Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 253 of 318
Found at i:80577882 original size:37 final size:37
Alignment explanation
Indices: 80577826--80577904 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80577816 CCGAGCTCTA
* * *
80577826 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80577863 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80577900 AAGAC
1 AAGAC
80577905 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80579801 original size:43 final size:43
Alignment explanation
Indices: 80579754--80579942 Score: 369
Period size: 43 Copynumber: 4.4 Consensus size: 43
80579744 TTGGTTTTCA
80579754 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80579797 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
80579840 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80579883 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80579926 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
80579943 TTGAAATGCA
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:80579991 original size:28 final size:29
Alignment explanation
Indices: 80579924--80579995 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
80579914 GTTGTGAGAT
* *
80579924 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
80579953 TGGCACTAAGTGTG-GAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
80579981 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
80579996 ATGGTTGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 5 0.13
28 19 0.50
29 14 0.37
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:80580432 original size:40 final size:40
Alignment explanation
Indices: 80580388--80580627 Score: 318
Period size: 40 Copynumber: 6.0 Consensus size: 40
80580378 GAGTTACTAA
80580388 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
80580428 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
80580468 ATCTGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
80580508 ATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
80580548 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
80580588 GTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
80580628 GTATTCGGGC
Statistics
Matches: 174, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 174 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:80580446 original size:80 final size:80
Alignment explanation
Indices: 80580309--80580625 Score: 318
Period size: 80 Copynumber: 4.0 Consensus size: 80
80580299 TTGAATGATG
** * *
80580309 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAA-AGC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * *
80580370 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TATA
*
80580389 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* *
80580454 CATGCTAGTGATGTA
66 CGTGCTAGTGATATA
* * * * *
80580469 TCTGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
80580534 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * * * *
80580549 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* *
80580614 CATGCTGGTGAT
66 CGTGCTAGTGAT
80580626 GTGTATTCGG
Statistics
Matches: 199, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 172 0.86
81 20 0.10
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:80584030 original size:47 final size:47
Alignment explanation
Indices: 80583965--80584416 Score: 600
Period size: 47 Copynumber: 9.4 Consensus size: 47
80583955 CAGCCAAGAG
*
80583965 AGTGTATATATGTGATAAGGCCTAAT-GACCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATAG-CCGATGTGATGAATGTGAA
* * *
80584012 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80584059 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80584108 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
80584159 AGTGTATGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATA--TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
80584210 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80584257 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80584304 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
80584351 AGTGTATATATGTGACAAGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80584398 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
80584417 TCCCGAAAGG
Statistics
Matches: 371, Mismatches: 23, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
47 233 0.63
48 1 0.00
49 48 0.13
51 85 0.23
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:80584591 original size:37 final size:37
Alignment explanation
Indices: 80584535--80584613 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80584525 CCGAGCTCTA
* * *
80584535 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80584572 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80584609 AAGAC
1 AAGAC
80584614 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80586510 original size:43 final size:43
Alignment explanation
Indices: 80586463--80586651 Score: 369
Period size: 43 Copynumber: 4.4 Consensus size: 43
80586453 TTGGTTTTCA
80586463 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80586506 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
80586549 GCACTAAGTGTGCGGGCAATAAGTGTTCGCGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80586592 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
80586635 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
80586652 TTGAAATGCA
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:80586700 original size:28 final size:29
Alignment explanation
Indices: 80586633--80586704 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
80586623 GTTGTGAGAT
* *
80586633 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
80586662 TGGCACTAAGTGTG-GAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
80586690 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
80586705 ATGGTTGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 5 0.13
28 19 0.50
29 14 0.37
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:80587141 original size:40 final size:40
Alignment explanation
Indices: 80587097--80587335 Score: 309
Period size: 40 Copynumber: 6.0 Consensus size: 40
80587087 GAGTTACTAA
80587097 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
80587137 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
80587177 ATCTGGGCTAAGT-CCGAGGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
80587216 ATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
80587256 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
80587296 GTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
80587336 GTATTCGGGC
Statistics
Matches: 173, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 36 0.21
40 137 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:80587155 original size:80 final size:80
Alignment explanation
Indices: 80587018--80587333 Score: 309
Period size: 80 Copynumber: 4.0 Consensus size: 80
80587008 TTGAATGATG
** * *
80587018 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAA-AGC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * *
80587079 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TATA
*
80587098 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* *
80587163 CATGCTAGTGATGTA
66 CGTGCTAGTGATATA
* * * * *
80587178 TCTGGGCTAAGT-CCGAGGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
80587242 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * * * *
80587257 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* *
80587322 CATGCTGGTGAT
66 CGTGCTAGTGAT
80587334 GTGTATTCGG
Statistics
Matches: 197, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
79 71 0.36
80 100 0.51
81 20 0.10
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:80587223 original size:79 final size:79
Alignment explanation
Indices: 80587097--80587335 Score: 293
Period size: 79 Copynumber: 3.0 Consensus size: 79
80587087 GAGTTACTAA
*
80587097 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTCCCGAAGAGCAT
80587162 TCATGCTAGTGATGT
65 TCATGCTAGTGATGT
* * *
80587177 ATCTGGGCTAAGTCCGAGGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTTCCGAAGAGCATT
1 ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTCCCGAAGAGCATT
* *
80587242 CGTGCTAGTGATAT
66 CATGCTAGTGATGT
* ** * * * *
80587256 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTG-T-TATGTCCGGGCTAGGTCCCGAAGAGC
1 ATCCGGGCT-AAGTCCGAAGAGCATTCATGCTAGTGATGTAT-T-CGGGCTAAGTCCCGAAGAGC
* *
80587319 AATCATGCTGGTGATGT
63 ATTCATGCTAGTGATGT
80587336 GTATTCGGGC
Statistics
Matches: 136, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
78 3 0.02
79 70 0.51
80 63 0.46
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATTCGGGCTAAGTCCCGAAGAGCATT
CATGCTAGTGATGT
Found at i:80587248 original size:119 final size:121
Alignment explanation
Indices: 80587100--80587345 Score: 316
Period size: 119 Copynumber: 2.0 Consensus size: 121
80587090 TTACTAAATC
* ** *
80587100 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCATTCA
* * * *
80587165 TGCTAGTGATGTATCTGGGCTAAGT-CCGAGGAGCATTCATGCTAGTGA-TGTATT
66 TGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGAGTGTATT
* * * *
80587219 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATTCG
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCATTCA
* * * * *
80587284 TGCTGGTGTTATGTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGTGTATT
66 TGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGA-GTGTATT
80587341 CGGGC
1 CGGGC
80587346 CTTTGTGCCT
Statistics
Matches: 107, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
119 76 0.71
120 20 0.19
122 11 0.10
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (121 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCATTCA
TGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGTGAGTGTATT
Found at i:80590725 original size:47 final size:47
Alignment explanation
Indices: 80590672--80591072 Score: 595
Period size: 47 Copynumber: 8.3 Consensus size: 47
80590662 CAGCCAAGAG
*
80590672 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
80590719 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80590766 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80590815 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
80590866 AGTGTATGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATA--TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80590917 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80590964 AGTGTATATGTGTGATAAGGCCTAATAGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
80591011 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80591058 AGTGTATATGTGTGA
1 AGTGTATATATGTGA
80591073 ATGGATGGTG
Statistics
Matches: 333, Mismatches: 11, Indels: 20
0.91 0.03 0.05
Matches are distributed among these distances:
47 196 0.59
49 48 0.14
51 85 0.26
53 4 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:80591015 original size:94 final size:94
Alignment explanation
Indices: 80590672--80591343 Score: 941
Period size: 94 Copynumber: 7.2 Consensus size: 94
80590662 CAGCCAAGAG
* * * * *
80590672 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTAATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* *
80590737 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATAGCCGACGTGATGAATGTGAA
* * *
80590766 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATG
1 AGTGTA--TATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATGTG
* *
80590831 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
60 TGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
80590866 AGTGTATGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
1 A--G--TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
80590931 ATAAGGCCTAATAGCCGACGTGATGAATGTGAA
62 ATAAGGCCTAATAGCCGACGTGATGAATGTGAA
*
80590964 AGTGTATATGTGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
