Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 254 of 318
Found at i:80837521 original size:18 final size:18
Alignment explanation
Indices: 80837500--80837543 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
80837490 ATAATCAGTA
80837500 ATTCAGTAACAGTCAAAT
1 ATTCAGTAACAGTCAAAT
* *
80837518 ATTCAGTAGCAGTCAATT
1 ATTCAGTAACAGTCAAAT
80837536 ATTCAGTA
1 ATTCAGTA
80837544 TCTTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (18 bp):
ATTCAGTAACAGTCAAAT
Found at i:80837771 original size:51 final size:53
Alignment explanation
Indices: 80837659--80837777 Score: 134
Period size: 51 Copynumber: 2.3 Consensus size: 53
80837649 CTGTAACGGT
* * ***
80837659 AACAGTAATAGTAACAGTAGCGGTACATAGAGTACCTCATCGGAACAAATTTGG
1 AACAGTAACAGTAACAGTAGAGGTA-ATAGAGTACCTCATCGGAACAAATCCAG
* **
80837713 AACAGTAACAGTAACAGTA-AGGT-ATAGAGTACCTCTTCGGAATGAATCCAG
1 AACAGTAACAGTAACAGTAGAGGTAATAGAGTACCTCATCGGAACAAATCCAG
*
80837764 AATAGTAACAGTAA
1 AACAGTAACAGTAA
80837778 AGCGACAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
51 35 0.62
53 3 0.05
54 18 0.32
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTAGAGGTAATAGAGTACCTCATCGGAACAAATCCAG
Found at i:80839045 original size:16 final size:16
Alignment explanation
Indices: 80839021--80839064 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
80839011 TTTAATTTGT
*
80839021 TTAATAATATAATATAA
1 TTAATAATATAAT-CAA
80839038 TT-ATAATATAATCAA
1 TTAATAATATAATCAA
80839053 TTAATAATATAA
1 TTAATAATATAA
80839065 AATATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.16
16 19 0.76
17 2 0.08
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAATAATATAATCAA
Found at i:80851034 original size:14 final size:16
Alignment explanation
Indices: 80851010--80851041 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80851000 TTAAAAGAAC
80851010 ATTTCTTAAAA-CCAA
1 ATTTCTTAAAACCCAA
80851025 ATTT-TTAAAACCCAA
1 ATTTCTTAAAACCCAA
80851040 AT
1 AT
80851042 CCATAGCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (16 bp):
ATTTCTTAAAACCCAA
Found at i:80860158 original size:31 final size:29
Alignment explanation
Indices: 80860089--80860158 Score: 68
Period size: 31 Copynumber: 2.3 Consensus size: 29
80860079 GGGTACAAGT
* * *
80860089 TTTTTTTTTATTCTAATTTGATATTTGAG
1 TTTTTTTTAATTCTAATTTAATATTTGAA
* *
80860118 TTTAATTTTAATGTTTAATTTAATATTTGAAA
1 TTT-TTTTTAAT-TCTAATTTAATATTTG-AA
80860150 TTTTTTTTA
1 TTTTTTTTA
80860159 TTAAGTAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
29 3 0.09
30 6 0.19
31 19 0.59
32 4 0.12
ACGTcount: A:0.27, C:0.01, G:0.07, T:0.64
Consensus pattern (29 bp):
TTTTTTTTAATTCTAATTTAATATTTGAA
Found at i:80862449 original size:15 final size:15
Alignment explanation
Indices: 80862431--80862460 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80862421 GTACCATCTA
*
80862431 AATATGTTCTTGAAT
1 AATATGTCCTTGAAT
80862446 AATATGTCCTTGAAT
1 AATATGTCCTTGAAT
80862461 GGGCTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (15 bp):
AATATGTCCTTGAAT
Found at i:80864085 original size:33 final size:33
Alignment explanation
Indices: 80864031--80864122 Score: 121
Period size: 33 Copynumber: 2.7 Consensus size: 33
80864021 GGTTCTGGGC
* *
80864031 TAGGCCGTGTGGGTCATACGGGCAAGGCCAAATA
1 TAGG-CGTGTGGGCCACACGGGCAAGGCCAAATA
*
80864065 TAGGTGTGTGGGCCACACGGGCAAGGCCAAATA
1 TAGGCGTGTGGGCCACACGGGCAAGGCCAAATA
* *
80864098 TGGGCGTGTGGGCCTACATGGGCAA
1 TAGGCGTGTGGGCC-ACACGGGCAA
80864123 ACCACACGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
33 38 0.75
34 13 0.25
ACGTcount: A:0.24, C:0.21, G:0.38, T:0.17
Consensus pattern (33 bp):
TAGGCGTGTGGGCCACACGGGCAAGGCCAAATA
Found at i:80864601 original size:19 final size:19
Alignment explanation
Indices: 80864573--80864616 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
80864563 ATTTTGGCAT
* *
80864573 ATCTGCTATCTGAATCTGA
1 ATCTGATATCTAAATCTGA
80864592 ATCTGATATCTAAATCTGA
1 ATCTGATATCTAAATCTGA
*
80864611 GTCTGA
1 ATCTGA
80864617 AATTAAGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (19 bp):
ATCTGATATCTAAATCTGA
Found at i:80869000 original size:40 final size:40
Alignment explanation
Indices: 80868963--80869148 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
80868953 GCTACTCGTT
* **
80868963 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
80869003 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
80869043 CAAATGCCTTCCGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
80869083 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
80869124 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
80869149 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 113 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:80877770 original size:23 final size:23
Alignment explanation
Indices: 80877744--80877817 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
80877734 TTGAATTGGC
80877744 TTGTAAATGATATGTGTTTGGTT
1 TTGTAAATGATATGTGTTTGGTT
** * *
80877767 TTGTTTATAGCTATGTGAATTGG-T
1 TTGTAAAT-GATATGTG-TTTGGTT
80877791 TTGTAAATGATATGTGTTTGGTT
1 TTGTAAATGATATGTGTTTGGTT
80877814 TTGT
1 TTGT
80877818 TTATAGCTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
22 4 0.10
23 18 0.45
24 14 0.35
25 4 0.10
ACGTcount: A:0.20, C:0.01, G:0.26, T:0.53
Consensus pattern (23 bp):
TTGTAAATGATATGTGTTTGGTT
Found at i:80877781 original size:24 final size:24
Alignment explanation
Indices: 80877754--80877830 Score: 95
Period size: 24 Copynumber: 3.2 Consensus size: 24
80877744 TTGTAAATGA
80877754 TATGTGTTTGGTTTTGTTTATAGC
1 TATGTGTTTGGTTTTGTTTATAGC
* ** *
80877778 TATGTGAATTGG-TTTGTAAAT-GA
1 TATGTG-TTTGGTTTTGTTTATAGC
80877801 TATGTGTTTGGTTTTGTTTATAGC
1 TATGTGTTTGGTTTTGTTTATAGC
80877825 TATGTG
1 TATGTG
80877831 AATTGGCTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 4 0.10
23 14 0.33
24 20 0.48
25 4 0.10
ACGTcount: A:0.18, C:0.03, G:0.26, T:0.53
Consensus pattern (24 bp):
TATGTGTTTGGTTTTGTTTATAGC
Found at i:80877788 original size:47 final size:47
Alignment explanation
Indices: 80877735--80877839 Score: 201
Period size: 47 Copynumber: 2.2 Consensus size: 47
80877725 TTTAGCCATT
80877735 TGAATTGGCTTGTAAATGATATGTGTTTGGTTTTGTTTATAGCTATG
1 TGAATTGGCTTGTAAATGATATGTGTTTGGTTTTGTTTATAGCTATG
*
80877782 TGAATTGGTTTGTAAATGATATGTGTTTGGTTTTGTTTATAGCTATG
1 TGAATTGGCTTGTAAATGATATGTGTTTGGTTTTGTTTATAGCTATG
80877829 TGAATTGGCTT
1 TGAATTGGCTT
80877840 ATTTTTTCAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.21, C:0.04, G:0.26, T:0.50
Consensus pattern (47 bp):
TGAATTGGCTTGTAAATGATATGTGTTTGGTTTTGTTTATAGCTATG
Found at i:80891446 original size:3 final size:3
Alignment explanation
Indices: 80891422--80891468 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
80891412 TATACTAAAG
80891422 AAT AAT ATAT AAT -AT AGA- AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
80891467 AA
1 AA
80891469 AAGGCTAACC
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 3 0.08
3 33 0.82
4 4 0.10
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80895951 original size:694 final size:690
Alignment explanation
Indices: 80894554--80896453 Score: 2131
Period size: 694 Copynumber: 2.7 Consensus size: 690
80894544 GGTGATACAA
* * * * * * *
80894554 GTTAGATTTGCCGTTAGAGTTAGAGAAGATTCATAATGTATTCCACATATCGAT-TCTATGACGG
1 GTTAGCTTTGCCATCAGAGTTAGAAAAGATTCATAATGTATTCAACATACCGATGT-TAAG-CGG
* * * * * *
80894618 TAT-AGATCAGATCTTTCACAGGTAATATCCCCAGTTGATGTTGGAATTCAACCTGATACGACAT
64 TATCA-ATTAGATCCTGCACAGGTAATATCCCCAGTTGATGTTAGAATTCAACCTAATATG--A-
* * * *
80894682 ACAGTGAAGAACAGATCAAAATTATATCTCAGGAAGTTAAATATTTGAGAAATCAAGGTATAGCT
125 ACAGTGAAG-A-TGATCAAAACTATATCTCAGGAAGTTAAAGATTTGAGAAATAAAGGTATAGCT
* ** * * * *
80894747 TTAGTTAAAGGTCTTTGGTAATGACACAGAATCAGAGAGGTTGCCTGGGAACCAGAAGAAGCTAT
188 TTAGTTAAAGTTCTTTGGTAACAACACGGAATAAAAGAGGATGCCTGGGAACCAGAAGAAGCTAT
* * * *
80894812 GAAAGTGCAATACTTAAACTTATTTTTTGGTAAGATACTCAGGGACGAAACTTCCCTTAGGGGGA
253 GAAAGTGCAA-ACTTGAACTTATTTTCTGGTAAGATATTAAGGGACGAAA-TT-CCTTAGGGGGA
** * *
80894877 GTTTTGTAACAGCGCGTTTGTAGTGAAGTTGGAGAAGTGGTTTCGGGACCACAAA-TCTGACGAA
315 GAGTTGTAACAGC-CGTTTATAGTGAA-TTGG-GAAGTGGTTTCGAGACCACAAATTC-GACGAA
* ** ** * *
80894941 GCTTTATAGGGTCAAAAGTGTCGAATTTTGA-TATAATAGAAAGAGCTGAGCGAGAAAAAGTT-T
376 GCTTTGTAGGGTTGAAAGTGTCGAA-TTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTAT
* * * * * *
80895004 TCCTGTGTTGATTTGATTTGAGAAACCGAAGAGAAGTTCAAAGTGATATGTGATAGCTTGAAAGT
440 T--TGTGTTGATTTGATTTGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGATAACTTGAAAGC
* * * * *
80895069 AGCTTTTGATTGACATAAATCTTACACAGATTTGAAAAGAAAAGATATTGAATTTCAAGTGGCGT
503 AGCTTTTGATCGACAAAAATCTTACACAGATCTGAAAAGAAAAGATATTGAATTTCAAGTAGCGA
* *
80895134 CATAGTATTTTTTGAAAGTATTGCCTTGGAAGAAAATTCTTTGATTTGGTCAAATGGAAAGCTTA
568 CACAGTATTTTTTGAAAGTATTGCCTTGGAAGAAAATTCTTTGATTTGGTCAAAAGGAAAGCTTA
** * * **
80895199 GTTTATGGTTTATCTGGCCATTTGAGATCATTGGGAGAACTAGGCTAGTATTTTATTG
633 GTTTATGGTTTATCAAGCCATTTGAGATCATTGAGAGAACTAGGCCAGTAGCTTATTG
* * * * * * *
80895257 GTTATCTTTTCCATTAGAGTTAGAAACGATTCATAATTTATTCAACGTATCGATGTTAAGTCGGT
1 GTTAGCTTTGCCATCAGAGTTAGAAAAGATTCATAATGTATTCAACATACCGATGTTAAG-CGGT
** * * *
80895322 ATCGGTTAGATTCTGCACGGGTAATATCCCCAGTTGATG-TAGACATTCAACCTGATATG-AC-G
65 ATCAATTAGATCCTGCACAGGTAATATCCCCAGTTGATGTTAGA-ATTCAACCTAATATGAACAG
* * * *
80895384 T-ACAG-T-ATCAGAACTATATCTCAAGAAGTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGT
129 TGA-AGATGATCAAAACTATATCTCAGGAAGTTAAAGATTTGAGAAATAAAGGTATAGCTTTAGT
* * * * * * * *
80895446 TAAAGTTCTTTGGCAACAACACGGAATAAAAGAAGATGCATAGGAACCAAAAAAAGATATGAAAT
193 TAAAGTTCTTTGGTAACAACACGGAATAAAAGAGGATGCCTGGGAACCAGAAGAAGCTATGAAAG
* * **
80895511 TGCAACACTTGAGCTTATTTTCTGGTAAGATTTTTGGGGACGAATATTCCTATAGGGGGAGAGTT
258 TGCAA-ACTTGAACTTATTTTCTGGTAAGATATTAAGGGACGAA-ATTCCT-TAGGGGGAGAGTT
* *
80895576 GTAATAGCCATTT-TCAGTGGAATTGGGATAGTGGTTTCGAGACCACAAATTCGACGAAGCTTTG
320 GTAACAGCCGTTTAT-AGT-GAATTGGGA-AGTGGTTTCGAGACCACAAATTCGACGAAGCTTTG
* * * * *
80895640 TATGGTTGAAAGTGTCGAAGTCCATTATACTGGACAGAGTTGAGCAAGAAAAAGTTATTTGGTGT
382 TAGGGTTGAAAGTGTCGAATTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTT-GTGT
* * *
80895705 TGATTTGATTTGAGAAACTGAAGAAAAGGTCAAACTGATACATGATAACTTGACAGCAG-TTTTG
446 TGATTTGATTTGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGATAACTTGAAAGCAGCTTTT-
* *
80895769 GATCGATAAAAATCTTACGCTA-ATCTGAAAAGAAAAGATATTGAATTTCAAGTAAGCGACACAG
510 GATCGACAAAAATCTTACAC-AGATCTGAAAAGAAAAGATATTGAATTTCAAGT-AGCGACACAG
* *
80895833 TA-TTTTTGAAAGTGTTGCCTTGGAAGAAAGTTCTTTGATTTGGTCGAAAAGGAAAGCTTAGTTT
573 TATTTTTTGAAAGTATTGCCTTGGAAGAAAATTCTTTGATTTGGTC-AAAAGGAAAGCTTAGTTT
* * *
80895897 GTGGTTTATCAAGCCATTTGAGATCATTGAGAGAATTGGGCCAGTAGCTTATTG
637 ATGGTTTATCAAGCCATTTGAGATCATTGAGAGAACTAGGCCAGTAGCTTATTG
* *
80895951 GTTAGCTTTGCCATCAGAGTTAGAAAAGATTCATAATGTATTCCACATACCGATGTTACGCGGTA
1 GTTAGCTTTGCCATCAGAGTTAGAAAAGATTCATAATGTATTCAACATACCGATGTTAAGCGGTA
* * * *
80896016 TCAATTAGATCCTTCACATGTAATATCCCCTGTTGATGTTGGAATTCAACCTAATATGATAAACA
66 TCAATTAGATCCTGCACAGGTAATATCCCCAGTTGATGTTAGAATTCAACCTAATATG---AACA
* * * *
80896081 GTGAAGAACTGATCAAAATTCTAGCTCAGGAAGTGAAAGATTTGAGAAATAAAGGTATAGCTTTA
128 GTGAAG-A-TGATCAAAACTATATCTCAGGAAGTTAAAGATTTGAGAAATAAAGGTATAGCTTTA
* * * *
80896146 GTTAAAGTTCTTTGGTAACAACATGAAATTAAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAA
191 GTTAAAGTTCTTTGGTAACAACACGGAATAAAAGAGGATGCCTGGGAACCAGAAGAAGCTATGAA
* *
80896211 AGTGCAGAAATTGAACTTATTTTCTAGTAAGATATTAAGGGACGAAAATTCCTTTAGGGGGAGAG
256 AGTGCA-AACTTGAACTTATTTTCTGGTAAGATATTAAGGGACG-AAATTCC-TTAGGGGGAGAG
* * * * * *
80896276 TTGTAACAGCCCGTTTATAGTGAAATCAGAGCAGTGGTTT-TAGGACCAAAAATTCGACAAAGCT
318 TTGTAACAG-CCGTTTATAGTG-AAT-TGGGAAGTGGTTTCGA-GACCACAAATTCGACGAAGCT
* * *
80896340 TTGTAGGGTTGAAAGTGTCAAATTCCATTAAAATGGAAATAGCTGAGCAAGAAAAAGTTATTTCG
379 TTGTAGGGTTGAAAGTGTCGAATTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTT-G
80896405 TGTTGATTTGATTTGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGAT
443 TGTTGATTTGATTTGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGAT
80896454 TGTAACATCC
Statistics
Matches: 1001, Mismatches: 160, Indels: 72
0.81 0.13 0.06
Matches are distributed among these distances:
692 10 0.01
693 277 0.28
694 288 0.29
695 1 0.00
697 3 0.00
698 8 0.01
699 3 0.00
701 1 0.00
702 164 0.16
703 242 0.24
704 4 0.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (690 bp):
GTTAGCTTTGCCATCAGAGTTAGAAAAGATTCATAATGTATTCAACATACCGATGTTAAGCGGTA
TCAATTAGATCCTGCACAGGTAATATCCCCAGTTGATGTTAGAATTCAACCTAATATGAACAGTG
AAGATGATCAAAACTATATCTCAGGAAGTTAAAGATTTGAGAAATAAAGGTATAGCTTTAGTTAA
AGTTCTTTGGTAACAACACGGAATAAAAGAGGATGCCTGGGAACCAGAAGAAGCTATGAAAGTGC
AAACTTGAACTTATTTTCTGGTAAGATATTAAGGGACGAAATTCCTTAGGGGGAGAGTTGTAACA
GCCGTTTATAGTGAATTGGGAAGTGGTTTCGAGACCACAAATTCGACGAAGCTTTGTAGGGTTGA
AAGTGTCGAATTCCATTATAATGGAAAGAGCTGAGCAAGAAAAAGTTATTTGTGTTGATTTGATT
TGAGAAACTGAAGAAAAGGTCAAAGTGATACGTGATAACTTGAAAGCAGCTTTTGATCGACAAAA
ATCTTACACAGATCTGAAAAGAAAAGATATTGAATTTCAAGTAGCGACACAGTATTTTTTGAAAG
TATTGCCTTGGAAGAAAATTCTTTGATTTGGTCAAAAGGAAAGCTTAGTTTATGGTTTATCAAGC
CATTTGAGATCATTGAGAGAACTAGGCCAGTAGCTTATTG
Found at i:80897749 original size:45 final size:41
Alignment explanation
Indices: 80897671--80897769 Score: 108
Period size: 45 Copynumber: 2.3 Consensus size: 41
80897661 AATATGTGTT
* ** * *
80897671 TTCGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTTA
1 TTCGTGTAAGACCACGTCTAGGACATTGACATCG-TAT-T-TGA
*
80897715 TTACGTGTAAGACCATGTCTAGGACATTGACATCGTATTTGA
