCCTATAATGATTGGAAGTGGATCGATGACGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80388726 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80388771 TTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * * * * *
80388815 TTCCTATAATGATTGGAAGTGGATCGACGACGCAGATTTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* * * * * *
80388858 TTCCCATATTGGT-GGTAAAGTAGATCGAAGAAAGTAGATCTTGTC
1 TTCCTATATTGGTAAG--AAGTAGATTGAAG-ATGCAGATCTTATC
* * * * *
80388903 -TCATGTATTGGCATGAAGTAGATTGAAGATTACAGATCTTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGA-TGCAGATCTTATC
*
80388946 TCCCTA
1 TTCCTA
80388952 AGCAGTAGTG
Statistics
Matches: 1482, Mismatches: 492, Indels: 201
0.68 0.23 0.09
Matches are distributed among these distances:
37 1 0.00
39 15 0.01
40 7 0.00
41 7 0.00
42 38 0.03
43 312 0.21
44 672 0.45
45 309 0.21
46 97 0.07
47 22 0.01
49 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
Found at i:80387643 original size:46 final size:46
Alignment explanation
Indices: 80387581--80387778 Score: 149
Period size: 46 Copynumber: 4.4 Consensus size: 46
80387571 ATAACTCTAT
*
80387581 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * * *
80387627 CTTCCTGTATTTGGCAG-AGAAGCAGATCGAAGATGGCAGATTTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGA-TCTTAC
* * * ** * * *
80387674 CTCCCTG-ACTAT---AGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTA-TTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
* *
80387716 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
80387762 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
80387779 CAAAGCAGAT
Statistics
Matches: 110, Mismatches: 31, Indels: 22
0.67 0.19 0.13
Matches are distributed among these distances:
41 1 0.01
42 13 0.12
43 2 0.02
44 9 0.08
45 20 0.18
46 49 0.45
47 16 0.15
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:80387739 original size:135 final size:134
Alignment explanation
Indices: 80387469--80387854 Score: 648
Period size: 135 Copynumber: 2.9 Consensus size: 134
80387459 TGGTAAAAAG
* * *
80387469 TAGATTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
* *
80387534 TTTACCTCCCTAACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
80387599 GGAA
131 GGAA
80387603 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGA-
*
80387668 TTTTACCTCCCTGACTATAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
65 TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
80387733 TGGAA
130 TGGAA
80387738 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA-AAGCAGATCGAAGATGGCAGA
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG-AGAAGCAGATCGAAGATGGCAGA
* * * **
80387802 TTTTACCTCCATGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCC
65 TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
80387855 GGGGCAAGAA
Statistics
Matches: 238, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
134 108 0.45
135 129 0.54
136 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
GGAA
Found at i:80399872 original size:132 final size:132
Alignment explanation
Indices: 80399635--80401785 Score: 2381
Period size: 132 Copynumber: 16.3 Consensus size: 132
80399625 TGAAGTCATT
** ** *
80399635 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAATAGGTCCGGTTTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
*
80399700 TATTGGTAGGAAGTGGATCAACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80399765 AG
131 AG
* * * * * *
80399767 AAAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATAAAAAATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
80399832 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80399897 AG
131 AG
* * *
80399899 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
*
80399964 TATTGGTAGGAAGTGGATCAACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80400029 AG
131 AG
* * *
80400031 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
80400096 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80400161 AG
131 AG
* * **
80400163 AAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * *
80400228 TATTGGTAGGAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80400293 AG
131 AG
* * * **** ** * * * * ** *
80400295 AAAGCAGATCTTATCTTCCTATATTGGTAAAAAGTAGATTGAATATTGCAGATCTTGCCTTCCTG
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* ** * * **
80400360 TATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT-TT-TACCTCCC-TAACTACAGT-G-G-AGT
66 TATT-GGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-CTTCCCAT-A-T-TGGTGGCGAAGT
* *
80400419 ACAT---TG
124 AGATCGCAG
* * * * ** * * * **
80400425 -AAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 AAAGCAGAT--CT-TGTCTTCATGTA-TTGGC-GT-GAAGTAGATCAAAGATAGCAGGTCCTATC
* * ** * * * *
80400488 TTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT-TTTTACCTCCC-TGACTATAGT-G
60 TTCCTATA-TTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-CTTCCCAT-A-T-TGGTGG
* *
80400550 -G-AGTACAT---TG
118 CGAAGTAGATCGCAG
* * * * ** * * * **
80400560 -AAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 AAAGCAGAT--CT-TGTCTTCATGTAT-TGGC-GT-GAAGTAGATCAAAGATAGCAGGTCCTATC
* * * ** * * *
80400623 TTCCTGTATTTGGCAGCAAAGCAGATCGAAGATGGCAGAT-TT-TACCT-CCATGATTACAGT-G
60 TTCCTATA-TTGGTAG-GAAGTGGATCGACGAT-GCAGATCTTGT-CTTCCCAT-ATT--GGTGG
* *
80400684 -G-AGTACAT---TG
118 CGAAGTAGATCGCAG
* ** ***** ** * * *
80400694 -AAGCTGATAGT-TCTATC-TCCCGGGGCAAGAAGTAGATCGAAGATAGCTGATCCTATCTTCCT
1 AAAGCAGATCTTGTCT-TCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCT
*
80400756 ATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
65 ATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG
80400821 CAG
130 CAG
*
80400824 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * * *
80400889 TATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80400954 AG
131 AG
*
80400956 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * *
80401021 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80401086 AG
131 AG
*
80401088 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * *
80401153 TAATGATTGGAAGTGGATCGACGACGCAGATCTTGTCTTCTCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80401218 AG