80591029 GGCCTAATAGCCGACGTGATGAATGTGAA
66 GGCCTAATAGCCGACGTGATGAATGTGAA
*
80591058 AGTGTATATGTGTGA-ATGG----AT----G--GTGATG--TGATG------TATATGTGTGATA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATG-TGAAAGTGTATATGTGTGATA
80591104 AGGCCTAATAGCCGACGTGATGAATGTGAA
65 AGGCCTAATAGCCGACGTGATGAATGTGAA
*
80591134 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
80591199 GGCCTAATAGCCGACGTGATGAATGTGAA
66 GGCCTAATAGCCGACGTGATGAATGTGAA
*
80591228 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
*
80591293 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAATAGCCGACGTGATGAATGTGAA
* *
80591322 AGTGTATATATGTGACAAGGCC
1 AGTGTATATGTGTGATAAGGCC
80591344 GAGTGGCCAA
Statistics
Matches: 534, Mismatches: 14, Indels: 60
0.88 0.02 0.10
Matches are distributed among these distances:
76 58 0.11
77 3 0.01
81 4 0.01
82 2 0.00
83 5 0.01
85 2 0.00
87 6 0.01
88 2 0.00
89 4 0.01
93 3 0.01
94 268 0.50
96 43 0.08
98 44 0.08
100 45 0.08
102 41 0.08
104 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATAGCCGACGTGATGAATGTGAA
Found at i:80591062 original size:141 final size:141
Alignment explanation
Indices: 80590672--80591387 Score: 937
Period size: 141 Copynumber: 5.1 Consensus size: 141
80590662 CAGCCAAGAG
* * * *
80590672 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTAATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* * *
80590737 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATAGCCGACG
80590802 TGATGAATGTGAA
129 TGATGAATGTGAA
*
80590815 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATG
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATG
*
80590880 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
58 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
80590945 CCGACGTGATGAATGTGAA
123 CCGACGTGATGAATGTGAA
* *
80590964 AGTGTATATGTGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
*
80591029 GGCCTAATAGCCGACGTGATGAATGTGAAAGTG--TATATGTG-T---G---AAT-G--GA--TG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTG
*
80591080 GTG-ATGTG-A
131 ATGAATGTGAA
* * * * *
80591089 TGTATATGTG--TGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* *
80591152 GGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTG
80591217 ATGAATGTGAA
131 ATGAATGTGAA
* *
80591228 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* * * * * *
80591293 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTA
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTG
*
80591358 ATGGATGTGAA
131 ATGAATGTGAA
* *
80591369 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
80591388 TCCCGAAAGG
Statistics
Matches: 512, Mismatches: 35, Indels: 54
0.85 0.06 0.09
Matches are distributed among these distances:
123 84 0.16
125 15 0.03
126 6 0.01
127 4 0.01
129 3 0.01
131 1 0.00
132 6 0.01
133 1 0.00
135 3 0.01
137 4 0.01
138 6 0.01
139 15 0.03
141 184 0.36
143 2 0.00
145 44 0.09
147 47 0.09
149 40 0.08
151 47 0.09
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTG
ATGAATGTGAA
Found at i:80591141 original size:47 final size:47
Alignment explanation
Indices: 80591089--80591387 Score: 490
Period size: 47 Copynumber: 6.4 Consensus size: 47
80591079 GGTGATGTGA
80591089 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
1 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
80591136 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
1 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
80591183 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
1 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
80591230 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
1 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
*
80591277 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
* * * * * * * *
80591324 TGTATATATGTGACAAGGCCGAGTGGCCAACGTAATGGATGTGAAAG
1 TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
* **
80591371 TGCATAAATGTGATAAG
1 TGTATATGTGTGATAAG
80591388 TCCCGAAAGG
Statistics
Matches: 239, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 239 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAG
Found at i:80591201 original size:170 final size:180
Alignment explanation
Indices: 80590706--80591387 Score: 808
Period size: 170 Copynumber: 3.7 Consensus size: 180
80590696 ATGGCCGATG
* * * * *
80590706 TGATGAATGTGAAAGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 TGATGAATGTG-AAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGT
* * * *
80590771 ATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATA
65 A--TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAA--G--TGTATATGTGTGATA
* *
80590836 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGTGATAAGGCCTAATAGCCG
124 AGGCCTAATAGCCGACGTGATGAATGTGAAA--G--TGTATA-GTGTGAT-A-G-C-AATAG-CG
*
80590901 ATG
179 A-C
80590904 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGT
1 TGATGAATGTG-AAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGT
**
80590969 ATATGTGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
65 ATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
80591034 AATAGCCGACGTGATGAATGTGAAAGTGTATA-TGTG-T-G-AAT-G-GA-
130 AATAGCCGACGTGATGAATGTGAAAGTGTATAGTGTGATAGCAATAGCGAC
*
80591078 TGGTG-ATGTG-A-TGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
1 TGATGAATGTGAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
80591140 TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
66 TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
80591205 ATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
131 ATAGCCGACGTGATGAATGTGAAAGTGTATA-GTGTGAT-A-G-C-AATAG-CGAC
*
80591261 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 -TGATGAATGTG-AAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
* * * * * * * * * **
80591326 TATATATGTGACAAGGCCGAGTGGCCAACGTAATGGATGTGAAAGTGCATAAATGTGATAAG
64 TATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
80591388 TCCCGAAAGG
Statistics
Matches: 439, Mismatches: 27, Indels: 46
0.86 0.05 0.09
Matches are distributed among these distances:
170 145 0.33
171 1 0.00
172 4 0.01
173 6 0.01
174 4 0.01
176 3 0.01
178 1 0.00
179 6 0.01
180 1 0.00
182 3 0.01
184 4 0.01
185 6 0.01
186 4 0.01
187 1 0.00
188 105 0.24
190 1 0.00
192 43 0.10
194 1 0.00
196 39 0.09
198 61 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (180 bp):
TGATGAATGTGAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTA
TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
ATAGCCGACGTGATGAATGTGAAAGTGTATAGTGTGATAGCAATAGCGAC
Found at i:80591246 original size:217 final size:217
Alignment explanation
Indices: 80590871--80591289 Score: 811
Period size: 217 Copynumber: 1.9 Consensus size: 217
80590861 GTGAAAGTGT
*
80590871 ATGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 ATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
80590936 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATATGA
66 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACATGA
80591001 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
131 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
80591066 TGTGTGAATGGATGGTGATGTG
196 TGTGTGAATGGATGGTGATGTG
80591088 ATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 ATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
80591153 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGA
66 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACATGA
80591218 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
131 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
80591283 TGTGTGA
196 TGTGTGA
80591290 TAAGGCCTAA
Statistics
Matches: 199, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
217 199 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (217 bp):
ATGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACATGA
TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
TGTGTGAATGGATGGTGATGTG
Found at i:80591562 original size:37 final size:37
Alignment explanation
Indices: 80591506--80591584 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
80591496 CCGAGCTCTA
* *
80591506 AAGACCCGATGACTACGTGT-GAGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGA-GATTATGTCCGGGT
*
80591543 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80591580 AAGAC
1 AAGAC
80591585 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80593245 original size:50 final size:49
Alignment explanation
Indices: 80593123--80593395 Score: 262
Period size: 50 Copynumber: 5.5 Consensus size: 49
80593113 TATGAGTGCT
* * * * **
80593123 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGGTAAATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGACATC-GC-CTCGATACGTGAGAGCC
* * * * * *
80593173 -TTGTAAGACCATATTTGGGACATGACATCGGCTGCAATATGCGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGACATCGCCT-CGATACGTGAGAGCC
** * * *
80593222 AGTGTAAGACCATGTCCGGGACATGGCATCGGCCTCGATATGTGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGACATC-GCCTCGATACGTGAGAGCC
* * *
80593272 AGTGTAAGACCATATTTGGGACATGACATCGACCTTGATACGTGAGGGCC
1 AGTGTAAGACCATGTTTGGGACATGACATCG-CCTCGATACGTGAGAGCC
* * *
80593322 AGTGTAAGATCATGTTTGGGACATGGCATCAGCCTCGATACGTGAGAGTC
1 AGTGTAAGACCATGTTTGGGACATGACATC-GCCTCGATACGTGAGAGCC
*
80593372 AGTGTAAGACCATGTCTGGGACAT
1 AGTGTAAGACCATGTTTGGGACAT
80593396 AGCATCGACT
Statistics
Matches: 181, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 35 0.19
50 140 0.77
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTTTGGGACATGACATCGCCTCGATACGTGAGAGCC
Found at i:80593327 original size:100 final size:100
Alignment explanation
Indices: 80593123--80593404 Score: 326
Period size: 100 Copynumber: 2.8 Consensus size: 100
80593113 TATGAGTGCT
* * *
80593123 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGGTAAATGAGAGCCT--TGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGATAAGTGAGAG-CTAGTGTAAGACCAT
* *
80593185 ATTTGGGACATGACATCG-GCTGCAATATGCGAGAGCC
64 ATTTGGGACATGACATCGACCTG-AATACGCGAGAGCC
* *
80593222 AGTGTAAGACCATGTCCGGGACATGGCATCGGCCTCGATATGTGAGAGCTAGTGTAAGACCATAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAAGTGAGAGCTAGTGTAAGACCATAT
* *
80593287 TTGGGACATGACATCGACCTTG-ATACGTGAGGGCC
66 TTGGGACATGACATCGACC-TGAATACGCGAGAGCC
* * * * *
80593322 AGTGTAAGATCATGTTTGGGACATGGCATCAGCCTCGATACGTGAGAG-TCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAAGTGAGAGCT-AGTGTAAGACCATA
*
80593386 TCTGGGACAT-AGCATCGAC
65 TTTGGGACATGA-CATCGAC
80593405 TTTTATGTAT
Statistics
Matches: 160, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
98 3 0.02
99 43 0.27
100 111 0.69
101 1 0.01
102 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (100 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAAGTGAGAGCTAGTGTAAGACCATAT
TTGGGACATGACATCGACCTGAATACGCGAGAGCC
Found at i:80601250 original size:13 final size:12
Alignment explanation
Indices: 80601227--80601289 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
80601217 AATAATTTTA
80601227 TATTAAAATTAT
1 TATTAAAATTAT
80601239 TATT-AAA-TAT
1 TATTAAAATTAT
80601249 TATTAATAATTA-
1 TATTAA-AATTAT
*
80601261 TATTAAGAA-TGT
1 TATTAA-AATTAT
80601273 TATT-AAATTAT
1 TATTAAAATTAT
80601284 ATATTA
1 -TATTA
80601290 TTTTATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:80601254 original size:22 final size:23
Alignment explanation
Indices: 80601227--80601289 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
80601217 AATAATTTTA
80601227 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
80601249 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
80601273 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
80601290 TTTTATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:80601296 original size:34 final size:33
Alignment explanation
Indices: 80601219--80601296 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