1 TT-CGTGTAAGACCACGTCTAGGACATTGACATCGTATTTGA
80897757 TTCGTGTAAGACC
1 TTCGTGTAAGACC
80897770 CTATCTGAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
41 11 0.23
42 4 0.08
43 1 0.02
44 5 0.10
45 27 0.56
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (41 bp):
TTCGTGTAAGACCACGTCTAGGACATTGACATCGTATTTGA
Found at i:80925268 original size:702 final size:700
Alignment explanation
Indices: 80923757--80927229 Score: 3763
Period size: 702 Copynumber: 4.9 Consensus size: 700
80923747 GGGTGTTATA
* * *
80923757 GGGAACCACAAGAAGCTATGAAAGTGCAATAGTT-AACTTATTTTCTAGTAAGATTTTTTGGGAT
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTTAGGGAT
* * * * * * *
80923821 AAAAATTCCTTTTGGGGGGAGAATTGTAATAGCCCATTTTCAGTGTAGACGGAACAATGGTTTCC
66 GAAAATTCC-TTTAGGGGGAGAGTTGTAACAGCCCATTTTCAGTGAAGTC-GAATAATGGTTTCC
* * * * *
80923886 TGACCATAAATTCGATGAAGCTTTGTA-GAGTCGAAAGTGTCGAAAGTGTCAAATTTCTTTATAA
129 TGACCACAAATTCAACGAAGCTTTGTATG-GTCGAAAGTGTCG-AA---T----TTT-GTTATAC
* * * * * * *
80923950 TGGATAGAACTGAGTGAGAAAAAGTTATTAGGTGTTGATTTGATTTGAGAAACCTAAGAAAA-AG
184 TGGACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTAAGAAATC-AA-AAAATGG
* * *
80924014 TCAAAGTGATACATGATAGCTTGGAAGCAGTTTTGGATCAATAAAAATCTTACGCTGATTTGAAA
247 TCAAAGTGATACGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACG-TGATTTGAAA
* * * *
80924079 AGAAAAGATATTGAATTTCAAGTCAACAACATATTATTTCTGAAAGTATTGCCTTGGAAGAAATT
311 AGAAAAGATATTGAATTTCAAGTC-ACGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGT
* * *
80924144 TCTTTGATTTGGTCAAAAAGGAAAGCCTT-TTCCGTGGTTTATC-AGGCCGTTTGAGATCATTGA
375 TCTTTGATTTGGTCGAAAAGGAAAG-CTTAGTCTGTGGTTTATCGA-GCCGTTTGAGATCATTGA
* * * *
80924207 GAGAATTGGGCCAATAACTTATTGGTTAGCTTTGTCGTCA-ATGTTAGAAAAGATTCATAATGTA
438 GAGAATTGGGCTAGTAGCTTATTGGTTAGCTTTGCCGTCAGA-GTTAGAAAAGATTCATAATGTA
* * *
80924271 TTCCACATATCGATGTTACGACAGTATCAATTATATCCTTCACAAGTAATATCCCAAGTTGATGT
502 TTCCACATATCGATGTTACGATAGTATCAATTAGATCCTTCACAGGTAATATCCCAAGTTGATGT
* *
80924336 TGGAATTCAACCTGATATGACATACAGTGAATG-ACTGATCAAAATTCTAGCTCGGGAAGTTAAA
567 TGAAATTCAACCTGATATGACGTACAGTGAA-GAACTGATCAAAATTCTAGCTCGGGAAGTTAAA
* * * * * ** *
80924400 TATTTGAGAAATAAAGGTATAACTTTAGTTAAAGTTCTCTGGTAATGACATGGAATCGAAGAGG-
631 GAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGC
80924464 TTGCCT
696 TT-CCT
** * * * ** * *
80924470 AAGAACCAGAAAAAGCTATGAAAGTGCAATACTTGAATTTATTTTCTGGTAAGATGCTCAAGGAT
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTTAGGGAT
* * * * * * *
80924535 GAAAATTTCTTTAGGGGAAGAGTCGTAACAACCCGTTTGT-AGTGAAGTCAGAGTAATGGTTTCA
66 GAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTT-TCAGTGAAGTC-GAATAATGGTTTCC
* * * * * *
80924599 GGACCACAAATTCAATGAAGCTTTGTAGGGTCGAAAGTGTCAAATTTTGTTATAGTGGATAGAGC
129 TGACCACAAATTCAACGAAGCTTTGTATGGTCGAAAGTGTCGAATTTTGTTATACTGGACAGAGC
*
80924664 TGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTTAGAAATCAAATAAATGGTCAAAGTGATA
194 TGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTAAGAAATCAAA-AAATGGTCAAAGTGATA
** * * *
80924729 CGTGATAGCTTGAAAAAAGCTTTGGATTGATAGAAATCTTACGTAGATTTGAAAAG-AAAGATAT
258 CGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGT-GATTTGAAAAGAAAAGATAT
* * * * * *
80924793 TGAATTTCAAGTGATGACATAGTATTTTTGAAAGCATTGCCTTGGAAGGAAGTTCTTTGATTTGG
322 TGAATTTCAAGTCACGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTGG
* * ** *
80924858 TCTAAAAGGAAAGCTTAGTATGTGGTTTATTAAGCCGTTTGAGATCATTGAGAGAATTGAGCTAG
387 TCGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTAG
* * * * * *
80924923 TAGTTTATCGATTAACTTTGCTGTCAGAGTTAGAAAAGATTCATAATGTATTCAACATATCGATG
452 TAGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATCGATG
* * ** * * * *
80924988 TTATGATGGTATCAATCGGATCC-TAAGCAGGTAATATCCTAATTTGATGTTGACATTCAACCTG
517 TTACGATAGTATCAATTAGATCCTTCA-CAGGTAATATCCCAAGTTGATGTTGAAATTCAACCTG
* * * * *
80925052 ATATGATGTATAGTGAAGAACCGATCAGAATTCTAGCTCGGAAAGTTAAAGAATTGAGAAATAAA
581 ATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAA
* *
80925117 AGTATAGCTTTAGTTAAATTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCTT
646 AGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCCT
* * * * *
80925172 GGGAACCAGAAGAAGTTATGAAAGTGCAATACTTGAGCTTATTTTCTGGTAAGATTTTTGGGGAC
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTTAGGGAT
* ** * * * * ***
80925237 GAAAATTCCTTTAGGGGGAGAGTTGTAACAACCTGTTTTCTGTGAAATCGGGATAGTGGTTTTGA
66 GAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTTTCAGTGAAGTC-GAATAATGGTTTCCT
* * * * * *
80925302 GACCACAAATTCAACAAAGCTTTGTATGGTCAAAAGTTTCGAATTCTGTTATATTGGACAGAGGT
130 GACCACAAATTCAACGAAGCTTTGTATGGTCGAAAGTGTCGAATTTTGTTATACTGGACAGAGCT
* * *
80925367 GAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTCAAGAAACTGAAAAAA-GGAT-AAAGTGATA
195 GAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTAAGAAA-TCAAAAAATGG-TCAAAGTGATA
* * * * *
80925430 CATGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATGTTACCCTGATTTAAAAAGAAAATATAT
258 CGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTA-CGTGATTTGAAAAGAAAAGATAT
* * *
80925495 TGGATTTGAAGTCGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTG
322 TGAATTTCAAGTC-ACGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTG
* * * * ** * * *
80925560 ATTGAAAAGGAAAACTTAGTTTGTGGTTTATCGAGATGTTTGAAATTATTAAGAGAATTGGGCTA
386 GTCGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTA
* * * * * * ***
80925625 GTAGCTTATCGGTTAGCTTTGGCATAAGACG-TAGGAAAGATTCATAATGTATACCGTGTATCGA
451 GTAGCTTATTGGTTAGCTTTGCCGTCAGA-GTTAGAAAAGATTCATAATGTATTCCACATATCGA
** * *
80925689 TGTTACGAT-GATATTGATTAGATCCTTCACATGTAATATCCCCAA-TTGATGTTGAAATGCAAC
515 TGTTACGATAG-TATCAATTAGATCCTTCACAGGTAATAT-CCCAAGTTGATGTTGAAATTCAAC
* * * *
80925752 CTAATATGACGTACAGTGAAGAACTTATCACAATTCTAGCTTGGGAAGTTAAAGAATTGAGAAAT
578 CTGATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAAT
* * * ** *
80925817 AAAACTATAGCTTTAGCTAAAGTTCTCTAGCAATGACATGGAATAGAAGAGGCTGCCT
643 AAAAGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCCT
* * * * * *
80925875 GGGAACTAGAAGAAGCTTTGAAAGTGTAATAGTTGAACTTATTTTCTAGTAAGATTTTTTGGAAT
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTTAGGGAT
* * * *
80925940 GAAAATTCCTTTAAGGGGAGAGTTGTAATAGCCCATTTTCAGTGAAGTCGAAACAAAGGTTTCCT
66 GAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTTTCAGTGAAGTCG-AATAATGGTTTCCT
* ** * * *
80926005 GATCACAAACCCAACGAAGCTTTGCATGGTCGAAAGTGTCGAATTTCGTTAAACTGGACAGAGCT
130 GACCACAAATTCAACGAAGCTTTGTATGGTCGAAAGTGTCGAATTTTGTTATACTGGACAGAGCT
* * * * * * *
80926070 AAGCGAGAAAAAGTTATTCAGTGTTGACTTGATTTAAAAAATCGAAGAATAGGTTAAAGTGATAC
195 GAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTAAGAAATCAAAAAAT-GGTCAAAGTGATAC
* * * * *
80926135 GTGATAGCTTGAAAGAAATTTTGGATCAATAAAAATCTTATGCTGATTTGAAAAGAAAAGATCTT
259 GTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACG-TGATTTGAAAAGAAAAGATATT
* *
80926200 GAATTTCAAGTCAGCGACACAGT-TTTCTGAAAGTATTG-TTTAGGAAGAAAGTTCTTTGATTTT
323 GAATTTCAAGTCA-CGACACAGTATTTCTGAAAGTATTGCCTT-GGAAGAAAGTTCTTTGATTTG
* * * * * * * *
80926263 TTCGAAAAAGAAAGCTTAGTCTGTGGTTTATTGGGCCGCTTGAGATGATTGAGAGATTTGGGCCA
386 GTCGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTA
* * * *
80926328 GTAACTTATTTGTTAGCTTTACCATCAGAGTTAGAAAAGATTCATAATGTATTCCACATATCGAT
451 GTAGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATCGAT
* * * * * * *
80926393 GTTATGACAGTATCGATCAGATACTTCACAGGTAATATCCCCAGTTGATATTGAAATTCAACCTG
516 GTTACGATAGTATCAATTAGATCCTTCACAGGTAATATCCCAAGTTGATGTTGAAATTCAACCTG
* * * * *
80926458 ATATGACATATAGTGAAGAACTGGTCAAAATTCTAGCTCGGGAAGTTAAAGATTTGATAAAT-AA
581 ATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAA
* * * * * *
80926522 AG-GTCGCTTTAGTTAAAGTTCGT-TGGTAATGACACAGAATCGAAGAAGCTTTCT
646 AGTATAGCTTTAGTTAAAGTTC-TCTGGCAATGACACAGAATAGAAGAGGCTTCCT
* * * * **** * * *
80926576 GGGAAACAGAAGTAGCTATTAAAGTGCAATACTTGAACTTATTTTCTATTAAGATACACAAGAAC
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTTAGGGAT
** ** * *
80926641 GAAAATTCCTTTAAAGGGAGAGTTGTAACAGTGCATTTTCAGTGAAGTCAGAATAGTGGTTTCTT
66 GAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTTTCAGTGAAGTC-GAATAATGGTTTCCT
* * * ** * * * *
80926706 GACCACAAA-TCTGACGAAGTTTTCTATGGTTAAAAGTGTTGGATTTCGTTATACTAGACAGAGC
130 GACCACAAATTC-AACGAAGCTTTGTATGGTCGAAAGTGTCGAATTTTGTTATACTGGACAGAGC
* * * *
80926770 TGAGCGAGAAAAAGTTTTTCGGTGTTGATTTGATTTGAGGAACTGAAAAAATGGTCAAAGTGATA
194 TGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTT-AAGAAATCAAAAAATGGTCAAAGTGATA
* * * *
80926835 CGTGATAGTTTGAAAGCAGTTTTGGATCGACAAAAATCTTATGCAGATTTGAAAAGAAAAGATAT
258 CGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACG-TGATTTGAAAAGAAAAGATAT
* * * *
80926900 TGAATTTCAAGTCAGTGACACGGTATTTCTAAAAGTATTGCCTTGGAATAAAGTTCTTTGATTTG
322 TGAATTTCAAGTCA-CGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTG
* * * *
80926965 GCCGAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTGTTTGAGATCATTGAGAGAATTGGGCTA
386 GTCGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTA
* * * **
80927030 GTAGCTTATTGGTTAGCTTAGCCGTCAGAGTTAGAAGATATTCATAATGTATTCCATGTATCGAT
451 GTAGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATCGAT
* * * *
80927095 GTTACAACT-GTATCAATTAGATCCTTTATAGGTAATATCTCC-AGTTGATTTTGAAATTCAACC
516 GTTACGA-TAGTATCAATTAGATCCTTCACAGGTAATATC-CCAAGTTGATGTTGAAATTCAACC
* * * *
80927158 TTATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTAAAGAATTGAGAAATA
579 TGATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATA
80927223 AAAGTAT
644 AAAGTAT
80927230 CGATTCTGTT
Statistics
Matches: 2297, Mismatches: 421, Indels: 93
0.82 0.15 0.03
Matches are distributed among these distances:
700 1 0.00
701 380 0.17
702 795 0.35
703 772 0.34
704 206 0.09
705 3 0.00
709 1 0.00
712 2 0.00
713 105 0.05
714 32 0.01
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (700 bp):
GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTTTTAGGGAT
GAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTTTCAGTGAAGTCGAATAATGGTTTCCTG
ACCACAAATTCAACGAAGCTTTGTATGGTCGAAAGTGTCGAATTTTGTTATACTGGACAGAGCTG
AGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTAAGAAATCAAAAAATGGTCAAAGTGATACGT
GATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGTGATTTGAAAAGAAAAGATATTGAA
TTTCAAGTCACGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTGGTCGA
AAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTAGTAGC
TTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATCGATGTTAC
GATAGTATCAATTAGATCCTTCACAGGTAATATCCCAAGTTGATGTTGAAATTCAACCTGATATG
ACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAGTAT
AGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCCT
Found at i:80925828 original size:703 final size:703
Alignment explanation
Indices: 80923757--80927229 Score: 3638
Period size: 703 Copynumber: 4.9 Consensus size: 703
80923747 GGGTGTTATA
* * * *** * *
80923757 GGGAACCACAAGAAGCTATGAAAGTGCAATAGTT-AACTTATTTTCTAGTAAGATTTTTTGGGAT
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTCTCAAGAAC
* ** * * * * * * * * *
80923821 AAAAATTCCTTTTGGGGGGAGAATTGTAATAGCCCATTTTCAGTGTAGACGGAACAATGGTTTCC
66 GAAAATTCC-TTTAAGGGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCGAAATAATGGTTTTC
* * * * * * *
80923886 TGACCATAAATTCGATGAAGCTTTGTA-GAGTCGAAAGTGTCGAAAGTGTCAAATTTCTTTATAA
130 AGACCACAAATTCAACGAAGCTTTGTATG-GTCAAAAGTGTCG-AA-T-TC-----T-GTTATAC
* * * * *
80923950 TGGATAGAACTGAGTGAGAAAAAGTTATT-AGGTGTTGATTTGATTTGAGAAACCT-AAGAAAAA
185 TGGACAGAGCTGAGCGAGAAAAAGTTATTCA-GTGTTGATTTGATTTAAGAAA-CTGAA-AAAAG
* * *
80924013 GTCAAAGTGATACATGATAGCTTGGAAGCAGTTTTGGATCAATAAAAATCTTACGCTGATTTGAA
247 GTCAAAGTGATACGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGCTGATTTGAA
* * * * *
80924078 AAGAAAAGATATTGAATTTCAAGTCAACAACATATTATTTCTGAAAGTATTGCCTTGGAAGAAAT
312 AAGAAAAGATATTGAATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAG
** * *
80924143 TTCTTTGATTTGGTCAAAAAGGAAAGCCTT-TTCCGTGGTTTATC-AGGCCGTTTGAGATCATTG
377 TTCTTTGATTTGGTTGAAAAGGAAAG-CTTAGTCTGTGGTTTATCGA-GCCGTTTGAGATCATTG
* * * *
80924206 AGAGAATTGGGCCAATAACTTATTGGTTAGCTTTGTCGTCA-ATGTTAGAAAAGATTCATAATGT
440 AGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTTGCCGTCAGA-GTTAGAAAAGATTCATAATGT
* * *
80924270 ATTCCACATATCGATGTTACGA-CAGTATCAATTATATCCTTCACAAGTAATAT-CCCAAGTTGA
504 ATTCCACATATCGATGTTACGATGA-TATCAATTAGATCCTTCACAGGTAATATCCCCAA-TTGA
* *
80924333 TGTTGGAATTCAACCTGATATGACATACAGTGAATG-ACTGATCAAAATTCTAGCTCGGGAAGTT
567 TGTTGAAATTCAACCTGATATGACGTACAGTGAA-GAACTGATCAAAATTCTAGCTCGGGAAGTT
* * * * * ** *
80924397 AAATATTTGAGAAATAAAGGTATAACTTTAGTTAAAGTTCTCTGGTAATGACATGGAATCGAAGA
631 AAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGA
80924462 GG-TTGCCT
696 GGCTT-CCT
** * * * * * *
80924470 AAGAACCAGAAAAAGCTATGAAAGTGCAATACTTGAATTTATTTTCTGGTAAGATGCTCAAGGAT
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTCTCAAGAAC
* * *
80924535 GAAAATTTCTTT-AGGGGAAGAGTCGTAACAACCCGTTTGT-AGTGAAGTC-AGAGTAATGG-TT
66 GAAAATTCCTTTAAGGGG-AGAGTTGTAACAACCCGTTT-TCAGTGAAGTCGA-AATAATGGTTT
* * * * * * *
80924596 TCAGGACCACAAATTCAATGAAGCTTTGTAGGGTCGAAAGTGTCAAATTTTGTTATAGTGGATAG
128 TCA-GACCACAAATTCAACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCTGTTATACTGGACAG
* * *
80924661 AGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTTAGAAA-TCAAATAAATGGTCAAAGT
192 AGCTGAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTAAGAAACTGAAA-AAA-GGTCAAAGT
** * * *
80924725 GATACGTGATAGCTTGAAAAAAGCTTTGGATTGATAGAAATCTTACG-TAGATTTGAAAAG-AAA