131 AG
* *
80401220 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * *
80401285 TAATGATTGGAAGTGGATCAACGATGCAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80401350 AG
131 AG
* **
80401352 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTTTTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
80401417 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80401482 AG
131 AG
* *
80401484 AAATCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * *
80401549 TAATGATTGGAAGTGGATCGATGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80401614 AG
131 AG
*
80401616 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
* * * * * ** *
80401681 TAATGATTGGAAGTGGATCGACGACGCAGATTTTGTCTTCCCATATTGGTGGTAAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
80401746 AG
131 AG
* *
80401748 AAAGTAGATCTTGTC-TCATGTATTGGCATGAAGTAGAT
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
80401786 TGAAGATTAC
Statistics
Matches: 1830, Mismatches: 156, Indels: 67
0.89 0.08 0.03
Matches are distributed among these distances:
124 2 0.00
125 7 0.00
126 19 0.01
127 20 0.01
128 26 0.01
129 10 0.01
130 6 0.00
131 36 0.02
132 1431 0.78
133 19 0.01
134 113 0.06
135 139 0.08
136 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCCTA
TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:80400346 original size:44 final size:43
Alignment explanation
Indices: 80399694--80401811 Score: 244
Period size: 44 Copynumber: 48.1 Consensus size: 43
80399684 AGGTCCGGTT
* * * *
80399694 TTCCTATATTGGTAGGAAGTGGA-TCAACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAA-GATGCAGATCTTATC
* ** * * * * *
80399737 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGACCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * * *
80399782 TTCATGTATTGGCGTGAAGTAGATAAAAAATAGTAGGTCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * *
80399826 TTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80399869 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80399914 TTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * *
80399958 TTCCTATATTGGTAGGAAGTGGA-TCAACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAA-GATGCAGATCTTATC
* ** * * * *
80400001 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80400046 TTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * *
80400090 TTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80400133 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * ** * * ***
80400178 TTCATGTATTAGCGT--GAAGTAGATCAAAGATAACAGGTCCGGTC
1 TTCCTATATT-G-GTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * *
80400222 TTCCTATATTGGTAGGAAGTGGATTGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* * ** * *
80400265 TTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * **
80400310 TTCCTATATTGGTAAAAAGTAGATTGAATATTGCAGATCTTGCC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGA-TGCAGATCTTATC
* * * * * * *
80400354 TTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACC
1 TTCCTATATT-GGTA-AGAAGTAGATTGAAGAT-GCAGATCTTATC
* ** * * ** * *
80400400 TCCCTA-ACTACAGT--GGAGTACATTGAAGCCG-ATAACTCTATC
1 TTCCTATA-T-TGGTAAGAAGTAGATTGAAGATGCAGATCT-TATC
* * * * **
80400442 TCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 TTCCTATA-TTGGTA--AGAAGTAGATTGAAGA-TGCAGATCTTATC
* * * * * *
80400488 TTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGATTTTTACC
1 TTCCTATA-TTGGTA-AGAAGTAGATTGAAGAT-GCAGA-TCTTATC
* * * * ** * *
80400535 TCCCTGACTA-TAGT--GGAGTACATTGAAGCCG-ATAACTCTATC
1 TTCCT-A-TATTGGTAAGAAGTAGATTGAAGATGCAGATCT-TATC
* * * * **
80400577 TCCCTGTATCTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCC
1 TTCCTATAT-TGGTA--AGAAGTAGATTGAAGA-TGCAGATCTTATC
* * * * *
80400623 TTCCTGTATTTGG-CAGCAAAGCAGATCGAAGATGGCAGATTTTA-C
1 TTCCTATA-TTGGTAAG--AAGTAGATTGAAGAT-GCAGATCTTATC
* * * * * * *
80400668 CTCC-ATGATTACAGT--GGAGTACATTGAAGCTGATAGTTC-TATC
1 TTCCTAT-ATT--GGTAAGAAGTAGATTGAAGATG-CAGATCTTATC
*** * * * *
80400711 -TCC---CGGGGCAAGAAGTAGATCGAAGATAGCTGATCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * * *
80400751 TTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80400794 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** * * *
80400839 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * ** * *
80400883 TTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * *
80400926 TTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** * * *
80400971 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * **
80401015 TTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80401058 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80401103 TTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * * * *
80401147 TTCCTATAATGATTGGAAGTGGATCGACGACGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
** * * * *
80401190 TT-CTCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCT-ATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** * * * *
80401235 TTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * *
80401279 TTCCTATAATGATTGGAAGTGGA-TCAACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAA-GATGCAGATCTTATC
* *** * * * *
80401322 TTCCCATATTGGCGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGG-TAAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80401367 TTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTTTTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * * * *
80401411 TTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * *
80401454 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAT-CAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTG-A-AGATGCAGATCTTATC
* * *** ** * * *
80401499 TTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * * * *
80401543 TTCCTATAATGATTGGAAGTGGATCGATGACGCAGATCTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* ** * * * *
80401586 TTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
1 TTCCTATATTGGT-AAGAAGTAGATTGAAG-ATGCAGATCTTATC
* * *** ** * * *
80401631 TTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGAT-GCAGATCTTATC
* * ** * * * * * *
