Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 255 of 318
Found at i:81281196 original size:40 final size:40
Alignment explanation
Indices: 81281007--81281232 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
81280997 TTGAATGATG
* * * *
81281007 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
81281047 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* ** * *
81281087 TTCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
81281127 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81281167 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81281208 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81281233 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 153 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81281250 original size:80 final size:79
Alignment explanation
Indices: 81281100--81281265 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
81281090 GAACTAAGAT
* ** *
81281100 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTA
*
81281165 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
*
81281180 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-
* *
81281242 CTATATCCGGTTAAATT
63 CTAAATCCGGTTAAATC
81281259 CCGAAGG
1 CCGAAGG
81281266 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTA
AATCCGGTTAAATC
Found at i:81285131 original size:93 final size:93
Alignment explanation
Indices: 81284972--81285143 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81284962 GCCCATAAGT
* * * *
81284972 GAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81285037 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
81285065 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81285130 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
81285144 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81285139 original size:46 final size:46
Alignment explanation
Indices: 81284964--81285139 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
81284954 TGTAACCCGC
* * * *
81284964 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTTGCAT
* * *
81285010 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ACTTGCAT
* * * *
81285060 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTTGCAT
81285103 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81285140 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTTGCAT
Found at i:81303818 original size:164 final size:163
Alignment explanation
Indices: 81303497--81303824 Score: 521
Period size: 164 Copynumber: 2.0 Consensus size: 163
81303487 ATTTTCCAAA
* * *
81303497 ACACCACGTTTATATAACAAATTTTGAAAGCTTCCTCAATAAACACTGTTTTAAAGTGTAATAAC
1 ACACCACGTTTATACAACAAATTTTGAAAGCTTCCACAATAAACACTATTTTAAAGTGTAATAAC
* *
81303562 AATCTAATAGGTCAACATTTTGCTAAAACGACTTGAGTCTTCACCATGAACAAGAAATCCTAAAT
66 AATCTAATAGGTCAACATTTTGCCAAAACGACTTGAGTCTTAACCATGAACAAGAAATCCTAAAT
*
81303627 TTTCATTAAGAGCGCAAAGAGGTTTTAATATAG
131 TTTCATTAAAAGCGCAAAGAGGTTTTAATATAG
* *
81303660 ACACCACTTTTATACAATAAATTTTGAAAGCTTCCACAATAAACACTATTTTAAAGTGTAATAAC
1 ACACCACGTTTATACAACAAATTTTGAAAGCTTCCACAATAAACACTATTTTAAAGTGTAATAAC
* * * * * *
81303725 AATCTAGTAGGATCAACGTTTTTCCAAAATGATTTGAGTCTTAACCATGAGCAAGAAATCCTAAA
66 AATCTAATAGG-TCAACATTTTGCCAAAACGACTTGAGTCTTAACCATGAACAAGAAATCCTAAA
81303790 TTTTCATTAAAAGCGCAAAGAGGTTTTAATATAG
130 TTTTCATTAAAAGCGCAAAGAGGTTTTAATATAG
81303824 A
1 A
81303825 ACGGGTTTCC
Statistics
Matches: 150, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
163 70 0.47
164 80 0.53
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (163 bp):
ACACCACGTTTATACAACAAATTTTGAAAGCTTCCACAATAAACACTATTTTAAAGTGTAATAAC
AATCTAATAGGTCAACATTTTGCCAAAACGACTTGAGTCTTAACCATGAACAAGAAATCCTAAAT
TTTCATTAAAAGCGCAAAGAGGTTTTAATATAG
Found at i:81308480 original size:23 final size:23
Alignment explanation
Indices: 81308435--81308480 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81308425 CCAACCAATC
* *
81308435 CAAGCATTATATCAAGACCAATT
1 CAAGCATTAGATCAAGACAAATT
81308458 CAAGCATTAGATTCAAG-CAAATT
1 CAAGCATTAGA-TCAAGACAAATT
81308481 TTAACATCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (23 bp):
CAAGCATTAGATCAAGACAAATT
Found at i:81309368 original size:58 final size:57
Alignment explanation
Indices: 81309228--81309482 Score: 253
Period size: 57 Copynumber: 4.4 Consensus size: 57
81309218 TAACACATAA
** * * *
81309228 CAGGATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAAT
1 CAGGATTACCAGTCCAGGCTAAATCTTAATTGTAACATATGCTCAGAAGGGATCAAT
* * * * *
81309285 TAGGATTACCAGTCTAGGTTGAATCTTAATTGTAACATATGCTCA-AGAGGGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCTTAATTGTAACATATGCTCAGA-AGGGATCA-AT
* * ** * * *
81309343 CAAGATTACCAGTCGAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGTGCTCAAT
1 CAGGATTACCAGTCCAGGCTAAATCTTAATTGTAACATATGCTCAGAAGGGATCAAT
* * * *
81309400 TAGGATTACTAGTCCAGGCTAAATCCTAATTGTAACATATGCTCA-AGAGGGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCTTAATTGTAACATATGCTCAGA-AGGGATCA-AT
**
81309458 CAGGATTACCAGTCCATCCTAAATC
1 CAGGATTACCAGTCCAGGCTAAATC
81309483 CCGTCAACAA
Statistics
Matches: 157, Mismatches: 36, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
56 2 0.01
57 87 0.55
58 67 0.43
59 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCTTAATTGTAACATATGCTCAGAAGGGATCAAT
Found at i:81309374 original size:115 final size:115
Alignment explanation
Indices: 81309231--81309482 Score: 414
Period size: 115 Copynumber: 2.2 Consensus size: 115
81309221 CACATAACAG
81309231 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAGGATTACCA
1 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAGGATTACCA
* * * *
81309296 GTCTAGGTTGAATCTTAATTGTAACATATGCTCAAGAGGGATTATATCAA
66 GTCCAGGCTAAATCCTAATTGTAACATATGCTCAAGAGGGATTATATCAA
* * *
81309346 GATTACCAGTCGAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGTGCTCAATTAGGATTACTA
1 GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAGGATTACCA
*
81309411 GTCCAGGCTAAATCCTAATTGTAACATATGCTCAAGAGGGATTATATCAG
66 GTCCAGGCTAAATCCTAATTGTAACATATGCTCAAGAGGGATTATATCAA
**
81309461 GATTACCAGTCCATCCTAAATC
1 GATTACCAGTCCAGGCTAAATC
81309483 CCGTCAACAA
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 126 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (115 bp):
GATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATTAGGATTACCA
GTCCAGGCTAAATCCTAATTGTAACATATGCTCAAGAGGGATTATATCAA
Found at i:81320166 original size:36 final size:35
Alignment explanation
Indices: 81320085--81320166 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 35
81320075 TCGTTGATTC
* *
81320085 ATCCAACTAGAATTGGGCGTAAAACATTGTCAGTTT
1 ATCCAACTA-AACTGGGCGCAAAACATTGTCAGTTT
***
81320121 ATTTGACTAACACTGGGCGCAAAACATTGTCCA-TTT
1 ATCCAACTAA-ACTGGGCGCAAAACATTGT-CAGTTT
81320157 ATCCAACTAA
1 ATCCAACTAA
81320167 GTTGGGCACA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
35 1 0.03
36 33 0.92
37 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (35 bp):
ATCCAACTAAACTGGGCGCAAAACATTGTCAGTTT
Found at i:81320494 original size:14 final size:14
Alignment explanation
Indices: 81320475--81320544 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 14
81320465 GTCCGTACGC
*
81320475 ATGAATCTGGATCT
1 ATGAATCTGCATCT
* *
81320489 ATGAATCCGCATAT
1 ATGAATCTGCATCT
* *
81320503 ATGAACCTGTA-CTT
1 ATGAATCTGCATC-T
*
81320517 ATGAATCTGCATAT
1 ATGAATCTGCATCT
*
81320531 ATGATTCTGCATCT
1 ATGAATCTGCATCT
81320545 TTGAGTCCAC
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
14 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (14 bp):
ATGAATCTGCATCT
Found at i:81320506 original size:28 final size:28
Alignment explanation
Indices: 81320475--81320565 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
81320465 GTCCGTACGC
*
81320475 ATGAATCTGGATCTATGAATCCGCATAT
1 ATGAATCTGCATCTATGAATCCGCATAT
* * *
81320503 ATGAACCTGTA-CTTATGAATCTGCATAT
1 ATGAATCTGCATC-TATGAATCCGCATAT
* * * *
81320531 ATGATTCTGCATCTTTGAGTCCACATAT
1 ATGAATCTGCATCTATGAATCCGCATAT
81320559 ATGAATC
1 ATGAATC
81320566 CATACTTATG
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
27 1 0.02
28 48 0.96
29 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (28 bp):
ATGAATCTGCATCTATGAATCCGCATAT
Found at i:81320578 original size:28 final size:28
Alignment explanation
Indices: 81320488--81320576 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
81320478 AATCTGGATC
*
81320488 TATGAATCCGCATATATGAA-CCTGTACT
1 TATGAATCCGCATATATGAATCC-ATACT
* *
81320516 TATGAATCTGCATATATGATTCTGCAT-CT
1 TATGAATCCGCATATATGAATC--CATACT
* *
81320545 T-TGAGTCCACATATATGAATCCATACT
1 TATGAATCCGCATATATGAATCCATACT
81320572 TATGA
1 TATGA
81320577 GTTTGTATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
26 3 0.06
27 3 0.06
28 37 0.76
29 4 0.08
30 1 0.02
31 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (28 bp):
TATGAATCCGCATATATGAATCCATACT
Found at i:81320591 original size:56 final size:56
Alignment explanation
Indices: 81320475--81320610 Score: 148
Period size: 56 Copynumber: 2.4 Consensus size: 56
81320465 GTCCGTACGC
* * * * *
81320475 ATGAATCTGGATCTATGAATCCGCATATATGAACCTGTACTTATGAATCTGCATAT
1 ATGATTCTGCATCTATGAATCCACATATATGAACCTATACTTATGAATCTGCATAA
* * * * *
81320531 ATGATTCTGCATCTTTGAGTCCACATATATGAATCC-ATACTTATGAGTTTGTATAA
1 ATGATTCTGCATCTATGAATCCACATATATGAA-CCTATACTTATGAATCTGCATAA
* *
81320587 ATGATTTTGCATCTCTGAATCCAC
1 ATGATTCTGCATCTATGAATCCAC
81320611 TTATGATTTT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
56 64 0.97
57 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (56 bp):
ATGATTCTGCATCTATGAATCCACATATATGAACCTATACTTATGAATCTGCATAA
Found at i:81320641 original size:26 final size:26
Alignment explanation
Indices: 81320587--81320641 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
81320577 GTTTGTATAA
* *
81320587 ATGATTTTGCATCTCTGAATCCACTT
1 ATGATTTTGCATCTATGAATCCACAT
* *
81320613 ATGATTTTGTATCTATGAATCCGCAT
1 ATGATTTTGCATCTATGAATCCACAT
81320639 ATG
1 ATG
81320642 TGATTCTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (26 bp):
ATGATTTTGCATCTATGAATCCACAT
Found at i:81329075 original size:28 final size:28
Alignment explanation
Indices: 81329007--81329188 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
81328997 CATGAGATTG
* * * *
81329007 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
81329036 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81329064 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81329092 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
81329120 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81329148 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81329175 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81329189 GACTTAATAT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 18 0.12