255 GATACGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGCT-GATTTGAAAAGAAAA
* * * * * *
80924788 GATATTGAATTTCAAGTGA-TGACATAGTATTTTTGAAAGCATTGCCTTGGAAGGAAGTTCTTTG
319 GATATTGAATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTG
* **
80924852 ATTTGGTCT-AAAAGGAAAGCTTAGTATGTGGTTTATTAAGCCGTTTGAGATCATTGAGAGAATT
384 ATTTGGT-TGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATT
* * * * * * *
80924916 GAGCTAGTAGTTTATCGATTAACTTTGCTGTCAGAGTTAGAAAAGATTCATAATGTATTCAACAT
448 GGGCTAGTAGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACAT
* * ** * * *
80924981 ATCGATGTTATGATGGTATCAATCGGATCC-TAAGCAGGTAATAT-CCTAATTTGATGTTGACAT
513 ATCGATGTTACGATGATATCAATTAGATCCTTCA-CAGGTAATATCCCCAA-TTGATGTTGAAAT
* * * * *
80925044 TCAACCTGATATGATGTATAGTGAAGAACCGATCAGAATTCTAGCTCGGAAAGTTAAAGAATTGA
576 TCAACCTGATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGA
* *
80925109 GAAATAAAAGTATAGCTTTAGTTAAATTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCTT
641 GAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCCT
* * * * *** *
80925172 GGGAACCAGAAGAAGTTATGAAAGTGCAATACTTGAGCTTATTTTCTGGTAAGATTTTTGGGGAC
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTCTCAAGAAC
* * * * ** * *
80925237 GAAAATTCCTTTAGGGGGAGAGTTGTAACAACCTGTTTTCTGTGAAATCGGGATAGTGGTTTTGA
66 GAAAATTCCTTTAAGGGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCGAAATAATGGTTTTCA
* * * *
80925302 GACCACAAATTCAACAAAGCTTTGTATGGTCAAAAGTTTCGAATTCTGTTATATTGGACAGAGGT
131 GACCACAAATTCAACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCTGTTATACTGGACAGAGCT
*
80925367 GAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTCAAGAAACTGAAAAAAGGAT-AAAGTGATAC
196 GAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTAAGAAACTGAAAAAAGG-TCAAAGTGATAC
* * * * *
80925431 ATGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATGTTACCCTGATTTAAAAAGAAAATATATT
260 GTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGCTGATTTGAAAAGAAAAGATATT
* * * *
80925496 GGATTTGAAGTCGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTGA
325 GAATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTGG
* * ** * * *
80925561 TTGAAAAGGAAAACTTAGTTTGTGGTTTATCGAGATGTTTGAAATTATTAAGAGAATTGGGCTAG
390 TTGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTAG
* * * * * * ***
80925626 TAGCTTATCGGTTAGCTTTGGCATAAGACG-TAGGAAAGATTCATAATGTATACCGTGTATCGAT
455 TAGCTTATTGGTTAGCTTTGCCGTCAGA-GTTAGAAAAGATTCATAATGTATTCCACATATCGAT
** * * *
80925690 GTTACGATGATATTGATTAGATCCTTCACATGTAATATCCCCAATTGATGTTGAAATGCAACCTA
519 GTTACGATGATATCAATTAGATCCTTCACAGGTAATATCCCCAATTGATGTTGAAATTCAACCTG
* * *
80925755 ATATGACGTACAGTGAAGAACTTATCACAATTCTAGCTTGGGAAGTTAAAGAATTGAGAAATAAA
584 ATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAA
* * * ** *
80925820 ACTATAGCTTTAGCTAAAGTTCTCTAGCAATGACATGGAATAGAAGAGGCTGCCT
649 AGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCCT
* * * * * *** *
80925875 GGGAACTAGAAGAAGCTTTGAAAGTGTAATAGTTGAACTTATTTTCTAGTAAGATTTTTTGGAAT
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTCTCAAGAAC
* * * * * * *
80925940 GAAAATTCCTTTAAGGGGAGAGTTGTAATAGCCCATTTTCAGTGAAGTCGAAACAAAGGTTTCCT
66 GAAAATTCCTTTAAGGGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCGAAATAATGGTTTTCA
* ** * * *
80926005 GATCACAAACCCAACGAAGCTTTGCATGGTCGAAAGTGTCGAATT-TCGTTAAACTGGACAGAGC
131 GACCACAAATTCAACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCT-GTTATACTGGACAGAGC
* * * * *
80926069 TAAGCGAGAAAAAGTTATTCAGTGTTGACTTGATTTAA-AAAATCGAAGAATAGGTTAAAGTGAT
195 TGAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTAAGAAACT-GAA-AAAAGGTCAAAGTGAT
* * * * *
80926133 ACGTGATAGCTTGAAAGAAATTTTGGATCAATAAAAATCTTATGCTGATTTGAAAAGAAAAGATC
258 ACGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGCTGATTTGAAAAGAAAAGATA
*
80926198 TTGAATTTCAAGTCAGCGACACAGT-TTTCTGAAAGTATTG-TTTAGGAAGAAAGTTCTTTGATT
323 TTGAATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATTGCCTT-GGAAGAAAGTTCTTTGATT
* * * * * * *
80926261 T-TTTCGAAAAAGAAAGCTTAGTCTGTGGTTTATTGGGCCGCTTGAGATGATTGAGAGATTTGGG
387 TGGTT-GAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGG
* * * * *
80926325 CCAGTAACTTATTTGTTAGCTTTACCATCAGAGTTAGAAAAGATTCATAATGTATTCCACATATC
451 CTAGTAGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATC
* * * * * * *
80926390 GATGTTATGA-CAGTATCGATCAGATACTTCACAGGTAATATCCCCAGTTGATATTGAAATTCAA
516 GATGTTACGATGA-TATCAATTAGATCCTTCACAGGTAATATCCCCAATTGATGTTGAAATTCAA
* * * * *
80926454 CCTGATATGACATATAGTGAAGAACTGGTCAAAATTCTAGCTCGGGAAGTTAAAGATTTGATAAA
580 CCTGATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAA
* * * * * *
80926519 T-AAAG-GTCGCTTTAGTTAAAGTTCGT-TGGTAATGACACAGAATCGAAGAAGCTTTCT
645 TAAAAGTATAGCTTTAGTTAAAGTTC-TCTGGCAATGACACAGAATAGAAGAGGCTTCCT
* * * * * *
80926576 GGGAAACAGAAGTAGCTATTAAAGTGCAATACTTGAACTTATTTTCTATTAAGATACACAAGAAC
1 GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTCTCAAGAAC
* *** * *
80926641 GAAAATTCCTTTAAAGGGAGAGTTGTAACAGTGCATTTTCAGTGAAGTC-AGAATAGTGG-TTTC
66 GAAAATTCCTTTAAGGGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCGA-AATAATGGTTTTC
* * * * * * * *
80926704 TTGACCACAAA-TCTGACGAAGTTTTCTATGGTTAAAAGTGTTGGATT-TCGTTATACTAGACAG
130 -AGACCACAAATTC-AACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCT-GTTATACTGGACAG
* * * *
80926767 AGCTGAGCGAGAAAAAGTTTTTCGGTGTTGATTTGATTTGAGGAACTGAAAAAATGGTCAAAGTG
192 AGCTGAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTAAGAAACTGAAAAAA-GGTCAAAGTG
* * * *
80926832 ATACGTGATAGTTTGAAAGCAGTTTTGGATCGACAAAAATCTTATGCAGATTTGAAAAGAAAAGA
256 ATACGTGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGCTGATTTGAAAAGAAAAGA
* * * *
80926897 TATTGAATTTCAAGTCAGTGACACGGTATTTCTAAAAGTATTGCCTTGGAATAAAGTTCTTTGAT
321 TATTGAATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGAT
** * * *
80926962 TTGGCCGAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTGTTTGAGATCATTGAGAGAATTGGG
386 TTGGTTGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGG
* * * **
80927027 CTAGTAGCTTATTGGTTAGCTTAGCCGTCAGAGTTAGAAGATATTCATAATGTATTCCATGTATC
451 CTAGTAGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATC
* * * * * *
80927092 GATGTTACAACTG-TATCAATTAGATCCTTTATAGGTAATATCTCCAGTTGATTTTGAAATTCAA
516 GATGTTACGA-TGATATCAATTAGATCCTTCACAGGTAATATCCCCAATTGATGTTGAAATTCAA
* * * *
80927156 CCTTATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTAAAGAATTGAGAAA
580 CCTGATATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAA
80927221 TAAAAGTAT
645 TAAAAGTAT
80927230 CGATTCTGTT
Statistics
Matches: 2296, Mismatches: 411, Indels: 115
0.81 0.15 0.04
Matches are distributed among these distances:
700 8 0.00
701 381 0.17
702 774 0.34
703 785 0.34
704 208 0.09
705 1 0.00
710 1 0.00
711 1 0.00
712 9 0.00
713 96 0.04
714 32 0.01
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (703 bp):
GGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTAGTAAGATTCTCAAGAAC
GAAAATTCCTTTAAGGGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCGAAATAATGGTTTTCA
GACCACAAATTCAACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCTGTTATACTGGACAGAGCT
GAGCGAGAAAAAGTTATTCAGTGTTGATTTGATTTAAGAAACTGAAAAAAGGTCAAAGTGATACG
TGATAGCTTGAAAGCAGTTTTGGATCGATAAAAATCTTACGCTGATTTGAAAAGAAAAGATATTG
AATTTCAAGTCAGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTTTGATTTGGT
TGAAAAGGAAAGCTTAGTCTGTGGTTTATCGAGCCGTTTGAGATCATTGAGAGAATTGGGCTAGT
AGCTTATTGGTTAGCTTTGCCGTCAGAGTTAGAAAAGATTCATAATGTATTCCACATATCGATGT
TACGATGATATCAATTAGATCCTTCACAGGTAATATCCCCAATTGATGTTGAAATTCAACCTGAT
ATGACGTACAGTGAAGAACTGATCAAAATTCTAGCTCGGGAAGTTAAAGAATTGAGAAATAAAAG
TATAGCTTTAGTTAAAGTTCTCTGGCAATGACACAGAATAGAAGAGGCTTCCT
Found at i:80927691 original size:484 final size:484
Alignment explanation
Indices: 80926753--80927713 Score: 1297
Period size: 484 Copynumber: 2.0 Consensus size: 484
80926743 GTTGGATTTC
* * * * *
80926753 GTTATACTAGACAGAGCTGAGCGAGAAAAAGTTTTTCGGTGTTGATTTGATTTGAGGAACTGAAA
1 GTTATAATAGACAGAGCTAAGCGAGAAAAAGTTTTTCGGTGTTGATTTGATTTAAGAAACTCAAA
* * *
80926818 AAATGGTCAAAGTGATACGTGATAGTTTGAAAGCAGTTTTGGATCGACAAAAATCTTATGCAGAT
66 AAATGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGAT
* ** * *
80926883 TTGAAAAGAAAAGATATTGAATTTCAAGTCAGTGACACGGTATTTCTAAAAGTATTGCCTTGGAA
131 TTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAATATTTCTAAAAGGATTGCCTTAGAA
* ** * * * *
80926948 TAAAGTTCTTTGATTTGGCCGAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTGTTTGAGATCA
196 GAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTATTTAAGATCA
* * * * * * *
80927013 TTGAGAGAATTGGGCTAGTAGCTTATTGGTTAGCTTAGCCGTCAGAGTTAGAAGATATTCATAAT
261 TTGAGAGAACTAGGCCAGTAGCTTATCGGTTAGCTTAGCCGTCAGAGTTAGAAAAGATACATAAT
* * * * * *
80927078 GTATTCCATGTATCGATGTTACAACTGTATCAATTAGATCCTTTATAGGTAATATCTCCAGTTGA
326 GTATTCCATATATCGATGTTACAACAGTATCAATCAGATCCTTCACACGTAATATCTCCAGTTGA
* * * *
80927143 TTTTGAAATTCAACCTTATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTA
391 TGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCGATCAAAATTCTAGCTCGAGAAGTTA
80927208 AAGAATTGAGAAATAAAAGTATCGATTCT
456 AAGAATTGAGAAATAAAAGTATCGATTCT
* *
80927237 GTTATAATAGATAGAGCTAAGTGAGAAAAAGTTATTT-GGTGTTGATTTGATTTAAGAAAC-CAA
1 GTTATAATAGACAGAGCTAAGCGAGAAAAAGTT-TTTCGGTGTTGATTTGATTTAAGAAACTCAA
* *
80927300 ATAAATGGTCAAAGTGATACGTGATAGCTT-AAATGCAGCTTTGGATTGACAGAAATCTTACGCA
65 A-AAATGGTCAAAGTGATACGTGATAGCTTGAAA-GCAGCTTTGGATCGACAAAAATCTTACGCA
* * *
80927364 GATTTGAATAGAAAAGATATTGAATTTCAAGTC-GACGACATAATATTTCTAAAAGGATTTCCTT
128 GATTTGAAAAGAAAAGATATTGAATTTCAAGTCAG-CGACACAATATTTCTAAAAGGATTGCCTT
*
80927428 AGAAGAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCTGTGGTTTATC-TGGCTATTTAA
192 AGAAGAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCCGTGGTTTATCGT-GCTATTTAA
* ***
80927492 GATCATTGAGAGAACTAGGCCATTAGCTTATCGGTTAGCTTTTTCGTCAGAGTTAGAAAAGATAC
256 GATCATTGAGAGAACTAGGCCAGTAGCTTATCGGTTAGCTTAGCCGTCAGAGTTAGAAAAGATAC
* * * * *
80927557 ATAATGTATTCCGTATATCGATGTTTCGACAGTTTCGATCAGATCCTTCACACGTAATAT-TCCT
321 ATAATGTATTCCATATATCGATGTTACAACAGTATCAATCAGATCCTTCACACGTAATATCTCC-
* *
80927621 AGTTGATGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCTATCAAAATTCTTGCTC-AG
385 AGTTGATGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCGATCAAAATTCTAGCTCGA-
*
80927685 GAAGTTAAAGAATTGAGACATAAAAGTAT
449 GAAGTTAAAGAATTGAGAAATAAAAGTAT
80927714 AGCTTTAGTT
Statistics
Matches: 413, Mismatches: 57, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
483 12 0.03
484 398 0.96
485 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (484 bp):
GTTATAATAGACAGAGCTAAGCGAGAAAAAGTTTTTCGGTGTTGATTTGATTTAAGAAACTCAAA
AAATGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGAT
TTGAAAAGAAAAGATATTGAATTTCAAGTCAGCGACACAATATTTCTAAAAGGATTGCCTTAGAA
GAAAGTTCTTCAATTTGGACAAAAAGGAAAGCTTAGTCCGTGGTTTATCGTGCTATTTAAGATCA
TTGAGAGAACTAGGCCAGTAGCTTATCGGTTAGCTTAGCCGTCAGAGTTAGAAAAGATACATAAT
GTATTCCATATATCGATGTTACAACAGTATCAATCAGATCCTTCACACGTAATATCTCCAGTTGA
TGTTGAAATTCAACCTAATATGACGAACAGTGAAGAACCGATCAAAATTCTAGCTCGAGAAGTTA
AAGAATTGAGAAATAAAAGTATCGATTCT
Found at i:80943461 original size:40 final size:40
Alignment explanation
Indices: 80943411--80943593 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
80943401 GATTCGGATA
80943411 TATATATGGCACTTAGTGTGTG-ATTCGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGTGAATTCGA-ATAGCTTCGGC
* * *
80943451 TATATGTGGCACTTAGTGTGTGAATTGGAATATCTTCGGC
1 TATATATGGCACTTAGTGTGTGAATTCGAATAGCTTCGGC
* * * * *
80943491 TATATATGGCACTTAGTGTGCGAGA-CCAAGATAGGTTCAGC
1 TATATATGGCACTTAGTGTGTGA-ATTCGA-ATAGCTTCGGC
* * * * **
80943532 TATTTAAGGCGCTTAGTGTGCGAGATTATAATAGCTTCGGC
1 TATATATGGCACTTAGTGTGTGA-ATTCGAATAGCTTCGGC
* *
80943573 TATGTATTGGCACCTAGTGTG
1 TATATA-TGGCACTTAGTGTG
80943594 CAAGATATTG
Statistics
Matches: 115, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
40 53 0.46
41 50 0.43
42 12 0.10
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGTGAATTCGAATAGCTTCGGC
Found at i:80946508 original size:23 final size:24
Alignment explanation
Indices: 80946460--80946525 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
80946450 ACAAAATTTG
*
80946460 GAAGTTCACAAAGAACCATATCAA
1 GAAGCTCACAAAGAACCATATCAA
* *
80946484 GAAGCTTACAAAGATCC-TATCAA
1 GAAGCTCACAAAGAACCATATCAA
*
80946507 GAAGCTCACAAAGAGCCAT
1 GAAGCTCACAAAGAACCAT
80946526 GTAACGGGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 21 0.58
24 15 0.42
ACGTcount: A:0.45, C:0.23, G:0.15, T:0.17
Consensus pattern (24 bp):
GAAGCTCACAAAGAACCATATCAA
Found at i:80947991 original size:53 final size:54
Alignment explanation
Indices: 80947795--80947997 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 54
80947785 GGGTTTAAGT
* * * **
80947795 ATACCAAGTAAGACCATGCCAATG-CATGG-AATTGTTAAGTTTTATAAGGCAAGG
1 ATACCATGTAAGACCATGTCAA-GACATGGCAA-TGGTAAGTTCGATAAGGCAAGG
* * * * * * *
80947849 AAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAG
1 ATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCGATAAGGCAAGG
* * * *
80947904 ATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAGG
* **
80947957 ATACCACGTAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 ATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
80947998 TAAAAAGGAA
Statistics
Matches: 117, Mismatches: 29, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 45 0.38
54 29 0.25
55 43 0.37
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
ATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAGG
Found at i:80958963 original size:6 final size:6
Alignment explanation
Indices: 80958951--80959013 Score: 99
Period size: 6 Copynumber: 10.5 Consensus size: 6
80958941 CAAAGAAGAA
*
80958951 AAGGAG AAAGAG AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG
1 AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG AAGGAG
* *
80958999 AAGAAG AAGAAG AAG
1 AAGGAG AAGGAG AAG
80959014 ACCCTCCTGC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (6 bp):
AAGGAG
Found at i:80959014 original size:6 final size:6
Alignment explanation
Indices: 80958930--80959014 Score: 68
Period size: 6 Copynumber: 14.3 Consensus size: 6
80958920 ATGGTTAACT
* * *
80958930 GAAGAA GAAGACA -AAGAA GAA-AA GGAGAA -AGAGAA GGAGAA GGAGAA
1 GAAGAA GAAGA-A GAAGAA GAAGAA GAAGAA GA-AGAA GAAGAA GAAGAA
* * * *
80958977 GGAGAA GGAGAA GGAGAA GGAGAA GAAGAA GAAGAA GA
1 GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GA
80959015 CCCTCCTGCT
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
5 5 0.07
6 64 0.91
7 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.40, T:0.00
Consensus pattern (6 bp):
GAAGAA
Found at i:80959068 original size:21 final size:21
Alignment explanation
Indices: 80959044--80959103 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
80959034 CAACGTGGCA
* * *
80959044 AGTTAATTGGCCACGTCAGTT
1 AGTTAACTAGCCACGTCAGCT
*
80959065 AGTTAACTAGCCACATCAGCT
1 AGTTAACTAGCCACGTCAGCT
80959086 AGTTAACTAGCCACGTCA
1 AGTTAACTAGCCACGTCA
80959104 ACTGTCCCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (21 bp):
AGTTAACTAGCCACGTCAGCT
Found at i:80960648 original size:25 final size:24
Alignment explanation
Indices: 80960606--80960657 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
80960596 CACAAACGCA
80960606 GCTCTTTATGAGCGTCCTAATATAG
1 GCTCTTTATGAGCGTCCTAATAT-G
* ** *
80960631 GCTCTTTGTGAGTTTCCTGATATG
1 GCTCTTTATGAGCGTCCTAATATG
80960655 GCT
1 GCT
80960658 TACTTGAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTAATATG
Found at i:80963982 original size:6 final size:5
Alignment explanation
Indices: 80963932--80963981 Score: 73
Period size: 5 Copynumber: 9.4 Consensus size: 5
80963922 TGTGTGCTCC
80963932 TTATT TTATT TTATCT TTATCT TTATCT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTAT-T TTAT-T TTAT-T TTATT TTATT TTATT TTATT
80963980 TT
1 TT
80963982 TTCACAAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 27 0.61
6 17 0.39
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:80971071 original size:2 final size:2
Alignment explanation
Indices: 80971064--80971088 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80971054 AAATCTTCCT
80971064 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
80971089 CAGTTTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80980999 original size:47 final size:48
Alignment explanation
Indices: 80980928--80981020 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 48
80980918 TGAATAGTGT
* * *
80980928 CACCAAAATCGCAGATAAACTGCCA-ATAATCAATATCGTGGACAAGC
1 CACCAAAATCGCAAATAAACTGCCACATAATCAAAATCGTGAACAAGC
* *
80980975 CACCAAAATCGCAAATATATTGCCACATAATCAAAATCGTGAACAA
1 CACCAAAATCGCAAATAAACTGCCACATAATCAAAATCGTGAACAA
80981021 TGTCACATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 22 0.55
48 18 0.45
ACGTcount: A:0.45, C:0.25, G:0.12, T:0.18
Consensus pattern (48 bp):
CACCAAAATCGCAAATAAACTGCCACATAATCAAAATCGTGAACAAGC
Found at i:80984463 original size:68 final size:69
Alignment explanation
Indices: 80984353--80984881 Score: 362
Period size: 68 Copynumber: 7.8 Consensus size: 69
80984343 ACGTGATTTA
* * * ** * *
80984353 AGCGTGATCTTAAATCACCGTGCTATGTAAATTAGTTGTGATCTTAAAACAATAG-GCTGTAAGA
1 AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAAGA
80984417 TAGG
66 TAGG
* * * * * *
80984421 AGCGTGATCTTAAATCAGCATCCTATGTAGATTAACCATGATCTTAAATCAA-CGAACTGTAAGA
1 AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAAGA
*
80984485 TATG
66 TAGG
* ** * * * *
80984489 AGCGTGATCTTAAATTGGCGTGCTATGTAGATTAGCCTTGATCTTAAATCAATAG-TCTATAAAA
1 AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAAGA
80984553 TAAGG
66 T-AGG
* * ** ** * *
80984558 -GCGCGATCTTAAAT-TGACGTGCTATGTAAATTAGTTGTGATCTTAAATC-AGCGAGCTATAAG
1 AGCGCGATCTTAAATCAG-CGTGCTATGTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAAG
80984620 ATAGG
65 ATAGG
* * * * * * * * *
80984625 AGTGCGATCTTAAATCGGTGTGCTATAT-GAGTTAACCATGATATTAAATCAGT-GAATTGTAAG
1 AGCGCGATCTTAAATCAGCGTGCTATGTAGA-TTAGCCGTGATCTTAAATCAATAGAACTGTAAG
80984688 ATAGG
65 ATAGG
* * ** * *
80984693 AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTCAATTAGCAG-ACTATAAAA
1 AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAAGA
**
80984757 TACA
66 TAGG
* * * * * * * * ** * **
80984761 AGTGTGATCTGAAAT-TGATGTGATATAG-AAATTAGTCACGATCTTAAATCAGT-GGGCTGTAA
1 AGCGCGATCTTAAATCAG-CGTGCTAT-GTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAA
80984823 GATAGG
64 GATAGG
** * *
80984829 AGCGTAATCTTAAATCAGTGTGCTATGTAGGTTAGCCGTGATCTTAAATCAAT
1 AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAAT
80984882 GGACTATAAA
Statistics
Matches: 353, Mismatches: 92, Indels: 32
0.74 0.19 0.07
Matches are distributed among these distances:
67 11 0.03
68 333 0.94
69 9 0.03
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (69 bp):
AGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAATAGAACTGTAAGA
TAGG
Found at i:80984599 original size:136 final size:136
Alignment explanation
Indices: 80984353--80985048 Score: 465
Period size: 136 Copynumber: 5.1 Consensus size: 136
80984343 ACGTGATTTA
** * * * *
80984353 AGCGTGATCTTAAATCACCGTGCTATGTAAATTAG-TTGTGATCTTAAAACAATAGGCTGTAAGA
1 AGCGTGATCTTAAATCGGCGTGCTATGTAGATTAGCCT-TGATCTTAAATCAATAGTCTGTAAGA
* * * * * *
80984417 TAGGAGCGTGATCTTAAATCAGCATCCTATGTAGATTAACCATGATCTTAAATCAACGAACTGTA
65 TAGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAACGAACTATA
*
80984482 AGATATG
130 AGATAGG
* * *
80984489 AGCGTGATCTTAAATTGGCGTGCTATGTAGATTAGCCTTGATCTTAAATCAATAGTCTATAAAAT
1 AGCGTGATCTTAAATCGGCGTGCTATGTAGATTAGCCTTGATCTTAAATCAATAGTCTGTAAGAT
* * ** * *
80984554 AAGG-GCGCGATCTTAAAT-TGACGTGCTATGTAAATTAGTTGTGATCTTAAATCAGCGAGCTAT
66 -AGGAGCGCGATCTTAAATCAG-CGTGCTATGTAGATTAGCCGTGATCTTAAATCAACGAACTAT
80984617 AAGATAGG
129 AAGATAGG
* * * * * * * * *
80984625 AGTGCGATCTTAAATCGGTGTGCTATAT-GAGTTAACCATGATATTAAATCAGTGAAT-TGTAAG
1 AGCGTGATCTTAAATCGGCGTGCTATGTAGA-TTAGCCTTGATCTTAAATCAAT-AGTCTGTAAG
* * *
80984688 ATAGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTCAATTAGC-AGACTA
64 ATAGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAACGA-ACTA
* **
80984752 TAAAATACA
128 TAAGATAGG
* * * ** * * * ** * * *
80984761 AGTGTGATCTGAAATTGATGTGATATAG-AAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGA
1 AGCGTGATCTTAAATCGGCGTGCTAT-GTAGATTAGCCTTGATCTTAAATCAATAGTCTGTAAGA
** * * * *
80984825 TAGGAGCGTAATCTTAAATCAGTGTGCTATGTAGGTTAGCCGTGATCTTAAATCAATGGACTATA
65 TAGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAACGAACTATA
* *
80984890 AAACAAGG
130 AGA-TAGG
** * * * * * * * * * * *
80984898 -GCGCAATCTTAAATTGGTGTACTATGTAAATTAGTCGTGATATTAAATTAGCT-GGCTGTAAGG
1 AGCGTGATCTTAAATCGGCGTGCTATGTAGATTAGCCTTGATCTTAAATCA-ATAGTCTGTAAGA
** * * ** * * * * * * * *
80984961 TATAAGTGTGATCTTAAATTGGCATGCTATGTAGGTGAGTCGTGATATTAAATTAGCAAACTATA
65 TAGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAACGAACTATA
*
80985026 AAATAGG
130 AGATAGG
*
80985033 GGCGTGATCTTAAATC
1 AGCGTGATCTTAAATC
80985049 ACTAACTCTA
Statistics
Matches: 441, Mismatches: 103, Indels: 32
0.77 0.18 0.06
Matches are distributed among these distances:
135 11 0.02
136 420 0.95
137 10 0.02
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (136 bp):
AGCGTGATCTTAAATCGGCGTGCTATGTAGATTAGCCTTGATCTTAAATCAATAGTCTGTAAGAT
AGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTAAATCAACGAACTATAA
GATAGG
Found at i:80984909 original size:204 final size:202
Alignment explanation
Indices: 80984356--80984981 Score: 601
Period size: 204 Copynumber: 3.1 Consensus size: 202
80984346 TGATTTAAGC
* * *** * * *
80984356 GTGATCTTAAA-TCACCGTGCTATGTAAATTAGTTGTGATCTTAAAACAATAGGCTGTAAGATAG
1 GTGATCTTAAATTGA-CGTGATATGTAAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGATAG
** * * *
80984420 GAGCGTGATCTTAAATCAGCATCCTATGTAGATTAACCATGATCTTAAATCAACGAACTGTAAGA
65 GAGCGTGATCTTAAATCAGTGTGCTATGTAGGTTAACCATGATCTTAAATCAATGAACTGTAAGA
* * * * * ** *
80984485 TATGAGCGTGATCTTAAATTGGCGTGCTATGTAGATTAGCCTTGATCTTAAATCAATAGTCTATA
130 -AAGGGCGCGATCTTAAATTGGCGTGCTATGTAGATTAGCCGTGATCTTAAATTAGCAGACTATA
* *
80984550 AAATAAGGGC
194 AAATAA-AGT
* * *** * * *
80984560 GCGATCTTAAATTGACGTGCTATGTAAATTAGTTGTGATCTTAAATCAGCGAGCTATAAGATAGG
1 GTGATCTTAAATTGACGTGATATGTAAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGATAGG
* * * * * * *
80984625 AGTGCGATCTTAAATCGGTGTGCTATAT-GAGTTAACCATGATATTAAATCAGTGAATTGTAAGA
66 AGCGTGATCTTAAATCAGTGTGCTATGTAG-GTTAACCATGATCTTAAATCAATGAACTGTAAGA
* ** *
80984689 TAGGAGCGCGATCTTAAATCAGCGTGCTATGTAGATTAGCCGTGATCTTCAATTAGCAGACTATA
130 AAGG-GCGCGATCTTAAATTGGCGTGCTATGTAGATTAGCCGTGATCTTAAATTAGCAGACTATA
80984754 AAATACAAGT
194 AAATA-AAGT
* *
80984764 GTGATCTGAAATTGATGTGATATAG-AAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGATAG
1 GTGATCTTAAATTGACGTGATAT-GTAAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGATAG
* * * * * *
80984828 GAGCGTAATCTTAAATCAGTGTGCTATGTAGGTTAGCCGTGATCTTAAATCAATGGACTATAAAA
65 GAGCGTGATCTTAAATCAGTGTGCTATGTAGGTTAACCATGATCTTAAATCAATGAACTGTAAGA
* * * * * * * * *
80984893 CAAGGGCGCAATCTTAAATTGGTGTACTATGTAAATTAGTCGTGATATTAAATTAGCTGGCTGTA
130 -AAGGGCGCGATCTTAAATTGGCGTGCTATGTAGATTAGCCGTGATCTTAAATTAGCAGACTATA
**
80984958 AGGTATAAGT
194 AAATA-AAGT
80984968 GTGATCTTAAATTG
1 GTGATCTTAAATTG
80984982 GCATGCTATG
Statistics
Matches: 341, Mismatches: 74, Indels: 14
0.79 0.17 0.03
Matches are distributed among these distances:
203 2 0.01
204 331 0.97
205 8 0.02
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (202 bp):
GTGATCTTAAATTGACGTGATATGTAAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGATAGG
AGCGTGATCTTAAATCAGTGTGCTATGTAGGTTAACCATGATCTTAAATCAATGAACTGTAAGAA
AGGGCGCGATCTTAAATTGGCGTGCTATGTAGATTAGCCGTGATCTTAAATTAGCAGACTATAAA
ATAAAGT
Found at i:80984923 original size:68 final size:68
Alignment explanation
Indices: 80984372--80984945 Score: 316
Period size: 68 Copynumber: 8.4 Consensus size: 68
80984362 TTAAATCACC
* ** * * * * *
80984372 GTGCTATGTAAATTAGTTGTGATCTTAAAACAATAGG-CTGTAAGATAGGAGCGTGATCTTAAAT
1 GTGCTATGTAGATTAGCCGTGATCTTAAATCAAT-GGACTATAAAAAAGGAGCGCGATCTTAAAT
** *
80984436 CAGC
65 TGGT
* * * * * * * * * * *
80984440 ATCCTATGTAGATTAACCATGATCTTAAATCAACGAACTGTAAGATATGAGCGTGATCTTAAATT
1 GTGCTATGTAGATTAGCCGTGATCTTAAATCAATGGACTATAAAAAAGGAGCGCGATCTTAAATT
*
80984505 GGC
66 GGT
* * *
80984508 GTGCTATGTAGATTAGCCTTGATCTTAAATCAATAGTCTATAAAATAAGG-GCGCGATCTTAAAT
1 GTGCTATGTAGATTAGCCGTGATCTTAAATCAATGGACTATAAAA-AAGGAGCGCGATCTTAAAT
**
80984572 TGAC
65 TGGT
* ** * * *
80984576 GTGCTATGTAAATTAGTTGTGATCTTAAATC-A-GCGAGCTATAAGATAGGAGTGCGATCTTAAA
1 GTGCTATGTAGATTAGCCGTGATCTTAAATCAATG-GA-CTATAAAAAAGGAGCGCGATCTTAAA
*
80984639 TCGGT
64 TTGGT
* * * * * * * * * *
80984644 GTGCTATAT-GAGTTAACCATGATATTAAATCAGTGAATTGTAAGATAGGAGCGCGATCTTAAAT
1 GTGCTATGTAGA-TTAGCCGTGATCTTAAATCAATGGACTATAAAAAAGGAGCGCGATCTTAAAT
** *
80984708 CAGC
65 TGGT
* * *** * ** * * *
80984712 GTGCTATGTAGATTAGCCGTGATCTTCAATTAGCAGACTATAAAATACAAGTGTGATCTGAAATT
1 GTGCTATGTAGATTAGCCGTGATCTTAAATCAATGGACTATAAAAAAGGAGCGCGATCTTAAATT
*
80984777 GAT
66 GGT
* * * ** * * * * * **
80984780 GTGATATAG-AAATTAGTCACGATCTTAAATCAGTGGGCTGTAAGATAGGAGCGTAATCTTAAAT
1 GTGCTAT-GTAGATTAGCCGTGATCTTAAATCAATGGACTATAAAAAAGGAGCGCGATCTTAAAT
**
80984844 CAGT
65 TGGT
* *
80984848 GTGCTATGTAGGTTAGCCGTGATCTTAAATCAATGGACTATAAAACAAGG-GCGCAATCTTAAAT
1 GTGCTATGTAGATTAGCCGTGATCTTAAATCAATGGACTATAAAA-AAGGAGCGCGATCTTAAAT
80984912 TGGT
65 TGGT
* * * *
80984916 GTACTATGTAAATTAGTCGTGATATTAAAT
1 GTGCTATGTAGATTAGCCGTGATCTTAAAT
80984946 TAGCTGGCTG
Statistics
Matches: 381, Mismatches: 113, Indels: 24
0.74 0.22 0.05
Matches are distributed among these distances:
67 8 0.02
68 363 0.95
69 9 0.02
70 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (68 bp):
GTGCTATGTAGATTAGCCGTGATCTTAAATCAATGGACTATAAAAAAGGAGCGCGATCTTAAATT
GGT
Found at i:80995348 original size:46 final size:44
Alignment explanation
Indices: 80995246--80995465 Score: 212
Period size: 46 Copynumber: 4.8 Consensus size: 44
80995236 GGTAGTATGC
* *
80995246 CGATGTCATGTCCCAGACATGGTCTCACACTGGCTCATCTCGT-A-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-T-TCTTAAGGT
* *
80995292 CGATGCATGTCTCGGACATGTCTTACACTGGCTTACTTCTTAAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-T-CTTCTTAAGGT
* * * *
80995338 CGATGTATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC-T-TCTTAAGGT
*
80995384 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTTCTTAA---GGT
*
80995432 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
80995466 ACAATAACCC
Statistics
Matches: 147, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 16 0.11
45 21 0.14
46 62 0.42
47 27 0.18
48 21 0.14
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTTCTTAAGGT
Found at i:80995418 original size:94 final size:88
Alignment explanation
Indices: 80995246--80995466 Score: 248
Period size: 94 Copynumber: 2.4 Consensus size: 88
80995236 GGTAGTATGC
* * * * *