80401675 TTCCTATAATGATTGGAAGTGGATCGACGACGCAGATTTTGTC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
* * * * * *
80401718 TTCCCATATTGGT-GGTAAAGTAGATCGAAGAAAGTAGATCTTGTC
1 TTCCTATATTGGTAAG--AAGTAGATTGAAG-ATGCAGATCTTATC
* * * * *
80401763 -TCATGTATTGGCATGAAGTAGATTGAAGATTACAGATCTTATC
1 TTCCTATATTGGTAAGAAGTAGATTGAAGA-TGCAGATCTTATC
*
80401806 TCCCTA
1 TTCCTA
80401812 AGCAGTAGTG
Statistics
Matches: 1482, Mismatches: 492, Indels: 201
0.68 0.23 0.09
Matches are distributed among these distances:
37 1 0.00
39 15 0.01
40 7 0.00
41 7 0.00
42 38 0.03
43 312 0.21
44 672 0.45
45 309 0.21
46 97 0.07
47 22 0.01
49 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TTCCTATATTGGTAAGAAGTAGATTGAAGATGCAGATCTTATC
Found at i:80400503 original size:46 final size:46
Alignment explanation
Indices: 80400441--80400638 Score: 149
Period size: 46 Copynumber: 4.4 Consensus size: 46
80400431 ATAACTCTAT
*
80400441 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * * *
80400487 CTTCCTGTATTTGGCAG-AGAAGCAGATCGAAGATGGCAGATTTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGA-TCTTAC
* * * ** * * *
80400534 CTCCCTG-ACTAT---AGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTA-TTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
* *
80400576 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
80400622 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
80400639 CAAAGCAGAT
Statistics
Matches: 110, Mismatches: 31, Indels: 22
0.67 0.19 0.13
Matches are distributed among these distances:
41 1 0.01
42 13 0.12
43 2 0.02
44 9 0.08
45 20 0.18
46 49 0.45
47 16 0.15
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:80400599 original size:135 final size:134
Alignment explanation
Indices: 80400329--80400714 Score: 648
Period size: 135 Copynumber: 2.9 Consensus size: 134
80400319 TGGTAAAAAG
* * *
80400329 TAGATTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
* *
80400394 TTTACCTCCCTAACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
80400459 GGAA
131 GGAA
80400463 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGA-
*
80400528 TTTTACCTCCCTGACTATAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
65 TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
80400593 TGGAA
130 TGGAA
80400598 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA-AAGCAGATCGAAGATGGCAGA
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG-AGAAGCAGATCGAAGATGGCAGA
* * * **
80400662 TTTTACCTCCATGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCC
65 TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
80400715 GGGGCAAGAA
Statistics
Matches: 238, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
134 108 0.45
135 129 0.54
136 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
GGAA
Found at i:80410401 original size:40 final size:39
Alignment explanation
Indices: 80410341--80410481 Score: 119
Period size: 40 Copynumber: 3.6 Consensus size: 39
80410331 AATACACCAG
* *
80410341 TTTGGCACCCAGTGCCTCATCGAATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGAATAATCCGAAGTAA-AA
* * *
80410381 TTTGACACCCAGTGTCTCATC-AGTTAAACCGAAGT-AAA
1 TTTGACACCCAGTGCCTCATCGA-ATAATCCGAAGTAAAA
* *
80410419 -TTGGCACCCAGTGCCTCATTGAATTAATCCGAAGTAGCAAA
1 TTTGACACCCAGTGCCTCATCGAA-TAATCCGAAGTA--AAA
* * *
80410460 -TTGACATCTAGTGTCTCATCGA
1 TTTGACACCCAGTGCCTCATCGA
80410482 CTCGAAGTCG
Statistics
Matches: 80, Mismatches: 15, Indels: 11
0.75 0.14 0.10
Matches are distributed among these distances:
37 17 0.21
38 13 0.16
39 2 0.03
40 28 0.35
41 20 0.25
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (39 bp):
TTTGACACCCAGTGCCTCATCGAATAATCCGAAGTAAAA
Found at i:80412558 original size:19 final size:22
Alignment explanation
Indices: 80412534--80412575 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
80412524 AATACATGGT
80412534 ATTCATC-AT-AAAA-TTCAAA
1 ATTCATCAATGAAAACTTCAAA
80412553 ATTCATCAATGAAAACTTCAAA
1 ATTCATCAATGAAAACTTCAAA
80412575 A
1 A
80412576 AATTTTAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 2 0.10
21 4 0.20
22 7 0.35
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (22 bp):
ATTCATCAATGAAAACTTCAAA
Found at i:80416150 original size:17 final size:17
Alignment explanation
Indices: 80416128--80416163 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
80416118 AATATTATTT
*
80416128 ATTAAATTAAATTTTCA
1 ATTAAATAAAATTTTCA
80416145 ATTAAATAAAATTTTCA
1 ATTAAATAAAATTTTCA
80416162 AT
1 AT
80416164 CTAATTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAAATAAAATTTTCA
Found at i:80416494 original size:21 final size:22
Alignment explanation
Indices: 80416461--80416503 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
80416451 CATATATATA
80416461 TATAATTAGAGTTAAAATATTT
1 TATAATTAGAGTTAAAATATTT
* *
80416483 TATAATTA-AGTTTAATTATTT
1 TATAATTAGAGTTAAAATATTT
80416504 ATCTTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
TATAATTAGAGTTAAAATATTT
Found at i:80427105 original size:10 final size:10
Alignment explanation
Indices: 80427057--80427110 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
80427047 TAAAAGTAAT
80427057 AAAATTTTAA
1 AAAATTTTAA
80427067 AAAATATATTATA
1 AAAAT-T-TTA-A
**
80427080 AAAATCATAA
1 AAAATTTTAA
80427090 AAAATTTTAA
1 AAAATTTTAA
80427100 AAAA-TTTAA
1 AAAATTTTAA
80427109 AA
1 AA
80427111 TTCATTATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
9 7 0.19
10 18 0.49
11 3 0.08
12 3 0.08
13 6 0.16
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:80427250 original size:19 final size:21
Alignment explanation
Indices: 80427209--80427256 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
80427199 TTAAAATTTT
80427209 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
80427230 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
80427249 AACTAAAA
1 AACTAAAA
80427257 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:80428030 original size:44 final size:44
Alignment explanation
Indices: 80427967--80428055 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
80427957 CTATAGCATC
80427967 ATATAAGGCATAACATCTGTTAAAATAAAGTTGACACCTAAATG
1 ATATAAGGCATAACATCTGTTAAAATAAAGTTGACACCTAAATG