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81347570 original size:28 final size:28
Alignment explanation
Indices: 81347502--81347735 Score: 370
Period size: 28 Copynumber: 8.5 Consensus size: 28
81347492 CATGAGATTG
* * * *
81347502 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
81347531 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81347559 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81347587 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81347615 GAACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81347643 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81347671 GCACTAAGTGTGCGAGTTTGA-T-TATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81347697 GCA-T-AGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81347722 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81347736 GACTTAATAT
Statistics
Matches: 195, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
23 4 0.02
24 11 0.06
25 8 0.04
26 8 0.04
27 9 0.05
28 137 0.70
29 18 0.09
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81351246 original size:12 final size:12
Alignment explanation
Indices: 81351231--81351272 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
81351221 CGCTGGGCCT
81351231 TCGCTTGGGTCC
1 TCGCTTGGGTCC
*
81351243 TCGCTTGGTTCC
1 TCGCTTGGGTCC
* *
81351255 TCACTTGGGCCC
1 TCGCTTGGGTCC
81351267 TCGCTT
1 TCGCTT
81351273 TCATTTGGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.02, C:0.36, G:0.26, T:0.36
Consensus pattern (12 bp):
TCGCTTGGGTCC
Found at i:81361339 original size:26 final size:26
Alignment explanation
Indices: 81361290--81361339 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
81361280 CAGAGTTAGT
*
81361290 ATTGATTTGATGATTTTAGGTACTAA
1 ATTGATTTGATGATTTTAGATACTAA
*
81361316 ATTGATTTGATGATTTTATATACT
1 ATTGATTTGATGATTTTAGATACT
81361340 GATTTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (26 bp):
ATTGATTTGATGATTTTAGATACTAA
Found at i:81361480 original size:18 final size:16
Alignment explanation
Indices: 81361457--81361495 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
81361447 GAATCCTTGT
81361457 TAAAATAAAATACAATAG
1 TAAAATAAAATA-AA-AG
*
81361475 TAAAATGAAATAAAAG
1 TAAAATAAAATAAAAG
81361491 TAAAA
1 TAAAA
81361496 CCCATATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (16 bp):
TAAAATAAAATAAAAG
Found at i:81364649 original size:14 final size:14
Alignment explanation
Indices: 81364630--81364661 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
81364620 AAGCTAGTGA
81364630 ACTCTTCGGTGGAT
1 ACTCTTCGGTGGAT
*
81364644 ACTCTTTGGTGGAT
1 ACTCTTCGGTGGAT
81364658 ACTC
1 ACTC
81364662 CTCAGAAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.38
Consensus pattern (14 bp):
ACTCTTCGGTGGAT
Found at i:81367313 original size:27 final size:27
Alignment explanation
Indices: 81367275--81367327 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
81367265 AAAAGATTCA
81367275 CACGACCTAAGACACGCCCGTGTGACC
1 CACGACCTAAGACACGCCCGTGTGACC
*
81367302 CACGACCTAAGACACGCCTGTGTGAC
1 CACGACCTAAGACACGCCCGTGTGAC
81367328 ATACGGCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.38, G:0.23, T:0.13
Consensus pattern (27 bp):
CACGACCTAAGACACGCCCGTGTGACC
Found at i:81380688 original size:37 final size:38
Alignment explanation
Indices: 81380647--81380737 Score: 107
Period size: 35 Copynumber: 2.4 Consensus size: 38
81380637 AGTATTTAAT
* *
81380647 TATTTTTTTAATTTTAAAAATT-TTAAAAAGTATAAAA
1 TATTTTTTTAATATTAAAAATTATTAAAAAGTAAAAAA
* *
81380684 TA--TTTTTAAAATTAAAATTTATTAAAAAGTAAAAAA
1 TATTTTTTTAATATTAAAAATTATTAAAAAGTAAAAAA
*
81380720 AATATTTTTTAATATTAA
1 TAT-TTTTTTAATATTAA
81380738 TTAAATACTG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
35 15 0.34
36 15 0.34
37 2 0.05
39 12 0.27
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (38 bp):
TATTTTTTTAATATTAAAAATTATTAAAAAGTAAAAAA
Found at i:81380694 original size:19 final size:17
Alignment explanation
Indices: 81380660--81380710 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
81380650 TTTTTTAATT
*
81380660 TTAAAA-ATTTTAAAAA
1 TTAAAATATTTTTAAAA
81380676 GTATAAAATATTTTTAAAA
1 -T-TAAAATATTTTTAAAA
*
81380695 TTAAAAT-TTATTAAAA
1 TTAAAATATTTTTAAAA
81380711 AGTAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 8 0.27
17 7 0.23
18 6 0.20
19 9 0.30
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
TTAAAATATTTTTAAAA
Found at i:81382191 original size:4 final size:4
Alignment explanation
Indices: 81382182--81382209 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
81382172 GGATTAAACC
81382182 CTTT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT
81382210 TTTTTTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:81385347 original size:22 final size:22
Alignment explanation
Indices: 81385303--81385347 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
81385293 CTCTCTCATA
*
81385303 TTCTCAAATCTCTCCTAAATTT
1 TTCTCAAATCCCTCCTAAATTT
* *
81385325 TTCTCAATTCCCT-CTTAATTT
1 TTCTCAAATCCCTCCTAAATTT
81385346 TT
1 TT
81385348 ACTTAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (22 bp):
TTCTCAAATCCCTCCTAAATTT
Found at i:81390548 original size:16 final size:16
Alignment explanation
Indices: 81390527--81390562 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81390517 CTTAGGAGGT
*
81390527 AGATTGTTCGCATAGA
1 AGATTGTTCGCACAGA
*
81390543 AGATTGTTTGCACAGA
1 AGATTGTTCGCACAGA
81390559 AGAT
1 AGAT
81390563 CTTTAGGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (16 bp):
AGATTGTTCGCACAGA
Found at i:81392866 original size:40 final size:40
Alignment explanation
Indices: 81392822--81393085 Score: 319
Period size: 40 Copynumber: 6.7 Consensus size: 40
81392812 GCTCCTCGTT
*
81392822 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
*
81392862 CAAATGCCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAT-TCGCA
* *
81392902 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
* * *
81392942 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
*
81392982 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAT-TCGCA
* * *
81393021 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-AATTCGCA
81393062 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81393086 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 21
0.86 0.06 0.09
Matches are distributed among these distances:
38 3 0.01
39 49 0.24
40 138 0.69
41 10 0.05
42 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:81394182 original size:14 final size:14
Alignment explanation
Indices: 81394163--81394189 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81394153 AGGATGAGCA
81394163 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
81394177 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
81394190 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:81394953 original size:68 final size:68
Alignment explanation
Indices: 81394826--81395010 Score: 167
Period size: 68 Copynumber: 2.7 Consensus size: 68
81394816 TTCGTGTGAC
* * * * ** * * *
81394826 TCAAAACAGTTAGCAAGAGA-AAAGCTCCTAGTTGTCATATTAAGGTTCGTAGGTAAAGAGCTAC
1 TCAAAACAGTTAGCGAGA-ACAAAGCTCCCAATCGTCATATTAAGGTTCACAAGCAAAGAGCCAC
81394890 AACA
65 AACA
* *
81394894 TCAAAACAATTAGCGAGAACAAAGCTCCCAATCGTCATATTAAGGTTCACAAGCGAAGAGCCACA
1 TCAAAACAGTTAGCGAGAACAAAGCTCCCAATCGTCATATTAAGGTTCACAAGCAAAGAGCCACA
*
81394959 ACC
66 ACA
* * * * * *
81394962 TCTAAAATAGTTAGTGGGAGCAAAGCTCCC-AGCTATCATATTAAGGTTC
1 TC-AAAACAGTTAGCGAGAACAAAGCTCCCAATC-GTCATATTAAGGTTC
81395011 GCAATTGAAT
Statistics
Matches: 95, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
67 1 0.01
68 58 0.61
69 36 0.38
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (68 bp):
TCAAAACAGTTAGCGAGAACAAAGCTCCCAATCGTCATATTAAGGTTCACAAGCAAAGAGCCACA
ACA
Found at i:81395009 original size:69 final size:69
Alignment explanation
Indices: 81394827--81395192 Score: 241
Period size: 69 Copynumber: 5.3 Consensus size: 69
81394817 TCGTGTGACT
** * * * * ** * ** *
81394827 CAAAACAGTTAGCAAGAGAAAAGCTCCTAGTTGTCATATTAAGGTTCGTAGGTAAAGAGCTACAA
1 CAAAACAGTTAGTGAGAGCAAAGCTCCCAGCTATCATATTAAGGTTCACAAGCGAAGAGCCACAA
*
81394892 CAT-
66 CCTC
* * * * *
81394895 CAAAACAATTAGCGAGAACAAAGCTCCCA-ATCGTCATATTAAGGTTCACAAGCGAAGAGCCACA
1 CAAAACAGTTAGTGAGAGCAAAGCTCCCAGCT-ATCATATTAAGGTTCACAAGCGAAGAGCCACA
81394959 ACCTC
65 ACCTC
* * * * ** * * **
81394964 TAAAATAGTTAGTGGGAGCAAAGCTCCCAGCTATCATATTAAGGTTCGCAATTGAATAGTCGTAA
1 CAAAACAGTTAGTGAGAGCAAAGCTCCCAGCTATCATATTAAGGTTCACAAGCGAAGAGCCACAA
81395029 CCTC
66 CCTC
* * * * * * ** * **
81395033 CAAAACAGTTAATAAGAGCAAAGCTCTCTGTTTTCATATTAAGGTTTGCAGGCGAAGAGCCGTAA
1 CAAAACAGTTAGTGAGAGCAAAGCTCCCAGCTATCATATTAAGGTTCACAAGCGAAGAGCCACAA
*
81395098 TCTC
66 CCTC
* * * * * * * *
81395102 CAAAACAATTAGCGAGAGCAAAACTCCCAGCTATAATATTAAGGTTCACAGGTGAAGAACCACTA
1 CAAAACAGTTAGTGAGAGCAAAGCTCCCAGCTATCATATTAAGGTTCACAAGCGAAGAGCCACAA
81395167 CCTC
66 CCTC
* * * *
81395171 CAAGACATTTAATGAAAGCAAA
1 CAAAACAGTTAGTGAGAGCAAA
81395193 ACTCTCAGTT
Statistics
Matches: 228, Mismatches: 67, Indels: 5
0.76 0.22 0.02
Matches are distributed among these distances:
67 1 0.00
68 53 0.23
69 173 0.76
70 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (69 bp):
CAAAACAGTTAGTGAGAGCAAAGCTCCCAGCTATCATATTAAGGTTCACAAGCGAAGAGCCACAA
CCTC
Found at i:81395170 original size:138 final size:138
Alignment explanation
Indices: 81394928--81395203 Score: 304
Period size: 138 Copynumber: 2.0 Consensus size: 138
81394918 CTCCCAATCG
* * * * * *
81394928 TCATATTAAGGTTCACAAGCGAAGAGCCACAACCTCTAAAATAGTTAGTGGGAGCAAAGCTCCCA
1 TCATATTAAGGTTCACAAGCGAAGAGCCACAACCTCCAAAACAATTAGCGAGAGCAAAACTCCCA
* * * * ** * *
81394993 GCTATCATATTAAGGTTCGCAATTGAATAGTCGTAACCTCCAAAACAGTTAAT-AAGAGCAAAGC
66 GCTATAATATTAAGGTTCACAAGTGAAGAACCCTAACCTCCAAAACAGTTAATGAA-AGCAAAAC
*
81395057 TCTCTGTTT
130 TCTCAGTTT
** * ** *
81395066 TCATATTAAGGTTTGCAGGCGAAGAGCCGTAATCTCCAAAACAATTAGCGAGAGCAAAACTCCCA
1 TCATATTAAGGTTCACAAGCGAAGAGCCACAACCTCCAAAACAATTAGCGAGAGCAAAACTCCCA
* * *
81395131 GCTATAATATTAAGGTTCACAGGTGAAGAACCACT-ACCTCCAAGACATTTAATGAAAGCAAAAC
66 GCTATAATATTAAGGTTCACAAGTGAAGAACC-CTAACCTCCAAAACAGTTAATGAAAGCAAAAC
81395195 TCTCAGTTT
130 TCTCAGTTT
81395204 GTTATCCTTC
Statistics
Matches: 112, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
138 109 0.97
139 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (138 bp):
TCATATTAAGGTTCACAAGCGAAGAGCCACAACCTCCAAAACAATTAGCGAGAGCAAAACTCCCA
GCTATAATATTAAGGTTCACAAGTGAAGAACCCTAACCTCCAAAACAGTTAATGAAAGCAAAACT
CTCAGTTT
Found at i:81400454 original size:5 final size:5
Alignment explanation
Indices: 81400426--81400468 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
81400416 GTACATATGC
*
81400426 TCTTT TTTTGT TCTTT TACTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTT-T TCTTT T-CTTT TCTTT TCTTT TCTTT TCTTT T