80995246 CGATGTCATGTCCCAGACATGGTCTCACACTGGCTCATCTCGTAGTCGATGCATGTCTCGGACAT
1 CGATGT-ATGTCCCAGACAT-GTCTTACACTAGCTCATCTCATAGTCGATGCATGTCCCAGACAT
*
80995311 GTCTTACACTGGCTTACTTCTTAA-GGT
64 GTCTTACACTGGC-T-C-TCATAATGGT
*
80995338 CGATGTATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCA-ATGTCGATGCCATGTCCCAGAC
1 CGATGTATGTCCCAGACATGTCTTACACTAGCTC--ATCTCATA-GTCGATG-CATGTCCCAGAC
80995402 ATGGTCTTACACTGGCTCTCATAATGTGGT
62 AT-GTCTTACACTGGCTCTCATAA--TGGT
*
80995432 CGATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 CGATGTATGTCCCAGACATGTCTTACACTAGCTCA
80995467 CAATAACCCG
Statistics
Matches: 112, Mismatches: 9, Indels: 16
0.82 0.07 0.12
Matches are distributed among these distances:
90 13 0.12
91 19 0.17
92 18 0.16
93 13 0.12
94 49 0.44
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (88 bp):
CGATGTATGTCCCAGACATGTCTTACACTAGCTCATCTCATAGTCGATGCATGTCCCAGACATGT
CTTACACTGGCTCTCATAATGGT
Found at i:81001850 original size:46 final size:45
Alignment explanation
Indices: 81001765--81001987 Score: 222
Period size: 46 Copynumber: 4.8 Consensus size: 45
81001755 GGTAAGATGC
* *
81001765 CGATGCCATGTCCCAGAGATGGTCTTACACTA-CCT-CATCTCATAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCA-AGT
* *
81001811 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTC-AAGT
*
81001857 CGATGCATGTCCCACACATGTCTTACACTAGCTCTA-ATCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAA-GT
* * * *
81001903 CGATGCCATGTCCCAGACATGGTCTTATACTGGCTTTCAT-T-ATGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCAAGT
*
81001948 GGCCGATGCATGTCCTAGACATGTCTTACACTAGCTTACA
1 ---CGATGCATGTCCCAGACATGTCTTACACTAGCTTACA
81001988 ATAACCCGTA
Statistics
Matches: 150, Mismatches: 16, Indels: 22
0.80 0.09 0.12
Matches are distributed among these distances:
44 11 0.07
45 18 0.12
46 71 0.47
47 31 0.21
48 19 0.13
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGT
Found at i:81001956 original size:94 final size:92
Alignment explanation
Indices: 81001763--81001983 Score: 279
Period size: 94 Copynumber: 2.4 Consensus size: 92
81001753 GGGGTAAGAT
* *
81001763 GCCGATGCCATGTCCCAGAGATGGTCTTACACTA-C-CTCATCTCATAGTCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAATCTCATAGTCGATGCATGTCCCAG
81001826 ACATGTCTTACACTAGCTTACATCTCGAG
64 ACATGTCTTACACTAGCTTACATCTCGAG
*
81001855 GCCGATGCATGTCCCACACATGTCTTACACTAGCTCTAATCTCA-ATGTCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAATCTCATA-GTCGATG-CATGTCCCAG
* * * * *
81001919 ACATGGTCTTATACTGGCTTTCAT-TATGTG
64 ACAT-GTCTTACACTAGCTTACATCT-CGAG
*
81001949 GCCGATGCATGTCCTAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
81001984 TACAATAACC
Statistics
Matches: 113, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
90 11 0.10
91 14 0.12
92 22 0.19
93 15 0.13
94 51 0.45
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAATCTCATAGTCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTTACATCTCGAG
Found at i:81024725 original size:26 final size:26
Alignment explanation
Indices: 81024696--81024756 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
81024686 ATGTTTAAAT
*
81024696 ACAATCATAC-ATCACATAGGGGCAAA
1 ACAATCAT-CTATCACAGAGGGGCAAA
* *
81024722 ACAATCATCTTATCATAGAGGGGCATA
1 ACAATCATC-TATCACAGAGGGGCAAA
81024749 ACAATCAT
1 ACAATCAT
81024757 TTTATCAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 8 0.27
27 21 0.70
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.21
Consensus pattern (26 bp):
ACAATCATCTATCACAGAGGGGCAAA
Found at i:81030649 original size:44 final size:44
Alignment explanation
Indices: 81030601--81030687 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
81030591 ATAAGATAGT
81030601 ACCCTTTAAAAACCATAAACACTTCATTGAATTTTCATTAGAGA
1 ACCCTTTAAAAACCATAAACACTTCATTGAATTTTCATTAGAGA
81030645 ACCCTTTAAAAACCATAAACACTTCATTGAATTTTCATTAGAG
1 ACCCTTTAAAAACCATAAACACTTCATTGAATTTTCATTAGAG
81030688 CCATAGGTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (44 bp):
ACCCTTTAAAAACCATAAACACTTCATTGAATTTTCATTAGAGA
Found at i:81032887 original size:27 final size:27
Alignment explanation
Indices: 81032857--81033076 Score: 196
Period size: 27 Copynumber: 8.1 Consensus size: 27
81032847 TACCGTACAG
* *
81032857 GGGTGTTTCTGTAATTTTATAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*
81032884 GGGTATTTCATTAATTTTATAAATC-A
1 GGGTATTTCAGTAATTTTATAAATCGA
*
81032910 GGGGTATTTCAGTAATTTTACAAATCGA
1 -GGGTATTTCAGTAATTTTATAAATCGA
* *
81032938 GGGTATTTCAGTAATTTTACAAGTCG-
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
81032964 GGAGTATTTCGGTAATTTCATAAATCAA
1 GG-GTATTTCAGTAATTTTATAAATCGA
* * * *
81032992 TGGTATTTCGGTAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTATAAATCGA
* * * *
81033018 GGGGTATTTCAATAATTTCACAAATCAA
1 -GGGTATTTCAGTAATTTTATAAATCGA
* * *
81033046 GGGTATCTC-GATAATTTTACAAATCGG
1 GGGTATTTCAG-TAATTTTATAAATCGA
81033073 GGGT
1 GGGT
81033077 CTTAACAATC
Statistics
Matches: 165, Mismatches: 21, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
26 4 0.02
27 158 0.96
28 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:81032913 original size:54 final size:54
Alignment explanation
Indices: 81032854--81033076 Score: 252
Period size: 54 Copynumber: 4.1 Consensus size: 54
81032844 TCCTACCGTA
* * * * * * *
81032854 CAGGGGTGTTTCTGTAATTTTATAAATCGAGGGTATTTCATTAATTTTATAAAT
1 CAGGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTCAGTAATTTTACAAAT
* * *
81032908 CAGGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAGT
1 CAGGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTCAGTAATTTTACAAAT
* * * * *
81032962 C-GGGAGTATTTCGGTAATTTCATAAATCAATGGTATTTCGGTAATTTCACAAAT
1 CAGGG-GTATTTCAGTAATTTCACAAATCAAGGGTATTTCAGTAATTTTACAAAT
* *
81033016 CAGGGGTATTTCAATAATTTCACAAATCAAGGGTATCTC-GATAATTTTACAAAT
1 CAGGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTCAG-TAATTTTACAAAT
*
81033070 CGGGGGT
1 CAGGGGT
81033077 CTTAACAATC
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
53 4 0.03
54 138 0.95
55 3 0.02
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (54 bp):
CAGGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTCAGTAATTTTACAAAT
Found at i:81032980 original size:81 final size:80
Alignment explanation
Indices: 81032854--81033076 Score: 243
Period size: 81 Copynumber: 2.8 Consensus size: 80
81032844 TCCTACCGTA
* * *
81032854 CAGGGGTGTTTCTGTAATTTTATAAATCGAGGGTATTTC-ATTAATTTTATAAATCAGGGGTATT
1 CAGGGGTATTTCAGTAATTTTACAAATCG-GGGTATTTCGA-TAATTTTATAAATCAGGGGTATT
*
81032918 TCAGTAATTTTACAAAT
64 TCAGTAATTTCACAAAT
* * * **
81032935 C-GAGGGTATTTCAGTAATTTTACAAGTCGGGAGTATTTCGGTAATTTCATAAATCAATGGTATT
1 CAG-GGGTATTTCAGTAATTTTACAAATCGGG-GTATTTCGATAATTTTATAAATCAGGGGTATT
*
81032999 TCGGTAATTTCACAAAT
64 TCAGTAATTTCACAAAT
* * * * * *
81033016 CAGGGGTATTTCAATAATTTCACAAATCAAGGGTATCTCGATAATTTTACAAATCGGGGGT
1 CAGGGGTATTTCAGTAATTTTACAAATC-GGGGTATTTCGATAATTTTATAAATCAGGGGT
81033077 CTTAACAATC
Statistics
Matches: 116, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
80 3 0.03
81 110 0.95
82 3 0.03
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (80 bp):
CAGGGGTATTTCAGTAATTTTACAAATCGGGGTATTTCGATAATTTTATAAATCAGGGGTATTTC
AGTAATTTCACAAAT
Found at i:81033427 original size:18 final size:17
Alignment explanation
Indices: 81033397--81033431 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
81033387 TTACCCACGC
81033397 GGGCCCACAGGCCCATT
1 GGGCCCACAGGCCCATT
*
81033414 GGGCCCATACGGCCCATT
1 GGGCCCACA-GGCCCATT
81033432 TAACCCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.40, G:0.29, T:0.14
Consensus pattern (17 bp):
GGGCCCACAGGCCCATT
Found at i:81034798 original size:11 final size:11
Alignment explanation
Indices: 81034782--81034813 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
81034772 CCAACTCCCC
81034782 ATTCAAATTCA
1 ATTCAAATTCA
*
81034793 ATTCAAATTTA
1 ATTCAAATTCA
81034804 ATTCAAATTC
1 ATTCAAATTC
81034814 TTATAGCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTCAAATTCA
Found at i:81036789 original size:22 final size:22
Alignment explanation
Indices: 81036764--81036814 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
81036754 TTTGGCGCAA
81036764 AGCCATAGTCAAGATGGCACAG
1 AGCCATAGTCAAGATGGCACAG
** * * *
81036786 AGCCATTTTTAGGTTGGCACAG
1 AGCCATAGTCAAGATGGCACAG
81036808 AGCCATA
1 AGCCATA
81036815 ATCAGATTGC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
AGCCATAGTCAAGATGGCACAG
Found at i:81037228 original size:27 final size:27
Alignment explanation
Indices: 81037198--81037249 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
81037188 ACGATCATTT
*
81037198 TACCCTACAGGGGTATTTCGGTAATCC
1 TACCCCACAGGGGTATTTCGGTAATCC
81037225 TACCCCACAGGGGTATTTCGGTAAT
1 TACCCCACAGGGGTATTTCGGTAAT
81037250 TTTATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (27 bp):
TACCCCACAGGGGTATTTCGGTAATCC
Found at i:81037263 original size:27 final size:27
Alignment explanation
Indices: 81037205--81037390 Score: 162
Period size: 27 Copynumber: 6.9 Consensus size: 27
81037195 TTTTACCCTA
** **
81037205 CAGGGGTATTTCGGTAATCCTACCCCA-
1 CAGGGGTATTTCGGTAATTTTA-CAAAT
*
81037232 CAGGGGTATTTCGGTAATTTTATAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* ** *
81037259 TAGGGGTATTTTTGTAATTTTACAAGT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * *
81037286 CA-AGATATTTTGGTAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
** *
81037312 C-GGGTGTATTTTAGTAATTTTACAAGT
1 CAGGG-GTATTTCGGTAATTTTACAAAT
* *
81037339 CGGGGGTATTTCGGTAATTTCACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* *
81037366 CAAGGGTATTTCGATAATTTTACAA
1 CAGGGGTATTTCGGTAATTTTACAA
81037391 CCTGGGATAT
Statistics
Matches: 128, Mismatches: 27, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
26 23 0.18
27 102 0.80
28 3 0.02
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAAAT
Found at i:81037321 original size:53 final size:53
Alignment explanation
Indices: 81037238--81037390 Score: 166
Period size: 53 Copynumber: 2.8 Consensus size: 53
81037228 CCCACAGGGG
* * *
81037238 TATTTCGGTAATTTTATAAATTAGGGGTATTTTTGTAATTTTACAAGTC-AAGA
1 TATTTCGGTAATTTTACAAA-TCGGGGTATTTTAGTAATTTTACAAGTCGAAGA
* ** *
81037291 TATTTTGGTAATTTTACAAATCGGGTGTATTTTAGTAATTTTACAAGTCGGGGG
1 TATTTCGGTAATTTTACAAATCGGG-GTATTTTAGTAATTTTACAAGTCGAAGA
* * *
81037345 TATTTCGGTAATTTCACAAATCAAGGGTA-TTTCGATAATTTTACAA
1 TATTTCGGTAATTTTACAAATC-GGGGTATTTTAG-TAATTTTACAA
81037391 CCTGGGATAT
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
52 4 0.05
53 44 0.52
54 35 0.41
55 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (53 bp):
TATTTCGGTAATTTTACAAATCGGGGTATTTTAGTAATTTTACAAGTCGAAGA
Found at i:81037424 original size:80 final size:80
Alignment explanation
Indices: 81037245--81037425 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
81037235 GGGTATTTCG
* ** * * * *
81037245 GTAATTTTAT-AAATTAGGGGTATTTTTGTAATTTTACAAGTCAAGATATTTTGGTAATTTTACA
1 GTAATTTT-TCAAATTGGGGGTATTTCGGTAATTTCACAAATCAAGATATTTCGATAATTTTACA
*
81037309 AATCGGGTGTATTTTA
65 AATCGGGTATATTTTA
* * * *
81037325 GTAATTTTACAAGTCGGGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTCGATAATTTTAC-
1 GTAATTTTTCAAATTGGGGGTATTTCGGTAATTTCACAAATCAA-GATATTTCGATAATTTTACA
*
81037389 AACCTGGG-ATATTTTA
65 AATC-GGGTATATTTTA
81037405 GTAATTTTTCAAATTGGGGGT
1 GTAATTTTTCAAATTGGGGGT
81037426 CTTAACGACC
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
80 63 0.77
81 19 0.23
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (80 bp):
GTAATTTTTCAAATTGGGGGTATTTCGGTAATTTCACAAATCAAGATATTTCGATAATTTTACAA
ATCGGGTATATTTTA
Found at i:81039166 original size:6 final size:6
Alignment explanation
Indices: 81039157--81039188 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
81039147 CCAACTCCCC
81039157 ATTCAA ATTC-A ATTCAA ATTC-A ATTCAA ATTC
1 ATTCAA ATTCAA ATTCAA ATTCAA ATTCAA ATTC
81039189 TTATGACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.42
6 14 0.58
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (6 bp):
ATTCAA
Found at i:81039173 original size:11 final size:11
Alignment explanation
Indices: 81039157--81039188 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
81039147 CCAACTCCCC
81039157 ATTCAAATTCA
1 ATTCAAATTCA
81039168 ATTCAAATTCA
1 ATTCAAATTCA
81039179 ATTCAAATTC
1 ATTCAAATTC
81039189 TTATGACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTCAAATTCA
Found at i:81043791 original size:46 final size:46
Alignment explanation
Indices: 81043724--81043899 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
81043714 TGTAACCCGC
* *
81043724 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
81043770 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* *
81043820 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
81043863 TCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81043900 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:81043843 original size:93 final size:93
Alignment explanation
Indices: 81043731--81043902 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81043721 CGCCCATAAG
* *
81043731 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81043796 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACAAGTTCAGATGCCTAGTTACATCTCA
* *
81043824 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81043889 ACAAGTTCGGATGC
66 ACAAGTTCAGATGC
81043903 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCAGATGCCTAGTTACATCTCA
Found at i:81051404 original size:93 final size:93
Alignment explanation