80428011 ATATAAGGCATAACATCTGTTAAAATAAAGTTGACACCTAAATG
1 ATATAAGGCATAACATCTGTTAAAATAAAGTTGACACCTAAATG
80428055 A
1 A
80428056 AAGCGATAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (44 bp):
ATATAAGGCATAACATCTGTTAAAATAAAGTTGACACCTAAATG
Found at i:80432509 original size:16 final size:14
Alignment explanation
Indices: 80432489--80432530 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
80432479 TACGGCGCTA
80432489 ATTTTTATTTTATAT
1 ATTTTTATTTT-TAT
80432504 ATTTTTATTTTTAT
1 ATTTTTATTTTTAT
*
80432518 A-TTTCATTTTTAT
1 ATTTTTATTTTTAT
80432531 TTATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 11 0.42
14 4 0.15
15 11 0.42
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (14 bp):
ATTTTTATTTTTAT
Found at i:80432546 original size:19 final size:20
Alignment explanation
Indices: 80432524--80432571 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
80432514 TTATATTTCA
*
80432524 TTTTTATTTA-TTATTAATG
1 TTTTTATTTATTTATCAATG
80432543 TTTTTATTTATTTATCAATG
1 TTTTTATTTATTTATCAATG
80432563 TTTTT-TTTA
1 TTTTTATTTA
80432572 AATCTAATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (20 bp):
TTTTTATTTATTTATCAATG
Found at i:80433052 original size:41 final size:41
Alignment explanation
Indices: 80433007--80433158 Score: 209
Period size: 41 Copynumber: 3.7 Consensus size: 41
80432997 ATTATATGAC
* *
80433007 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTACTCTGGT
1 TTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGGT
* * * *
80433048 TTTTAGTGGCACTTTGCCAAAAACGCCGCTATTGCTCTAGT
1 TTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGGT
*
80433089 TTTTAGCGGCGCTTTGA-CAAAAACGCAGCTATTGCTCTGG-
1 TTTTAGCGGCGCTTT-ACCAAAAACGCCGCTATTGCTCTGGT
*
80433129 TTTTAGCGGCGCTTTGCCAAAAACGCCGCT
1 TTTTAGCGGCGCTTTACCAAAAACGCCGCT
80433159 CATGTATGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
40 27 0.28
41 69 0.72
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (41 bp):
TTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGGT
Found at i:80434844 original size:58 final size:58
Alignment explanation
Indices: 80434752--80435098 Score: 313
Period size: 58 Copynumber: 6.0 Consensus size: 58
80434742 TGTGAGTCTG
* * *
80434752 CAAGCTGTTTTAAACTTAAGCAAATTTTCCAAAATAATCAGCTAGGAATATAAATCTA
1 CAAGCTGTTTTAAACTTAAGCATATTTTCTAAAATAATCAGCTGGGAATATAAATCTA
* * * * * *
80434810 CGAGCTGTTTTGAACTTAAGCATATTTTTTAAAATAATTAGTTGGGAATATAAATCTG
1 CAAGCTGTTTTAAACTTAAGCATATTTTCTAAAATAATCAGCTGGGAATATAAATCTA
* * * * * * * *
80434868 CAAGCTGTTATGAACTTCAA-CAAATTTTCAAGAAATTATTAGTTGGGAATATAAATCCA
1 CAAGCTGTTTTAAACTT-AAGCATATTTTCTA-AAATAATCAGCTGGGAATATAAATCTA
* * **
80434927 CAAGCTGTTTTGAACTTAAGCATATTTTCTAAAATAATCAACTAAGAATATAAATCTGA
1 CAAGCTGTTTTAAACTTAAGCATATTTTCTAAAATAATCAGCTGGGAATATAAATCT-A
* * * * * * * *
80434986 -GAGCTATTCTAAACTTAAACGA-ATTTTCCAAAATCATCAACTGGGAATATAAATCCA
1 CAAGCTGTTTTAAACTTAAGC-ATATTTTCTAAAATAATCAGCTGGGAATATAAATCTA
* * * * * * *
80435043 CAAGTTGTTCTAAAATTAAACATATTCTCTAAAATAATTAGTTGGGAATATAAATC
1 CAAGCTGTTTTAAACTTAAGCATATTTTCTAAAATAATCAGCTGGGAATATAAATC
80435099 CGTGAGCCGT
Statistics
Matches: 235, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
57 2 0.01
58 180 0.77
59 53 0.23
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (58 bp):
CAAGCTGTTTTAAACTTAAGCATATTTTCTAAAATAATCAGCTGGGAATATAAATCTA
Found at i:80435184 original size:70 final size:70
Alignment explanation
Indices: 80435107--80435890 Score: 637
Period size: 70 Copynumber: 11.2 Consensus size: 70
80435097 TCCGTGAGCC
* * * * * *
80435107 GTTTGGAGGCAGCGATATGGAATCAACAAGCCTTAAAATTACAGGTGGGAGCTTTTAATTCTCGC
1 GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCGC
80435172 TAACT
66 TAACT
* * * *
80435177 GTTTGGAGGCCA-CGATATGAAATCAGCGAGCTTTGCAATTACAGTTGGGAGCTTTTAACTATC-
1 GTTTGGAGG-CAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCG
* * *
80435240 ATTAGT
65 CTAACT
* **** * * * ** * * * * * *
80435246 AGTTTAGAGATTTCAACATGAAATCAGCAAGTGTTGGAATTACAACCGAGAGCTTTTAACTATTG
1 -GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCG
80435311 CTAACT
65 CTAACT
* * * * * * * *
80435317 GTTTAGAGGC-TCGATATGAAATCAACGAGTCTTGAAATTACAGCTAGGAGCATTTAGCTTTCGC
1 GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCGC
80435381 TAACT
66 TAACT
* * * * * * * *
80435386 GTTTGGAGGCCA-CAATATGAAATTAGCGAGCCTTGAAGTTACAACTAGAAGCTTTTAACTTTTG
1 GTTTGGAGG-CAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCG
80435450 CTAACT
65 CTAACT
** * * * * *
80435456 GTTTGGAGGTTGTGATATGAAATCAGTGAGCCTTGAAATTATAGCTGAGAGCTTTTAACTCTCAC
1 GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCGC
80435521 TAACT
66 TAACT
* * * * *
80435526 GTTTGGAGGCCA-CGATATGAAATCAGCAAGCTTTGAAATTATAGTTGAGAGCTTTTAACTCTCG
1 GTTTGGAGG-CAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCG
*
80435590 TTAACT
65 CTAACT
* * * * * * * *
80435596 GTTTGGAGGTCA-CAATATGAAATCAACAAGCTTTGAAATTACAACTGTGAGGTTTTAACTCTAG
1 GTTTGGAGG-CAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCG
80435660 CTAACT
65 CTAACT
* * * * * * * *
80435666 ATCTAGAGGCCGCGATATGAAATCAGCGAGCCTTGAAATTATAGTTGAGAGCTTTTAACTATCGC
1 GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCGC
80435731 TAAACCTTT
66 T-AA-C--T
* ** * * * *
80435740 GTTTGGAGGTC-GCGATATGAAATTAATGAGCCTTGAAATTACAACTGTGAGCTTTTAACTATTG
1 GTTTGGAGG-CAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCG
*
80435804 GTAACT
65 CTAACT
* * * *
80435810 ATTTGGAGGCCGCAATATGAAATCAGCGAGCCTTGAAATTACAGGTGGGAGCTTTTAACTCTCGC
1 GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCGC
80435875 TAACT
66 TAACT
* *
80435880 ATTTGAAGGCA
1 GTTTGGAGGCA
80435891 CATCATGATA
Statistics
Matches: 568, Mismatches: 131, Indels: 30
0.78 0.18 0.04
Matches are distributed among these distances:
69 58 0.10
70 445 0.78
71 7 0.01
72 2 0.00
73 2 0.00
74 53 0.09
75 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (70 bp):
GTTTGGAGGCAGCGATATGAAATCAGCGAGCCTTGAAATTACAGCTGGGAGCTTTTAACTCTCGC
TAACT
Found at i:80448953 original size:15 final size:15
Alignment explanation
Indices: 80448933--80448964 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80448923 TGATTGTAGA
*
80448933 TATTGAAATTTGAAC