81400469 TCACGAGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:81405713 original size:25 final size:24
Alignment explanation
Indices: 81405667--81405715 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
81405657 GAAGGAAATG
*
81405667 AAGAAAAATGGAAGGGAATGAAGA
1 AAGAAAAATGGAAGAGAATGAAGA
81405691 AAGAAAAAT-GATAGAGAAGTGAAGA
1 AAGAAAAATGGA-AGAGAA-TGAAGA
81405716 GATGAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 2 0.09
24 14 0.64
25 6 0.27
ACGTcount: A:0.59, C:0.00, G:0.31, T:0.10
Consensus pattern (24 bp):
AAGAAAAATGGAAGAGAATGAAGA
Found at i:81412336 original size:25 final size:25
Alignment explanation
Indices: 81412307--81412355 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
81412297 ATGAATTTTC
81412307 TCAAAATTTTA-TCAAGGTAAAATTG
1 TCAAAATTTTACTCAA-GTAAAATTG
*
81412332 TCAAAATTTTACTGAAGTAAAATT
1 TCAAAATTTTACTCAAGTAAAATT
81412356 AGGATGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (25 bp):
TCAAAATTTTACTCAAGTAAAATTG
Found at i:81412635 original size:37 final size:37
Alignment explanation
Indices: 81412594--81412669 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
81412584 GGATGTTGTT
81412594 TTTCTATTTAAAATAAACCTCTATAACTTTACAAGGG
1 TTTCTATTTAAAATAAACCTCTATAACTTTACAAGGG
81412631 TTTCTATTTAAAATAAACCTCTATAACTTTACAAGGG
1 TTTCTATTTAAAATAAACCTCTATAACTTTACAAGGG
81412668 TT
1 TT
81412670 CTAACTTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (37 bp):
TTTCTATTTAAAATAAACCTCTATAACTTTACAAGGG
Found at i:81416212 original size:18 final size:17
Alignment explanation
Indices: 81416155--81416212 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 17
81416145 TATAACTCAA
81416155 AAAGTTAT-AAAAATCT
1 AAAGTTATAAAAAATCT
*
81416171 AAAGAATATATAAAAAATTTT
1 AAAG--T-TATAAAAAA-TCT
81416192 AAAGTTATAAAAAATCCT
1 AAAGTTATAAAAAAT-CT
81416210 AAA
1 AAA
81416213 CCCATAAACC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
16 4 0.12
17 1 0.03
18 14 0.41
19 4 0.12
20 5 0.15
21 6 0.18
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (17 bp):
AAAGTTATAAAAAATCT
Found at i:81417131 original size:75 final size:75
Alignment explanation
Indices: 81417008--81417158 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
81416998 TTGCCCTCAC
81417008 AAAATTAATTAATAGATAGACCTAAGGGATGAGTAAACACAAAAATATTGAAAATCATCCCAATC
1 AAAATTAATTAATAGATAGACCTAAGGGATGAGTAAACACAAAAATATTGAAAATCATCCCAATC
81417073 CTATTATTTG
66 CTATTATTTG
81417083 AAAATTAATTAATAGATAGACCTAAGGGATGAGTAAACACAAAAATATTGAAAATCATCCCAATC
1 AAAATTAATTAATAGATAGACCTAAGGGATGAGTAAACACAAAAATATTGAAAATCATCCCAATC
81417148 CTATTATTTG
66 CTATTATTTG
81417158 A
1 A
81417159 CTTTACTTTT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (75 bp):
AAAATTAATTAATAGATAGACCTAAGGGATGAGTAAACACAAAAATATTGAAAATCATCCCAATC
CTATTATTTG
Found at i:81417215 original size:60 final size:60
Alignment explanation
Indices: 81417124--81417248 Score: 232
Period size: 60 Copynumber: 2.1 Consensus size: 60
81417114 AGTAAACACA
81417124 AAAATATTGAAAATCATCCCAATCCTATTATTTGACTTTACTTTTTAGCCTTATAAATAC
1 AAAATATTGAAAATCATCCCAATCCTATTATTTGACTTTACTTTTTAGCCTTATAAATAC
* *
81417184 AAAATATTGAAAATCATCCCAATCCTATTATTTTACTTTACTTTTTAGCCTTTTAAATAC
1 AAAATATTGAAAATCATCCCAATCCTATTATTTGACTTTACTTTTTAGCCTTATAAATAC
81417244 AAAAT
1 AAAAT
81417249 GCCTTTAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.41
Consensus pattern (60 bp):
AAAATATTGAAAATCATCCCAATCCTATTATTTGACTTTACTTTTTAGCCTTATAAATAC
Found at i:81417426 original size:9 final size:9
Alignment explanation
Indices: 81417414--81417505 Score: 78
Period size: 9 Copynumber: 9.7 Consensus size: 9
81417404 TTTTTTACCA
81417414 AAAATTATT
1 AAAATTATT
81417423 AAAATATTATT
1 -AAA-ATTATT
*
81417434 AAAAATATT
1 AAAATTATT
81417443 AAAATTGATAT
1 AAAATT-AT-T
*
81417454 AAACTTATT
1 AAAATTATT
*
81417463 AAAATTATAA
1 AAAATTAT-T
81417473 AAAATTA-T
1 AAAATTATT
*
81417481 AAATTTTATT
1 AAA-ATTATT
*
81417491 AAAAATATT
1 AAAATTATT
81417500 AAAATT
1 AAAATT
81417506 TTATAAATAA
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
8 3 0.05
9 30 0.45
10 21 0.32
11 12 0.18
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (9 bp):
AAAATTATT
Found at i:81417489 original size:19 final size:19
Alignment explanation
Indices: 81417413--81417512 Score: 98
Period size: 20 Copynumber: 5.2 Consensus size: 19
81417403 ATTTTTTACC
*
81417413 AAAAATTATTAAAATATTATT
1 AAAAA-TATTAAAATTTTA-T
*
81417434 AAAAATATTAAAATTGATAT
1 AAAAATATTAAAATT-TTAT
**
81417454 AAACTTATTAAAA--TTAT
1 AAAAATATTAAAATTTTAT
81417471 AAAAA-ATTATAAATTTTATT
1 AAAAATATTA-AAATTTTA-T
81417491 AAAAATATTAAAATTTTAT
1 AAAAATATTAAAATTTTAT
81417510 AAA
1 AAA
81417513 TAAAACTTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
16 4 0.06
17 9 0.14
19 7 0.11
20 35 0.53
21 11 0.17
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (19 bp):
AAAAATATTAAAATTTTAT
Found at i:81417496 original size:29 final size:28
Alignment explanation
Indices: 81417458--81417514 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
81417448 TGATATAAAC
* *
81417458 TTATTAAAATTATAAAAAATTATAAATT
1 TTATTAAAAATATAAAAAATTATAAATA
**
81417486 TTATTAAAAATATTAAAATTTTATAAATA
1 TTATTAAAAATA-TAAAAAATTATAAATA
81417515 AAACTTACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
TTATTAAAAATATAAAAAATTATAAATA
Found at i:81417668 original size:20 final size:21
Alignment explanation
Indices: 81417643--81417693 Score: 88
Period size: 20 Copynumber: 2.5 Consensus size: 21
81417633 CAAGACTCTC
81417643 TTATTTTTATTA-ATAAATTA
1 TTATTTTTATTAGATAAATTA
81417663 TTATTTTTA-TAGATAAATTA
1 TTATTTTTATTAGATAAATTA
81417683 TTATTTTTATT
1 TTATTTTTATT
81417694 TTTAAAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.90
21 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTTTTATTAGATAAATTA
Found at i:81417999 original size:10 final size:10
Alignment explanation
Indices: 81417962--81418199 Score: 77
Period size: 10 Copynumber: 23.8 Consensus size: 10
81417952 ATGAGGACAA
*
81417962 ATAAATTTTT
1 ATAATTTTTT
*
81417972 AT-ATATTTT
1 ATAATTTTTT
*
81417981 -TAATATTTT
1 ATAATTTTTT
81417990 ATAATTTTTT
1 ATAATTTTTT
*
81418000 AAATTATTTTTT
1 --ATAATTTTTT
* *
81418012 ATACTTTATT
1 ATAATTTTTT
* *
81418022 AGAATCTTTT
1 ATAATTTTTT
*
81418032 ATAAGTTTTT
1 ATAATTTTTT
*
81418042 ATGAATTTTGT
1 AT-AATTTTTT
*
81418053 ATAA-GTTTT
1 ATAATTTTTT
** *
81418062 ATAATTACTG
1 ATAATTTTTT
*
81418072 ATGA-TTTTT
1 ATAATTTTTT
*
81418081 ACAAATTTTTT
1 A-TAATTTTTT
81418092 -TAGATTTTTT
1 ATA-ATTTTTT
81418102 CATAAGTTTTTT
1 -ATAA-TTTTTT
81418114 -TGAATTTTTT
1 AT-AATTTTTT
* **
81418124 ATAAGTTTAC
1 ATAATTTTTT
* *
81418134 AGAAATTTTT
1 ATAATTTTTT
81418144 A-AATATTTTT
1 ATAAT-TTTTT
81418154 A-AGA-TTTTT
1 ATA-ATTTTTT
81418163 A-AATATTTTT
1 ATAAT-TTTTT
*
81418173 A-AATATTTT
1 ATAATTTTTT
*
81418182 -TAAGTTTTT
1 ATAATTTTTT
81418191 ATGAATTTT
1 AT-AATTTT
81418200 AGTAAAATTT
Statistics
Matches: 166, Mismatches: 41, Indels: 41
0.67 0.17 0.17
Matches are distributed among these distances:
8 2 0.01
9 42 0.25
10 82 0.49
11 23 0.14
12 17 0.10
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:81418009 original size:29 final size:28
Alignment explanation
Indices: 81417962--81418020 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 28
81417952 ATGAGGACAA
* *
81417962 ATAAATTTTTATATATTTTTAATATTTT
1 ATAAATTTTTAAATATTTTTAATACTTT
* *
81417990 ATAATTTTTTAAATTATTTTTTATACTTT
1 ATAAATTTTTAAA-TATTTTTAATACTTT
81418019 AT
1 AT
81418021 TAGAATCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (28 bp):
ATAAATTTTTAAATATTTTTAATACTTT
Found at i:81418111 original size:21 final size:21
Alignment explanation
Indices: 81418074--81418131 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
81418064 AATTACTGAT
* *
81418074 GATTTTTACA-AATTTTTTTA
1 GATTTTTTCATAAGTTTTTTA
*
81418094 GATTTTTTCATAAGTTTTTTT
1 GATTTTTTCATAAGTTTTTTA
81418115 GAATTTTTT-ATAAGTTT
1 G-ATTTTTTCATAAGTTT
81418132 ACAGAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.27
21 17 0.52
22 7 0.21
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (21 bp):
GATTTTTTCATAAGTTTTTTA
Found at i:81418160 original size:9 final size:9
Alignment explanation
Indices: 81418138--81418221 Score: 64
Period size: 10 Copynumber: 8.8 Consensus size: 9
81418128 GTTTACAGAA
81418138 ATTTTTAAAT
1 ATTTTT-AAT
*
81418148 ATTTTTAAG
1 ATTTTTAAT
81418157 ATTTTTAAAT
1 ATTTTT-AAT
81418167 ATTTTTAAAT
1 ATTTTT-AAT
81418177 ATTTTTAAGT
1 ATTTTTAA-T
81418187 -TTTTATGAAT
1 ATTTT-T-AAT
* *
81418197 -TTTAGTAAA
1 ATTT-TTAAT
81418206 ATTTTTAAT
1 ATTTTTAAT
81418215 ATTTTTA
1 ATTTTTA
81418222 TAAGTTTATT
Statistics
Matches: 62, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
9 26 0.42
10 34 0.55
11 2 0.03
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:81418160 original size:19 final size:20
Alignment explanation
Indices: 81418138--81418184 Score: 78
Period size: 19 Copynumber: 2.4 Consensus size: 20
81418128 GTTTACAGAA
81418138 ATTTTTAAATATTTTT-AAG
1 ATTTTTAAATATTTTTAAAG
*
81418157 ATTTTTAAATATTTTTAAAT
1 ATTTTTAAATATTTTTAAAG
81418177 ATTTTTAA
1 ATTTTTAA
81418185 GTTTTTATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTTAAATATTTTTAAAG
Found at i:81418170 original size:29 final size:29
Alignment explanation
Indices: 81418139--81418239 Score: 118
Period size: 29 Copynumber: 3.4 Consensus size: 29
81418129 TTTACAGAAA
81418139 TTTTTAAATATTTTTAAGATTTTTA-AAT
1 TTTTTAAATATTTTTAAGATTTTTATAAT
81418167 ATTTTTAAATATTTTTAAG-TTTTTATGAAT
1 -TTTTTAAATATTTTTAAGATTTTTAT-AAT
* *
81418197 TTTAGTAAA-ATTTTTAATATTTTTATAAGT
1 TTT-TTAAATATTTTTAAGATTTTTATAA-T
81418227 TTATTTAAATATT
1 TT-TTTAAATATT
81418240 AATATTGCAA
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
28 6 0.10
29 31 0.50
30 21 0.34
31 4 0.06
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (29 bp):
TTTTTAAATATTTTTAAGATTTTTATAAT
Found at i:81420849 original size:18 final size:18
Alignment explanation
Indices: 81420808--81420843 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81420798 AAATTAAAAT
* *
81420808 ATTAATTAAGCTAATTAA
1 ATTAATTAACCTAACTAA
81420826 ATTAATTAACCTAACTAA
1 ATTAATTAACCTAACTAA
81420844 TCTAATGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (18 bp):
ATTAATTAACCTAACTAA
Found at i:81422326 original size:30 final size:30
Alignment explanation
Indices: 81422285--81422347 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
81422275 ACGGGAATAA
* * *
81422285 GTTGCTCACACAAGTTGACATTATATCAGG
1 GTTGCTCACACAAGCTAACATTATATCAAG
*
81422315 GTTGCTTACACAAGCTAACATTATATCAAG
1 GTTGCTCACACAAGCTAACATTATATCAAG
81422345 GTT
1 GTT
81422348 ACCTGTCTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (30 bp):
GTTGCTCACACAAGCTAACATTATATCAAG
