Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 256 of 318
Found at i:81674160 original size:26 final size:26
Alignment explanation
Indices: 81674131--81674194 Score: 121
Period size: 25 Copynumber: 2.5 Consensus size: 26
81674121 TTTTCTTGGA
81674131 AATTTTACTAGGGGTAAAATCTTCAT
1 AATTTTACTAGGGGTAAAATCTTCAT
81674157 AATTTTACTA-GGGTAAAATCTTCAT
1 AATTTTACTAGGGGTAAAATCTTCAT
81674182 AATTTTACTAGGG
1 AATTTTACTAGGG
81674195 ATGAGAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 25 0.68
26 12 0.32
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (26 bp):
AATTTTACTAGGGGTAAAATCTTCAT
Found at i:81676529 original size:36 final size:35
Alignment explanation
Indices: 81676439--81676534 Score: 122
Period size: 36 Copynumber: 2.7 Consensus size: 35
81676429 ACATGTTGAT
81676439 ATTCTGATTCGCATGTTAAGCATGC-TATTAATCTA
1 ATTCTGATTCGCATGTTAAGCATGCAT-TTAATCTA
* * ** *
81676474 ATTTTGACTCGCATGTTAAGCATGTCATTTTTTCTG
1 ATTCTGATTCGCATGTTAAGCATG-CATTTAATCTA
81676510 ATTCTGATTCGCATGTTAAGCATGC
1 ATTCTGATTCGCATGTTAAGCATGC
81676535 CATTGTGTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
35 23 0.44
36 28 0.54
37 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (35 bp):
ATTCTGATTCGCATGTTAAGCATGCATTTAATCTA
Found at i:81677925 original size:22 final size:22
Alignment explanation
Indices: 81677875--81677927 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
81677865 ACTTGTACGG
* *
81677875 GATTTGCACTACGGTGCCTACT
1 GATTCGCACTACGGTGCCCACT
*
81677897 -ATTCGCACTACGGTGCCCATT
1 GATTCGCACTACGGTGCCCACT
81677918 GATTCGCACT
1 GATTCGCACT
81677928 TCAGTATCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (22 bp):
GATTCGCACTACGGTGCCCACT
Found at i:81677960 original size:22 final size:22
Alignment explanation
Indices: 81677891--81677962 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
81677881 CACTACGGTG
* * *
81677891 CCTACT-ATTCGCACTACGGTG
1 CCTACTGATTCGCACTTCAGTA
* *
81677912 CCCATTGATTCGCACTTCAGTA
1 CCTACTGATTCGCACTTCAGTA
* * **
81677934 TCTACTGATTTGCACTTTGGTA
1 CCTACTGATTCGCACTTCAGTA
81677956 CCTACTG
1 CCTACTG
81677963 TTAAAGCACT
Statistics
Matches: 38, Mismatches: 12, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
21 4 0.11
22 34 0.89
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (22 bp):
CCTACTGATTCGCACTTCAGTA
Found at i:81684478 original size:19 final size:19
Alignment explanation
Indices: 81684432--81684479 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
81684422 GTATATATTT
81684432 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
81684450 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
81684469 TAATTTTTATT
1 TAAATTTTATT
81684480 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:81684541 original size:43 final size:43
Alignment explanation
Indices: 81684493--81684585 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
81684483 ATTCTAGAAA
81684493 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
81684536 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
81684579 TATTTTC
1 TATTTTC
81684586 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:81689203 original size:19 final size:19
Alignment explanation
Indices: 81689157--81689204 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
81689147 GTATATATTT
81689157 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
81689175 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
81689194 TAAGTTTTATT
1 TAAATTTTATT
81689205 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:81689266 original size:43 final size:43
Alignment explanation
Indices: 81689218--81689310 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
81689208 ATTCTAGAAA
81689218 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
81689261 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
81689304 TATTTTC
1 TATTTTC
81689311 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:81693053 original size:29 final size:29