Indices: 81051292--81051460 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
81051282 CGCCCATAAG
* *
81051292 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81051357 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
*
81051385 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81051450 ACAAGTTCGGA
66 ACAAGTTCGGA
81051461 CGCTCAACCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:81051460 original size:46 final size:46
Alignment explanation
Indices: 81051285--81051461 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
81051275 TGTAACCCGC
* * *
81051285 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81051331 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
81051381 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81051424 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGAC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAC
81051462 GCTCAACCAT
Statistics
Matches: 111, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81064494 original size:6 final size:6
Alignment explanation
Indices: 81064483--81064512 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
81064473 AAATGAAATG
81064483 TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
81064513 AAATAGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:81064742 original size:12 final size:12
Alignment explanation
Indices: 81064725--81064749 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81064715 GAATGTTATG
81064725 TTTTAATATATT
1 TTTTAATATATT
81064737 TTTTAATATATT
1 TTTTAATATATT
81064749 T
1 T
81064750 GAAAGTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTAATATATT
Found at i:81068663 original size:49 final size:49
Alignment explanation
Indices: 81068358--81068645 Score: 440
Period size: 49 Copynumber: 5.9 Consensus size: 49
81068348 TATATAATCC
* * * *
81068358 AATGTACCTAATTTA-AATTACAAAGTTTGTTCCTCA-TTTTAATGTTGT
1 AATGTATCTAATTTATGATCACAAAGTTTGTTCC-AAGTTTTAATGTTGT
*
81068406 AATGTACCTAATTTATGATCACAAAGTTTGTTCCAAGTTTTAATGTTGT
1 AATGTATCTAATTTATGATCACAAAGTTTGTTCCAAGTTTTAATGTTGT
81068455 AATGTATCTAATTTATGA-CAACAAAGTTTGTTCCAAGTTTTAATGTTGT
1 AATGTATCTAATTTATGATC-ACAAAGTTTGTTCCAAGTTTTAATGTTGT
* * *
81068504 AATGTATTTAATTTATGATCACAAAGTTTATTCTAAGTTTTAATGTTGT
1 AATGTATCTAATTTATGATCACAAAGTTTGTTCCAAGTTTTAATGTTGT
*
81068553 AATGTATCTAATTTATGATCACAAAGTTTGTTCCAAGTTTTAATATTGT
1 AATGTATCTAATTTATGATCACAAAGTTTGTTCCAAGTTTTAATGTTGT
81068602 AATGTATCTAATTTATGA-CTACAAAGTTTGTTCCAAGTTTTAAT
1 AATGTATCTAATTTATGATC-ACAAAGTTTGTTCCAAGTTTTAAT
81068646 ATTACAATTA
Statistics
Matches: 224, Mismatches: 11, Indels: 9
0.92 0.05 0.04
Matches are distributed among these distances:
48 18 0.08
49 205 0.92
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.45
Consensus pattern (49 bp):
AATGTATCTAATTTATGATCACAAAGTTTGTTCCAAGTTTTAATGTTGT
Found at i:81071398 original size:49 final size:49
Alignment explanation
Indices: 81071364--81071476 Score: 154
Period size: 49 Copynumber: 2.3 Consensus size: 49
81071354 CATGCCAATT
* * *
81071364 AAATTATATAAAAAATAAATCTAATAAACCTAAAACACATATGACAAAC
1 AAATTACATAAAAAATAAATCTAATAAACCTAAAACAAACATGACAAAC
* * * * *
81071413 AAATTACATAAAGATTAAATCTAATAAACCTAAAACACACATGAAAAAT
1 AAATTACATAAAAAATAAATCTAATAAACCTAAAACAAACATGACAAAC
81071462 AAATTACATAAAAAA
1 AAATTACATAAAAAA
81071477 AATAAAACAT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.62, C:0.13, G:0.03, T:0.22
Consensus pattern (49 bp):
AAATTACATAAAAAATAAATCTAATAAACCTAAAACAAACATGACAAAC
Found at i:81077181 original size:15 final size:15
Alignment explanation
Indices: 81077163--81077193 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
81077153 ATAACTAAAG
81077163 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
81077178 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
81077193 A
1 A
81077194 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:81092132 original size:22 final size:22
Alignment explanation
Indices: 81092107--81092151 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
81092097 TTTACATAGG
81092107 AACTTACTAAGCTATATAGCTT
1 AACTTACTAAGCTATATAGCTT
81092129 AACTTACTAAGCTATATAGCTT
1 AACTTACTAAGCTATATAGCTT
81092151 A
1 A
81092152 CTCCGCTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (22 bp):
AACTTACTAAGCTATATAGCTT
Found at i:81094473 original size:14 final size:14
Alignment explanation
Indices: 81094454--81094486 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
81094444 AAACCCAGAA
81094454 CTTGCTCTACCATT
1 CTTGCTCTACCATT
81094468 CTTGCTCTACCATT
1 CTTGCTCTACCATT
*
81094482 ATTGC
1 CTTGC
81094487 CCTTTCAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.33, G:0.09, T:0.42
Consensus pattern (14 bp):
CTTGCTCTACCATT
Found at i:81096318 original size:7 final size:7
Alignment explanation
Indices: 81096306--81096371 Score: 53
Period size: 7 Copynumber: 8.6 Consensus size: 7
81096296 ATTTACTTAT
81096306 TATAATA
1 TATAATA
81096313 TATAATA
1 TATAATA
81096320 TAATATATA
1 T-ATA-ATA
81096329 TACTTAATA
1 TA--TAATA
*
81096338 -ATTAAGA
1 TA-TAATA
81096345 TATAATA
1 TATAATA
81096352 TTATAATA
1 -TATAATA
81096360 TTATAATA
1 -TATAATA
81096368 TATA
1 TATA
81096372 TTTTTTAACT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
7 21 0.41
8 21 0.41
9 7 0.14
10 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (7 bp):
TATAATA
Found at i:81096333 original size:30 final size:31
Alignment explanation
Indices: 81096293--81096371 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 31
81096283 TTTTATTTAT
*
81096293 TATATTTACTTATTATAATATATA-ATATAA
1 TATATATACTTATTATAATATATAGATATAA
81096323 TATATATACTTA--ATAAT-TA-AGATATAA
1 TATATATACTTATTATAATATATAGATATAA
*
81096350 TAT-TATA-ATATTATAATATATA
1 TATATATACTTATTATAATATATA
81096372 TTTTTTAACT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
25 2 0.05
26 5 0.12
27 16 0.38
28 7 0.17
29 1 0.02
30 11 0.26
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (31 bp):
TATATATACTTATTATAATATATAGATATAA
Found at i:81096358 original size:8 final size:8
Alignment explanation
Indices: 81096303--81096368 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
81096293 TATATTTACT
81096303 TATTATAA
1 TATTATAA
81096311 TA-TATAA
1 TATTATAA
*
81096318 TATAAT-A
1 TATTATAA
81096325 TATATACTTAA
1 TAT-TA--TAA
*
81096336 TAAT-TAA
1 TATTATAA
*
81096343 GA-TATAA
1 TATTATAA
81096350 TATTATAA
1 TATTATAA
81096358 TATTATAA
1 TATTATAA
81096366 TAT
1 TAT
81096369 ATATTTTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
6 1 0.02
7 19 0.41
8 21 0.46
10 2 0.04
11 3 0.07
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (8 bp):
TATTATAA
Found at i:81111971 original size:40 final size:40
Alignment explanation
Indices: 81111927--81112158 Score: 324
Period size: 40 Copynumber: 5.8 Consensus size: 40
81111917 ATAACCACAA
81111927 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
81111967 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
81112007 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
81112047 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
81112087 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
81112127 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
81112159 CATTCAAATG
Statistics
Matches: 165, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 152 0.92
41 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:81112034 original size:80 final size:80
Alignment explanation
Indices: 81111907--81112157 Score: 432
Period size: 80 Copynumber: 3.1 Consensus size: 80
81111897 TCTTCGGAAT
* * * * * * *
81111907 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
81111971 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
81111986 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
81112051 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
81112066 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
81112131 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
81112146 TTAGCCCGGATA
1 TTAGCCCGGATA
81112158 TCATTCAAAT
Statistics
Matches: 164, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 4 0.02
80 160 0.98
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:81120407 original size:3 final size:3
Alignment explanation
Indices: 81120399--81120426 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
81120389 CAACATTCTA
81120399 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
81120427 TATGGAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:81122112 original size:42 final size:42
Alignment explanation
Indices: 81122053--81122174 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
81122043 TAGCGTTTGT
* *
81122053 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATG
1 TGAGATCACATGTAAGACCATATCTGGGATATGACATCGATG
* * * *
81122095 TGAGA-CTTCGTGTAAGACCATAACTGGGCTATTGACATCGATG
1 TGAGATC-ACATGTAAGACCATATCTGGGATA-TGACATCGATG
* *
81122138 TGAGATCACATGTCAGACCATATCTGAGATATGACAT
1 TGAGATCACATGTAAGACCATATCTGGGATATGACAT
81122175 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 31 0.48
43 33 0.51
44 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
TGAGATCACATGTAAGACCATATCTGGGATATGACATCGATG
Found at i:81137696 original size:28 final size:28
Alignment explanation
Indices: 81137656--81137726 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
81137646 CATAGTAAGT
*
81137656 TCACACACTTAGTGCT-TAATAATCAAAC
1 TCACACACTTAGTGCTAT-ACAATCAAAC
*
81137684 TCACACACTTAGTGCTATACAATTAAAC
1 TCACACACTTAGTGCTATACAATCAAAC
* *
81137712 TCGCACGCTTAGTGC
1 TCACACACTTAGTGC
81137727 CAATCTCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (28 bp):
TCACACACTTAGTGCTATACAATCAAAC
Found at i:81141335 original size:42 final size:41
Alignment explanation
Indices: 81141276--81141393 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 41
81141266 CAGGGTTAGT
81141276 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCAATG
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGACATCAATG
* * * * *
81141318 TGAGACTTCGTGTAAGACCATACCTAGGCTATTGGCATCGATG
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGACATCAATG
* * * *
81141361 TGAGATCCCATATAAGACCATATCTGAGATATG
1 TGAGAT-TCGTGTAAGACCATATCTGGGATATG
81141394 GCACTGGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGACATCAATG
Found at i:81143070 original size:43 final size:42
Alignment explanation
Indices: 81142927--81143098 Score: 170
Period size: 43 Copynumber: 4.1 Consensus size: 42
81142917 GGCTATCGAG
81142927 ATGTGATTACATGTAAGACCATGT-TGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
* * **
81142968 ATTGTGATTACCTATAAGACCATGTCTGGGACATTGGCATCAT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
*** * *
81143011 CAT-TCGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATTGAT
1 -ATGT-GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T
* * * *
81143055 ATGTGATAACATGTAAGACTATATCTGGGATA-TGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
81143096 ATG
1 ATG
81143099 AGCCTTATGT
Statistics
Matches: 105, Mismatches: 20, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
41 5 0.05
42 30 0.29
43 67 0.64
44 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
Found at i:81151058 original size:43 final size:43
Alignment explanation
Indices: 81150962--81151127 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
81150952 ATCGAGATGT
* *
81150962 GATTACATGTAAGACCATGT-TGGGACATTGGCATTGTATTGT
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTATTGC
81151004 GATTACCTGTAAGACCATGTCTGGGACATTGGCATCAT-TATT-C
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCAT--TGTATTGC
*** * * * *
81151047 GATTTTGTGTAAGACCCTGTCTGGGACAGTAGCATTG-ATATGT
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGC
* * * * *
81151090 GATAACATGTAAGACTATATCTGGGATA-TGGCATTGTA
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTA
81151128 CGAGCCTTAT
Statistics
Matches: 99, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
41 3 0.03
42 27 0.27
43 64 0.65
44 4 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTATTGC
Found at i:81151185 original size:310 final size:310
Alignment explanation
Indices: 81150617--81151226 Score: 959
Period size: 310 Copynumber: 2.0 Consensus size: 310
81150607 CTTAGGATAG
* *
81150617 GATACAAATGTCATGACATTAGGTTATCGAGATGTGACTACATGTAAAATCATGTTGGGACATTG
1 GATACAAATGTCATGACATTAGGCTATCGAGATGTGACTACATGTAAAACCATGTTGGGACATTG
* *
81150682 GCATTGTATTGTGAATACGTGCAAGACCATGTATGGGACATTGGCATCGTTATTCGATTTTGTGT
66 GCATTGTATTGTGAATACCTGCAAGACCATGTATGGGACATTGGCATCATTATTCGATTTTGTGT
* *
81150747 AAGACCCTGCCTAAGACAGTGGCATCGATATGTGATAACATGTAATACCATATCTGGGATATGGC
131 AAGACCCTGCCTAAGACAGTAGCATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
* ** *
81150812 ATTGTACGAGCTTTATGTGATTCCAAGTATCCTTAACAATTCTGAATGGTTCAAAGGGCAAAGAT
196 ATTGTACGAGCCTTATGTGATTCCAAGTATCCTTAACAATTCCAAATGGTTCAAAGGGCAAAGAC
81150877 AAATTGAGAAAGAATGTGTTAATAACTTAAATAACTCAGGAATAGTATAA
261 AAATTGAGAAAGAATGTGTTAATAACTTAAATAACTCAGGAATAGTATAA
* * *
81150927 GATACGAATGTCATGACATTAGGCTATCGAGATGTGATTACATGTAAGACCATGTTGGGACATTG
1 GATACAAATGTCATGACATTAGGCTATCGAGATGTGACTACATGTAAAACCATGTTGGGACATTG
* * *
81150992 GCATTGTATTGTGATTACCTGTAAGACCATGTCTGGGACATTGGCATCATTATTCGATTTTGTGT
66 GCATTGTATTGTGAATACCTGCAAGACCATGTATGGGACATTGGCATCATTATTCGATTTTGTGT
* ** * *
81151057 AAGACCCTGTCTGGGACAGTAGCATTGATATGTGATAACATGTAAGACTATATCTGGGATATGGC
131 AAGACCCTGCCTAAGACAGTAGCATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