Found at i:81426204 original size:31 final size:31
Alignment explanation
Indices: 81426166--81426224 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
81426156 ACACCTGAAG
81426166 TAAAAAAAATTCAACTAGATTTGACTTATGA
1 TAAAAAAAATTCAACTAGATTTGACTTATGA
81426197 TAAAAAAAATTCAACTAGATTTGACTTA
1 TAAAAAAAATTCAACTAGATTTGACTTA
81426225 CGAAGAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.32
Consensus pattern (31 bp):
TAAAAAAAATTCAACTAGATTTGACTTATGA
Found at i:81426234 original size:32 final size:32
Alignment explanation
Indices: 81426162--81426234 Score: 112
Period size: 31 Copynumber: 2.3 Consensus size: 32
81426152 GATCACACCT
*
81426162 GAAGTAAAAAAAATTCAACTAGATTTGACTTAT
1 GAAG-AAAAAAAATTCAACTAGATTTGACTTAC
*
81426195 G-ATAAAAAAAATTCAACTAGATTTGACTTAC
1 GAAGAAAAAAAATTCAACTAGATTTGACTTAC
81426226 GAAGAAAAA
1 GAAGAAAAA
81426235 GTAAAGTTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 28 0.78
32 7 0.19
33 1 0.03
ACGTcount: A:0.52, C:0.10, G:0.12, T:0.26
Consensus pattern (32 bp):
GAAGAAAAAAAATTCAACTAGATTTGACTTAC
Found at i:81434647 original size:43 final size:43
Alignment explanation
Indices: 81434586--81434669 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
81434576 TGTGATTTCA
*
81434586 ATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCATCG
1 ATATGTGGTTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
81434629 ATATGTGGTTAC-ATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGGTTACGA-GTAAGACCACGTCTGGGACGTTGGCAT
81434670 TGTACGATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 2 0.05
43 34 0.92
44 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (43 bp):
ATATGTGGTTACGAGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:81440556 original size:28 final size:29
Alignment explanation
Indices: 81440502--81440556 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
81440492 ACAAGGGCTT
*
81440502 TCACAAGGCCAAGCACATGCCCGTGTCCA
1 TCACAAGGCCAAGCACACGCCCGTGTCCA
* *
81440531 TCACACGGCCTAG-ACACGCCCGTGTC
1 TCACAAGGCCAAGCACACGCCCGTGTC
81440557 GTCGCTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.24, C:0.40, G:0.22, T:0.15
Consensus pattern (29 bp):
TCACAAGGCCAAGCACACGCCCGTGTCCA
Found at i:81444840 original size:41 final size:41
Alignment explanation
Indices: 81444767--81444947 Score: 209
Period size: 41 Copynumber: 4.4 Consensus size: 41
81444757 ATGAAATGCG
81444767 CATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACA
1 CATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACA
* * * * * *
81444808 CATACATGCCCCTATTTATACTCCAGTGCCCCTTAAATACA
1 CATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACA
* * *
81444849 CATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTTCA
1 CATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACA
* * * * * *
81444890 CATACATTCCACTATTTGTACTTTAATACCCCTGAATTGCA
1 CATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACA
**
81444931 CATATGTGCCCCTGTTT
1 CATACATGCCCCTGTTT
81444948 AGACTTCGGT
Statistics
Matches: 113, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.34
Consensus pattern (41 bp):
CATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACA
Found at i:81444954 original size:82 final size:82
Alignment explanation
Indices: 81444758--81444947 Score: 236
Period size: 82 Copynumber: 2.3 Consensus size: 82
81444748 AGAATAATGA
* * * * *
81444758 TGAAATGCGCATACATGCCCCTGTTTGTACTTCAGTACCCCTGAATTACACATACATGCCCCTAT
1 TGAAATACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTACACATACATGCCACTAT
* *
81444823 TTATACTCCAGTGCCCC
66 TTATACTCCAATACCCC
* * *
81444840 TTAAATACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTTCACATACATTCCACTAT
1 TGAAATACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTACACATACATGCCACTAT
* **
81444905 TTGTACTTTAATACCCC
66 TTATACTCCAATACCCC
* * *
81444922 TGAATTGCACATATGTGCCCCTGTTT
1 TGAAATACACATACGTGCCCCTGTTT
81444948 AGACTTCGGT
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 91 1.00
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (82 bp):
TGAAATACACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTACACATACATGCCACTAT
TTATACTCCAATACCCC
Found at i:81445713 original size:15 final size:15
Alignment explanation
Indices: 81445693--81445741 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
81445683 AGACACAGGC
81445693 GTGTGACTCAGCCAT
1 GTGTGACTCAGCCAT
81445708 GTGTGACACTCAGCCA-
1 GTGTG--ACTCAGCCAT
*
81445724 G-GTGACACAGCCAT
1 GTGTGACTCAGCCAT
81445738 GTGT
1 GTGT
81445742 CCCCTGTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 8 0.28
14 1 0.03
15 10 0.34
16 1 0.03
17 9 0.31
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (15 bp):
GTGTGACTCAGCCAT
Found at i:81445720 original size:17 final size:17
Alignment explanation
Indices: 81445698--81445741 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
81445688 CAGGCGTGTG
81445698 ACTCAGCCATGTGTGAC
1 ACTCAGCCATGTGTGAC
81445715 ACTCAGCCA-G-GTGAC
1 ACTCAGCCATGTGTGAC
81445730 A--CAGCCATGTGT
1 ACTCAGCCATGTGT
81445742 CCCCTGTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 6 0.24
14 1 0.04
15 8 0.32
16 1 0.04
17 9 0.36
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (17 bp):
ACTCAGCCATGTGTGAC
Found at i:81455567 original size:46 final size:47
Alignment explanation
Indices: 81455499--81455597 Score: 128
Period size: 46 Copynumber: 2.1 Consensus size: 47
81455489 TATAATCTAC
* *
81455499 GTAGGGGAAAAGCTAAAATGTAATGTCGATGTAACTATTTCAAATAT
1 GTAGGGGAAAAGCTAAAATGTAATATCGATGCAACTATTTCAAATAT
* * **
81455546 GTAGGGG-CAAGCTGAAATGTAATATCGATGCAGTTATTTCAAATAT
1 GTAGGGGAAAAGCTAAAATGTAATATCGATGCAACTATTTCAAATAT
*
81455592 GAAGGG
1 GTAGGG
81455598 TTGACGAGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 38 0.84
47 7 0.16
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.28
Consensus pattern (47 bp):
GTAGGGGAAAAGCTAAAATGTAATATCGATGCAACTATTTCAAATAT
Found at i:81460444 original size:47 final size:49
Alignment explanation
Indices: 81460321--81460447 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 49
81460311 AGATATGTGA
*
81460321 GAGCTAGTGTAAGACCATGTCTGGGACATGGAGTCGACCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGAGTCGACCTCGA-TTCGAT
** * * * * *
81460371 -ATTCAGTGTAAGACCAGGTCTAGGACATGGTA-TTGA-CTTGA-TGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGG-AGTCGACCTCGATTCGAT
81460417 GAGCCAGTGTAAGACCATGTCTGGGACATGG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGG
81460448 CATCGGCATT
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
46 4 0.06
47 26 0.41
48 4 0.06
49 28 0.44
50 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGAGTCGACCTCGATTCGAT
Found at i:81464001 original size:717 final size:711
Alignment explanation
Indices: 81462623--81464017 Score: 2384
Period size: 717 Copynumber: 2.0 Consensus size: 711
81462613 TGTTACAAGC
* *
81462623 ATAATGGAATTGTACAAAGAATGAACAGAACCTTGCTAGAAAAAGGTCAATGCACGTTCTCTAAT
1 ATAATGGAATTGTACAAAGAATGAACAGAACCTTGCTAGAAAAAGCTCAATGCACGTTCTCTAAC
81462688 GCAGGCTTAGGGAAGGAATTTTGGGCTGAAGCCATAAACCTGGCAAGTTATTTGGTAAATTGATC
66 GCAGGCTTAGGGAAGGAATTTTGGGCTGAAGCCATAAACCTGGCAAGTTATTTGGTAAATTGATC
81462753 TCCTCATCAAGCATTGAATGGTAAAGTTCTAGAGAAGATATGGTCAGGTAAACCTCCCAAATATT
131 TCCTCATCAAGCATTGAATGGTAAAGTTCTAGAGAAGATATGGTCAGGTAAACCTCCCAAATATT
*
81462818 CTAATCTAAAAAAATTTGGTTGTCTTGCTTATGCTAAAGTTAGCCAGAGAAAGTTTGAACCAAGG
196 CTAATCTAAAAAAATTTGGTTGTCTTACTTATGCTAAAGTTAGCCAGAGAAAGTTTGAACCAAGG
* * *
81462883 GCAATTAAATTATCTTTCTACACAAAAGGTTTTAAGTTGTGTGAAATCCGACAAAATAATTGTTA
261 GAAATTAAATCATCTTTCAACACAAAAGGTTTTAAGTTGTGTGAAATCCGACAAAATAATTGTTA
*
81462948 GCAGAGATGTTACGTTTGATGAATCTATCATGTTTCGATCAAAAAAGAAGACTTTTACTTTTAAA
326 GCAGAGATGTTACGTTTGATGAATCTATCATGTTTCGATCAAAAAAGAAGACGTTTACTTTTAAA
81463013 GACACAACAAATCAGAATGTCTCAAGCAAGGTGGAGTCAAAAGATAAAATTGGGGGCGATGTCAA
391 GACACAACAAATCAGAATGTCTCAAGCAAGGTGGAGTCAAAAGATAAAATTGGGGGCGATGTCAA
*
81463078 GTGATGATGATTCACTTAACTAACTAAAATCACGACAAAGGCAAGCGCATCTATCTAACAATAGT
456 GTGATGATGATTCACTTAACTAACTAAAATCACGACAAAGGCAAGCGCACCTATCTAACAATAGT
* * *
81463143 ATAGCTATGGTGAGTCAGGAATATCGTATCCACGAGGACTAAAAGTACTAGTACTTACTATTTTT
521 ATAGCTATGGTGAGGCAGGAATATCGTATCCACGAGGACTAAAAGCACTAGTACTTACTATCTTT
* *
81463208 CTATTATCTAGCCAGTAATTTGAAGAAGTTTGTTTTAAATCTAAAATTATCTAATTACTAAGGAT
586 CTATTATCTAGCCAGTAATTTGAAGAAGTTTGTTTTAAATCTAAAACTATCTAATTACTAAGGAA
* *
81463273 GCAATAGAGAATAAGTAAGAAAATAATCTAAAATTATCGAACCATTGTTGGAACTCGCAGA
651 ACAAAAGAGAATAAGTAAGAAAATAATCTAAAATTATCGAACCATTGTTGGAACTCGCAGA
* * *
81463334 ATAATGGAATTGTACAAAGAATGAACAGAACCTTGCTAGAAAAAGCTCGATGCATGTTTTCTAAC
1 ATAATGGAATTGTACAAAGAATGAACAGAACCTTGCTAGAAAAAGCTCAATGCACGTTCTCTAAC
81463399 GCAGGCTTAGGGAAGGAATTTTGGGCTGAAGCCATAAACCTGGCAAGTTATTTGGTAAATTGATC
66 GCAGGCTTAGGGAAGGAATTTTGGGCTGAAGCCATAAACCTGGCAAGTTATTTGGTAAATTGATC
* * *
81463464 TCCTCATCGAA-CATTGAATGGTAAAGTTCTAGAGGAGATATGGTCAGGTAATCCTCCCAATTAT
131 TCCTCATC-AAGCATTGAATGGTAAAGTTCTAGAGAAGATATGGTCAGGTAAACCTCCCAAATAT
* *
81463528 TTTAATCT-CAAAAATTATGGTTGTCTTACTTATGCTAAAGTTAGCCAGAGAAAGTTTGAACCAA
195 TCTAATCTAAAAAAATT-TGGTTGTCTTACTTATGCTAAAGTTAGCCAGAGAAAGTTTGAACCAA
81463592 GGGAAATTAAATGCATCTTTCAACACAAAAGGTTTTAAGTTGTGGTGTCTGAAATCCGACAAAAT
259 GGGAAATTAAAT-CATCTTTCAACACAAAAGGTTTTAAG-T-T-GTG--TGAAATCCGACAAAAT
*
81463657 AATTGTTAGCAGAGATGTTACGTTTGGTGAATCTATCATGTTTCGATCAAAAAATG-AGACGTTT
318 AATTGTTAGCAGAGATGTTACGTTTGATGAATCTATCATGTTTCGATCAAAAAA-GAAGACGTTT
* *
81463721 ACTTTTAAAGACACAACAAATCAGAGTGTCTCAAGCAAGGTGGAGTCAAAAGATGAAATTGGGGG
382 ACTTTTAAAGACACAACAAATCAGAATGTCTCAAGCAAGGTGGAGTCAAAAGATAAAATTGGGGG
* * *
81463786 TGATGTCACGTGATGATGATTCACTTATCTAACTAAAATCACGACAAAGGCAAGCGCACCTAT-T
447 CGATGTCAAGTGATGATGATTCACTTAACTAACTAAAATCACGACAAAGGCAAGCGCACCTATCT
*
81463850 GAACAATAGTATAGCTGTGGTGAGGCAGGAATATCGTATCCACGAGGACTAAAAGCACTAGTACT
512 -AACAATAGTATAGCTATGGTGAGGCAGGAATATCGTATCCACGAGGACTAAAAGCACTAGTACT
* *
81463915 TACTATCTTTCTATTATCTAGTCGGTAATTTGAAGAAGTTTGTTTTAAATCTAAAACTATCTAAT
576 TACTATCTTTCTATTATCTAGCCAGTAATTTGAAGAAGTTTGTTTTAAATCTAAAACTATCTAAT
81463980 TACTAAGGAAACAAAAGAGAATAAGTAAGAAAATAATC
641 TACTAAGGAAACAAAAGAGAATAAGTAAGAAAATAATC
81464018 GAATAAACCA
Statistics
Matches: 642, Mismatches: 32, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
710 7 0.01
711 247 0.38
712 26 0.04
713 1 0.00
714 1 0.00
715 3 0.00
716 1 0.00
717 355 0.55
718 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (711 bp):
ATAATGGAATTGTACAAAGAATGAACAGAACCTTGCTAGAAAAAGCTCAATGCACGTTCTCTAAC
GCAGGCTTAGGGAAGGAATTTTGGGCTGAAGCCATAAACCTGGCAAGTTATTTGGTAAATTGATC
TCCTCATCAAGCATTGAATGGTAAAGTTCTAGAGAAGATATGGTCAGGTAAACCTCCCAAATATT
CTAATCTAAAAAAATTTGGTTGTCTTACTTATGCTAAAGTTAGCCAGAGAAAGTTTGAACCAAGG
GAAATTAAATCATCTTTCAACACAAAAGGTTTTAAGTTGTGTGAAATCCGACAAAATAATTGTTA