80601209 TTCTTAATAA
80601219 TAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATTTTATATTAAAATTATTATTAAATATTAT
* *
80601252 TAATAATTATATTAAGAA-TGTTATTAAATTATATAT
1 TAAT-TTTATATTAA-AATTATTATTAAA-TAT-TAT
80601288 T-ATTTTATA
1 TAATTTTATA
80601297 AAATTGTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
33 4 0.11
34 23 0.61
35 7 0.18
36 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (33 bp):
TAATTTTATATTAAAATTATTATTAAATATTAT
Found at i:80601368 original size:61 final size:58
Alignment explanation
Indices: 80601252--80601385 Score: 139
Period size: 61 Copynumber: 2.3 Consensus size: 58
80601242 TAAATATTAT
* * *
80601252 TAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATAAAATTGTATTTAA
1 TAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATAAAATTATATTTAA
* *
80601310 TAATAATTATGTTAA-AATATGATTAAATTATTTATTTTTATTTTTATTAAAA-TATATTTAA
1 TAATAATTATATTAAGAATATGATTAAATTA--TA-TATTA-TTTTA-TAAAATTATATTTAA
*
80601371 CAATAATCT-TATTAA
1 TAATAAT-TATATTAA
80601386 AACTTAATAA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
57 13 0.21
58 14 0.22
59 2 0.03
60 4 0.06
61 24 0.38
62 6 0.10
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (58 bp):
TAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATAAAATTATATTTAA
Found at i:80601568 original size:46 final size:46
Alignment explanation
Indices: 80601473--80601611 Score: 237
Period size: 46 Copynumber: 3.1 Consensus size: 46
80601463 TATTACATCT
***
80601473 ATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
80601517 ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
80601563 ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
80601609 ATT
1 ATT
80601612 ACAGTTCTAT
Statistics
Matches: 90, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
44 23 0.26
45 2 0.02
46 65 0.72
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTCC
Found at i:80601614 original size:16 final size:16
Alignment explanation
Indices: 80601593--80601679 Score: 120
Period size: 16 Copynumber: 5.4 Consensus size: 16
80601583 TGAATTACTG
80601593 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
80601609 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
* *
80601625 ATTACAGTTCTATTTC
1 ATTACAGCTCTATTCC
* *
80601641 ATTACATCTCTATTCA
1 ATTACAGCTCTATTCC
*
80601657 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
80601673 ATTACAG
1 ATTACAG
80601680 TGAAACAAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 62 1.00
ACGTcount: A:0.28, C:0.26, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:80602991 original size:34 final size:34
Alignment explanation
Indices: 80602948--80603015 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
80602938 ACAAATATAA
* *
80602948 CATAATCACAAGATAT-CAATTTAAGTAGAGAAAC
1 CATAATCACAACATATGC-ATTAAAGTAGAGAAAC
80602982 CATAATCACAACATATGCATTAAAGTAGAGAAAC
1 CATAATCACAACATATGCATTAAAGTAGAGAAAC
80603016 AACTGCAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (34 bp):
CATAATCACAACATATGCATTAAAGTAGAGAAAC
Found at i:80617072 original size:26 final size:26
Alignment explanation
Indices: 80617043--80617094 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
80617033 AGTTGTAAAG
*
80617043 AGAAAATTATCTGAAGAGAT-TATTTT
1 AGAAAATT-TCTAAAGAGATATATTTT
*
80617069 AGAAAATTTCTAAAGATATATATTTT
1 AGAAAATTTCTAAAGAGATATATTTT
80617095 TTATTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (26 bp):
AGAAAATTTCTAAAGAGATATATTTT
Found at i:80617458 original size:43 final size:43
Alignment explanation
Indices: 80617410--80617493 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
80617400 TGCCCTCATA
* * *
80617410 GTGCATCATTGAGTAAGCCGAAGCAATTATAATGGCACACAAG
1 GTGCATCATCGAGCAAGCCGAAGCAATTATAATGCCACACAAG
* *
80617453 GTGCATCATCGAGCAAGCTGAAGCAATTATATTGCCACACA
1 GTGCATCATCGAGCAAGCCGAAGCAATTATAATGCCACACA
80617494 TAGTGTTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (43 bp):
GTGCATCATCGAGCAAGCCGAAGCAATTATAATGCCACACAAG
Found at i:80623199 original size:57 final size:58
Alignment explanation
Indices: 80623100--80623211 Score: 151
Period size: 57 Copynumber: 1.9 Consensus size: 58
80623090 AGAAATGGTG
*
80623100 AAAATAGAGAAATGGGTAATATTTAGAAATGATATTAATTTTCTCTAAAATGAAAAAC
1 AAAATAGAGAAATGGGTAATATTTAGAAATGATATTAATTTTCTCCAAAATGAAAAAC
*
80623158 AAAATAGAGAAAT-GG-AATTATTTTA-AAATGA-ATGTAGTTTTCTCCAAAATGAAA
1 AAAATAGAGAAATGGGTAA-TA-TTTAGAAATGATAT-TAATTTTCTCCAAAATGAAA
80623212 TGAAAATGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
56 4 0.08
57 28 0.57
58 17 0.35
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.31
Consensus pattern (58 bp):
AAAATAGAGAAATGGGTAATATTTAGAAATGATATTAATTTTCTCCAAAATGAAAAAC
Found at i:80623220 original size:6 final size:6
Alignment explanation
Indices: 80623203--80623231 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
80623193 AGTTTTCTCC
80623203 AAAATG -AAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
80623232 GAGAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:80629296 original size:23 final size:23
Alignment explanation
Indices: 80629270--80629315 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80629260 TTGTTATGGC
80629270 AAGTTATCATTTTGCCTATAACA
1 AAGTTATCATTTTGCCTATAACA
80629293 AAGTTATCATTTTGCCTATAACA
1 AAGTTATCATTTTGCCTATAACA
80629316 CCCGCCTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (23 bp):
AAGTTATCATTTTGCCTATAACA
Found at i:80631156 original size:13 final size:14
Alignment explanation
Indices: 80631140--80631168 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80631130 TTTCCATCTA
80631140 TCTTCTTTATT-TT
1 TCTTCTTTATTGTT
80631153 TCTTCTTTATTGTT
1 TCTTCTTTATTGTT
80631167 TC
1 TC
80631169 AATATTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.72
Consensus pattern (14 bp):
TCTTCTTTATTGTT
Found at i:80631401 original size:94 final size:94
Alignment explanation
Indices: 80631234--80631537 Score: 324
Period size: 94 Copynumber: 3.2 Consensus size: 94
80631224 TATTTGACTC
** * ** * *
80631234 GACTATAACAATATAGAGTGTTTGTCGAGGCATTAAACACGTGGTAGTCTGCTAAAACATTAAAC
1 GACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATTAAAC
* *
80631299 ATGGGGTTACCTGTGTAAGACCATAGCTCA
66 ATGAGGTTACATGTGTAAGACCATAGCT-A
*
80631329 G-TTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATTAAAC
1 GACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATTAAAC
* * * * *
80631393 ATGTGGTTACAAGTGTAATACCATAACTT
66 ATGAGGTTACATGTGTAAGACCATAGCTA
* * ** * * * *
80631422 GACTATGATAGCATAGAAAGTCTGTCGGGATATTAAACATGGGGTAGT-TCACTAGGACATTAAA
1 GACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCT-GCTAGAACATTAAA
* *
80631486 CATCAGGTTACATGTGTAAGACCATAGCTT
65 CATGAGGTTACATGTGTAAGACCATAGCTA
* * *
80631516 GACTATGACAACATAGAGAGTC
1 GACTATAACAATATAGAAAGTC
80631538 CGCTGGGATG
Statistics
Matches: 176, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
93 2 0.01
94 173 0.98
95 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (94 bp):
GACTATAACAATATAGAAAGTCTGTCGAGATATTAAACACGGGGTAGTCTGCTAGAACATTAAAC
ATGAGGTTACATGTGTAAGACCATAGCTA
Found at i:80631546 original size:94 final size:94
Alignment explanation
Indices: 80631265--80631537 Score: 325
Period size: 94 Copynumber: 2.9 Consensus size: 94
80631255 TTGTCGAGGC
* * * * * *
80631265 ATTAAACACGTGGTAGTCTGCTAAAACATTAAACATGGGGTTACCTGTGTAAGACCATAGC-TCA
1 ATTAAACACGGGGTAGTCTACTAGAACATTAAACATGAGGTTACATGTGTAAGACCATAGCTTGA
* * * *
80631329 GTTATAACAATATAGAAAGTCTGTCGAGAT
66 -CTATGACAACATAGAAAGTCTGTCGGGAT
* * * * *
80631359 ATTAAACACGGGGTAGTCTGCTAGAACATTAAACATGTGGTTACAAGTGTAATACCATAACTTGA
1 ATTAAACACGGGGTAGTCTACTAGAACATTAAACATGAGGTTACATGTGTAAGACCATAGCTTGA
* *
80631424 CTATGATAGCATAGAAAGTCTGTCGGGAT
66 CTATGACAACATAGAAAGTCTGTCGGGAT
* * *
80631453 ATTAAACATGGGGTAGT-TCACTAGGACATTAAACATCAGGTTACATGTGTAAGACCATAGCTTG
1 ATTAAACACGGGGTAGTCT-ACTAGAACATTAAACATGAGGTTACATGTGTAAGACCATAGCTTG
*
80631517 ACTATGACAACATAGAGAGTC
65 ACTATGACAACATAGAAAGTC
80631538 CGCTGGGATG
Statistics
Matches: 152, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 149 0.98
95 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (94 bp):
ATTAAACACGGGGTAGTCTACTAGAACATTAAACATGAGGTTACATGTGTAAGACCATAGCTTGA
CTATGACAACATAGAAAGTCTGTCGGGAT
Found at i:80637215 original size:55 final size:55
Alignment explanation
Indices: 80637143--80637285 Score: 144
Period size: 55 Copynumber: 2.6 Consensus size: 55
80637133 TGCAAGCCCC
** * * **
80637143 ACGCCCGTGTTAATTTAACAGGTTCGACCACGGGTGTTCCACCCGGGTGTGTCGA
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGGGTCTTCCACACGGGCATGTCGA
* ** * *
80637198 ATGCCCGTGTTGTTTTAACAGGTT-TTCCTACGGTTCTTCCACACGGGCATGTCGT
1 ACGCCCGTGTTGTTTTAACAGGTTCGACC-ACGGGTCTTCCACACGGGCATGTCGA
** *
80637253 ACGCCCGTGTTGTTTTGGCAGGCTCGACCACGG
1 ACGCCCGTGTTGTTTTAACAGGTTCGACCACGG
80637286 TCATATCACA
Statistics
Matches: 69, Mismatches: 17, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
54 2 0.03
55 65 0.94
56 2 0.03
ACGTcount: A:0.15, C:0.27, G:0.28, T:0.29
Consensus pattern (55 bp):
ACGCCCGTGTTGTTTTAACAGGTTCGACCACGGGTCTTCCACACGGGCATGTCGA
Found at i:80641266 original size:35 final size:35
Alignment explanation
Indices: 80641220--80641290 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
80641210 CCAGTTGCTG
80641220 AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
1 AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
*
80641255 AGATGGGTCAATCGGCTTCCTTGGAGTAATTCCTT
1 AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
80641290 A
1 A
80641291 CTCCCCCTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (35 bp):
AGATGGGTCAATCGGCTTCCTTAGAGTAATTCCTT
Found at i:80645969 original size:27 final size:27
Alignment explanation
Indices: 80645939--80645991 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
80645929 TATCCTGGGA
80645939 GTAAGATTTCTTACTTCTTTGAATGGT
1 GTAAGATTTCTTACTTCTTTGAATGGT
80645966 GTAAGATTTCTTACTTCTTTGAATGG
1 GTAAGATTTCTTACTTCTTTGAATGG
80645992 CCTCATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (27 bp):
GTAAGATTTCTTACTTCTTTGAATGGT
Found at i:80649827 original size:73 final size:74
Alignment explanation
Indices: 80649646--80650088 Score: 665
Period size: 74 Copynumber: 6.0 Consensus size: 74
80649636 AACAAAGGCA
* * * *
80649646 ACAATCCACGTGTTAGAATACATCAACTGCTTTACATGCTAACAATATTAACTCGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
80649711 ACACAACAT
66 ACACAACAT
* * * * * *
80649720 ACTATCCACATGTTAGAAATCATCAACTGCTTTACATGCTAACAACCTTAACGCACTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
80649785 -CACAACAT
66 ACACAACAT
*
80649793 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTAGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
80649858 -CACAACAT
66 ACACAACAT
* * *
80649866 ACAATCCACGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTTGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
80649931 ACACAACAT
66 ACACAACAT
* * * *
80649940 GCAATCCACATGCTAGAATTCATCAACTTCTTTACATGCTAACAACCTTAACGCGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
*
80650005 ACAAAACAT
66 ACACAACAT
* * *
80650014 AAAATCCACGTGCTAGAATCCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
1 ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
*
80650079 ACATAACAT
66 ACACAACAT
80650088 A
1 A
80650089 TAATAGAGTA
Statistics
Matches: 334, Mismatches: 34, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
73 136 0.41
74 198 0.59
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (74 bp):
ACAATCCACATGCTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
ACACAACAT
Found at i:80657013 original size:25 final size:25
Alignment explanation
Indices: 80656979--80657031 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
80656969 AAAACAACAA
80656979 TGAGCGACATTTATGGGCCAAAGAG
1 TGAGCGACATTTATGGGCCAAAGAG
80657004 TGAGCGACATTTATGGGCCAAAGAG