1 TATTGAAATTCGAAC
80448948 TATTGAAATTCGAAC
1 TATTGAAATTCGAAC
80448963 TA
1 TA
80448965 GGAATGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (15 bp):
TATTGAAATTCGAAC
Found at i:80451141 original size:9 final size:9
Alignment explanation
Indices: 80451129--80451171 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
80451119 TCTCTTTAAA
80451129 CTCTCAATT
1 CTCTCAATT
*
80451138 CTCTCAACT
1 CTCTCAATT
80451147 C-CTTCAATT
1 CTC-TCAATT
80451156 CTCTCAATT
1 CTCTCAATT
*
80451165 TTCTCAA
1 CTCTCAA
80451172 CTTTTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 1 0.03
9 27 0.93
10 1 0.03
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (9 bp):
CTCTCAATT
Found at i:80453026 original size:50 final size:50
Alignment explanation
Indices: 80452964--80453192 Score: 232
Period size: 50 Copynumber: 4.6 Consensus size: 50
80452954 TATAAGAGTC
** * * *
80452964 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAAGATATGAAAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACCTCGACATATGAGAGCT
* * *
80453014 AGTGTAAGACCATGTCTGGGACATGGCATCAACAC-CGACAGATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCAAC-CTCGACATATGAGAGCT
* * *
80453064 AGTGTAAGACCATGTCTAGAACATGGCATCATCCTCGATATATGAGAG-T
1 AGTGTAAGACCATGTCTAGGACATGGCATCAACCTCGACATATGAGAGCT
* * * ** *
80453113 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGATGTGTGAG-GC-
1 -AGTGTAAGACCATGTCTAGGACATGGCATCAACCTCGACATATGAGAGCT
* **
80453162 AATGTAAGACCATGTCCGGGACATGGCATCA
1 AGTGTAAGACCATGTCTAGGACATGGCATCA
80453193 GTATCTTACC
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
48 28 0.19
49 2 0.01
50 120 0.79
51 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCAACCTCGACATATGAGAGCT
Found at i:80453107 original size:100 final size:100
Alignment explanation
Indices: 80452958--80453143 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 100
80452948 CCACATTATA
* * *
80452958 AGAGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAAGATATGAAAG-CTAGTGTAAG
1 AGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCAGCCTCAAGATATGAAAGTC-AGTGTAAG
80453022 ACCATGTCTGGGACATGGCATCAACACCGACAGATG
65 ACCATGTCTGGGACATGGCATCAACACCGACAGATG
* * * *
80453058 AGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCATCCTCGATATATGAGAGTCAGTGTAAGA
1 AGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCAGCCTCAAGATATGAAAGTCAGTGTAAGA
80453123 CCATGTCTGGGACATGGCATC
66 CCATGTCTGGGACATGGCATC
80453144 GACCTTGATG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
100 77 0.99
101 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (100 bp):
AGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCAGCCTCAAGATATGAAAGTCAGTGTAAGA
CCATGTCTGGGACATGGCATCAACACCGACAGATG
Found at i:80453620 original size:44 final size:44
Alignment explanation
Indices: 80453554--80453641 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
80453544 TGCAGTAGTC
*
80453554 CAACTTGGAAAATGCACAAAAAATAGTGGAATA-AGGGTTAAAGA
1 CAACTTGGAAAATACACAAAAAATAGTGGAA-AGAGGGTTAAAGA
*
80453598 CAACTTGGAAAATACACCAAAAATAGTGGAAAGAGGGTTAAAGA
1 CAACTTGGAAAATACACAAAAAATAGTGGAAAGAGGGTTAAAGA
80453642 TTGAATGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 1 0.02
44 40 0.98
ACGTcount: A:0.50, C:0.10, G:0.23, T:0.17
Consensus pattern (44 bp):
CAACTTGGAAAATACACAAAAAATAGTGGAAAGAGGGTTAAAGA
Found at i:80457287 original size:44 final size:44
Alignment explanation
Indices: 80457224--80457310 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
80457214 GCAGTAGTCC
80457224 AACTTGGAAAATACACAAAAAATAGT-GAACAAAGGGTTAAAGAA
1 AACTTGGAAAATACACAAAAAATAGTGGAA-AAAGGGTTAAAGAA
*
80457268 AACTTGGAAAATACACAAAAAATAGTGGAAAGAGGGTTAAAGA
1 AACTTGGAAAATACACAAAAAATAGTGGAAAAAGGGTTAAAGA
80457311 TTGAATGAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 38 0.93
45 3 0.07
ACGTcount: A:0.55, C:0.08, G:0.21, T:0.16
Consensus pattern (44 bp):
AACTTGGAAAATACACAAAAAATAGTGGAAAAAGGGTTAAAGAA
Found at i:80460756 original size:24 final size:24
Alignment explanation
Indices: 80460729--80460780 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
80460719 GAAGGCGATA
* *
80460729 AAGACGAAGCCGATAGTAGAGATG
1 AAGACGAAGACAATAGTAGAGATG
* * *
80460753 AAGATGAAGACAATGGTGGAGATG
1 AAGACGAAGACAATAGTAGAGATG
80460777 AAGA
1 AAGA
80460781 TGAGTACAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.35, T:0.13
Consensus pattern (24 bp):
AAGACGAAGACAATAGTAGAGATG
Found at i:80463615 original size:405 final size:405
Alignment explanation
Indices: 80462857--80463627 Score: 960
Period size: 405 Copynumber: 1.9 Consensus size: 405
80462847 CTAGCTACAG
* *
80462857 ATGTTGGCAATCAACATCGGGACGAGAATTTTGGGACTTGTTTTCACCATAGGTAGAATTATGTT
1 ATGTTGGCAATCAACATCGGGACGAGAATTTTGGGACTCGCTTTCACCATAGGTAGAATTATGTT
* * * * *
80462922 AGATATCATGTTGGAGTTTAGCCTCGGATGATCTTGGCTTACACCTATGAAGTATACCCATAAAG
66 AGATATCACGTCGGAGTCTAGCCTCGGATGATCCTGACTTACACCTATGAAGTATACCCATAAAG
* ** * * *
80462987 TTATGTTATTCGAAAAAACGAAGACCTTGGTTAGGTCACATTATGTTAGAAAATCGGGTGATCAC
131 TTATGTTATTAGAAAAAACGAAGACCTTAATCAGGTCACATTATGTTACAAAATCGAGTGATCAC
* * ** *
80463052 ATTGCATACTTACTTCAACACAAGTATGTGACCAAAATACTTCTTTATTGTCCACAAACTTGTCT
196 ATCGCATACTTACTTCAACACAAGTATATGACCAAAATACTTCTTTATCATCCACAAACTTATCT
* * *
80463117 TCTTCCAAAAAGATGTCATGATTTTCCATTTGTACCTTCCGTCACGCATTGCACATTTTCCCTCA
261 TCTTCCAAAAAGATGCCATGATTTTCCATTTGTACCTTCCGTCACACATTGCAAATTTTCCCTCA
* ** * *
80463182 AATTTTTTTGAACGGGATTTTGTGACGTGATAGTTCACGCCATCTTATAGTATGATGACGTGAAA
326 AATTTCTCCGAACGAGATTTTATGACGTGATAGTTCACGCCATCTTATAGTATGATGACGTGAAA
80463247 TCATACTGGCTATGA
391 TCATACTGGCTATGA
* *
80463262 ATGTTGGTAATCAACATCGGGATGAGAATTTTGGGACTCGCTTTCACCATAGGTAGAATTATGTT
1 ATGTTGGCAATCAACATCGGGACGAGAATTTTGGGACTCGCTTTCACCATAGGTAGAATTATGTT
* * * ** *
80463327 AGATTTCACGTCGGAGTCTAGCCTTGGATTATCCTGACTTACA-C-ATGCAAAGTATACGTATGA
66 AGATATCACGTCGGAGTCTAGCCTCGGATGATCCTGACTTACACCTATG--AAGTATACCCATAA
* * * * *
80463390 ATTTATGTTTTTAGAAAAAACGAATATCTTAATCAGGTTACATTATGTTACAAAATCGAGTGATC
129 AGTTATGTTATTAGAAAAAACGAAGACCTTAATCAGGTCACATTATGTTACAAAATCGAGTGATC
* * * * * *
80463455 ACATCGCGTACTTA-TTGTAACACAAGTATATAGACCAGAATACTTCTTTATCATTCA-GAAGTC