GCAGAGATGTTACGTTTGATGAATCTATCATGTTTCGATCAAAAAAGAAGACGTTTACTTTTAAA
GACACAACAAATCAGAATGTCTCAAGCAAGGTGGAGTCAAAAGATAAAATTGGGGGCGATGTCAA
GTGATGATGATTCACTTAACTAACTAAAATCACGACAAAGGCAAGCGCACCTATCTAACAATAGT
ATAGCTATGGTGAGGCAGGAATATCGTATCCACGAGGACTAAAAGCACTAGTACTTACTATCTTT
CTATTATCTAGCCAGTAATTTGAAGAAGTTTGTTTTAAATCTAAAACTATCTAATTACTAAGGAA
ACAAAAGAGAATAAGTAAGAAAATAATCTAAAATTATCGAACCATTGTTGGAACTCGCAGA
Found at i:81466026 original size:20 final size:20
Alignment explanation
Indices: 81466001--81466040 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81465991 TTGAAAGATA
81466001 GACATTTTGGGAAATTGATT
1 GACATTTTGGGAAATTGATT
81466021 GACATTTTGGGAAATTGATT
1 GACATTTTGGGAAATTGATT
81466041 TTATCACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (20 bp):
GACATTTTGGGAAATTGATT
Found at i:81467690 original size:8 final size:9
Alignment explanation
Indices: 81467670--81467700 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
81467660 TTGGTGTTAA
81467670 TTTTT-ATG
1 TTTTTGATG
81467678 TTTTTGATG
1 TTTTTGATG
81467687 TTTTTGATG
1 TTTTTGATG
81467696 TTTTT
1 TTTTT
81467701 AAGATCATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.10, C:0.00, G:0.16, T:0.74
Consensus pattern (9 bp):
TTTTTGATG
Found at i:81468496 original size:42 final size:42
Alignment explanation
Indices: 81468449--81468601 Score: 162
Period size: 42 Copynumber: 3.6 Consensus size: 42
81468439 TGAGTTATCA
* *
81468449 TGTAAGACCATATCTGGGATATGGCGTTGATATGAGATTTCG
1 TGTAAGACCATATCTGGGACATGGCGTCGATATGAGATTTCG
** * * *
81468491 TGTAAGACCACGTCTGGGACATGGCGTCGAAACGAGAATTCG
1 TGTAAGACCATATCTGGGACATGGCGTCGATATGAGATTTCG
* * * * * ** *
81468533 TATAAGACCATATCTAGGATATGGCATCGATGTGAGATCACA
1 TGTAAGACCATATCTGGGACATGGCGTCGATATGAGATTTCG
*
81468575 TGTAAGACCATGTCTGGGACATGGCGT
1 TGTAAGACCATATCTGGGACATGGCGT
81468602 TGGCATCTTA
Statistics
Matches: 86, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCGTCGATATGAGATTTCG
Found at i:81476790 original size:13 final size:13
Alignment explanation
Indices: 81476772--81476797 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81476762 ATTATGACTT
81476772 AATTAATTAAAAA
1 AATTAATTAAAAA
81476785 AATTAATTAAAAA
1 AATTAATTAAAAA
81476798 TGAAAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATTAATTAAAAA
Found at i:81479909 original size:130 final size:130
Alignment explanation
Indices: 81479673--81479909 Score: 343
Period size: 130 Copynumber: 1.8 Consensus size: 130
81479663 GACGAGATTT
81479673 GATATTTGGCAATTCGCGGAATCGTGCCCCAACGTGTTGGGTTGCAATTTCGTGTTTGCTCAAAA
1 GATATTTGGCAATTCGCGGAATCGTGCCCCAACGTGTTGGGTTGCAATTTCGTGTTTGCTCAAAA
* * * * *
81479738 TAGTCGAATATCACTTCAAAATTTCACTTATGTCTTTTAAAACCCCTTAAACGAAGGCAATGTGC
66 TAATCAAATATCACTTCAAAATTTCACTCAGGTCTTCTAAAACCCCTTAAACGAAGGCAATGTGC
* * * * *
81479803 GATATTTTGCAATTCGTGGAATCGTGCCCTAATGTGTTGGGTTGCAATTTC-TCGTTTGCTTAAA
1 GATATTTGGCAATTCGCGGAATCGTGCCCCAACGTGTTGGGTTGCAATTTCGT-GTTTGCTCAAA
*
81479867 ATAATCAAATATCCCTTCAAAATTTCACTCAGGT-TTCCTAAAA
65 ATAATCAAATATCACTTCAAAATTTCACTCAGGTCTT-CTAAAA
81479910 ATCTTTCAAA
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
129 3 0.03
130 91 0.97
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (130 bp):
GATATTTGGCAATTCGCGGAATCGTGCCCCAACGTGTTGGGTTGCAATTTCGTGTTTGCTCAAAA
TAATCAAATATCACTTCAAAATTTCACTCAGGTCTTCTAAAACCCCTTAAACGAAGGCAATGTGC
Found at i:81491761 original size:44 final size:44
Alignment explanation
Indices: 81491627--81492652 Score: 964
Period size: 44 Copynumber: 22.8 Consensus size: 44
81491617 GAATCCTGCG
* * * * *
81491627 GATTTGGCATCTCTGTGTTGACAGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* ** *
81491671 GATTTGGCATCTCTGTATTGTTAGAG-GCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
81491714 GATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
81491758 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
81491802 GATTTGGCGTCTCTGTATTGGCAGAGAGCATATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * * * *
81491846 GATTTGGCATCTCTGTGTTGACAGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
81491890 GATTTGGCGTCTCTGTATTGGCGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
**
81491934 GATTTGGCGTCTCTGTATTGGTGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
81491978 GATTTGGCGTCTCTGTATTGGCAGAGAGCATATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
81492022 GATTTGGCGTCTCTGTATTGGCGGTGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
81492066 GATTTAGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGAT-AGCA
* * * * * * * *
81492111 -A--GGAGCAG-ATC-GAAGATAGCAAATTTG-GC-GTCTCTGTATTAGTGGAGAGCA
1 GATTTG-GC-GTCTCTGTA-TTGGCAGA---GAGCAG-ATC-G-A--A---GATAGCA
* ** ** * * **
81492162 GA-TCGAAGATAGCAG-ATTTGGCATCTCTGTATTG-GCGGAAAGCAA-ATCGAAGATAGCA
1 GATTTGGCG-TCTCTGTA-TTGGCA-----G-A--GAGCAGATCG-AAGAT---AG----CA
81492220 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
81492264 GATTTGGCGTCTCTGTATTGGCAGAGAACAGATCGTAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
81492308 GATTTGGCGTCTCTGTATTGGC-GAAGAGCAGATCAAAGATATCA
1 GATTTGGCGTCTCTGTATTGGCAG-AGAGCAGATCGAAGATAGCA
* * *
81492352 GATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
81492396 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* ** *
81492440 AATTTGGCGTCTCTGTATTGGTGGAGAGTAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
** * *
81492484 GATTTGGTATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
81492528 GATTTGGCATCTCTGTATTGTCAGAGGGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
81492572 GATTTGGCATCTCTGTGTTGACAGAGAGCAGATCGAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG-CA
* * *
81492616 GATTTGGCATCTCTATATTGGCAGAGAACAGATCGAA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA
81492653 AATAATAGAT
Statistics
Matches: 828, Mismatches: 112, Indels: 84
0.81 0.11 0.08
Matches are distributed among these distances:
42 2 0.00
43 45 0.05
44 707 0.85
45 9 0.01
46 2 0.00
47 1 0.00
48 2 0.00
49 1 0.00
50 3 0.00
51 13 0.02
52 4 0.00
53 9 0.01
54 3 0.00
55 1 0.00
57 2 0.00
58 18 0.02
59 6 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
Found at i:81492119 original size:22 final size:21
Alignment explanation
Indices: 81492091--81492132 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
81492081 TATTGACAGA
81492091 GAGCAGATCGAAGATAAGCAAG
1 GAGCAGATCGAAGAT-AGCAAG
81492113 GAGCAGATCGAAGATAGCAA
1 GAGCAGATCGAAGATAGCAA
81492133 ATTTGGCGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.45, C:0.14, G:0.31, T:0.10
Consensus pattern (21 bp):
GAGCAGATCGAAGATAGCAAG
Found at i:81492127 original size:66 final size:66
Alignment explanation
Indices: 81492047--81492172 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
81492037 TATTGGCGGT
*
81492047 GAGCAGATCAAAGATAGCAGATTTAGCATCTCTGTATT-GACAGAGAGCAGATCGAAGATAAGCA
1 GAGCAGATCAAAGATAGCAAATTTAGCATCTCTGTATTAG-CAGAGAGCAGATCGAAGATAAGCA
81492111 AG
65 AG
* * * **
81492113 GAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTATTAGTGGAGAGCAGATCGAAGATA
1 GAGCAGATCAAAGATAGCAAATTTAGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATA
81492173 GCAGATTTGG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 52 0.98
67 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.21
Consensus pattern (66 bp):
GAGCAGATCAAAGATAGCAAATTTAGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATAAGCAA
G
Found at i:81492211 original size:110 final size:110
Alignment explanation
Indices: 81492003--81492216 Score: 320
Period size: 110 Copynumber: 1.9 Consensus size: 110
81491993 TATTGGCAGA
* * * *
81492003 GAGCATATCAAAGATAGCAGATTTGGCGTCTCTGTATTGGCGGTGAGCAGATCAAAGATAGCAGA
1 GAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTAGCGGAGAGCAGATCAAAGATAGCAGA
* *
81492068 TTTAGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAAGCAAG
66 TTTAGCATCTCTGTATTGACAGAAAGCAAATCGAAGATAAGCAAG
* * *
81492113 GAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTATTAGTGGAGAGCAGATCGAAGATAGCAGA
1 GAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTAGCGGAGAGCAGATCAAAGATAGCAGA
* * *
81492178 TTTGGCATCTCTGTATTGGCGGAAAGCAAATCGAAGATA
66 TTTAGCATCTCTGTATTGACAGAAAGCAAATCGAAGATA
81492217 GCAGATTTGG
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
110 92 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (110 bp):
GAGCAGATCAAAGATAGCAAATTTGGCGTCTCTGTATTAGCGGAGAGCAGATCAAAGATAGCAGA
TTTAGCATCTCTGTATTGACAGAAAGCAAATCGAAGATAAGCAAG
Found at i:81492239 original size:154 final size:154
Alignment explanation
Indices: 81491959--81492260 Score: 478
Period size: 154 Copynumber: 2.0 Consensus size: 154
81491949 TATTGGTGGA
* * *
81491959 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCATATCAAAGATAGCAGA
1 GAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCAAAGATAGCAGA
* ** *
81492024 TTTGGCGTCTCTGTATTGGCGGTGAGCAGATCAAAGATAGCAGATTTAGCATCTCTGTATTGACA
66 TTTGGCATCTCTGTATTGGCGGAAAGCAAATCAAAGATAGCAGATTTAGCATCTCTGTATTGACA
81492089 GAGAGCAGATCGAAGATAAGCAAG
131 GAGAGCAGATCGAAGATAAGCAAG
** *
81492113 GAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTATTAGTGGAGAGCAGATCGAAGATAGCAGA
1 GAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCAAAGATAGCAGA
* * * *
81492178 TTTGGCATCTCTGTATTGGCGGAAAGCAAATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCA
66 TTTGGCATCTCTGTATTGGCGGAAAGCAAATCAAAGATAGCAGATTTAGCATCTCTGTATTGACA
81492243 GAGAGCAGATCGAAGATA
131 GAGAGCAGATCGAAGATA
81492261 GCAGATTTGG
Statistics
Matches: 134, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
154 134 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.24
Consensus pattern (154 bp):
GAGCAGATCGAAGATAGCAAATTTGGCGTCTCTGTATTAGCAGAGAGCAGATCAAAGATAGCAGA
TTTGGCATCTCTGTATTGGCGGAAAGCAAATCAAAGATAGCAGATTTAGCATCTCTGTATTGACA
GAGAGCAGATCGAAGATAAGCAAG
Found at i:81495835 original size:130 final size:131
Alignment explanation
Indices: 81495600--81495902 Score: 391
Period size: 130 Copynumber: 2.3 Consensus size: 131
81495590 ACGAGATTTG
*
81495600 ATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGTGTTTGCTCAAAAT
1 ATATTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGTGTTTGCTCAAAAT
* * * * * *
81495665 AATCGAATATCACTTCAAAATTTCACTTATGTCTTTTAAAACCCCTT-AAACGAAGGCGATGTGC
66 AATCAAATATCACTTCAAAATTTCACTCAGGTCTTCTAAAAACCCTTAAAACGAAGGCGATATGC
81495729 A
131 A
*
81495730 ATATTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTC-TCGTTTGCTTAAAA
1 ATATTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGT-GTTTGCTCAAAA
* * * *
81495794 TAATCAAATATCCCTTCAAAATTTCACTCAGGT-TTCCTAAAAATCTTTCAAAACGAAGGTGATA
65 TAATCAAATATCACTTCAAAATTTCACTCAGGTCTT-CTAAAAACCCTT-AAAACGAAGGCGATA
*
81495858 TTCA
128 TGCA
* * *
81495862 ATGTTTGGCAATT--TGAGAATCGTGCCCTATCGTGCTGGGTT
1 ATATTTGGCAATTCGTG-GAATCGTGCCCTAACGTGTTGGGTT
81495903 ACGCTTTTTC
Statistics