1 TGAGCGACATTTATGGGCCAAAGAG
80657029 TGA
1 TGA
80657032 ACTGTAGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (25 bp):
TGAGCGACATTTATGGGCCAAAGAG
Found at i:80658369 original size:43 final size:43
Alignment explanation
Indices: 80658305--80658386 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
80658295 TTGTATGTTG
*
80658305 TAATGATTGATTTTGGATGTAGTTATAAGAATGTGTTATATCT
1 TAATGATTAATTTTGGATGTAGTTATAAGAATGTGTTATATCT
*
80658348 TAATGATTAATTTTGGCTGTAGTTATAAGAATGTGTTAT
1 TAATGATTAATTTTGGATGTAGTTATAAGAATGTGTTAT
80658387 GCCTTGTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.46
Consensus pattern (43 bp):
TAATGATTAATTTTGGATGTAGTTATAAGAATGTGTTATATCT
Found at i:80659347 original size:18 final size:19
Alignment explanation
Indices: 80659324--80659361 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
80659314 TCGAAACCGG
80659324 TCAGTTAACC-AAAAAAAT
1 TCAGTTAACCGAAAAAAAT
80659342 TCAGTTAACCGAAAAAAAT
1 TCAGTTAACCGAAAAAAAT
80659361 T
1 T
80659362 AATAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.24
Consensus pattern (19 bp):
TCAGTTAACCGAAAAAAAT
Found at i:80659522 original size:6 final size:6
Alignment explanation
Indices: 80659511--80659556 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
80659501 ATAATTTAAC
80659511 AAATAA AAAT-A AAATAA AAATCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
80659557 ACATATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.14
6 26 0.70
8 6 0.16
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:80659538 original size:19 final size:20
Alignment explanation
Indices: 80659514--80659551 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
80659504 ATTTAACAAA
80659514 TAAAAAT-AAAATAAAAATC
1 TAAAAATAAAAATAAAAATC
80659533 TAAAAATAAAAATAAAAAT
1 TAAAAATAAAAATAAAAAT
80659552 AAAAAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAATC
Found at i:80659557 original size:20 final size:19
Alignment explanation
Indices: 80659515--80659557 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
80659505 TTTAACAAAT
**
80659515 AAAAATAAAATAAAAATCT
1 AAAAATAAAATAAAAATAA
80659534 AAAAATAAAAATAAAAATAA
1 AAAAAT-AAAATAAAAATAA
80659554 AAAA
1 AAAA
80659558 CATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAAATAAAATAAAAATAA
Found at i:80659590 original size:9 final size:9
Alignment explanation
Indices: 80659576--80659661 Score: 136
Period size: 9 Copynumber: 9.6 Consensus size: 9
80659566 TTTATACAAA
80659576 TAATTCGGT
1 TAATTCGGT
80659585 TAATTCGGT
1 TAATTCGGT
80659594 TAATTCGGT
1 TAATTCGGT
* *
80659603 TAATTTGGG
1 TAATTCGGT
*
80659612 TAATTCGGG
1 TAATTCGGT
80659621 TAATTCGGT
1 TAATTCGGT
*
80659630 TAATTCGAT
1 TAATTCGGT
80659639 TAATTCGGT
1 TAATTCGGT
80659648 TAATTCGGT
1 TAATTCGGT
80659657 TAATT
1 TAATT
80659662 TTATACTTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 71 1.00
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:80663411 original size:30 final size:30
Alignment explanation
Indices: 80663377--80663437 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80663367 TCCTTAACTC
80663377 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80663407 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80663437 A
1 A
80663438 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80664337 original size:43 final size:43
Alignment explanation
Indices: 80664257--80664426 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
80664247 TACACGTACA
* * * *
80664257 ATGCCAACGTCCTAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATTG
* **
80664300 ATGTCTTTGTCCCAGACAGGGTCTTACACGAAATCAAATA-TG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
* * * *
80664342 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATC-AAATATTG
* *
80664386 ATGCCAATGTTCCAGAC-GTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATAT
80664427 CGGAATCCTA
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 29 0.28
43 44 0.43
44 30 0.29
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
Found at i:80664401 original size:44 final size:44
Alignment explanation
Indices: 80664307--80664420 Score: 153
Period size: 44 Copynumber: 2.6 Consensus size: 44
80664297 TTGATGTCTT
* * *
80664307 TGTCCCAGACAGGGTCTTACACGAAA--TCAAATATGATGCCGA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
80664349 TGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCTCAAATACGATGCCAA
* *
80664393 TGTTCCAGACGTGGTCTTACACGAAATC
1 TGTCCCAGACATGGTCTTACACGAAATC
80664421 ACATATCGGA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
42 22 0.34
43 8 0.12
44 28 0.44
45 6 0.09
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
Found at i:80668668 original size:30 final size:30
Alignment explanation
Indices: 80668617--80668673 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80668607 ACGGCCATGA
*
80668617 CACACGGGCGTGTGTCCTGCCCGTGTGTCC
1 CACACGGGCGTATGTCCTGCCCGTGTGTCC
*
80668647 CACACGGGCGTATAGT-TTGCCCGTGTG
1 CACACGGGCGTAT-GTCCTGCCCGTGTG
80668674 AAAGTGCCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.11, C:0.32, G:0.33, T:0.25
Consensus pattern (30 bp):
CACACGGGCGTATGTCCTGCCCGTGTGTCC
Found at i:80672167 original size:19 final size:21
Alignment explanation
Indices: 80672143--80672184 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
80672133 AATCATAATA
80672143 AATAACA-AAT-ATAATGAAG
1 AATAACAGAATAATAATGAAG
80672162 AATAACAGTAATAATAATGAAG
1 AATAACAG-AATAATAATGAAG
80672184 A
1 A
80672185 CTAATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
AATAACAGAATAATAATGAAG
Found at i:80682803 original size:48 final size:48
Alignment explanation
Indices: 80682724--80683003 Score: 234
Period size: 48 Copynumber: 5.9 Consensus size: 48
80682714 CACATAGTAG
* * * * * *
80682724 GATGCTAATGCCATATCCTAAATATGGTCTTACATGGGATCAAATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* * *
80682772 AATGCCAATGCTATGTCCCAGACATGGTCTTACATGAGAT--CATG-C
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* * * * * *
80682817 -ATACCGAA-GCCGATAG-CCCAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCC-AATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATGTC
* *
80682865 GATGCCAATGCCATGTCCCAGACACGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* *
80682913 GATACCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
* * * ** *
80682961 GATGCCAATACAATGACCTGGACATGATCTTACATGGGATCAC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
80683004 TCATATCCCT
Statistics
Matches: 188, Mismatches: 31, Indels: 26
0.77 0.13 0.11
Matches are distributed among these distances:
44 7 0.04
45 23 0.12
46 5 0.03
47 5 0.03
48 140 0.74
49 8 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATGTC
Found at i:80686764 original size:33 final size:34
Alignment explanation
Indices: 80686700--80686790 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 34
80686690 ACGTTCAAGG
* * * *
80686700 TGCCATAACCCAGTTACGGTCTTTTCATTAAA-A-
1 TGCCATAGCCCAGCTATGGTC-TTCCATTAAACAC
80686733 TGCCATAGCCCAGCTATGGTCTTCCATTTAAACAC
1 TGCCATAGCCCAGCTATGGTCTTCCA-TTAAACAC
* * *
80686768 TGCCATAGTCCAACCATGGTCTT
1 TGCCATAGCCCAGCTATGGTCTT
80686791 ATCTGTCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
32 4 0.08
33 23 0.48
34 1 0.02
35 20 0.42
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (34 bp):
TGCCATAGCCCAGCTATGGTCTTCCATTAAACAC
Found at i:80689507 original size:48 final size:48
Alignment explanation
Indices: 80689448--80689563 Score: 137
Period size: 47 Copynumber: 2.4 Consensus size: 48
80689438 TATGTGTGCT
* * *
80689448 AGTGTAAGACCATGTTTGGGACATGACATTGGCCACGAT-ATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGACATTGG-CAAGATAATAAAAGCC
* * * *
80689496 AGTGTAAGACCATG-TTGGAACATGGCATTGGCAATATAATAAAAGCT
1 AGTGTAAGACCATGTTTGGGACATGACATTGGCAAGATAATAAAAGCC
*
80689543 AGTGTGAGACCATGTTTGGGA
1 AGTGTAAGACCATGTTTGGGA
80689564 TATGGCATCG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 4 0.07
47 34 0.60
48 19 0.33
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGACATTGGCAAGATAATAAAAGCC
Found at i:80689748 original size:144 final size:143
Alignment explanation
Indices: 80689486--80689749 Score: 320
Period size: 144 Copynumber: 1.8 Consensus size: 143
80689476 TTGGCCACGA
* * * *
80689486 TATGAGAGCCAGTGTAAGACCATGTTGGAACATGGCATTGGCAATATAATAAAAGCTAGTGTGAG
1 TATGAGAGCCAGTGTAAGACCATGTTGGAACATAGCATCGACAATATAATAAAAGCTAGTGTAAG
* * * * * * *
80689551 ACCATGTTTGGGATATGGCATCGGTATTGATATGTGCGCTAGTGTAAGACCATGTCTGACACACA
66 ACCATGTCTGGGATATGGCATCGGTATCGACATGTGAGCCAATATAAGACCATGTCTGACACACA
80689616 GCACCAGCTACAT
131 GCACCAGCTACAT
* * *
80689629 TATGAGAGCCAGTGTAAGACCATGTCT-GAGACATAGCATCGACATTGA-AACT-AGAGTTAGTG
1 TATGAGAGCCAGTGTAAGACCATGT-TGGA-ACATAGCATCGACAAT-ATAA-TAAAAGCTAGTG
*
80689691 TAAGACCATGTCTGGGATATGGCATCGG-ACTCGACGTGTGAGCCAATATAAGACCATGT
62 TAAGACCATGTCTGGGATATGGCATCGGTA-TCGACATGTGAGCCAATATAAGACCATGT
80689750 TTAGAATATG
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
143 28 0.28
144 71 0.70
145 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (143 bp):
TATGAGAGCCAGTGTAAGACCATGTTGGAACATAGCATCGACAATATAATAAAAGCTAGTGTAAG
ACCATGTCTGGGATATGGCATCGGTATCGACATGTGAGCCAATATAAGACCATGTCTGACACACA
GCACCAGCTACAT
Found at i:80697252 original size:48 final size:48
Alignment explanation
Indices: 80697192--80697512 Score: 285
Period size: 48 Copynumber: 6.7 Consensus size: 48
80697182 TATGTGTGCT
*
80697192 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCC
* * * * * *
80697240 AGTGTAAGACCATGTTTGGAACATGGTATCAGCAATG-TAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAT-ATGAGAGCC
* * * * *
80697288 AGTGTAAGACCATGTCTGGGACATGGTAT-AGACATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATATGAG-AGCC
* * *
80697336 AGTGTAAGACCATGTCTGGGACATAGCATTAACCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGA-TATGAGAGCC
* * * ** **
80697384 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGAGACAAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATATGAGAGCC
* * * *
80697432 AGTGTAAGACCATGTCTAGGACATGGCATC-GACCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CCACGATATGAGAGCC
* * *
80697480 AGTATAAGACCATGTTTGGAACATGGCATCAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
80697513 AATTCACCCT
Statistics
Matches: 219, Mismatches: 43, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
47 8 0.04
48 203 0.93
49 8 0.04
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCC
Found at i:80697356 original size:144 final size:143
Alignment explanation
Indices: 80697186--80697510 Score: 395
Period size: 144 Copynumber: 2.3 Consensus size: 143
80697176 GGGTCATATG
**
80697186 TGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGTGTAAGA
1 TGTGACTAGTGTAAGACCATGTCTGGGACATGGCATCAACCAC-ATTATGAGAGCCAGTGTAAGA
* * ** *
80697249 CCATGTTTGGAACATGGTATCAGCAATGTA-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATG
65 CCATGTCTGGAACATGGCATCAGCAATG-AGACAAGAGCTAGTGTAAGACCATGTCTAGGACATG
* *
80697313 GTATAGACATTGATA
129 GCATAGACATCGATA
* *
80697328 TGTGCACTAGTGTAAGACCATGTCTGGGACATAGCATTAACCACATTATGAGAGCCAGTGTAAGA
1 TGTG-ACTAGTGTAAGACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCCAGTGTAAGA
* * * *
80697393 CCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGTTAGTGTAAGACCATGTCTAGGACATGG
65 CCATGTCTGGAACATGGCATCAGCAATGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGG
* * *
80697458 CATCGACCTCGACA
130 CATAGACATCGATA
* * * *
80697472 TGTGAGCCAGTATAAGACCATGTTTGGAACATGGCATCA
1 TGTGA-CTAGTGTAAGACCATGTCTGGGACATGGCATCA
80697511 GCAATTCACC
Statistics
Matches: 154, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
142 4 0.03
143 3 0.02
144 147 0.95
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (143 bp):
TGTGACTAGTGTAAGACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCCAGTGTAAGAC
CATGTCTGGAACATGGCATCAGCAATGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
ATAGACATCGATA
Found at i:80697420 original size:96 final size:96
Alignment explanation
Indices: 80697192--80697509 Score: 322
Period size: 96 Copynumber: 3.3 Consensus size: 96
80697182 TATGTGTGCT
* * *
80697192 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCTAGTGTAAGACCATGTC
* * * * *
80697256 TGGAACATGGTA-TCAGCA-ATGTAATGAGAGCT
65 TGGGACATGGCATTAACCACAT-T-ATGAGAGCC
* * * *
80697288 AGTGTAAGACCATGTCTGGGACATGGTATAGACATTGATATGTGCA-CTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAG-AGCTAGTGTAAGACCATGTC
*
80697352 TGGGACATAGCATTAACCACATTATGAGAGCC
65 TGGGACATGGCATTAACCACATTATGAGAGCC
* ** *
80697384 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGTTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
* ** * * *
80697449 AGGACATGGCATCGACCTCGA-CATGTGAGCC
66 GGGACATGGCATTAACCAC-ATTATGAGAGCC
* * *
80697480 AGTATAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
80697510 AGCAATTCAC
Statistics
Matches: 185, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
95 3 0.02
96 173 0.94
97 7 0.04
98 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATTAACCACATTATGAGAGCC
Found at i:80703982 original size:11 final size:11
Alignment explanation
Indices: 80703966--80704006 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
80703956 TTGATTAATT
80703966 TTAAAAAATAA
1 TTAAAAAATAA
80703977 TTAAAAAATAA
1 TTAAAAAATAA
*
80703988 --AATAAAATAT
1 TTAA-AAAATAA
80703998 TTAAAAAAT
1 TTAAAAAAT
80704007 GAAAAAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
9 2 0.08
10 6 0.23
11 16 0.62
12 2 0.08
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TTAAAAAATAA
Found at i:80703995 original size:21 final size:21
Alignment explanation
Indices: 80703968--80704015 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
80703958 GATTAATTTT
80703968 AAAAAATAATTAAAAAAT-AA
1 AAAAAATAATTAAAAAATGAA
*
80703988 AATAAAATATTTAAAAAATGAA
1 AA-AAAATAATTAAAAAATGAA
80704010 AAAAAA
1 AAAAAA
80704016 GCAACCAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 19 0.76
22 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAAAATAATTAAAAAATGAA
Found at i:80706664 original size:57 final size:57
Alignment explanation
Indices: 80706576--80706691 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
80706566 TCGATTTATC
80706576 ATAATTAACACATTGGCTTGAACAAATCTCATATTCTTTCAAAATCTATTTTAATGA
1 ATAATTAACACATTGGCTTGAACAAATCTCATATTCTTTCAAAATCTATTTTAATGA
80706633 ATAATTAACACATTGGCTTGAACAAATCTCATATTCTTTCAAAATCTATTTTAATGA
1 ATAATTAACACATTGGCTTGAACAAATCTCATATTCTTTCAAAATCTATTTTAATGA
80706690 AT
1 AT
80706692 GTGTTCTCCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (57 bp):
ATAATTAACACATTGGCTTGAACAAATCTCATATTCTTTCAAAATCTATTTTAATGA
Found at i:80709400 original size:48 final size:48
Alignment explanation
Indices: 80709333--80709710 Score: 434
Period size: 48 Copynumber: 7.9 Consensus size: 48
80709323 ATACTAGGGT
* * *
80709333 TATGTGAGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * * * *
80709381 TATGAGAGCTAATGTAAGACTATGTATGGGACATGGTATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * *
80709429 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGTCATCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * **
80709477 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * *
80709525 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * * *
80709573 TATGAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATTGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* *
80709621 CATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-GGCATTGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--A
* * *
80709670 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG
80709711 ACATCTTACC
Statistics
Matches: 268, Mismatches: 59, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
47 5 0.02
48 227 0.85
49 35 0.13
50 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
Found at i:80709507 original size:96 final size:96
Alignment explanation
Indices: 80709333--80709710 Score: 605
Period size: 96 Copynumber: 3.9 Consensus size: 96
80709323 ATACTAGGGT
* * *
80709333 TATGTGAGCCAGTGTAAGACCATGTTTGGAATATGGCATCGGCATTGATATGAGAGCTAATGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
* * *
80709398 GACTATGTATGGGACATGGTATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
*
80709429 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGTCATCGACATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
*
80709494 GACCATGTCTGGGACATGGCATCGGCCTCAA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
80709525 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
* *
80709590 GACAATGTCTGGGACATGGCATTGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * *
80709621 CATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-GGCATTGATATATGAGAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTG--ATATGAGAGCTAGTGT
80709685 AAGACCATGTCTGGGACATGGCATCG
64 AAGACCATGTCTGGGACATGGCATCG
80709711 ACATCTTACC
Statistics
Matches: 262, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
95 6 0.02
96 217 0.83
97 39 0.15
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:80715257 original size:26 final size:25
Alignment explanation
Indices: 80715218--80715291 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
80715208 CTAACCTATT
*
80715218 AATTAAACTTTAATTATCTTATCTA
1 AATTAAACTCTAATTATCTTATCTA
* *
80715243 AATTAAAACTCTAATTATCCTAATTTA
1 AATT-AAACTCTAATTAT-CTTATCTA
*
80715270 AATTTAACTCCTAATTATCTTA
1 AATTAAACT-CTAATTATCTTA
80715292 ATTAAAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 4 0.10
26 19 0.46
27 18 0.44
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.45
Consensus pattern (25 bp):
AATTAAACTCTAATTATCTTATCTA
Found at i:80715260 original size:21 final size:21
Alignment explanation
Indices: 80715236--80715303 Score: 57
Period size: 26 Copynumber: 3.0 Consensus size: 21
80715226 TTTAATTATC
80715236 TTATCTAAATTAAAACTCTAA
1 TTATCTAAATTAAAACTCTAA
*
80715257 TTATCCTAATTTAAATTTAACTCCTAA
1 TTAT-CTAAATT-AA---AACT-CTAA
*
80715284 TTATCTTAATTAAAA-TCTAA
1 TTATCTAAATTAAAACTCTAA
80715304 AATTATTATC
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
20 4 0.11
21 5 0.13
22 8 0.21
23 2 0.05
25 2 0.05
26 9 0.24
27 8 0.21
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.43
Consensus pattern (21 bp):
TTATCTAAATTAAAACTCTAA
Found at i:80715288 original size:53 final size:52
Alignment explanation
Indices: 80715154--80715404 Score: 171
Period size: 53 Copynumber: 4.8 Consensus size: 52
80715144 TCACTCTAAC
* * * * *
80715154 TATCCTAATATAATTTAAAATTCTAATTATTTTAATTAAAATCT-AAA-TT-AT
1 TATCCTAATTTAATTTAAACTACTAATTATCTTAACT-AAAT-TAAAACTTAAT
* *
80715205 TAT-CTAACCTATTAA-TTAAACT-TTAATTATCTTATCTAAATTAAAACTCTAAT
1 TATCCTAA--T-TTAATTTAAACTACTAATTATCTTAACTAAATTAAAACT-TAAT
* *
80715258 TATCCTAATTTAAATTT-AACTCCTAATTATCTTAATTAAAATCTAAAA-TT-AT
1 TATCCTAATTT-AATTTAAACTACTAATTATCTTAACT-AAAT-TAAAACTTAAT
* * * * * *
80715310 TAT-CTAACCTATTAATTTAAATTATTAATGATCTTAAATAGATTAGAACTTTAAT
1 TATCCTAA--T-TTAATTTAAACTACTAATTATCTTAACTAAATTAAAAC-TTAAT
*
80715365 TATCCTAATTTAATTTAAACTTCTAATTATCTTAACTAAA
1 TATCCTAATTTAATTTAAACTACTAATTATCTTAACTAAA
80715405 ATCTAAATTA
Statistics
Matches: 157, Mismatches: 22, Indels: 40
0.72 0.10 0.18
Matches are distributed among these distances:
49 1 0.01
50 11 0.07
51 21 0.13
52 24 0.15
53 57 0.36
54 29 0.18
55 10 0.06
56 4 0.03
ACGTcount: A:0.42, C:0.12, G:0.01, T:0.45
Consensus pattern (52 bp):
TATCCTAATTTAATTTAAACTACTAATTATCTTAACTAAATTAAAACTTAAT
Found at i:80715296 original size:26 final size:26
Alignment explanation
Indices: 80715146--80715404 Score: 94
Period size: 27 Copynumber: 9.8 Consensus size: 26
80715136 CGACCGCATC
* * *
80715146 ACTCTAACTATCCTAATATAATTTAAA
1 ACTCTAATTATCTTAAT-TAAATTAAA
* *
80715173 ATTCTAATTATTTTAATTAAAATCT-AA
1 ACTCTAATTATCTTAATT-AAAT-TAAA
*
80715200 A-T-T-ATTATC-TAACCTATTAATT-AA
1 ACTCTAATTATCTTAA--T-TAAATTAAA
*
80715224 ACTTTAATTATCTT-ATCTAAATTAAA
1 ACTCTAATTATCTTAAT-TAAATTAAA
* *
80715250 ACTCTAATTATCCTAATTTAAATT-TA
1 ACTCTAATTATCTTAA-TTAAATTAAA
80715276 ACTCCTAATTATCTTAATTAAAATCTAAA
1 ACT-CTAATTATCTTAATT-AAAT-TAAA
* *
80715305 A-T-T-ATTATCTAACCTATTAATTTAAA
1 ACTCTAATTATCTTA---ATTAAATTAAA
* * * *
80715331 TTA-T-TAATGATCTTAAATAGATTAGA
1 --ACTCTAATTATCTTAATTAAATTAAA
* * * *
80715357 ACTTTAATTATCCTAATTTAATTTAA
1 ACTCTAATTATCTTAATTAAATTAAA
*
80715383 ACTTCTAATTATCTTAACTAAA
1 AC-TCTAATTATCTTAATTAAA
80715405 ATCTAAATTA
Statistics
Matches: 174, Mismatches: 33, Indels: 50
0.68 0.13 0.19
Matches are distributed among these distances:
23 3 0.02
24 10 0.06
25 21 0.12
26 53 0.30
27 67 0.39
28 11 0.06
29 9 0.05
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.44
Consensus pattern (26 bp):
ACTCTAATTATCTTAATTAAATTAAA
Found at i:80715391 original size:107 final size:104
Alignment explanation
Indices: 80715146--80715419 Score: 388
Period size: 107 Copynumber: 2.6 Consensus size: 104
80715136 CGACCGCATC
* * * *
80715146 ACTCTAACTATCCTAATATAATTTAAAATTCTAATTATTTTAATTAAAATCTAAATTATTATCTA
1 ACTCTAATTATCCTAATTTAATTTAAACTTCTAATTATCTTAATTAAAATCTAAATTATTATCTA
* **
80715211 ACCTATTAATTAAACTTTAATTATCTTATCTAAATTAAA
66 ACCTATTAATTAAACTTTAATGATCTTAAATAAATTAAA
*
80715250 ACTCTAATTATCCTAATTTAAATTT-AACTCCTAATTATCTTAATTAAAATCTAAAATTATTATC
1 ACTCTAATTATCCTAATTT-AATTTAAACTTCTAATTATCTTAATTAAAATCT-AAATTATTATC
* * *
80715314 TAACCTATTAATTTAAATTATTAATGATCTTAAATAGATTAGA
64 TAACCTATTAA-TTAAACT-TTAATGATCTTAAATAAATTAAA
* *
80715357 ACTTTAATTATCCTAATTTAATTTAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATC
1 ACTCTAATTATCCTAATTTAATTTAAACTTCTAATTATCTTAATTAAAATCTAAATTATTATC
80715420 GGGAAGAAAT
Statistics
Matches: 151, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
104 41 0.27
105 27 0.18
106 22 0.15
107 61 0.40
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.44
Consensus pattern (104 bp):
ACTCTAATTATCCTAATTTAATTTAAACTTCTAATTATCTTAATTAAAATCTAAATTATTATCTA
ACCTATTAATTAAACTTTAATGATCTTAAATAAATTAAA
Found at i:80718017 original size:31 final size:31
Alignment explanation
Indices: 80717979--80718042 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
80717969 TTGACTCATG
80717979 TAATTTGCAGGATCTTGGATTTATAGGTCCA
1 TAATTTGCAGGATCTTGGATTTATAGGTCCA
80718010 TAATTTGCAGGATCTTGGATTTATAGGTCCA
1 TAATTTGCAGGATCTTGGATTTATAGGTCCA
80718041 TA
1 TA
80718043 CTTTACCTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (31 bp):
TAATTTGCAGGATCTTGGATTTATAGGTCCA
Found at i:80719434 original size:118 final size:118
Alignment explanation
Indices: 80719226--80719462 Score: 456
Period size: 118 Copynumber: 2.0 Consensus size: 118
80719216 ATGATAAGAT
*
80719226 TAATTGAGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCTAAAGTTACTCAGGAAAGTAA
1 TAATTGAGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAA
80719291 TTATGGATGCTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCG
66 TTATGGATGCTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCG
*
80719344 TAATTGGGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAA
1 TAATTGAGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAA
80719409 TTATGGATGCTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCG
66 TTATGGATGCTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCG
80719462 T
1 T
80719463 CTAAGTCTTT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (118 bp):
TAATTGAGAGTTCATCGATGCTTCCCTTGTTGCTGTTGGGATCCCAAAGTTACTCAGGAAAGTAA
TTATGGATGCTATTTCTTCCTCTACTATATAGATCCTTTGGAATGGAATTCCG
Found at i:80722063 original size:19 final size:20
Alignment explanation
Indices: 80722035--80722073 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80722025 TCCCATTATT
80722035 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