194 ACATCGCATACTTACTT-CAACACAAGTATAT-GACCAAAATACTTCTTTATCATCCACAAACT-
* * ** *
80463518 TATCTTCTTCCAAAATGATGCCATGATTTTCCATTTG-ATCTTTTGTCGCACATTGCATAATTTT
256 TATCTTCTTCCAAAAAGATGCCATGATTTTCCATTTGTACCTTCCGTCACACATTGCA-AATTTT
** * *
80463582 -CCTTGAATTTCTCCGAATGAGATTTTATGACGTGATAGTTTACGCC
320 CCCTCAAATTTCTCCGAACGAGATTTTATGACGTGATAGTTCACGCC
80463628 GTTCTTGAAA
Statistics
Matches: 306, Mismatches: 54, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
403 3 0.01
404 3 0.01
405 240 0.78
406 60 0.20
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (405 bp):
ATGTTGGCAATCAACATCGGGACGAGAATTTTGGGACTCGCTTTCACCATAGGTAGAATTATGTT
AGATATCACGTCGGAGTCTAGCCTCGGATGATCCTGACTTACACCTATGAAGTATACCCATAAAG
TTATGTTATTAGAAAAAACGAAGACCTTAATCAGGTCACATTATGTTACAAAATCGAGTGATCAC
ATCGCATACTTACTTCAACACAAGTATATGACCAAAATACTTCTTTATCATCCACAAACTTATCT
TCTTCCAAAAAGATGCCATGATTTTCCATTTGTACCTTCCGTCACACATTGCAAATTTTCCCTCA
AATTTCTCCGAACGAGATTTTATGACGTGATAGTTCACGCCATCTTATAGTATGATGACGTGAAA
TCATACTGGCTATGA
Found at i:80468623 original size:29 final size:29
Alignment explanation
Indices: 80468581--80468639 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
80468571 CATTATGACT
80468581 TAAAACTTTGTTAAAGATAGACTCCAATA
1 TAAAACTTTGTTAAAGATAGACTCCAATA
*
80468610 TAAAACTTTGTTAAAGATGGACTCCAATA
1 TAAAACTTTGTTAAAGATAGACTCCAATA
80468639 T
1 T
80468640 GGCATAGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (29 bp):
TAAAACTTTGTTAAAGATAGACTCCAATA
Found at i:80477307 original size:40 final size:40
Alignment explanation
Indices: 80477224--80477446 Score: 159
Period size: 40 Copynumber: 5.6 Consensus size: 40
80477214 TTGAATGCTG
* * * * *
80477224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* *
80477264 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
** * *
80477304 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * **
80477344 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * * *
80477384 TCCAGG-TTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCC-GGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
80477423 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
80477447 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 112 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:80477361 original size:80 final size:79
Alignment explanation
Indices: 80477224--80477448 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
80477214 TTGAATGCTG
* * * * * * *
80477224 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
*
80477288 TGTGCGAGATACTAAA
64 TGTGCAAGATACTAAA
* * *
80477304 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
80477369 GTGCAAGTTGTTAAA
65 GTGCAAGATACTAAA
* * * * * *
80477384 TCCAGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
80477449 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 36 0.30
80 81 0.67
81 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGATACTAAA
Found at i:80485325 original size:39 final size:40
Alignment explanation
Indices: 80485111--80485333 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
80485101 TTGAATGCTG
* * * * * *
80485111 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
80485151 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
80485191 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
80485231 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80485271 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
80485310 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80485334 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:80485353 original size:79 final size:80
Alignment explanation
Indices: 80485186--80485368 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
80485176 GTGCGAGATA
* * *
80485186 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
80485251 CATTCGTGCAAGTTG
66 CATTCGAACAAGGAG
* * * *
80485266 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
80485330 CATTTGAACGAGGAG
66 CATTCGAACAAGGAG
* *
80485345 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
80485369 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACAAGGAG
Found at i:80488756 original size:46 final size:45
Alignment explanation
Indices: 80488701--80488871 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 45
80488691 ATTGTGAGTT
* *
80488701 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-AACGAGAGCC
* * *
80488747 AGTGTAAGACCATGT-TCGGGACATAGCATTGG-CAGTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCT-GGGACAT-GCATCGGCCA-CAA-ACGAGAGCC
* * * *
80488795 AGTGTAAGACATGTCTGGGACATACATCAGCCTCGAAATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAACG-AGAGCC
80488841 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
80488872 TACGAGTTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
46 48 0.47
47 30 0.29
48 25 0.24
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAACGAGAGCC
Found at i:80488799 original size:48 final size:47
Alignment explanation
Indices: 80488700--80488914 Score: 144
Period size: 46 Copynumber: 4.6 Consensus size: 47
80488690 CATTGTGAGT
* **
80488700 TAGTGTAAGACATGTTTGGGACAT-GCATCGGCCACATTACGAGAGC
1 TAGTGTAAGACATGTTCGGGACATAGCATCGGCCACAAGACGAGAGC
* * *
80488746 CAGTGTAAGACCATGTTCGGGACATAGCATTGG-CAGTAAGACGAGAGC
1 TAGTGTAAGA-CATGTTCGGGACATAGCATCGGCCA-CAAGACGAGAGC
* * *
80488794 TAGTGTAAGACATG-TCTGGGACATA-CATCAGCCTCGAA-ATGTA-AGC
1 TAGTGTAAGACATGTTC-GGGACATAGCATCGGCCAC-AAGACG-AGAGC
* * * **
80488840 CAGTGTAAGACATG-TCTGGGACAT-GCATCGGCTACGAG-TTA-AGC
1 TAGTGTAAGACATGTTC-GGGACATAGCATCGGCCACAAGACGAGAGC
* * *
80488884 TAGTGTAAGACCATGTCCAGGACATGGCATC
1 TAGTGTAAGA-CATGTTCGGGACATAGCATC
80488915 AGCATCCTAT
Statistics
Matches: 136, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 13 0.10
45 12 0.09
46 56 0.41
47 31 0.23
48 24 0.18
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
TAGTGTAAGACATGTTCGGGACATAGCATCGGCCACAAGACGAGAGC
Found at i:80490447 original size:29 final size:30
Alignment explanation
Indices: 80490401--80490459 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
80490391 TTCCCGAGCC
* *
80490401 TAGGGGCAAAAGTGTAATTATACAAAAGTT
1 TAGGGGCAAAAATATAATTATACAAAAGTT
* *