Matches: 152, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
129 3 0.02
130 99 0.65
131 23 0.15
132 27 0.18
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (131 bp):
ATATTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGTGTTTGCTCAAAAT
AATCAAATATCACTTCAAAATTTCACTCAGGTCTTCTAAAAACCCTTAAAACGAAGGCGATATGC
A
Found at i:81495938 original size:131 final size:131
Alignment explanation
Indices: 81495569--81496033 Score: 338
Period size: 130 Copynumber: 3.5 Consensus size: 131
81495559 TATAATCATT
* * * * * *
81495569 CAAAAATTCTTTAAAAAGAAGACGAGAT-TT-GATATTTGGCAATTCGCGGAATCGTGCCCTAAC
1 CAAAAACTCTTTAAAACGAAG--GAGATGTTCAATGTTTGGCAATTC-TGGAATCGTGCCCTATC
* * * * * * * * * *
81495632 GTGTTGGGTTGCAATTTCGT-GTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTTA-T
63 GTGCTGGGTTACAATTTC-TCATTTGCTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACG
81495695 GTCTT-
127 GT-TTC
** * * * * * *
81495700 TTAAAACCCCTT-AAACGAAGGCGATGTGCAATATTTGGCAATTCGTGGAATCGTGCCCTAACGT
1 CAAAAACTCTTTAAAACGAAGGAGATGTTCAATGTTTGGCAATTC-TGGAATCGTGCCCTATCGT
* * * * *
81495764 GTTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCA-GGTT
65 GCTGGGTTACAATTTCTCATTTGCTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGGTT
81495828 TC
130 TC
* *
81495830 CTAAAAA-TCTTTCAAAACGAAGGTGATATTCAATGTTTGGCAATT-TGAGAATCGTGCCCTATC
1 C-AAAAACTCTTT-AAAACGAAGGAGATGTTCAATGTTTGGCAATTCTG-GAATCGTGCCCTATC
** * * * *** *
81495893 GTGCTGGGTTACGCTTTTTCATTTG-TTCGAAACAATCGAAGATCCCTTTGGAATTTCACTCACT
63 GTGCTGGGTTACAATTTCTCATTTGCTT-AAAACAATCAAAGATCCCTTCAAAATTTCACTCACG
*
81495957 TTTTC
127 GTTTC
* * * * * *
81495962 CAAAAACTCTTTAAAACGAAAGAAATGTTCGATGATTGGCAATTCGGGGAATAGTGCCCTATCGT
1 CAAAAACTCTTTAAAACGAAGGAGATGTTCAATGTTTGGCAATTC-TGGAATCGTGCCCTATCGT
81496027 GCTGGGT
65 GCTGGGT
81496034 CGCAATCTCC
Statistics
Matches: 274, Mismatches: 47, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
128 4 0.01
129 4 0.01
130 103 0.38
131 102 0.37
132 60 0.22
133 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (131 bp):
CAAAAACTCTTTAAAACGAAGGAGATGTTCAATGTTTGGCAATTCTGGAATCGTGCCCTATCGTG
CTGGGTTACAATTTCTCATTTGCTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGGTTT
C
Found at i:81496093 original size:132 final size:133
Alignment explanation
Indices: 81495604--81496093 Score: 434
Period size: 132 Copynumber: 3.7 Consensus size: 133
81495594 GATTTGATAT
* * * *
81495604 TTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGT-GTTTGCTCAAAATAAT
1 TTGGCAATTCGGGGAATCGTGCCCTAACGTGCTGGGTCGCAATTTC-TCGTTTGTTCAAAATAAT
* * * * * * *
81495668 CGAATATCACTTCAAAATTTCACTTA-TGTCTTT--TAAAACCCCTT-AAACGAAGGCGATGTGC
65 CGAATATCCCTTCAAAATTTCACTCAGTGT-TTTCCAAAAACTCTTTAAAACGAAGGAGATGTTC
81495729 AAT-A
129 AATGA
* * *
81495733 TTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTT-AAAATAA
1 -TTGGCAATTCGGGGAATCGTGCCCTAACGTGCTGGGTCGCAATTTCTCGTTTG-TTCAAAATAA
* * *
81495797 TCAAATATCCCTTCAAAATTTCACTCAG-G-TTTCCTAAAAA-TCTTTCAAAACGAAGGTGATAT
64 TCGAATATCCCTTCAAAATTTCACTCAGTGTTTTCC-AAAAACTCTTT-AAAACGAAGGAGATGT
*
81495859 TCAATGT
127 TCAATGA
* * * * * * *
81495866 TTGGCAATT-TGAGAATCGTGCCCTATCGTGCTGGGTTACGC--TTTTTCATTTGTTCGAAACAA
1 TTGGCAATTCGGGGAATCGTGCCCTAACGTGCTGGG-T-CGCAATTTCTCGTTTGTTCAAAATAA
* *** * * *
81495928 TCGAAGATCCCTTTGGAATTTCACTCACT-TTTTCCAAAAACTCTTTAAAACGAAAGAAATGTTC
64 TCGAATATCCCTTCAAAATTTCACTCAGTGTTTTCCAAAAACTCTTTAAAACGAAGGAGATGTTC
*
81495992 GATGA
129 AATGA
* * * * *
81495997 TTGGCAATTCGGGGAATAGTGCCCTATCGTGCTGGGTCGCAATCTCCCGTTTGTTCAAAATAATT
1 TTGGCAATTCGGGGAATCGTGCCCTAACGTGCTGGGTCGCAATTTCTCGTTTGTTCAAAATAATC
* **
81496062 GAATATCTCTTCGGAATTTCACTC-GTGTTTTC
66 GAATATCCCTTCAAAATTTCACTCAGTGTTTTC
81496094 TAAGGTGAGG
Statistics
Matches: 293, Mismatches: 48, Indels: 36
0.78 0.13 0.10
Matches are distributed among these distances:
128 3 0.01
129 1 0.00
130 90 0.31
131 95 0.32
132 102 0.35
133 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (133 bp):
TTGGCAATTCGGGGAATCGTGCCCTAACGTGCTGGGTCGCAATTTCTCGTTTGTTCAAAATAATC
GAATATCCCTTCAAAATTTCACTCAGTGTTTTCCAAAAACTCTTTAAAACGAAGGAGATGTTCAA
TGA
Found at i:81498754 original size:22 final size:22
Alignment explanation
Indices: 81498715--81498757 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81498705 CCTTTATGTT
*
81498715 GGTCACTTGTCTTCGAGGACAA
1 GGTCACGTGTCTTCGAGGACAA
81498737 GGTCACGTGATCTT-GAGGACA
1 GGTCACGTG-TCTTCGAGGACA
81498758 TGTTTAGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (22 bp):
GGTCACGTGTCTTCGAGGACAA
Found at i:81513010 original size:217 final size:217
Alignment explanation
Indices: 81512635--81513071 Score: 829
Period size: 217 Copynumber: 2.0 Consensus size: 217
81512625 TGTCAATCGA
* * * *
81512635 AAAATCATGTTTGCCTGAGTACAAAGATGCTGAAATCTTAAAGAGTATAACTTGGTTGGAAAAAG
1 AAAATCATGTTTGCCTCAGTACAAAGATGCTGAAAACTTAAAGAGGATAACTTGGTTCGAAAAAG
*
81512700 CATTTCACATGAAAAGTAAAATTCCTGTATCTTCTCCGTAAATTGATTTAATGAGTACTCTGCTG
66 CATTTCACATAAAAAGTAAAATTCCTGTATCTTCTCCGTAAATTGATTTAATGAGTACTCTGCTG
81512765 ACACGGAGGCTGCTAAGTTGGCAGATAATATAAGTTAAACAATAGGTAGTTATGTAATTGCAGTT
131 ACACGGAGGCTGCTAAGTTGGCAGATAATATAAGTTAAACAATAGGTAGTTATGTAATTGCAGTT
81512830 ACAGCAAGGATACGGAGTTTTC
196 ACAGCAAGGATACGGAGTTTTC
81512852 AAAATCATGTTTGCCTCAGTACAAAGATGCTGAAAACTTAAAGAGGATAACTTGGTTCGAAAAAG
1 AAAATCATGTTTGCCTCAGTACAAAGATGCTGAAAACTTAAAGAGGATAACTTGGTTCGAAAAAG
81512917 CATTTCACATAAAAAGTAAAATTCCTGTATCTTCTCCGTAAATTGATTTAATGAGTACTCTGCTG
66 CATTTCACATAAAAAGTAAAATTCCTGTATCTTCTCCGTAAATTGATTTAATGAGTACTCTGCTG
81512982 ACACGGAGGCTGCTAAGTTGGCAGATAATATAAGTTAAACAATAGGTAGTTATGTAATTGCAGTT
131 ACACGGAGGCTGCTAAGTTGGCAGATAATATAAGTTAAACAATAGGTAGTTATGTAATTGCAGTT
81513047 ACAGCAAGGATACGGAGTTTTC
196 ACAGCAAGGATACGGAGTTTTC
81513069 AAA
1 AAA
81513072 GCGGACAAGC
Statistics
Matches: 215, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
217 215 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (217 bp):
AAAATCATGTTTGCCTCAGTACAAAGATGCTGAAAACTTAAAGAGGATAACTTGGTTCGAAAAAG
CATTTCACATAAAAAGTAAAATTCCTGTATCTTCTCCGTAAATTGATTTAATGAGTACTCTGCTG
ACACGGAGGCTGCTAAGTTGGCAGATAATATAAGTTAAACAATAGGTAGTTATGTAATTGCAGTT
ACAGCAAGGATACGGAGTTTTC
Found at i:81518915 original size:15 final size:16
Alignment explanation
Indices: 81518889--81518921 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
81518879 AACAAATAAT
81518889 ATAAAAATATTTAAAA
1 ATAAAAATATTTAAAA
81518905 ATAAAAA-ATTTAAAA
1 ATAAAAATATTTAAAA
81518920 AT
1 AT
81518922 TTAAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATAAAAATATTTAAAA
Found at i:81525717 original size:27 final size:27
Alignment explanation
Indices: 81525679--81525732 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
81525669 TATATACAAG
81525679 ATATTTTTTTAATATTCTGCATGTGCT
1 ATATTTTTTTAATATTCTGCATGTGCT
81525706 ATATTTTTTTAATATTCTGCATGTGCT
1 ATATTTTTTTAATATTCTGCATGTGCT
81525733 TTTTACAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (27 bp):
ATATTTTTTTAATATTCTGCATGTGCT
Found at i:81526985 original size:18 final size:18
Alignment explanation
Indices: 81526951--81527017 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 18
81526941 AAAATGTGAG
* * *
81526951 AAATGATATTTACATTTT
1 AAATGATGTTCACATTTC
*
81526969 AAATGATGTTCAGATTTC
1 AAATGATGTTCACATTTC
81526987 AAATGA---TCACATTTC
1 AAATGATGTTCACATTTC
81527002 AAATGATGTTCACATT
1 AAATGATGTTCACATT
81527018 GATGGAAACG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
15 14 0.34
18 27 0.66
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:81527536 original size:72 final size:71
Alignment explanation
Indices: 81527441--81527752 Score: 358
Period size: 72 Copynumber: 4.3 Consensus size: 71
81527431 CAATGCTAAA
* *
81527441 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGAAATTGAATTTATGTTCTACTTATCTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGAAATTGAATTTATGTTCTACTTATTTAT
81527506 GTGTAAT
66 GT-TAAT
* * ** *
81527513 CTAGTTTTATCAATGGCTGTTTATGTTTGGTTTTT-GAATATTGAATTTACATTCTATTTATTTA
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGAA-ATTGAATTTATGTTCTACTTATTTA
*
81527577 TGGATAAT
65 T-GTTAAT
* * * * *
81527585 CTAGTTTTATCAATAGTTGTTTATGTTTAGTCTTTGGATATTGAATTTATGGTCTAATTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGAAATTGAATTTATGTTCTACTTATTTAT
**
81527650 GCTTAGGG
66 G-TTA-AT
* ** * *
81527658 CTAGTTTTATCAATAATTGTTTATGTTTGACTTTTGGATATTAAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGAAATTGAATTTATGTTCTACTTATTTAT
* *
81527723 ACTAAAT
66 -GTTAAT
81527730 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
81527753 ATATGATTTT
Statistics
Matches: 201, Mismatches: 33, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
71 26 0.13
72 113 0.56
73 62 0.31
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.53
Consensus pattern (71 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGAAATTGAATTTATGTTCTACTTATTTAT
GTTAAT
Found at i:81528361 original size:15 final size:15
Alignment explanation
Indices: 81528337--81528369 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
81528327 AAGGTTAAAA
81528337 TTTAATTTT-ATATT
1 TTTAATTTTAATATT
81528351 TTTATATTTTAATATT
1 TTTA-ATTTTAATATT
81528367 TTT
1 TTT
81528370 GGTCGACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 5 0.29
16 8 0.47
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTAATTTTAATATT
Found at i:81529815 original size:27 final size:27
Alignment explanation
Indices: 81529767--81529925 Score: 141
Period size: 27 Copynumber: 5.9 Consensus size: 27
81529757 GCGAGGCTGC
* *
81529767 CAGATATTGT-GACGAAGTCACCAGATA
1 CAGATATTGTGGAAG-AGCCACCAGATA
81529794 CAGATATTGTGGAAGAGCCACCAGA-A
1 CAGATATTGTGGAAGAGCCACCAGATA
*
81529820 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGAAGAGCCACCAGATA
* * *
81529847 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGAAGAGCCACCAGATA
*
81529874 CAGATATATGTGGCAA-AGCCACTAGAT-
1 CAGATAT-TGTGG-AAGAGCCACCAGATA
* *
81529901 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGAAGAGCCACCAG
81529926 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
26 11 0.10
27 93 0.83
28 8 0.07
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGAAGAGCCACCAGATA
Found at i:81529926 original size:54 final size:54
Alignment explanation
Indices: 81529767--81529928 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
81529757 GCGAGGCTGC
* * * * * *
81529767 CAGATAT-TGTGACGAAGTCACCAGATACAGAT-ATTGTGGAAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
81529820 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
*
81529874 CAGATATATGTGGCAAAGCCACTAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
81529928 C
1 C
81529929 GCTTCCTCCA
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 12 0.12
54 86 0.88
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:81530058 original size:26 final size:27