Alignment explanation
Indices: 81693014--81693092 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
81693004 CTTAATAATC
*
81693014 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
81693044 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
81693073 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
81693093 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:81697898 original size:23 final size:23
Alignment explanation
Indices: 81697867--81697930 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
81697857 CCACACGGCT
* *
81697867 ATGTCACCCTAGTTTACATGGTC
1 ATGTGACCCTAGTTTACATGGGC
*
81697890 ATGTGACCCTACTTTACATGGGC
1 ATGTGACCCTAGTTTACATGGGC
*
81697913 GTGTGACCCT-GCTTTACA
1 ATGTGACCCTAG-TTTACA
81697931 CTTTTGTCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (23 bp):
ATGTGACCCTAGTTTACATGGGC
Found at i:81700441 original size:48 final size:48
Alignment explanation
Indices: 81700361--81700516 Score: 213
Period size: 48 Copynumber: 3.2 Consensus size: 48
81700351 TCTGGGATAT
* * * * *
81700361 GGCATCGGTATGTGATCCCGTATAAGATCATGTCTGGGACATGGCATC
1 GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
* *
81700409 GGCATCGTTATGTGAGCTAGTGTAAGGCCATGTCTGGGACATGGCATC
1 GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
* * *
81700457 GGCATTGTTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATT
1 GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
*
81700505 GGCATCATTATG
1 GGCATCGTTATG
81700517 GCATCGGCAT
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 94 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (48 bp):
GGCATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
Found at i:81700519 original size:17 final size:17
Alignment explanation
Indices: 81700497--81700532 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
81700487 TGTCTAGGAC
*
81700497 ATGGCATTGGCATCATT
1 ATGGCATCGGCATCATT
*
81700514 ATGGCATCGGCATCGTT
1 ATGGCATCGGCATCATT
81700531 AT
1 AT
81700533 TTGAACCAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (17 bp):
ATGGCATCGGCATCATT
Found at i:81700553 original size:65 final size:65
Alignment explanation
Indices: 81700449--81700574 Score: 207
Period size: 65 Copynumber: 1.9 Consensus size: 65
81700439 TGTCTGGGAC
* * *
81700449 ATGGCATCGGCATTGTTATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATCATT
1 ATGGCATCGGCATCGTTATGTGAACCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCATT
* *
81700514 ATGGCATCGGCATCGTTATTTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 ATGGCATCGGCATCGTTATGTGAACCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
81700575 GAGGCATCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (65 bp):
ATGGCATCGGCATCGTTATGTGAACCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCATT
Found at i:81700662 original size:43 final size:42
Alignment explanation
Indices: 81700544--81700662 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 42
81700534 TGAACCAGTG
* * *
81700544 TAAGACCATGTCTGGGACATGGCATCGGCATGAGGCATCCTG
1 TAAGACCATGTCTGGGACATGGCATCGGTATGAGACATCCTA
* ** **
81700586 TAAGACCATAG-CTGGGCCATTGGCATCAATATGAGATTTCCATA
1 TAAGACCAT-GTCTGGGACA-TGGCATCGGTATGAGACATCC-TA
* *
81700630 TAAGACCATGTCTAGGACATGGCATTGGTATGA
1 TAAGACCATGTCTGGGACATGGCATCGGTATGA
81700663 TAAATCATGT
Statistics
Matches: 60, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
42 16 0.27
43 28 0.47
44 16 0.27
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATCGGTATGAGACATCCTA
Found at i:81708482 original size:20 final size:20
Alignment explanation
Indices: 81708456--81708504 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
81708446 AAAAACCCTC
*
81708456 CATTTACTTTCTTACCA-TT
1 CATTTACTTACTTACCATTT
* *
81708475 CTATTTACCTACTTTCCATTT
1 C-ATTTACTTACTTACCATTT
81708496 CATTTACTT
1 CATTTACTT
81708505 CGCATAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (20 bp):
CATTTACTTACTTACCATTT