80490431 TAGGGG-AAAAATATAATTTTGCAAAAGTT
1 TAGGGGCAAAAATATAATTATACAAAAGTT
80490460 CATATTAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATACAAAAGTT
Found at i:80499145 original size:19 final size:19
Alignment explanation
Indices: 80499121--80499158 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
80499111 TTAAAATAAA
80499121 TTTTATTAA-GTTTTTATAG
1 TTTTA-TAATGTTTTTATAG
80499140 TTTTATAATGTTTTTATAG
1 TTTTATAATGTTTTTATAG
80499159 AAAAAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (19 bp):
TTTTATAATGTTTTTATAG
Found at i:80504021 original size:3 final size:3
Alignment explanation
Indices: 80504013--80504055 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
80504003 AAACAACGGT
80504013 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
80504056 ACAAAAAANN
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:80515783 original size:39 final size:40
Alignment explanation
Indices: 80515579--80515801 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
80515569 TTGAATGCTG
* * * * * *
80515579 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * * *
80515619 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAGA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80515659 TCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
80515699 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80515739 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
80515778 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80515802 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:80515821 original size:79 final size:80
Alignment explanation
Indices: 80515658--80515836 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
80515648 GAGATACTAG
* * * *
80515658 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
80515723 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
80515738 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
80515802 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
80515817 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
80515837 TACGTGATTT
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 23 0.28
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:80523583 original size:40 final size:40
Alignment explanation
Indices: 80523451--80523672 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
80523441 TTGAATGCTG
* * * * *
80523451 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
80523491 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80523530 TCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
80523570 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
80523610 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80523649 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80523673 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 64 0.41
40 85 0.54
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:80523587 original size:79 final size:79
Alignment explanation
Indices: 80523451--80523674 Score: 236
Period size: 79 Copynumber: 2.8 Consensus size: 79
80523441 TTGAATGCTG
* * * * * * *
80523451 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGATAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
80523515 TGTGCGAGATACT-AA
64 TGTGCGAGATACTAAA
* * *
80523530 TCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGATAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
80523595 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * * *
80523610 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGATAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
80523675 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.01
79 92 0.76
80 28 0.23
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGATAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:80523692 original size:79 final size:80
Alignment explanation
Indices: 80523528--80523707 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 80
80523518 GCGAGATACT
* * * *
80523528 AATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** ** *
80523593 TCGTGCGAGTTGTTA
66 TCGAACGAGGAGCTA
* * *
80523608 AATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
*
80523672 TTGAACGAGGAGCTA
66 TCGAACGAGGAGCTA
* *
80523687 TATCC-GGTTAAATCCCGAAGG
1 AATCCGGGTTAAGTCCCGAAGG
80523708 TACGTGATTT
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
TCGAACGAGGAGCTA
Found at i:80525087 original size:1 final size:1
Alignment explanation
Indices: 80525081--80525120 Score: 80
Period size: 1 Copynumber: 40.0 Consensus size: 1
80525071 TTATTAATGA
80525081 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
80525121 GAAGATTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:80526886 original size:46 final size:45
Alignment explanation
Indices: 80526831--80527001 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 45
80526821 ATTGTGAGTT
* *
80526831 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-AACGAGAGCC
* * *
80526877 AGTGTAAGACCATGT-TCGGGACATAGCATTGG-CAGTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCT-GGGACAT-GCATCGGCCA-CAA-ACGAGAGCC
* * * *
80526925 AGTGTAAGACATGTCTGGGACATACATCAGCCTCGAAATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAACG-AGAGCC
80526971 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
80527002 TACGAGTTAA
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
46 48 0.47
47 30 0.29
48 25 0.24
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAACGAGAGCC
Found at i:80526929 original size:48 final size:47
Alignment explanation
Indices: 80526830--80527044 Score: 144
Period size: 46 Copynumber: 4.6 Consensus size: 47
80526820 CATTGTGAGT
* **
80526830 TAGTGTAAGACATGTTTGGGACAT-GCATCGGCCACATTACGAGAGC
1 TAGTGTAAGACATGTTCGGGACATAGCATCGGCCACAAGACGAGAGC
* * *
80526876 CAGTGTAAGACCATGTTCGGGACATAGCATTGG-CAGTAAGACGAGAGC
1 TAGTGTAAGA-CATGTTCGGGACATAGCATCGGCCA-CAAGACGAGAGC
* * *
80526924 TAGTGTAAGACATG-TCTGGGACATA-CATCAGCCTCGAA-ATGTA-AGC
1 TAGTGTAAGACATGTTC-GGGACATAGCATCGGCCAC-AAGACG-AGAGC
* * * **
80526970 CAGTGTAAGACATG-TCTGGGACAT-GCATCGGCTACGAG-TTA-AGC
1 TAGTGTAAGACATGTTC-GGGACATAGCATCGGCCACAAGACGAGAGC
* * *
80527014 TAGTGTAAGACCATGTCCAGGACATGGCATC