80722054 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
80722074 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:80722091 original size:25 final size:23
Alignment explanation
Indices: 80722054--80722099 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
80722044 TTTGTTTTAA
*
80722054 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
80722077 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
80722100 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:80722465 original size:21 final size:20
Alignment explanation
Indices: 80722441--80722512 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 20
80722431 CCTAATTATC
80722441 TTATCTAAATTAAAAATCTAA
1 TTATCTAAATT-AAAATCTAA
*
80722462 TTATCCTAATTTATTTAAACTCCTAA
1 TTAT-CTAA---A-TTAAAAT-CTAA
*
80722488 TTATCTTAATTAAAATCTAAA
1 TTATCTAAATTAAAATCT-AA
80722509 TTAT
1 TTAT
80722513 TATCTAACCT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
20 2 0.05
21 16 0.39
22 5 0.12
25 8 0.20
26 10 0.24
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATCTAAATTAAAATCTAA
Found at i:80727101 original size:41 final size:42
Alignment explanation
Indices: 80727039--80727120 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 42
80727029 GAATCGGTGC
* * *
80727039 CGATACCATGTCCCGGACATGGT-TTATACGGGACCTCATAT
1 CGATACCATGTCCCAGACATGGTCTTACACGAGACCTCATAT
* *
80727080 CGATGCCATGTCCCAGACATGGTCTTACACGAGAGCTCATA
1 CGATACCATGTCCCAGACATGGTCTTACACGAGACCTCATA
80727121 AATCATGGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 21 0.60
42 14 0.40
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
CGATACCATGTCCCAGACATGGTCTTACACGAGACCTCATAT
Found at i:80729396 original size:26 final size:26
Alignment explanation
Indices: 80729363--80729427 Score: 98
Period size: 24 Copynumber: 2.5 Consensus size: 26
80729353 AAACTCTTCT
80729363 AAAAGAAAACTCAAGAGAAATTCTTG
1 AAAAGAAAACTCAAGAGAAATTCTTG
*
80729389 AAAAGAAAACTC--GAGAGATTCTTG
1 AAAAGAAAACTCAAGAGAAATTCTTG
80729413 AAAAGAAAACCTCAA
1 AAAAGAAAA-CTCAA
80729428 AAAGACTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
24 20 0.57
25 3 0.09
26 12 0.34
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.17
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAATTCTTG
Found at i:80731849 original size:40 final size:40
Alignment explanation
Indices: 80731790--80731977 Score: 295
Period size: 40 Copynumber: 4.7 Consensus size: 40
80731780 GAGCATTGGA
*
80731790 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCAAGTTG
* *
80731830 ATATATCCGGGCTATGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCAAGTTG
* * *
80731870 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCAAGTTG
*
80731910 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCAAGTTG
* *
80731950 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
80731978 ATGTGTTTGC
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTACGCAAGTTG
Found at i:80733790 original size:135 final size:138
Alignment explanation
Indices: 80733520--80733797 Score: 375
Period size: 135 Copynumber: 2.0 Consensus size: 138
80733510 AATAATAAGA
*
80733520 TCTAATAAATAAAATATTGGGCTCATATATAATAATAATTAAGCCTAAAAATTGAACCCAATATG
1 TCTAATAAATAAAATATTGGGCTC--A-ATAATAATAATTAAGCCTAAAAATCGAACCCAATATG
* * * *
80733585 ATTTAAACTTGAATTAAAAGCCTGAAACTCGTAATTTTCGTAATAATCTCATCCAAAAAGTTTGC
63 ATTTAAACTTGAATTAAAAGCCCGAAACTCGTAATTTCCGTAATAATCCCATCCAAAAAGTTTAC
*
80733650 CCACACAGTCT
128 CCACACAATCT
* *
80733661 TCTAATAAATAAAATATTGGGCTC-AT-AT-ATAATTAAGCCTAAAAATCGATCCTAATATGATT
1 TCTAATAAATAAAATATTGGGCTCAATAATAATAATTAAGCCTAAAAATCGAACCCAATATGATT
* * * **
80733723 TAAACTTGAATTAAAAGCCCGAAACTTGTAATTTCCGTAATAATCCCGTCCAGAAA-TTCTATTC
66 TAAACTTGAATTAAAAGCCCGAAACTCGTAATTTCCGTAATAATCCCATCCAAAAAGTT-TACCC
80733787 ACACAATCT
130 ACACAATCT
80733796 TC
1 TC
80733798 ACTAAAATGA
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
134 2 0.02
135 93 0.76
136 2 0.02
137 2 0.02
141 24 0.20
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (138 bp):
TCTAATAAATAAAATATTGGGCTCAATAATAATAATTAAGCCTAAAAATCGAACCCAATATGATT
TAAACTTGAATTAAAAGCCCGAAACTCGTAATTTCCGTAATAATCCCATCCAAAAAGTTTACCCA
CACAATCT
Found at i:80740547 original size:5 final size:5
Alignment explanation
Indices: 80740516--80740569 Score: 72
Period size: 5 Copynumber: 10.2 Consensus size: 5
80740506 GAGATTATGA
*
80740516 AATTG AATGTG AAATTG CATATG AATTG AATTG AATTG AATTG AATTG
1 AATTG AAT-TG -AATTG AAT-TG AATTG AATTG AATTG AATTG AATTG
80740564 AATTG A
1 AATTG A
80740570 GATTTATGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
5 33 0.75
6 8 0.18
7 3 0.07
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (5 bp):
AATTG
Found at i:80740634 original size:31 final size:31
Alignment explanation
Indices: 80740599--80740745 Score: 163
Period size: 31 Copynumber: 4.7 Consensus size: 31
80740589 ATAAAATAGA
*
80740599 GTATGAATATGAAAATATGAATGATTACAGG
1 GTATGAATATGAAAATATGAATGATTACAAG
*
80740630 GTATGGATAT-AAAAGTATGAATGATTACAAG
1 GTATGAATATGAAAA-TATGAATGATTACAAG
* * * *
80740661 ATATGAATATGACAGTATGAATGATTACAGG
1 GTATGAATATGAAAATATGAATGATTACAAG
* * *
80740692 GCATGACTAT-AAAGGTATGAATGATTACAAG
1 GTATGAATATGAAA-ATATGAATGATTACAAG
* *
80740723 GTATGAACATGTAAATATGAATG
1 GTATGAATATGAAAATATGAATG
80740746 GTTGATGCCC
Statistics
Matches: 95, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
30 6 0.06
31 85 0.89
32 4 0.04
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (31 bp):
GTATGAATATGAAAATATGAATGATTACAAG
Found at i:80740667 original size:17 final size:17
Alignment explanation
Indices: 80740614--80740729 Score: 97
Period size: 17 Copynumber: 7.4 Consensus size: 17
80740604 AATATGAAAA
*
80740614 TATGAATGATTACAGGG
1 TATGAATGATTACAAGG
* *
80740631 TATGGAT-A-TA-AAAG
1 TATGAATGATTACAAGG
*
80740645 TATGAATGATTACAAGA
1 TATGAATGATTACAAGG
*
80740662 TATGAAT-ATGAC-A-G
1 TATGAATGATTACAAGG
*
80740676 TATGAATGATTACAGGG
1 TATGAATGATTACAAGG
* *
80740693 CATGACT-A-TA-AAGG
1 TATGAATGATTACAAGG
80740707 TATGAATGATTACAAGG
1 TATGAATGATTACAAGG
80740724 TATGAA
1 TATGAA
80740730 CATGTAAATA
Statistics
Matches: 75, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
14 23 0.31
15 11 0.15
16 10 0.13
17 31 0.41
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.28
Consensus pattern (17 bp):
TATGAATGATTACAAGG
Found at i:80740669 original size:62 final size:62
Alignment explanation
Indices: 80740600--80740745 Score: 213
Period size: 62 Copynumber: 2.4 Consensus size: 62
80740590 TAAAATAGAG
*
80740600 TATGAATATGAAAATATGAATGATTACAGGGTATGGA-TATAAAAGTATGAATGATTACAAGA
1 TATGAATATGAAAATATGAATGATTACAGGGCAT-GACTATAAAAGTATGAATGATTACAAGA
* * * *
80740662 TATGAATATGACAGTATGAATGATTACAGGGCATGACTATAAAGGTATGAATGATTACAAGG
1 TATGAATATGAAAATATGAATGATTACAGGGCATGACTATAAAAGTATGAATGATTACAAGA
* *
80740724 TATGAACATGTAAATATGAATG
1 TATGAATATGAAAATATGAATG
80740746 GTTGATGCCC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 2 0.03
62 72 0.97
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (62 bp):
TATGAATATGAAAATATGAATGATTACAGGGCATGACTATAAAAGTATGAATGATTACAAGA
Found at i:80740681 original size:14 final size:14
Alignment explanation
Indices: 80740598--80740682 Score: 53
Period size: 14 Copynumber: 5.6 Consensus size: 14
80740588 GATAAAATAG
*
80740598 AGTATGAATATGAA
1 AGTATGAATATGAC
* *
80740612 AATATGAATGATTAC
1 AGTATGAAT-ATGAC
* * *
80740627 AGGGTATGGATATAAA
1 A--GTATGAATATGAC
*
80740643 AGTATGAATGATTAC
1 AGTATGAAT-ATGAC
80740658 AAGATATGAATATGAC
1 -AG-TATGAATATGAC
80740674 AGTATGAAT
1 AGTATGAAT
80740683 GATTACAGGG
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
14 22 0.41
15 9 0.17
16 10 0.19
17 13 0.24
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (14 bp):
AGTATGAATATGAC
Found at i:80744090 original size:19 final size:20
Alignment explanation
Indices: 80744049--80744091 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
80744039 TTTTGTAAAG
* *
80744049 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
80744069 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
80744088 TTTG
1 TTTG
80744092 GGTTGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:80745276 original size:12 final size:12
Alignment explanation
Indices: 80745261--80745290 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80745251 ACAATAATAC
80745261 TATATATAAATG
1 TATATATAAATG
*
80745273 TATATATATATG
1 TATATATAAATG
80745285 TATATA
1 TATATA
80745291 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:80745394 original size:17 final size:18
Alignment explanation
Indices: 80745372--80745426 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 18
80745362 AAAGTAATAA
80745372 AAAATA-ATACTATATAT
1 AAAATATATACTATATAT
*
80745389 AAAATATATA-TATACAT
1 AAAATATATACTATATAT
*
80745406 AAAATATACACTAATATAT
1 AAAATATATACT-ATATAT
80745425 AA
1 AA
80745427 TAGTAATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 21 0.66
18 4 0.12
19 7 0.22
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATATATACTATATAT
Found at i:80756461 original size:16 final size:16
Alignment explanation
Indices: 80756440--80756483 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
80756430 AATTAAAGTA
*
80756440 ATAAAAATA-ATACTAT
1 ATAAAAATATATA-TAC
80756456 ATAAAATATATATATAC
1 ATAAAA-ATATATATAC
80756473 ATAAAAATATA
1 ATAAAAATATA
80756484 CACTAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 11 0.44
17 11 0.44
18 3 0.12
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAAATATATATAC
Found at i:80756709 original size:3 final size:3
Alignment explanation
Indices: 80756696--80756779 Score: 54
Period size: 3 Copynumber: 28.3 Consensus size: 3
80756686 GAGGGCATAT
*
80756696 ATA AT- ATA ATA ATA AT- ATA A-A AAA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
80756741 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80756780 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
2 11 0.17
3 45 0.69
4 7 0.11
5 2 0.03
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:80756754 original size:18 final size:18
Alignment explanation
Indices: 80756692--80756779 Score: 74
Period size: 18 Copynumber: 4.7 Consensus size: 18
80756682 TGGAGAGGGC
80756692 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
80756710 ATATAAA-AA-AATATATA
1 ATATAAATAATAATA-ATA
*
80756727 CATGAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
* *
80756747 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
80756765 ATAATAAAATAATAA
1 AT-AT-AAATAATAA
80756780 AACAAAGCTC
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
16 4 0.07
17 6 0.11
18 22 0.39
19 8 0.14
20 13 0.23
21 4 0.07
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:80757139 original size:22 final size:22
Alignment explanation
Indices: 80757105--80757168 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 22
80757095 CCTTTTTTAC
*
80757105 AAAAAAA-CACCTCCAAAAACA
1 AAAAAAACCTCCTCCAAAAACA
80757126 AAAAAAACCTCCTCC-AAAACA
1 AAAAAAACCTCCTCCAAAAACA
* *
80757147 AAGAACAATCCTTCTCCAAAAA
1 AA-AA-AAACCTCCTCCAAAAA
80757169 ACCAAAACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 15 0.42
22 8 0.22
23 9 0.25
24 4 0.11
ACGTcount: A:0.58, C:0.30, G:0.02, T:0.11
Consensus pattern (22 bp):
AAAAAAACCTCCTCCAAAAACA
Found at i:80757697 original size:40 final size:40
Alignment explanation
Indices: 80757653--80757804 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 40
80757643 GTGTTTTTAG
*
80757653 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * * ***
80757693 TCTGCTTCACTATTGCTTAGGGAAATAAGATCTGTGGTTTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGCGA
*
80757735 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
*
80757775 TCTACTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
80757805 TTGTAATCTT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
40 58 0.62