** * * *
81151122 ATTGTACGAGCCTTATGTGATTCTGAGTATCCTTCACGATTCCAAATGGTTCAACGGGCAAAGAC
196 ATTGTACGAGCCTTATGTGATTCCAAGTATCCTTAACAATTCCAAATGGTTCAAAGGGCAAAGAC
* * *
81151187 AAGTTGAGAAAGAATGTGTTAATGAGTTAAATAACTCAGG
261 AAATTGAGAAAGAATGTGTTAATAACTTAAATAACTCAGG
81151227 TATGTACGAG
Statistics
Matches: 271, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
310 271 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (310 bp):
GATACAAATGTCATGACATTAGGCTATCGAGATGTGACTACATGTAAAACCATGTTGGGACATTG
GCATTGTATTGTGAATACCTGCAAGACCATGTATGGGACATTGGCATCATTATTCGATTTTGTGT
AAGACCCTGCCTAAGACAGTAGCATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
ATTGTACGAGCCTTATGTGATTCCAAGTATCCTTAACAATTCCAAATGGTTCAAAGGGCAAAGAC
AAATTGAGAAAGAATGTGTTAATAACTTAAATAACTCAGGAATAGTATAA
Found at i:81153952 original size:27 final size:27
Alignment explanation
Indices: 81153922--81153976 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
81153912 TAGGTAATCC
81153922 TCGAGCAATGTTATCTTTAAAGGAACT
1 TCGAGCAATGTTATCTTTAAAGGAACT
**
81153949 TCGAGTGATGTTATCTTTAAAGGAACT
1 TCGAGCAATGTTATCTTTAAAGGAACT
81153976 T
1 T
81153977 GTGCATGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (27 bp):
TCGAGCAATGTTATCTTTAAAGGAACT
Found at i:81157234 original size:36 final size:36
Alignment explanation
Indices: 81157187--81157259 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
81157177 TTCATGAAAG
*
81157187 TAAGAAGAATTCTCTTGTAATCAAATGACAATTGGA
1 TAAGAAGAATTCTCTTGTAATCAAATAACAATTGGA
81157223 TAAGAAGAATTCTCTTGTAATCAAATAACAATTGGA
1 TAAGAAGAATTCTCTTGTAATCAAATAACAATTGGA
81157259 T
1 T
81157260 TGTCCTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (36 bp):
TAAGAAGAATTCTCTTGTAATCAAATAACAATTGGA
Found at i:81162187 original size:21 final size:20
Alignment explanation
Indices: 81162159--81162198 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
81162149 TAGTACACGG
*
81162159 CCTAACCATACGGGCGCGTC
1 CCTAACCAGACGGGCGCGTC
*
81162179 CCTAGACCAGATGGGCGCGT
1 CCTA-ACCAGACGGGCGCGT
81162199 GAGCCCTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.20, C:0.35, G:0.30, T:0.15
Consensus pattern (20 bp):
CCTAACCAGACGGGCGCGTC
Found at i:81163889 original size:30 final size:30
Alignment explanation
Indices: 81163813--81163898 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
81163803 TTCAGCTCAC
*
81163813 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
*
81163843 GAG-TATAATCC-CAGCTCAACTTTAGCTTAAG
1 GAGCTA-AA-CCTTAGCTCAACTTTAGCTT-AG
* *
81163874 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
81163899 CAAACCTGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
29 11 0.24
30 28 0.61
31 7 0.15
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAG
Found at i:81166381 original size:15 final size:14
Alignment explanation
Indices: 81166361--81166406 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 14
81166351 AAGAAACGAA
81166361 AAGAAAAAGCAAAAG
1 AAGAAAAAG-AAAAG
81166376 AAGAAAAAGAAAATG
1 AAGAAAAAGAAAA-G
*
81166391 AAATAAAAAGAAAAG
1 -AAGAAAAAGAAAAG
81166406 A
1 A
81166407 GAGGCAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 5 0.18
15 11 0.39
16 12 0.43
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (14 bp):
AAGAAAAAGAAAAG
Found at i:81166506 original size:24 final size:25
Alignment explanation
Indices: 81166479--81166548 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 25
81166469 AAAGCAAAAA
*
81166479 GAAAAAGAAAAAGAAAATGAGA-TT
1 GAAAAAGAAAAAGAAAATGAAATTT
* *
81166503 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAATTT
** *
81166527 GAAAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
81166549 AAAAATTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
23 3 0.08
24 29 0.81
25 4 0.11
ACGTcount: A:0.64, C:0.01, G:0.23, T:0.11
Consensus pattern (25 bp):
GAAAAAGAAAAAGAAAATGAAATTT
Found at i:81166510 original size:30 final size:31
Alignment explanation
Indices: 81166474--81166559 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 31
81166464 CTTTGAAAGC
* *
81166474 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAAAGTG
* * *
81166504 AAAAAGAGAACG-AAAAGAAATTTGAAAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAAAGTG
* *
81166534 AAAAAGAAGATGAAAAA-AAAT-TGAAA
1 AAAAAGAAAAAGAAAAAGAAATATGAAA
81166560 CATAAGGAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
29 13 0.28
30 29 0.63
31 4 0.09
ACGTcount: A:0.67, C:0.01, G:0.20, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAAAGTG
Found at i:81170262 original size:13 final size:13
Alignment explanation
Indices: 81170246--81170277 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
81170236 AAAAAGTATT
*
81170246 AAAAAATTTTGAA
1 AAAAAATTTCGAA
81170259 AAAAAATTTCGAA
1 AAAAAATTTCGAA
81170272 AAAAAA
1 AAAAAA
81170278 GGTGTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (13 bp):
AAAAAATTTCGAA
Found at i:81171214 original size:21 final size:20
Alignment explanation
Indices: 81171180--81171234 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
81171170 ACATTCTTGT
81171180 AAAGAGAAAACAAAGAAAAG-A
1 AAAGA-AAAACAAA-AAAAGAA
*
81171201 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAA-CAAAAAAAGAA
81171222 AAAG-AAAACAAAA
1 AAAGAAAAACAAAA
81171235 TAAAAAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
19 5 0.16
20 12 0.39
21 14 0.45
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAGAAAAACAAAAAAAGAA
Found at i:81171222 original size:15 final size:14
Alignment explanation
Indices: 81171191--81171229 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
81171181 AAGAGAAAAC
81171191 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
81171207 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
81171222 AAAGAAAA
1 AAAGAAAA
81171230 CAAAATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 4 0.18
17 5 0.23
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:81171246 original size:26 final size:26
Alignment explanation
Indices: 81171186--81171246 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
81171176 TTGTAAAGAG
* *
81171186 AAAACAAAG-AAAAGAAAAGAAAAAGC
1 AAAAGAAAGAAAAAGAAAACAAAAA-C
81171212 AAAAG-AAGAAAAAGAAAACAAAATA-
1 AAAAGAAAGAAAAAGAAAACAAAA-AC
81171237 AAAAGAAAGA
1 AAAAGAAAGA
81171247 GAGGCAAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
25 8 0.27
26 21 0.70
27 1 0.03
ACGTcount: A:0.79, C:0.05, G:0.15, T:0.02
Consensus pattern (26 bp):
AAAAGAAAGAAAAAGAAAACAAAAAC
Found at i:81171357 original size:30 final size:30
Alignment explanation
Indices: 81171321--81171403 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
81171311 CATTGAAAGC
*
81171321 AAAAAGAAAAAGAAAAAGAAAATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAAATGAGAGTG
* * *
81171351 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAA-ATGAGAGTG
* * *
81171381 AAAAAGAAGATGAAAAAAAAAAT
1 AAAAAGAAAAAGAAAAAGAAAAT
81171404 TGAAACAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
29 8 0.19
30 27 0.64
31 7 0.17
ACGTcount: A:0.67, C:0.01, G:0.20, T:0.11
Consensus pattern (30 bp):
AAAAAGAAAAAGAAAAAGAAAATGAGAGTG
Found at i:81171375 original size:24 final size:24
Alignment explanation
Indices: 81171326--81171395 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
81171316 AAAGCAAAAA
*
81171326 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
81171350 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAA-TT
* ** *
81171374 GAGAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
81171396 AAAAAAATTG
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 3 0.09
24 28 0.80
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:81175115 original size:14 final size:13
Alignment explanation
Indices: 81175098--81175130 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
81175088 AAAAAAGTAT
*
81175098 AAAAAACTTTCGA
1 AAAAAAATTTCGA
81175111 AAAAAAATTTCGA
1 AAAAAAATTTCGA
81175124 AAAAAAA
1 AAAAAAA
81175131 GGTGTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.67, C:0.09, G:0.06, T:0.18
Consensus pattern (13 bp):
AAAAAAATTTCGA
Found at i:81176065 original size:21 final size:20
Alignment explanation
Indices: 81176031--81176096 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 20
81176021 ACATTCTTGT
81176031 AAAGAGAAAACAAAGAAAAG-A
1 AAAGA-AAAACAAA-AAAAGAA
*
81176052 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAA-CAAAAAAAGAA
*
81176073 AAAGAAAACAAAATAAAAAGAA
1 AAAGAAAA-ACAA-AAAAAGAA
81176095 AA
1 AA
81176097 GAGAGGCAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 8 0.21
21 20 0.53
22 10 0.26
ACGTcount: A:0.79, C:0.05, G:0.15, T:0.02
Consensus pattern (20 bp):
AAAGAAAAACAAAAAAAGAA
Found at i:81176066 original size:6 final size:5
Alignment explanation
Indices: 81176042--81176098 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
81176032 AAGAGAAAAC
* * *
81176042 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACA AAATAA
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAAGA AAA-GA
81176089 AAAGA AAAGA
1 AAAGA AAAGA
81176099 GAGGCAAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
4 3 0.07
5 26 0.60
6 14 0.33
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:81176091 original size:25 final size:25
Alignment explanation
Indices: 81176046--81176094 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
81176036 GAAAACAAAG
*
81176046 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAACAAAAA-CAAAAGAAGA
81176072 AAAAGAAAACAAAATA-AAAAGAA
1 AAAAGAAAACAAAA-ACAAAAGAA
81176095 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 13 0.62
27 1 0.05
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (25 bp):
AAAAGAAAACAAAAACAAAAGAAGA
Found at i:81176188 original size:12 final size:12
Alignment explanation
Indices: 81176173--81176197 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81176163 CATTGAAAGC
81176173 AAAAAGAAAATG
1 AAAAAGAAAATG
81176185 AAAAAGAAAATG
1 AAAAAGAAAATG
81176197 A
1 A
81176198 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:81176209 original size:30 final size:30
Alignment explanation
Indices: 81176173--81176255 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 30
81176163 CATTGAAAGC
*
81176173 AAAAAGAAAATGAAAAAGAAAATGAGATTG
1 AAAAAGAAAATGAAAAAGAAAATGAGAGTG
* * *
81176203 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAA-ATGAGAGTG
* *
81176233 AAAAAGAAGATGAAAAAAAAAAT
1 AAAAAGAAAATGAAAAAGAAAAT
81176256 TTAAACAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
29 8 0.19
30 27 0.64
31 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.20, T:0.12
Consensus pattern (30 bp):
AAAAAGAAAATGAAAAAGAAAATGAGAGTG
Found at i:81178568 original size:30 final size:30
Alignment explanation
Indices: 81178492--81178577 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
81178482 TTCAGCTCAC
*
81178492 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
1 GAGCTAAAGCTTAGCTCAACTTTAGCTTAG
* *
81178522 GAG-TATAGTCTCAGCTCAACTTTAGCTTAAG
1 GAGCTAAAG-CTTAGCTCAACTTTAGCTT-AG
*
81178553 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAAGCTTAGCTCAACTTTAGCT
81178578 CAAACCCAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 11 0.23
30 29 0.62
31 7 0.15
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (30 bp):
GAGCTAAAGCTTAGCTCAACTTTAGCTTAG
Found at i:81195640 original size:49 final size:49
Alignment explanation
Indices: 81195568--81195748 Score: 254
Period size: 49 Copynumber: 3.7 Consensus size: 49
81195558 CTAGTACGCA
* * * *
81195568 TAGTAGCCTGTATTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
81195617 TAGTAGCATGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
*
81195667 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
81195716 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
81195749 TCATAATAGA
Statistics
Matches: 114, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
49 71 0.62
50 43 0.38
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:81195739 original size:99 final size:99
Alignment explanation
Indices: 81195568--81195749 Score: 319
Period size: 99 Copynumber: 1.8 Consensus size: 99
81195558 CTAGTACGCA
* * *
81195568 TAGTAGCCTGTATTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCATGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCATGCACTTA
81195633 GTACTACACACGCGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
*
81195667 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCATGCACTTA
*
81195732 GTACTACACACGTGACCT
66 GTACTACACACGCGACCT
81195750 CATAATAGAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 78 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCATGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:81200552 original size:29 final size:29
Alignment explanation
Indices: 81200510--81200572 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
81200500 CAAGTTTGTG
*
81200510 ATGTGAATTGATGAATATGAATAGAGATA
1 ATGTGAATTGATGAATATGAACAGAGATA
* *
81200539 ATGTGACTTGATGAATATGAACAGAGATG
1 ATGTGAATTGATGAATATGAACAGAGATA
81200568 ATGTG
1 ATGTG
81200573 CATTAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (29 bp):
ATGTGAATTGATGAATATGAACAGAGATA
Found at i:81207508 original size:29 final size:29
Alignment explanation
Indices: 81207466--81207524 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
81207456 AGCACACGAG
81207466 TAGAGACACGGGAGTGTGTCTCAGTCGTA
1 TAGAGACACGGGAGTGTGTCTCAGTCGTA
81207495 TAGAGACACGGGAGTGTGTCTCAGTCGTA
1 TAGAGACACGGGAGTGTGTCTCAGTCGTA
81207524 T