1 TAGTGTAAGA-CATGTTCGGGACATAGCATC
80527045 AGCATCCTAT
Statistics
Matches: 136, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 13 0.10
45 12 0.09
46 56 0.41
47 31 0.23
48 24 0.18
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
TAGTGTAAGACATGTTCGGGACATAGCATCGGCCACAAGACGAGAGC
Found at i:80528577 original size:29 final size:30
Alignment explanation
Indices: 80528531--80528589 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
80528521 TTCCCGAGCC
* *
80528531 TAGGGGCAAAAGTGTAATTATACAAAAGTT
1 TAGGGGCAAAAATATAATTATACAAAAGTT
* *
80528561 TAGGGG-AAAAATATAATTTTGCAAAAGTT
1 TAGGGGCAAAAATATAATTATACAAAAGTT
80528590 CATATTAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATACAAAAGTT
Found at i:80539100 original size:4 final size:4
Alignment explanation
Indices: 80539091--80539145 Score: 110
Period size: 4 Copynumber: 13.8 Consensus size: 4
80539081 TGCATTGGAC
80539091 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
80539139 ATAG ATA
1 ATAG ATA
80539146 CCTCAAGGAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:80542524 original size:3 final size:3
Alignment explanation
Indices: 80542516--80542558 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
80542506 AACAACGGGT
80542516 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
80542559 ACAAAAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:80544203 original size:64 final size:65
Alignment explanation
Indices: 80544078--80544202 Score: 166
Period size: 64 Copynumber: 2.0 Consensus size: 65
80544068 TAAAATTTAT
** * *
80544078 AAAAATATGTAAGTACGTGTTTTGTTTATTATGATTTTTTTTACATAATTATGAATTTTTTTAGA
1 AAAAATATGTAAGTACGTGTTTTGTTTATTATGATAATGTTTAAATAATTATGAATTTTTTTAGA
* *
80544143 AAAAAT-TGTAAGTATGTGTTTTGTTTATTAT-ATAATGTTTAGAAT-TTTATGAATTTTTTT
1 AAAAATATGTAAGTACGTGTTTTGTTTATTATGATAATGTTTA-AATAATTATGAATTTTTTT
80544203 TTTACTTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
63 21 0.40
64 26 0.49
65 6 0.11
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.54
Consensus pattern (65 bp):
AAAAATATGTAAGTACGTGTTTTGTTTATTATGATAATGTTTAAATAATTATGAATTTTTTTAGA
Found at i:80544430 original size:50 final size:50
Alignment explanation
Indices: 80544371--80544469 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
80544361 CAAAATGGAT
80544371 ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTAC
1 ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTAC
*
80544421 ATTAACCCTTGAATTAATGTCCTACCTCACTTTTTCGTTAAGGTTGTTA
1 ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTA
80544470 AGACAATTAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.41
Consensus pattern (50 bp):
ATTAACCCTTGAATTAATGTCCCACCTCACTTTTTCGTTAAGGTTGTTAC
Found at i:80547461 original size:20 final size:22
Alignment explanation
Indices: 80547433--80547473 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
80547423 AAATATCTCA
80547433 ATTAGTTTAATA-ATAAAAATT
1 ATTAGTTTAATATATAAAAATT
80547454 ATTA-TTTAATATATAAAAAT
1 ATTAGTTTAATATATAAAAAT
80547474 CTAACTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
ATTAGTTTAATATATAAAAATT
Found at i:80555788 original size:39 final size:39
Alignment explanation
Indices: 80555718--80555833 Score: 117
Period size: 39 Copynumber: 3.0 Consensus size: 39
80555708 TCACATATAG
* * * * *
80555718 TCACCTAACATACAAGCATAAATCACCATACTCATATAA
1 TCACATAACATTCAAGCATATATCACAATACTCATAAAA
* * * * * *
80555757 TCTCTTAACGTTTAAGCATATGTCACAATACTCGTAAAA
1 TCACATAACATTCAAGCATATATCACAATACTCATAAAA
*
80555796 TCACATAACATTCAAGCATATACCACAATACTC-TAAAA
1 TCACATAACATTCAAGCATATATCACAATACTCATAAAA
80555834 CGTCTTTATA
Statistics
Matches: 61, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
38 5 0.08
39 56 0.92
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (39 bp):
TCACATAACATTCAAGCATATATCACAATACTCATAAAA
Found at i:80561233 original size:20 final size:20
Alignment explanation
Indices: 80561200--80561244 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
80561190 AATCAAAATG
80561200 TTTTTATTACTAA-TTATATT
1 TTTTTATTACTAATTTA-ATT
**
80561220 TTTTTATTTTTAATTTAATT
1 TTTTTATTACTAATTTAATT
80561240 TTTTT
1 TTTTT
80561245 TAACATTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTATTACTAATTTAATT
Found at i:80568503 original size:22 final size:22
Alignment explanation
Indices: 80568472--80568515 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
80568462 AAAAGTTTGT
80568472 ATGCTAATTCATGAAATCAAAG
1 ATGCTAATTCATGAAATCAAAG
*
80568494 ATGCTCATTCATGAAATCAAAG
1 ATGCTAATTCATGAAATCAAAG
80568516 CTACTAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (22 bp):
ATGCTAATTCATGAAATCAAAG
Found at i:80569856 original size:3 final size:3
Alignment explanation
Indices: 80569848--80569873 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
80569838 GGGTGAGTAT
80569848 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
80569874 AATTTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:80577321 original size:47 final size:47
Alignment explanation
Indices: 80577256--80577707 Score: 600
Period size: 47 Copynumber: 9.4 Consensus size: 47
80577246 CAGCCAAGAG
*
80577256 AGTGTATATATGTGATAAGGCCTAAT-GACCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATAG-CCGATGTGATGAATGTGAA
* * *
80577303 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80577350 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80577399 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
80577450 AGTGTATGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATA--TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
80577501 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80577548 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80577595 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
80577642 AGTGTATATATGTGACAAGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80577689 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
80577708 TCCCGAAAGG
Statistics
Matches: 371, Mismatches: 23, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
47 233 0.63
48 1 0.00
49 48 0.13
51 85 0.23
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Done.