41 4 0.04
42 31 0.33
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:80757744 original size:82 final size:83
Alignment explanation
Indices: 80757637--80757805 Score: 259
Period size: 82 Copynumber: 2.0 Consensus size: 83
80757627 CATGGGGATG
* * * * *
80757637 AGATTTGTGTTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGCGATCTGCTTCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
80757702 CTATTGCTTAGGGAAATA
66 CTACTGCTTAGGGAAATA
*
80757720 AGATCTGTGGTTTTA-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTAATGCGATCTACTCCA
1 AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
*
80757784 CTACTGCTTAGGGAGATA
66 CTACTGCTTAGGGAAATA
80757802 AGAT
1 AGAT
80757806 TGTAATCTTC
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 65 0.83
83 13 0.17
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (83 bp):
AGATCTGTGGTTTTAGTCTGCTCCACTACTACTTAGGGAGATAAGACTTAATGCGATCTACTCCA
CTACTGCTTAGGGAAATA
Found at i:80758275 original size:268 final size:257
Alignment explanation
Indices: 80757967--80758524 Score: 917
Period size: 268 Copynumber: 2.1 Consensus size: 257
80757957 ACTTCCTACC
* *
80757967 AATATAGGAAGGCAGGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
80758032 ATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGT-GT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
80758097 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGTGAGAT
128 CTGCC-AATA-AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA-ATACAG-GAGAT
80758162 AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGC
189 AGA-TTATCGGC-TC-ATGTACTCCACTGTAGTCA-GGAGGTAAAATCTGCCAT-TTCGAT-TGC
*
80758227 TTCGCT-CCG
248 TTCGCTGCCA
80758236 AATACAGGAAGGCAAGATCTGCAAT-TTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
*
80758300 ATCGGCTTCAATGTACTCCACTGTGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTG
66 ATCGGCTTCAATGTACTCCACTGTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTG
80758365 CCAATAAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACAGGAGATAGATTAT
131 CCAATAAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACAGGAGATAGATTAT
* *
80758430 CGGCTCATGTACTCCACTGTGGTCAGGAGGTAAAATCTGCCATTTTGATTGCTTCGCTGCCA
196 CGGCTCATGTACTCCACTGTAGTCAGGAGGTAAAATCTGCCATTTCGATTGCTTCGCTGCCA
80758492 AATACAGGAA-GCAAGATCTGCAATCTT-AATCTA
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA
80758525 CTTCACACCA
Statistics
Matches: 281, Mismatches: 6, Indels: 18
0.92 0.02 0.06
Matches are distributed among these distances:
255 29 0.10
256 19 0.07
257 18 0.06
258 18 0.06
259 2 0.01
260 8 0.03
261 8 0.03
262 6 0.02
263 41 0.15
264 4 0.01
265 40 0.14
267 2 0.01
268 63 0.22
269 23 0.08
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (257 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTG
CCAATAAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACAGGAGATAGATTAT
CGGCTCATGTACTCCACTGTAGTCAGGAGGTAAAATCTGCCATTTCGATTGCTTCGCTGCCA
Found at i:80758287 original size:45 final size:46
Alignment explanation
Indices: 80757972--80758419 Score: 174
Period size: 45 Copynumber: 10.1 Consensus size: 46
80757962 CTACCAATAT
* *
80757972 AGGAAGGCAGGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
1 AGGAAGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
* * * * ** * * *
80758018 AGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG-TAG-TCAC
1 AGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAGAT-AC
* * * * * *
80758062 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CGCTGCCTA-ATAC
1 AGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCC-AGATAC
*
80758108 AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
1 AGGAAGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
* * * ** * * *
80758154 AGTG-AGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG-TAG-T-C
1 AG-GAAGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
* * * * * *
80758196 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CGCT-CC-GAATAC
1 AGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAG-ATAC
*
80758241 AGGAAGGCAAGATCTGCAAT-TTCAATCTATTCCACTGCCAGATAC
1 AGGAAGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
* * * * ** * * *
80758286 AGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCACTG--TG-T-C
1 AGGAAGGTA-AGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
* * * ** * *
80758327 AGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CGCTGCCA-ATA-
1 AGGAAGGTAAGATCTGCAATCTTCAATCT-ATTCCACTGCCAGATAC
*
80758371 AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA-ATAC
1 AGGAAGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
80758416 AGGA
1 AGGA
80758420 GATAGATTAT
Statistics
Matches: 279, Mismatches: 89, Indels: 69
0.64 0.20 0.16
Matches are distributed among these distances:
40 3 0.01
41 14 0.05
42 20 0.07
43 21 0.08
44 61 0.22
45 95 0.34
46 55 0.20
47 10 0.04
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (46 bp):
AGGAAGGTAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATAC
Found at i:80758301 original size:132 final size:133
Alignment explanation
Indices: 80757965--80758524 Score: 923
Period size: 136 Copynumber: 4.3 Consensus size: 133
80757955 CCACTTCCTA
* *
80757965 CCAATATAGGAAGGCAGGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAG
1 CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAG
80758030 TTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
66 TTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
80758095 CGCTG
129 CGCTG
*
80758100 CCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGTGAGATAGA
1 CC-AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGA
80758165 GTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTC
65 GTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTC
80758230 GCT-
130 GCTG
80758233 CCGAATACAGGAAGGCAAGATCTGCAAT-TTCAATCTATTCCACTGCCAGATACAGGGAGATAGA
1 CC-AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGA
*
80758297 GTTATCGGCTTCAATGTACTCCACTGT-GTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTC
65 GTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTC
80758361 GCTG
130 GCTG
80758365 CCAATA-AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA-ATACA-GGAGATAGA-
1 CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAG
* *
80758426 TTATCGGC-TC-ATGTACTCCACTGTGGTCA-GGAGGTAAAATCTGCCAT-TTTGAT-TGCTTCG
66 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
80758486 CTG
131 CTG
80758489 CCAAATACAGGAA-GCAAGATCTGCAATCTT-AATCTA
1 CC-AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA
80758525 CTTCACACCA
Statistics
Matches: 413, Mismatches: 6, Indels: 23
0.93 0.01 0.05
Matches are distributed among these distances:
124 18 0.04
125 27 0.07
126 37 0.09
127 6 0.01
128 8 0.02
129 9 0.02
130 25 0.06
131 63 0.15
132 64 0.15
133 27 0.07
134 38 0.09
135 2 0.00
136 89 0.22
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (133 bp):
CCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAG
TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
CTG
Found at i:80758623 original size:44 final size:44
Alignment explanation
Indices: 80758492--80759035 Score: 462
Period size: 44 Copynumber: 12.5 Consensus size: 44
80758482 TTCGCTGCCA
* * *
80758492 AATACAGGAAG-CAAGATCTGCAATCTT-AATCTACTTCACACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * *
80758534 AGTATGGGAAGACAAGATCTGC-ATCTTGGATC-ACTTC-CTATC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
80758576 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * *
80758620 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * * * *
80758665 AATATGGGAAGACAAGATCTGC-ATATTGGATCCACTTC-CTATC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
80758708 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * *
80758752 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* *
80758797 AATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * * *
80758840 AATATAGAAAGATAGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * *
80758884 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * * * *
80758929 AATATGGGAAGACAAGATCTGC-ATCCTGGATCCACTTC-CTATC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * * *
80758972 AATATAGGAAGATAGGACCTGCTATCTTCGATCTGCTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* *
80759016 AATACATGAAGACAAGATCT
1 AATATAGGAAGACAAGATCT
80759036 ACTTTAATGA
Statistics
Matches: 388, Mismatches: 96, Indels: 34
0.75 0.19 0.07
Matches are distributed among these distances:
41 1 0.00
42 40 0.10
43 83 0.21
44 194 0.50
45 70 0.18
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (44 bp):
AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
Found at i:80758730 original size:132 final size:132
Alignment explanation
Indices: 80758520--80759040 Score: 929
Period size: 132 Copynumber: 4.0 Consensus size: 132
80758510 TGCAATCTTA
* *
80758520 ATCTACTTC-ACACCAGTATGGGAAGACAAGATCTGCATCTTGGAT-CACTTCCTATCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
80758583 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
80758648 CG
131 CG
*
80758650 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATATTGGATCCACTTCCTATCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
80758715 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
80758780 CG
131 CG
* *
80758782 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
* * *
80758847 AAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
80758912 CG
131 CG
*
80758914 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCCTGGATCCACTTCCTATCAATATAG
1 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
* *
80758979 GAAGATAGGACCTGCTATCTTCGATCTGCTTCACGCCAATACATGAAGACAAGATCTACTTT
66 GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
80759041 AATGACTTCA
Statistics
Matches: 372, Mismatches: 17, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
130 9 0.02
131 33 0.09
132 330 0.89
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (132 bp):
ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAG
GAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTG
CG
Found at i:80771191 original size:12 final size:12
Alignment explanation
Indices: 80771176--80771205 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80771166 ACAATAATAC
80771176 TATATATAAATG
1 TATATATAAATG
*
80771188 TATATATATATG
1 TATATATAAATG
80771200 TATATA
1 TATATA
80771206 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:80771311 original size:19 final size:17
Alignment explanation
Indices: 80771287--80771333 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
80771277 AATTAAAGTA
*
80771287 ATAAAAAATAATACTATAT
1 ATAAAAAAT-ATA-TATAC
*
80771306 ATAAAATATATATATAC
1 ATAAAAAATATATATAC
80771323 AT-AAAAATATA
1 ATAAAAAATATA
80771334 CACTAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 8 0.32
17 6 0.24
18 3 0.12
19 8 0.32
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAAATATATATAC
Found at i:80771329 original size:18 final size:19
Alignment explanation
Indices: 80771290--80771338 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
80771280 TAAAGTAATA
*
80771290 AAAAATA-ATACTATATAT
1 AAAAATATATACTATACAT
80771308 -AAAATATATA-TATACAT
1 AAAAATATATACTATACAT
*
80771325 AAAAATATACACTA
1 AAAAATATATACTA
80771339 ATATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 12 0.46
18 12 0.46
19 2 0.08
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATATATACTATACAT
Found at i:80771565 original size:3 final size:3
Alignment explanation
Indices: 80771552--80771637 Score: 60
Period size: 3 Copynumber: 29.3 Consensus size: 3
80771542 GAGGGCATAT
80771552 ATA AT- ATA ATA ATA AT- ATA A-A A-A ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA
* *
80771596 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80771638 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 13 0.19