Alignment explanation
Indices: 81530029--81530103 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 27
81530019 CAAAATTAAC
*
81530029 CCTAGGGGTATAATAGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
81530055 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
81530083 CATAGGGGTATTATAGTAATT
1 CCTAGGGGTATAATAGTAATT
81530104 GAGCTGATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
28 19 0.45
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:81531577 original size:26 final size:26
Alignment explanation
Indices: 81531546--81531653 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81531536 TGAAATGTCC
*
81531546 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81531572 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81531598 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81531624 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81531650 ATCA
1 ATCA
81531654 ATTTGGACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81532747 original size:20 final size:21
Alignment explanation
Indices: 81532696--81532752 Score: 55
Period size: 24 Copynumber: 2.6 Consensus size: 21
81532686 TTAAATTTAA
*
81532696 TAAATAATTAATATTAATTACT
1 TAAAT-ATTAAAATTAATTACT
81532718 TAGAATTATTTAAAATTAA-TA-T
1 TA-AA-TA-TTAAAATTAATTACT
81532740 TAAATATTAAAAT
1 TAAATATTAAAAT
81532753 ATTAACAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
19 7 0.23
20 2 0.06
21 2 0.06
22 5 0.16
23 5 0.16
24 10 0.32
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TAAATATTAAAATTAATTACT
Found at i:81532948 original size:13 final size:13
Alignment explanation
Indices: 81532932--81532984 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
81532922 TTTAAACCAA
*
81532932 ACTTTTCAAAAGC
1 ACTTCTCAAAAGC
*
81532945 ACTTCCCAAAAGC
1 ACTTCTCAAAAGC
* * *
81532958 ACTTTTCCACAGC
1 ACTTCTCAAAAGC
81532971 ACTTCTCAAAAGC
1 ACTTCTCAAAAGC
81532984 A
1 A
81532985 TTGCCAAACT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.36, C:0.32, G:0.08, T:0.25
Consensus pattern (13 bp):
ACTTCTCAAAAGC
Found at i:81532961 original size:26 final size:26
Alignment explanation
Indices: 81532932--81532984 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
81532922 TTTAAACCAA
81532932 ACTTTTCAAAAGCACTTCCCAAAAGC
1 ACTTTTCAAAAGCACTTCCCAAAAGC
* * *
81532958 ACTTTTCCACAGCACTTCTCAAAAGC
1 ACTTTTCAAAAGCACTTCCCAAAAGC
81532984 A
1 A
81532985 TTGCCAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.32, G:0.08, T:0.25
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCCCAAAAGC
Found at i:81549858 original size:27 final size:27
Alignment explanation
Indices: 81549791--81549859 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
81549781 TTTAATGGGT
*
81549791 TTCTGGTGTGTTTGGGAGGATTATTTA
1 TTCTGGTGTGTTTGGGAGGATTATGTA
**
81549818 TTCTGGTGCATTTGGGAGGATTATGTA
1 TTCTGGTGTGTTTGGGAGGATTATGTA
*
81549845 TTCTTGTGTGTTTGG
1 TTCTGGTGTGTTTGG
81549860 TTGGAATCCG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.13, C:0.06, G:0.33, T:0.48
Consensus pattern (27 bp):
TTCTGGTGTGTTTGGGAGGATTATGTA
Found at i:81551286 original size:49 final size:50
Alignment explanation
Indices: 81551162--81551294 Score: 157
Period size: 50 Copynumber: 2.7 Consensus size: 50
81551152 TATGAGATGT
* *
81551162 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGAATATGTGAGA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCAATATGTAAGA
* * *
81551212 G-CTAGTGTAAGACCATGTTTAGGACATGGCGTCGGC-CTCAAT-T-TCAATA
1 GTC-AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CAATATGT-AAGA
*
81551261 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCG
81551295 ACTTGATGGA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
48 1 0.01
49 34 0.48
50 36 0.51
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCAATATGTAAGA
Found at i:81557474 original size:28 final size:28
Alignment explanation
Indices: 81557413--81557561 Score: 201
Period size: 28 Copynumber: 5.3 Consensus size: 28
81557403 ATTAAGTCCA
* *
81557413 CACACTCAGTGCTATATAATC-AACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
81557440 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
81557468 CACACTTAGTGCTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
81557496 CACACTTAGTGCTACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * * * *
81557524 CACACTTAGTTCTGTACAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
81557553 CACACTTAG
1 CACACTTAG
81557562 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.18
28 75 0.68
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:81560678 original size:22 final size:22
Alignment explanation
Indices: 81560635--81560678 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81560625 GCCCAAAGAG
**
81560635 CTTTCACACTTGCTGGGAATTC
1 CTTTCACACTTGCTGCCAATTC
* *
81560657 CTTTCACACTTGTTGCCCATTC
1 CTTTCACACTTGCTGCCAATTC
81560679 AGTTTTTGAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.39
Consensus pattern (22 bp):
CTTTCACACTTGCTGCCAATTC
Found at i:81567718 original size:79 final size:81
Alignment explanation
Indices: 81567582--81567766 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
81567572 TTGAATGATG
*
81567582 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
81567646 TGTGCGAGATA-ATAA
66 TGTGCGAGATACATAA
* * * * **
81567661 TTCCGGGCGAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
81567723 TTTGTGCGAGTTACTATAA
64 TTTGTGCGAGATAC-ATAA
*
81567742 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81567767 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 54 0.60
80 31 0.34
81 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACATAA
Found at i:81567773 original size:40 final size:40
Alignment explanation
Indices: 81567582--81567766 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
81567572 TTGAATGATG
* * * *
81567582 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
81567622 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAATAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81567662 TCCGGGCGAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81567701 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81567742 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81567767 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81567788 original size:79 final size:78
Alignment explanation
Indices: 81567635--81567789 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 78
81567625 GGACTAAGAT
**
81567635 CCGAAGGCATTTGTGCGAGATAATAATTCCGGGCGAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATAATAA-TCCGGGCGAAGCCCGAAGGCATTTGAACGAGTTACTAA
81567700 ATCCGGGTTAAGTC
65 ATCCGGGTTAAGTC
* * *
81567714 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATA--ATAATCCGGGCGAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
81567777 TATATCC-GGTTAA
62 TAAATCCGGGTTAA
81567790 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
79 37 0.56
80 25 0.38
81 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATAATAATCCGGGCGAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAGTC
Found at i:81568120 original size:47 final size:47
Alignment explanation
Indices: 81567990--81568347 Score: 581
Period size: 47 Copynumber: 7.6 Consensus size: 47
81567980 AAGGGTTGGT
81567990 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
81568037 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
81568086 AATCTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81568133 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81568180 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
81568227 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
81568274 AATGTGAAAGTATATATATGTGACAGGGTCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
81568321 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
81568348 TCCTGAAGGG
Statistics
Matches: 290, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 245 0.84
49 45 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:81568522 original size:37 final size:37
Alignment explanation
Indices: 81568466--81568544 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81568456 CCGAGCTCTA
* * *
81568466 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
81568503 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81568540 AAGAC
1 AAGAC
81568545 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81570161 original size:35 final size:35
Alignment explanation
Indices: 81570115--81570184 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
81570105 CACACGCCTA
*
81570115 TGCCTGAGGCCGTGTCATCCGCACGGCTGAGACAT
1 TGCCTGAGGCCGTGTCATCCACACGGCTGAGACAT
81570150 TGCCTGAGGCCGTGTCATCCACACGGCTGAGACAT
1 TGCCTGAGGCCGTGTCATCCACACGGCTGAGACAT
81570185 ACACCCGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (35 bp):
TGCCTGAGGCCGTGTCATCCACACGGCTGAGACAT
Found at i:81577377 original size:46 final size:48
Alignment explanation
Indices: 81577321--81577443 Score: 178
Period size: 46 Copynumber: 2.6 Consensus size: 48
81577311 GGTGGTATGT
*
81577321 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAC-GA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAGAC
* * *
81577367 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACATAC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAGAC
* *
81577415 AAGCTAGTGTAAGACCTGTCTGGGACATG
1 GAGCTAGTGTAAGACATGTCTGGGACATG
81577444 GCATTAGCTT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 41 0.60
47 1 0.01
48 26 0.38
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAGAC
Found at i:81577579 original size:49 final size:48
Alignment explanation
Indices: 81577461--81577592 Score: 183
Period size: 49 Copynumber: 2.7 Consensus size: 48
81577451 CTTATTGTGT
* * * *
81577461 GTCAGTGTAAGACCTGTCTGGGATATGACATCGACACGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGACATCGACACAATACATGAAA
* ** *
81577509 GCCAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCAATACATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGACATCGA-CACAATACATGAAA
81577558 GTCAGTGTAAGACCTGTCTGGGACATGACATCGAC
1 GTCAGTGTAAGACCTGTCTGGGACATGACATCGAC
81577593 TTTAATGTGC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 31 0.43
49 41 0.57
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (48 bp):
GTCAGTGTAAGACCTGTCTGGGACATGACATCGACACAATACATGAAA
Found at i:81583564 original size:25 final size:25
Alignment explanation
Indices: 81583530--81583579 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
81583520 GAGTAGGGCC
* *
81583530 ATATTCACAGTTCGTGTAAGCATTT
1 ATATTCACAGCTCGTGCAAGCATTT
*
81583555 ATATTCACAGCTCGTGCGAGCATTT
1 ATATTCACAGCTCGTGCAAGCATTT
81583580 CTATCACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (25 bp):
ATATTCACAGCTCGTGCAAGCATTT