1 T
81207525 GGATGGCACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TAGAGACACGGGAGTGTGTCTCAGTCGTA
Found at i:81208573 original size:18 final size:19
Alignment explanation
Indices: 81208546--81208584 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
81208536 TGTAAGTTTC
81208546 AAAAATTGGAAATAGAAAT
1 AAAAATTGGAAATAGAAAT
*
81208565 AAAAA-TGGAAATGGAAAT
1 AAAAATTGGAAATAGAAAT
81208583 AA
1 AA
81208585 TAAAGAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (19 bp):
AAAAATTGGAAATAGAAAT
Found at i:81208795 original size:26 final size:26
Alignment explanation
Indices: 81208747--81208808 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
81208737 ACATATTTTC
** * **
81208747 TCAAAATTTTATTAGGGGCAAAATTG
1 TCAAAATTTTACCAAGGGCAAAATCA
*
81208773 TCAAAATTTTACCAAGGGTAAAATCA
1 TCAAAATTTTACCAAGGGCAAAATCA
81208799 TCAAAATTTT
1 TCAAAATTTT
81208809 GTTGAGGGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACCAAGGGCAAAATCA
Found at i:81216808 original size:40 final size:40
Alignment explanation
Indices: 81216763--81216850 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
81216753 CGTCTTCATG
* * * *
81216763 ACCCGTGTTCCCCATACGGCCAGGACACGCTCGTGTCTCA
1 ACCCGTGTTCCCCACACGACCAGGACACGCCCATGTCTCA
81216803 ACCCGTGTTCCCCACACGACCAGGACACGCCCATGTCTCA
1 ACCCGTGTTCCCCACACGACCAGGACACGCCCATGTCTCA
81216843 ACCCGTGT
1 ACCCGTGT
81216851 GCAAAAACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.19, C:0.42, G:0.20, T:0.18
Consensus pattern (40 bp):
ACCCGTGTTCCCCACACGACCAGGACACGCCCATGTCTCA
Found at i:81222234 original size:39 final size:39
Alignment explanation
Indices: 81222180--81222494 Score: 549
Period size: 39 Copynumber: 8.1 Consensus size: 39
81222170 GAAATGTGTA
*
81222180 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
81222219 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCATGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
81222258 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
81222297 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* *
81222336 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
81222375 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
81222414 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* *
81222453 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
81222492 TGG
1 TGG
81222495 TAATAAAATT
Statistics
Matches: 267, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 267 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
Found at i:81227995 original size:21 final size:21
Alignment explanation
Indices: 81227971--81228013 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
81227961 CTGGAACAGG
*
81227971 ATACGAGGTGTTACCGGACTT
1 ATACGAGGTGTTACCGAACTT
81227992 ATACGAGGTGTTACCGAACTT
1 ATACGAGGTGTTACCGAACTT
81228013 A
1 A
81228014 AGCACATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (21 bp):
ATACGAGGTGTTACCGAACTT
Found at i:81229592 original size:96 final size:96
Alignment explanation
Indices: 81229428--81229601 Score: 235
Period size: 96 Copynumber: 1.8 Consensus size: 96
81229418 GTGAATTGTC
* * * *
81229428 GATGCCATGTACCAAACATGGTCTTACACTAGCACACATATCGACGCCGATGCCGTGTCCTAGAC
1 GATGCCATGTACCAAACATGGTCTTACACTAGCACACATATCGACGCCAACGCCATGTCCCAGAC
*
81229493 ATGGTCTTACACTGACTCTCACAACATTGCT
66 ATGGTCTAACACTGACTCTCACAACATTGCT
* * * *
81229524 GATGCCATGTTCCAAACATGGTCTTACACT-GGATCTCATATTGTA-GCCAACGCCATGTCCCAG
1 GATGCCATGTACCAAACATGGTCTTACACTAGCA-CACATATCG-ACGCCAACGCCATGTCCCAG
81229587 ACATGGTCTAACACT
64 ACATGGTCTAACACT
81229602 AGCGCACATA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 2 0.03
96 64 0.96
97 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
GATGCCATGTACCAAACATGGTCTTACACTAGCACACATATCGACGCCAACGCCATGTCCCAGAC
ATGGTCTAACACTGACTCTCACAACATTGCT
Found at i:81231216 original size:37 final size:37
Alignment explanation
Indices: 81231166--81231276 Score: 204
Period size: 37 Copynumber: 3.0 Consensus size: 37
81231156 TTTGAAAGTA
81231166 GAAATTAAATTAATTAGTCATCGCATTTTTATTGAGC
1 GAAATTAAATTAATTAGTCATCGCATTTTTATTGAGC
* *
81231203 GAAATTAAATTAATTACTCATCTCATTTTTATTGAGC
1 GAAATTAAATTAATTAGTCATCGCATTTTTATTGAGC
81231240 GAAATTAAATTAATTAGTCATCGCATTTTTATTGAGC
1 GAAATTAAATTAATTAGTCATCGCATTTTTATTGAGC
81231277 AAGACAATTG
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (37 bp):
GAAATTAAATTAATTAGTCATCGCATTTTTATTGAGC
Found at i:81232556 original size:22 final size:23
Alignment explanation
Indices: 81232529--81232572 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
81232519 TAATTGAGTG
* *
81232529 AATTAATTAAAT-TTATTTTAAT
1 AATTAAATAAATAATATTTTAAT
81232551 AATTAAATAAATAATATTTTAA
1 AATTAAATAAATAATATTTTAA
81232573 GAAATAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTAAATAAATAATATTTTAAT
Found at i:81237618 original size:17 final size:17
Alignment explanation
Indices: 81237598--81237640 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
81237588 AAATTAATTT
*
81237598 TTTTAAATATAAAAATA
1 TTTTAAATATAAAAAAA
81237615 TTTTAAAATATAAAAAAA
1 TTTT-AAATATAAAAAAA
*
81237633 TTCTAAAT
1 TTTTAAAT
81237641 TTCAATGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTTAAATATAAAAAAA
Found at i:81239371 original size:16 final size:17
Alignment explanation
Indices: 81239347--81239381 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81239337 TATTATAATT
81239347 TTATAATATAATAATAG
1 TTATAATATAATAATAG
*
81239364 TTAT-ATATATTAATAG
1 TTATAATATAATAATAG
81239380 TT
1 TT
81239382 TGTCATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (17 bp):
TTATAATATAATAATAG
Found at i:81255798 original size:41 final size:42
Alignment explanation
Indices: 81255697--81255814 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
81255687 GTACCAATGG
* *
81255697 CATATCCCAGATATGGTCTTACATGTAATCTCCTATAGATGC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGC
* * * *
81255739 CAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG-TGT
1 C-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATAGATGC
*
81255781 CATATCCCAGATATGGTCTTACATGTAAATCTCA
1 CATATCCCAGATATGGTCTTACACGT-AATCTCA
81255815 GTAACCCTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 21 0.33
42 11 0.17
43 31 0.49
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGC
Found at i:81257455 original size:19 final size:19
Alignment explanation
Indices: 81257433--81257494 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
81257423 AGGGGTACTA
81257433 AAGTACAACAGGGGCACGT
1 AAGTACAACAGGGGCACGT
* ** *
81257452 AAGTGCGATTAGGGGTATCG-
1 AAGTAC-AACAGGGGCA-CGT
*
81257472 AAGTACAACAGGGGCATGT
1 AAGTACAACAGGGGCACGT
81257491 AAGT
1 AAGT
81257495 GTGATCAGGG
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
18 1 0.03
19 16 0.52
20 12 0.39
21 2 0.06
ACGTcount: A:0.34, C:0.15, G:0.34, T:0.18
Consensus pattern (19 bp):
AAGTACAACAGGGGCACGT
Found at i:81257467 original size:39 final size:39
Alignment explanation
Indices: 81257413--81257585 Score: 229
Period size: 39 Copynumber: 4.4 Consensus size: 39
81257403 CACAACAAAA
* ** * *
81257413 AAGTGCAATCAGGGGTACTAAAGTACAACAGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAAGGGCATGT
* * *
81257452 AAGTGCGATTAGGGGTATCGAAGTACAACAGGGGCATGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAAGGGCATGT
* *
81257491 AAGTGTGATCAGGGGTACCGAAGTACAATAAGGGCATGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAAGGGCATGT
* * *
81257530 AAGTGCGATTAGGGGTACCGAATTACAACAAAGGCATGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAAGGGCATGT
81257569 AAGTGCGATCAGGGGTA
1 AAGTGCGATCAGGGGTA
81257586 TAATTATATA
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (39 bp):
AAGTGCGATCAGGGGTACCGAAGTACAACAAGGGCATGT
Found at i:81261767 original size:14 final size:13
Alignment explanation
Indices: 81261748--81261862 Score: 59
Period size: 14 Copynumber: 8.2 Consensus size: 13
81261738 CAAGAACAAG
81261748 TCTGTAAGTATGAA
1 TCTGTAA-TATGAA
*
81261762 TCTGTATCTATGAA
1 TCTGTA-ATATGAA
*
81261776 TCTGGATATATGAA
1 TCTGTA-ATATGAA
*
81261790 TCTGTACTTATGAA
1 TCTGTA-ATATGAA
* * *
81261804 TCCGCATATATGAT
1 TCTGTA-ATATGAA
** *
81261818 TCTACATCTATGAA
1 TCTGTA-ATATGAA
*
81261832 TCTGCATATATGAA
1 TCTGTA-ATATGAA
*
81261846 TCTGTACTTATGAA
1 TCTGTA-ATATGAA
81261860 TCT
1 TCT
81261863 TCATATGTGA
Statistics
Matches: 80, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
14 80 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (13 bp):
TCTGTAATATGAA
Found at i:81261787 original size:28 final size:28
Alignment explanation
Indices: 81261756--81261868 Score: 142
Period size: 28 Copynumber: 4.0 Consensus size: 28
81261746 AGTCTGTAAG
*
81261756 TATGAATCTGTA-TCTATGAATCTGGATA
1 TATGAATCTGTACT-TATGAATCTGCATA
*
81261784 TATGAATCTGTACTTATGAATCCGCATA
1 TATGAATCTGTACTTATGAATCTGCATA
*
81261812 TATG-AT-TCTACATCTATGAATCTGCATA
1 TATGAATCTGTAC-T-TATGAATCTGCATA
*
81261840 TATGAATCTGTACTTATGAATCTTCATA
1 TATGAATCTGTACTTATGAATCTGCATA
81261868 T
1 T
81261869 GTGATTCATA
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.05
27 3 0.04
28 59 0.80
29 4 0.05
30 4 0.05
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (28 bp):
TATGAATCTGTACTTATGAATCTGCATA
Found at i:81261816 original size:42 final size:42
Alignment explanation
Indices: 81261756--81261835 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
81261746 AGTCTGTAAG
* * * **
81261756 TATGAATCTGTATCTATGAATCTGGATATATGAATCTGTACT
1 TATGAATCCGCATATATGAATCTACATATATGAATCTGTACT
* *
81261798 TATGAATCCGCATATATGATTCTACATCTATGAATCTG
1 TATGAATCCGCATATATGAATCTACATATATGAATCTG
81261836 CATATATGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (42 bp):
TATGAATCCGCATATATGAATCTACATATATGAATCTGTACT
Found at i:81261842 original size:56 final size:56
Alignment explanation
Indices: 81261767--81261875 Score: 182
Period size: 56 Copynumber: 1.9 Consensus size: 56
81261757 ATGAATCTGT
*
81261767 ATCTATGAATCTGGATATATGAATCTGTACTTATGAATCCGCATATATGATTCTAC
1 ATCTATGAATCTGCATATATGAATCTGTACTTATGAATCCGCATATATGATTCTAC
** *
81261823 ATCTATGAATCTGCATATATGAATCTGTACTTATGAATCTTCATATGTGATTC
1 ATCTATGAATCTGCATATATGAATCTGTACTTATGAATCCGCATATATGATTC
81261876 ATATGTGATT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (56 bp):
ATCTATGAATCTGCATATATGAATCTGTACTTATGAATCCGCATATATGATTCTAC
Found at i:81261996 original size:30 final size:30
Alignment explanation
Indices: 81261962--81262021 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
81261952 TATTCAATGA
* *
81261962 GTATGAATCCACAAGTTTAAGATTGCCAAG
1 GTATGAATCCACAAATCTAAGATTGCCAAG
* * *
81261992 GTATGATTCCGCAAATCTAAGTTTGCCAAG
1 GTATGAATCCACAAATCTAAGATTGCCAAG
81262022 AACAAGTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (30 bp):
GTATGAATCCACAAATCTAAGATTGCCAAG
Found at i:81265295 original size:58 final size:58
Alignment explanation
Indices: 81265105--81265277 Score: 319
Period size: 58 Copynumber: 3.0 Consensus size: 58
81265095 AATTTGGATT
* * *
81265105 ACCCGTCCGGGCTAAATCCAATTTGTTACCTAAGCTCAAGAGGGCTTACATTAGAATC
1 ACCCTTCCAGGCTAAATCCAATTTGTAACCTAAGCTCAAGAGGGCTTACATTAGAATC
81265163 ACCCTTCCAGGCTAAATCCAATTTGTAACCTAAGCTCAAGAGGGCTTACATTAGAATC
1 ACCCTTCCAGGCTAAATCCAATTTGTAACCTAAGCTCAAGAGGGCTTACATTAGAATC
81265221 ACCCTTCCAGGCTAAATCCAATTTGTAACCTAAGCTCAAGAGGGCTTACATTAGAAT
1 ACCCTTCCAGGCTAAATCCAATTTGTAACCTAAGCTCAAGAGGGCTTACATTAGAAT
81265278 TATCTGTCCG
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 112 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (58 bp):
ACCCTTCCAGGCTAAATCCAATTTGTAACCTAAGCTCAAGAGGGCTTACATTAGAATC
Found at i:81268492 original size:19 final size:19
Alignment explanation
Indices: 81268465--81268528 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
81268455 ATTACAAAAA
*
81268465 AAAAATCAAAATAATTTTT
1 AAAATTCAAAATAATTTTT
*
81268484 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
81268502 AAAATTCTAAAATTTATATTTTT
1 AAAATTC-AAAA--TA-ATTTTT
81268525 AAAA
1 AAAA
81268529 AAATTATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 12 0.32
19 15 0.41
21 1 0.03
23 9 0.24
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:81268518 original size:17 final size:17
Alignment explanation
Indices: 81268477--81268519 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
81268467 AAATCAAAAT
*
81268477 AATTTTTAAAATTCAAA
1 AATTTATAAAATTCAAA
*
81268494 ATATTTATAAAATTCTAA
1 A-ATTTATAAAATTCAAA
81268512 AATTTATA
1 AATTTATA
81268520 TTTTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTATAAAATTCAAA
Found at i:81268542 original size:12 final size:11
Alignment explanation
Indices: 81268524--81268584 Score: 70
Period size: 11 Copynumber: 5.5 Consensus size: 11
81268514 TTTATATTTT
81268524 TAAAAAAATTA
1 TAAAAAAATTA
*
81268535 TAAAAAAATTC
1 TAAAAAAATTA
* *
81268546 CACAAAAATTA
1 TAAAAAAATTA
81268557 TAAAAAAATATA
1 TAAAAAAAT-TA
*
81268569 TAAAGAAATT-
1 TAAAAAAATTA
81268579 TAAAAA
1 TAAAAA
81268585 TTAAAAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
10 5 0.12
11 26 0.63
12 10 0.24
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.25
Consensus pattern (11 bp):
TAAAAAAATTA
Found at i:81277339 original size:17 final size:17
Alignment explanation
Indices: 81277319--81277355 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
81277309 TAAAAATAAA
81277319 TTTAAAATAAATTTTAT
1 TTTAAAATAAATTTTAT
81277336 TTTAAAATAAATTTTAT
1 TTTAAAATAAATTTTAT
81277353 TTT
1 TTT
81277356 TCGGCTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAAAATAAATTTTAT
Done.