3 46 0.68
4 7 0.10
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:80771578 original size:18 final size:18
Alignment explanation
Indices: 80771557--80771637 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
80771547 CATATATAAT
80771557 ATAATAATAATATAAAAA
1 ATAATAATAATATAAAAA
* *
80771575 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-ATAAAAA
*
80771596 ATAATAATAATATAAATA
1 ATAATAATAATATAAAAA
*
80771614 ATAGTAA-AA-ATAATAAA
1 ATAATAATAATATAA-AAA
80771631 ATAATAA
1 ATAATAA
80771638 AACAAAGCTC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
16 4 0.08
17 10 0.19
18 18 0.34
19 5 0.09
20 5 0.09
21 11 0.21
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (18 bp):
ATAATAATAATATAAAAA
Found at i:80772003 original size:23 final size:23
Alignment explanation
Indices: 80771968--80772040 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
80771958 CCTTTTTTAC
*
80771968 AAAAAAA-CACCTCCAAAAAACA
1 AAAAAAACCTCCTCCAAAAAACA
80771990 AAAAAAACCTCCTCC--AAAACA
1 AAAAAAACCTCCTCCAAAAAACA
* * *
80772011 AAGAACAATCCTTCTCCAAAAAACC
1 AA-AA-AAACCTCCTCCAAAAAACA
80772036 AAAAA
1 AAAAA
80772041 CCCACCCTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
21 8 0.19
22 9 0.21
23 16 0.38
24 2 0.05
25 7 0.17
ACGTcount: A:0.60, C:0.29, G:0.01, T:0.10
Consensus pattern (23 bp):
AAAAAAACCTCCTCCAAAAAACA
Found at i:80772008 original size:21 final size:21
Alignment explanation
Indices: 80771966--80772031 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
80771956 AACCTTTTTT
**
80771966 ACAAAAAAACACCTCC-AAAAA
1 ACAAAAAAA-ACCTCCTCCAAA
80771987 ACAAAAAAAACCTCCTCCAAA
1 ACAAAAAAAACCTCCTCCAAA
* *
80772008 ACAAAGAACAATCCTTCTCCAAA
1 ACAAA-AA-AAACCTCCTCCAAA
80772031 A
1 A
80772032 AACCAAAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.16
21 17 0.45
22 2 0.05
23 13 0.34
ACGTcount: A:0.58, C:0.30, G:0.02, T:0.11
Consensus pattern (21 bp):
ACAAAAAAAACCTCCTCCAAA
Found at i:80772470 original size:48 final size:48
Alignment explanation
Indices: 80772408--80772576 Score: 198
Period size: 48 Copynumber: 3.6 Consensus size: 48
80772398 TGATATGTGT
*
80772408 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * ** ** *
80772456 GCCAGTGTAAGACATGTTTGGGACATGCATCAGCATTAAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * *
80772502 GCTAGTGTAAGATATGTCTAGGATATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
*
80772550 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
80772577 GCGTCAACTT
Statistics
Matches: 94, Mismatches: 25, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
46 33 0.35
47 2 0.02
48 59 0.63
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:80772699 original size:49 final size:49
Alignment explanation
Indices: 80772596--80772726 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 49
80772586 TGTTGCGTGT
* *
80772596 TAGTGTAAGACTTGTTTAGGACATGGCATCGACACTGATAGATGAGAGC
1 TAGTGTAAGACTTGTTTGGGACATGGCATCGACACTGATAGATGAAAGC
* * * * *
80772645 TAGTGTAAGACTTATTTGGGACACGGCATCGGC-CTCTATATATGAAAG-
1 TAGTGTAAGACTTGTTTGGGACATGGCATCGACACT-GATAGATGAAAGC
* * *
80772693 TCAGTGTAAAACCTGTCTGGGACATGGCATCGAC
1 T-AGTGTAAGACTTGTTTGGGACATGGCATCGAC
80772727 TTTGATGTGC
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 3 0.04
49 64 0.96
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (49 bp):
TAGTGTAAGACTTGTTTGGGACATGGCATCGACACTGATAGATGAAAGC
Found at i:80773595 original size:330 final size:330
Alignment explanation
Indices: 80772987--80773650 Score: 1265
Period size: 330 Copynumber: 2.0 Consensus size: 330
80772977 TATCTATGTA
*
80772987 TTTTACGTGAAGTATGAAATGTGAATTCAATCAACATTGTATGCTTGGTGAGAGATGATTATGAA
1 TTTTACATGAAGTATGAAATGTGAATTCAATCAACATTGTATGCTTGGTGAGAGATGATTATGAA
80773052 CAATTAATATTTATGAATCCTCACTTTCGTGCGCAAATTGAGTTATGTTAGGAGTATGATCCTTT
66 CAATTAATATTTATGAATCCTCACTTTCGTGCGCAAATTGAGTTATGTTAGGAGTATGATCCTTT
80773117 ATGGTAACTTATAGCTATTTCATTATTTACATGCTACTTACTAAGCTTTATGCTTACCCATTTTA
131 ATGGTAACTTATAGCTATTTCATTATTTACATGCTACTTACTAAGCTTTATGCTTACCCATTTTA
* *
80773182 CTTTCCATTTCCTTGTAGTGCCGCCAAATTAGCCTGTGGATCAGATACCATTAGAGGCCTCGTTC
196 CTTTCCATTTCCTTGTAGTGCCGCCAAATTAGCCCGTGGATCAGATACCATCAGAGGCCTCGTTC
80773247 ACACTATCATTTGAAGCACTTGGTATAGTTAGTTCTTTTATTTTGATTATGGCATGTATAGGACT
261 ACACTATCATTTGAAGCACTTGGTATAGTTAGTTCTTTTATTTTGATTATGGCATGTATAGGACT
80773312 TTGTC
326 TTGTC
*
80773317 TTTTACATGAAGTATGAAATGTGGATTCAATCAACATTGTATGCTTGGTGAGAGATGATTATGAA
1 TTTTACATGAAGTATGAAATGTGAATTCAATCAACATTGTATGCTTGGTGAGAGATGATTATGAA
*
80773382 CAATTAATATTTATGAATCCTCACTTTCGTGCGTAAATTGAGTTATGTTAGGAGTATGATCCTTT
66 CAATTAATATTTATGAATCCTCACTTTCGTGCGCAAATTGAGTTATGTTAGGAGTATGATCCTTT
*
80773447 ATGGTAACTTGTAGCTATTTCATTATTTACATGCTACTTACTAAGCTTTATGCTTACCCATTTTA
131 ATGGTAACTTATAGCTATTTCATTATTTACATGCTACTTACTAAGCTTTATGCTTACCCATTTTA
80773512 CTTTCCATTTCCTTGTAGTGCCGCCAAATTAGCCCGTGGATCAGATACCATCAGAGGCCTCGTTC
196 CTTTCCATTTCCTTGTAGTGCCGCCAAATTAGCCCGTGGATCAGATACCATCAGAGGCCTCGTTC
*
80773577 ACACTATCATTTGAAGCACTTGGTATAGTTAGTTCTTTTATTTTTATTATGGCATGTATAGGACT
261 ACACTATCATTTGAAGCACTTGGTATAGTTAGTTCTTTTATTTTGATTATGGCATGTATAGGACT
80773642 TTGTC
326 TTGTC
80773647 TTTT
1 TTTT
80773651 GAGTTTTCTA
Statistics
Matches: 327, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
330 327 1.00
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (330 bp):
TTTTACATGAAGTATGAAATGTGAATTCAATCAACATTGTATGCTTGGTGAGAGATGATTATGAA
CAATTAATATTTATGAATCCTCACTTTCGTGCGCAAATTGAGTTATGTTAGGAGTATGATCCTTT
ATGGTAACTTATAGCTATTTCATTATTTACATGCTACTTACTAAGCTTTATGCTTACCCATTTTA
CTTTCCATTTCCTTGTAGTGCCGCCAAATTAGCCCGTGGATCAGATACCATCAGAGGCCTCGTTC
ACACTATCATTTGAAGCACTTGGTATAGTTAGTTCTTTTATTTTGATTATGGCATGTATAGGACT
TTGTC
Found at i:80793200 original size:21 final size:21
Alignment explanation
Indices: 80793159--80793200 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
80793149 GTTGAGAAAA
* *
80793159 TTATTTAATTTAAAATTTAAT
1 TTATTTAAATTAAAATATAAT
80793180 TTATTTAAATTAATAA-ATAAT
1 TTATTTAAATTAA-AATATAAT
80793201 ATTTATATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATTTAAATTAAAATATAAT
Found at i:80794111 original size:15 final size:18
Alignment explanation
Indices: 80794091--80794126 Score: 51
Period size: 15 Copynumber: 2.2 Consensus size: 18
80794081 TTATTATTTT
80794091 ATTTTTT-T-ATT-TTAA
1 ATTTTTTATAATTATTAA
80794106 ATTTTTTATAATTATTAA
1 ATTTTTTATAATTATTAA
80794124 ATT
1 ATT
80794127 CTAAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.39
16 1 0.06
17 3 0.17
18 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTTATAATTATTAA
Found at i:80794342 original size:19 final size:19
Alignment explanation
Indices: 80794295--80794334 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80794285 ATTATTTAAC
80794295 TTATCTTTGAATTAATAAA
1 TTATCTTTGAATTAATAAA
80794314 TTATCTTTGAATTAATAAA
1 TTATCTTTGAATTAATAAA
80794333 TT
1 TT
80794335 CTTTTTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
TTATCTTTGAATTAATAAA
Found at i:80794836 original size:19 final size:19
Alignment explanation
Indices: 80794812--80794850 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
80794802 ATACTAAAAG
80794812 TAAGAAAATTAGTTTTGAT
1 TAAGAAAATTAGTTTTGAT
80794831 TAAGAAAATTAGTTTTGAT
1 TAAGAAAATTAGTTTTGAT
80794850 T
1 T
80794851 CTATGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (19 bp):
TAAGAAAATTAGTTTTGAT
Found at i:80796985 original size:46 final size:47
Alignment explanation
Indices: 80796832--80797056 Score: 151
Period size: 46 Copynumber: 4.8 Consensus size: 47
80796822 GGGTTATTGT
* * * * *
80796832 GAGCTAGTGTAAGACATGTCTGGGACAT-GCACCAGCCA-C-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATC-GGCATCGA-GACGA
*
80796878 GAGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGACGA
* * * *
80796926 GTGCTAGTATAAGACATGT-TCGGGACAT-GCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCT-GGGACATGGCATCGGCATCGAGACG-A
** * * *
80796973 -AGCCAGTGTAAGACATGGATAGGACAT-GCATTGGC-TACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-CGAGACGA
* ** * *
80797018 TAGTTAGTGTAAGACCATGTCTGGGATATGACATCGGCA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
80797057 CCCTACCCCA
Statistics
Matches: 141, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 73 0.52
47 41 0.29
48 24 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACGA
Found at i:80798698 original size:32 final size:32
Alignment explanation
Indices: 80798662--80798725 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
80798652 TACTAAGTGG
*
80798662 TATTACATGGTCAAATTGTAATATGGAAATAT
1 TATTAAATGGTCAAATTGTAATATGGAAATAT
*
80798694 TATTAAATGGTCGAATTGTAATATGGAAATAT
1 TATTAAATGGTCAAATTGTAATATGGAAATAT
80798726 AACTTGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.38
Consensus pattern (32 bp):
TATTAAATGGTCAAATTGTAATATGGAAATAT
Found at i:80807692 original size:21 final size:22
Alignment explanation
Indices: 80807662--80807704 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
80807652 CATGATTTTG
80807662 TTTTATTTCTTTTCTTTTTGAA
1 TTTTATTTCTTTTCTTTTTGAA
80807684 TTTT-TTTCTTTTCTTTTTGAA
1 TTTTATTTCTTTTCTTTTTGAA
80807705 AATTTCCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (22 bp):
TTTTATTTCTTTTCTTTTTGAA
Found at i:80811029 original size:21 final size:22
Alignment explanation
Indices: 80810983--80811029 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
80810973 TGCAAGGCTC
**
80810983 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAAGGG
*
80811005 ACACGCCCGTGTGACCCTA-GG
1 ACACGCCCGTGTGACCCAAGGG
80811026 ACAC
1 ACAC
80811030 ACCTGTGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGG
Found at i:80812322 original size:56 final size:58
Alignment explanation
Indices: 80812231--80812380 Score: 166
Period size: 56 Copynumber: 2.6 Consensus size: 58
80812221 TAGTGTATAA
* * *
80812231 CAGGATTACCAGTCCAGGCTAAATCCTTTCTATAACGTATGCTCAA-AGAGT-TCA-AT
1 CAGGATTACCAGTCCAGGCTAAACCCTATCTATAACGTATACTCAAGAG-GTATCATAT
* * *
80812287 TAGGATTACCAGTCCAGGCTAAACCCTAATC-ATAACGTATACTCGAGAGGTATTATAT
1 CAGGATTACCAGTCCAGGCTAAACCCT-ATCTATAACGTATACTCAAGAGGTATCATAT
* *
80812345 CAGGATTACCCGTCCAGGCTAAATCCT-TCCTATAAC
1 CAGGATTACCAGTCCAGGCTAAACCCTAT-CTATAAC
80812381 AAGGTCAATA
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
56 41 0.52
57 7 0.09
58 31 0.39
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (58 bp):
CAGGATTACCAGTCCAGGCTAAACCCTATCTATAACGTATACTCAAGAGGTATCATAT
Found at i:80823619 original size:13 final size:13
Alignment explanation
Indices: 80823601--80823628 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80823591 GAAGCACGAC
80823601 TCACACGGGCGTG
1 TCACACGGGCGTG
80823614 TCACACGGGCGTG
1 TCACACGGGCGTG
80823627 TC
1 TC
80823629 CCTGTCGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:80826653 original size:55 final size:55
Alignment explanation
Indices: 80826583--80826702 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
80826573 GCTAACCTGC
* *
80826583 CAAAATAACACGGGCGTGCGACACACCCGTGCCTTGAAACCGTGGCCGAACCCGT
1 CAAATTAACACGGGCGTGCGACACACCCGTGCCTAGAAACCGTGGCCGAACCCGT
* * * * * * * *
80826638 CAAATTAACACGGGCGTTCGACACGCCCTTGTCTAGCACCCGTGGTCGAACCTGT
1 CAAATTAACACGGGCGTGCGACACACCCGTGCCTAGAAACCGTGGCCGAACCCGT
*
80826693 TAAATTAACA
1 CAAATTAACA
80826703 AGTGCATGGG
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.28, C:0.32, G:0.23, T:0.18
Consensus pattern (55 bp):
CAAATTAACACGGGCGTGCGACACACCCGTGCCTAGAAACCGTGGCCGAACCCGT
Found at i:80827264 original size:16 final size:16
Alignment explanation
Indices: 80827243--80827274 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
80827233 TGGTTAGGAT
80827243 AGTTGAAATAATCATG
1 AGTTGAAATAATCATG
80827259 AGTTGAAATAATCATG
1 AGTTGAAATAATCATG
80827275 CCTTTTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (16 bp):
AGTTGAAATAATCATG
Done.