Found at i:81595605 original size:35 final size:35
Alignment explanation
Indices: 81595451--81595616 Score: 147
Period size: 35 Copynumber: 4.7 Consensus size: 35
81595441 TTTTCAGTAG
* * * *
81595451 GCATGCTTTACATGCGAATCAGAATCAA-CATAGT-
1 GCATGCTTAACATGCGAATCAAAAT-AAGAATAATA
* * * * *
81595485 GACATGCTTTACATGCAAATCAAAATAAGTATAGTG
1 G-CATGCTTAACATGCGAATCAAAATAAGAATAATA
* ** * * *
81595521 GCATTCTTAACATGAAAATCATAATAAAAAAAATA
1 GCATGCTTAACATGCGAATCAAAATAAGAATAATA
* *
81595556 GCATGGTTAACATGCGAATCATAATAAGAATAATA
1 GCATGCTTAACATGCGAATCAAAATAAGAATAATA
81595591 GCATGCTTAACATGCGAATCAAAATA
1 GCATGCTTAACATGCGAATCAAAATA
81595617 TCAATAAACT
Statistics
Matches: 109, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
34 3 0.03
35 105 0.96
36 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCAAAATAAGAATAATA
Found at i:81595611 original size:70 final size:70
Alignment explanation
Indices: 81595451--81595616 Score: 163
Period size: 70 Copynumber: 2.4 Consensus size: 70
81595441 TTTTCAGTAG
* * * * * * * *
81595451 GCATGCTTTACATGCGAATCAGAATCAACATAGTGACATGCTTTACATGCAAATCAAAATAAGTA
1 GCATGCTTAACATGCGAATCAAAATAAAAAAAATGACATGCTTAACATGCAAATCAAAATAAGAA
* *
81595516 TAGTG
66 TAATA
* ** * * * *
81595521 GCATTCTTAACATGAAAATCATAATAAAAAAAAT-AGCATGGTTAACATGCGAATCATAATAAGA
1 GCATGCTTAACATGCGAATCAAAATAAAAAAAATGA-CATGCTTAACATGCAAATCAAAATAAGA
81595585 ATAATA
65 ATAATA
81595591 GCATGCTTAACATGCGAATCAAAATA
1 GCATGCTTAACATGCGAATCAAAATA
81595617 TCAATAAACT
Statistics
Matches: 75, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
69 1 0.01
70 74 0.99
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (70 bp):
GCATGCTTAACATGCGAATCAAAATAAAAAAAATGACATGCTTAACATGCAAATCAAAATAAGAA
TAATA
Found at i:81596059 original size:16 final size:16
Alignment explanation
Indices: 81596038--81596069 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81596028 TAGAACGAAG
81596038 TTGTTGTAGTGAATAA
1 TTGTTGTAGTGAATAA
81596054 TTGTTGTAGTGAATAA
1 TTGTTGTAGTGAATAA
81596070 CTCTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (16 bp):
TTGTTGTAGTGAATAA
Found at i:81609789 original size:23 final size:23
Alignment explanation
Indices: 81609757--81609800 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
81609747 GACTCACACG
* *
81609757 CGCTATGTTAGTCCTAGAATCAA
1 CGCTACGTTAGTCCTAAAATCAA
81609780 CGCTACGTTAGTCCTAAAATC
1 CGCTACGTTAGTCCTAAAATC
81609801 GACTAAATCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (23 bp):
CGCTACGTTAGTCCTAAAATCAA
Found at i:81612512 original size:27 final size:26
Alignment explanation
Indices: 81612481--81612591 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 26
81612471 TGGCTGCCAA
* * *
81612481 AACAGGTATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
*
81612507 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
81612534 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
** *
81612561 AAACAGATATTTGTGGCGTAGCCACTAG
1 -AACAGATA-TTGTGGCAAAGCCACCAG
81612589 AAC
1 AAC
81612592 GCTTCCTCCA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.11
27 42 0.56
28 25 0.33
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:81612574 original size:28 final size:28
Alignment explanation
Indices: 81612501--81612590 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
81612491 GTGACAAAGT
* *
81612501 CACCAGATACAGATA-TTGTGGCAGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
81612528 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
81612555 CACCAGAAACAGATATTTGTGGCGTAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
81612583 CACTAGAA
1 CACCAGAA
81612591 CGCTTCCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 7 0.12
27 23 0.40
28 27 0.47
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:81612721 original size:27 final size:26
Alignment explanation
Indices: 81612691--81612756 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
81612681 GTCAAAATTA
81612691 ACCTTAGGGGTATAATGGTAATTTTGC
1 ACCTTAGGGGTATAATGGTAATTTT-C
*
81612718 ACC-TAAGGGTATAATGGTAATTTTC
1 ACCTTAGGGGTATAATGGTAATTTTC
*
81612743 ATACTTAGGGGTAT
1 A-CCTTAGGGGTAT
81612757 TTAGTAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.06
26 21 0.62
27 11 0.32
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (26 bp):
ACCTTAGGGGTATAATGGTAATTTTC
Found at i:81613701 original size:17 final size:16
Alignment explanation
Indices: 81613675--81613707 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
81613665 GGGTTCGGTT
81613675 ATGGAGAAAAGAAAAG
1 ATGGAGAAAAGAAAAG
81613691 ATGGAAGAAAAGAAAAG
1 ATGG-AGAAAAGAAAAG
81613708 GTGAGAAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (16 bp):
ATGGAGAAAAGAAAAG
Found at i:81619754 original size:20 final size:20
Alignment explanation
Indices: 81619729--81619768 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81619719 ACAACCATTG
81619729 CCACACTTTAACTGAGTGTT
1 CCACACTTTAACTGAGTGTT
81619749 CCACACTTTAACTGAGTGTT
1 CCACACTTTAACTGAGTGTT
81619769 TGTTCATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (20 bp):
CCACACTTTAACTGAGTGTT
Found at i:81620436 original size:27 final size:26
Alignment explanation
Indices: 81620396--81620510 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 26
81620386 AGCATGGCTG
* *
81620396 CCAGAACAGGTATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
81620422 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
81620449 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * * *
81620476 CTAGAAACAAATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGACAGAGCCA
*
81620504 CTAGAAC
1 CCAGAAC
81620511 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 12 0.15
27 42 0.52
28 26 0.32
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:81620493 original size:28 final size:28
Alignment explanation
Indices: 81620435--81620509 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
81620425 GATACAGATA
* * *
81620435 TTGTGGCAGAGCCACCAG-AACAGATAT
1 TTGTGGCATAGCCACTAGAAACAAATAT
81620462 TTGTGGCATAGCCACTAGAAACAAATAT
1 TTGTGGCATAGCCACTAGAAACAAATAT
81620490 TTGTGGCATAGCCACTAGAA
1 TTGTGGCATAGCCACTAGAA
81620510 CGCTTCCTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 16 0.36
28 28 0.64
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (28 bp):
TTGTGGCATAGCCACTAGAAACAAATAT
Found at i:81620503 original size:55 final size:53
Alignment explanation
Indices: 81620396--81620510 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 53
81620386 AGCATGGCTG
* * * *
81620396 CCAGAACAGGTATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAAATATTGTGGCAGAGCCA
* * * *
81620449 CCAGAACAGATATTTGTGGCATAGCCACTAGAAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAAATA-TTGTGGCAGAGCCA
*
81620504 CTAGAAC
1 CCAGAAC
81620511 GCTTCCTCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 11 0.22
54 21 0.41
55 19 0.37
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAAATATTGTGGCAGAGCCA
Found at i:81621622 original size:17 final size:16
Alignment explanation
Indices: 81621596--81621628 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
81621586 GGGTTCGGCT
81621596 ATGGAGAAAAGAAAAG
1 ATGGAGAAAAGAAAAG
81621612 ATGGAAGAAAAGAAAAG
1 ATGG-AGAAAAGAAAAG
81621629 GTGAGAAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (16 bp):
ATGGAGAAAAGAAAAG
Found at i:81624066 original size:21 final size:21
Alignment explanation
Indices: 81624024--81624066 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81624014 TCATTTTTAG
* *
81624024 CAACTTCCTCTACTTCAGCAA
1 CAACTTCCTCTACTGCAACAA
*
81624045 CAACTTCCTCTTCTGCAACAA
1 CAACTTCCTCTACTGCAACAA
81624066 C
1 C
81624067 TTCTACTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.40, G:0.05, T:0.28
Consensus pattern (21 bp):
CAACTTCCTCTACTGCAACAA
Found at i:81624075 original size:18 final size:18
Alignment explanation
Indices: 81624032--81624077 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
81624022 AGCAACTTCC
*
81624032 TCTACTTCAGCAACAACT
1 TCTACTTCTGCAACAACT
81624050 TCCT-CTTCTGCAACAACT
1 T-CTACTTCTGCAACAACT
81624068 TCTACTTCTG
1 TCTACTTCTG
81624078 TAGCATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.24, C:0.35, G:0.07, T:0.35
Consensus pattern (18 bp):
TCTACTTCTGCAACAACT
Found at i:81643876 original size:48 final size:48
Alignment explanation
Indices: 81643817--81644012 Score: 152
Period size: 48 Copynumber: 4.1 Consensus size: 48
81643807 CCTGGATATT
* *
81643817 GTCTTATATGGGACCACTTATCGATGCCAATGCCATGTCCCAGACATG
1 GTCTTACATGGGACCACATATCGATGCCAATGCCATGTCCCAGACATG
* *
81643865 GTCTTACATGGGACCACACAT--AT-CGAA-GCCGATAG-CCCA-ACTATG
1 GTCTTACATGGGACCACATATCGATGCCAATGCC-AT-GTCCCAGAC-ATG
** * * * * * *
81643910 GTCTTACATGATATTCTCATATCGATACCGATGACATGTCCCAAACATG
1 GTCTTACATGGGA-CCACATATCGATGCCAATGCCATGTCCCAGACATG
* ** * *
81643959 GTCTTACATGGGATCACATATCGATGCTGATGCCATATCCCAGATATG
1 GTCTTACATGGGACCACATATCGATGCCAATGCCATGTCCCAGACATG
*
81644007 GCCTTA
1 GTCTTA
81644013 TACGGGATCT
Statistics
Matches: 116, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
44 5 0.04
45 23 0.20
46 8 0.07
48 54 0.47
49 22 0.19
50 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
GTCTTACATGGGACCACATATCGATGCCAATGCCATGTCCCAGACATG
Found at i:81647346 original size:29 final size:29
Alignment explanation
Indices: 81647311--81647380 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
81647301 TGAGATTGGC
* *
81647311 ACTAAGTGTGCGGGCTTGAAA-TGCATGGA
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGA
* *
81647340 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGAGTTGAAAGTACATGGA
81647369 ACTAAGTGTGCG
1 ACTAAGTGTGCG
81647381 TGGTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGA
Found at i:81655339 original size:29 final size:29
Alignment explanation
Indices: 81655304--81655377 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81655294 GTTGTGAGAT
* *
81655304 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81655333 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81655362 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81655378 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81665256 original size:66 final size:66
Alignment explanation
Indices: 81665150--81665273 Score: 194
Period size: 66 Copynumber: 1.9 Consensus size: 66
81665140 ATCTAGACAG
* *
81665150 CTGTCAGGTGCGACGACAATTCTGAACGCAATCTTGAATTAACCCATGTAGTGACATTGTGAACA
1 CTGTCAGGTGCGACGACAATTCTGAACGCAATCTGGAATTAACCCATGTAGCGACATTGTGAACA
81665215 T
66 T
* * * *
81665216 CTGTCAGGTGTGGCGACAATTCTGGACGCAATCTGGAATTAACTCATGTAGCGACATT
1 CTGTCAGGTGCGACGACAATTCTGAACGCAATCTGGAATTAACCCATGTAGCGACATT
81665274 AATGCAATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (66 bp):
CTGTCAGGTGCGACGACAATTCTGAACGCAATCTGGAATTAACCCATGTAGCGACATTGTGAACA
T
Done.