Found at i:81710417 original size:27 final size:27
Alignment explanation
Indices: 81710376--81710429 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81710366 TGTCATGTGA
* *
81710376 AATTGAATGAAAAATTATTGTTACATG
1 AATTGAATGAAAAATTACTATTACATG
**
81710403 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGAAAAATTACTATTACATG
81710430 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGAAAAATTACTATTACATG
Found at i:81710743 original size:49 final size:50
Alignment explanation
Indices: 81710682--81710906 Score: 242
Period size: 49 Copynumber: 4.5 Consensus size: 50
81710672 TGAGGTCACG
* *
81710682 TGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* * * ** * * * *
81710731 TGTGTAGTACTAAGTGCAAGTTACTATGCATACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCGCA
* * **
81710782 TGTCTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT--CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
* *
81710830 TGTTTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT-GGTCGCA
1 TG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
81710881 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81710907 TGCGTACTAG
Statistics
Matches: 142, Mismatches: 28, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
48 4 0.03
49 59 0.42
50 40 0.28
51 39 0.27
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCA
Found at i:81712887 original size:18 final size:18
Alignment explanation
Indices: 81712864--81712898 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81712854 AGTATAGGGG
*
81712864 GTTTTCGTAAATTTTTTT
1 GTTTTCCTAAATTTTTTT
*
81712882 GTTTTCCTCAATTTTTT
1 GTTTTCCTAAATTTTTT
81712899 CACTCGATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.11, G:0.09, T:0.66
Consensus pattern (18 bp):
GTTTTCCTAAATTTTTTT
Found at i:81714217 original size:15 final size:15
Alignment explanation
Indices: 81714197--81714226 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81714187 AAAAAAGGGC
81714197 TAGTCACAGCACCAA
1 TAGTCACAGCACCAA
*
81714212 TAGTCATAGCACCAA
1 TAGTCACAGCACCAA
81714227 ATTGGACGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.30, G:0.13, T:0.17
Consensus pattern (15 bp):
TAGTCACAGCACCAA
Found at i:81721067 original size:27 final size:27
Alignment explanation
Indices: 81721026--81721082 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
81721016 AATTCACTTT
81721026 TCAATTTCCAATCAACAC-CAATTTCAA
1 TCAATTTCCAATCAACACAC-ATTTCAA
*
81721053 TCAA-TTCCAATTCAATACACATTTCAA
1 TCAATTTCCAA-TCAACACACATTTCAA
81721080 TCA
1 TCA
81721083 TTCATATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 6 0.22
27 20 0.74
28 1 0.04
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (27 bp):
TCAATTTCCAATCAACACACATTTCAA
Found at i:81721821 original size:16 final size:15
Alignment explanation
Indices: 81721770--81721822 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
81721760 GTTATATACT
81721770 CATGAATTGAGTATGG
1 CATGAATTGAGTAT-G
* * *
81721786 TATGAAATGATGTATT
1 CATGAATTGA-GTATG
81721802 CATGAATTGAGTACTG
1 CATGAATTGAGTA-TG
81721818 CATGA
1 CATGA
81721823 CTGATGCCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 3 0.10
16 22 0.76
17 4 0.14
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.34
Consensus pattern (15 bp):
CATGAATTGAGTATG
Found at i:81723139 original size:43 final size:43
Alignment explanation
Indices: 81723089--81723190 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
81723079 TCCCGGACGT
* *
81723089 GGTCTTACATGTAATTCAG-TACCGATG-TCTCTGTCCCAGATAG
1 GGTCTTACATGTAAATCAGATA-CGATGCT-TATGTCCCAGATAG
* * *
81723132 GGTCTTACACG-AAATCAGATATGATGCTTATGTCCCAGATAT
1 GGTCTTACATGTAAATCAGATACGATGCTTATGTCCCAGATAG
81723174 GGTCTTACATGTAAATC
1 GGTCTTACATGTAAATC
81723191 TCAAATCAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
42 32 0.64
43 18 0.36
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAGATACGATGCTTATGTCCCAGATAG
Found at i:81723519 original size:8 final size:8
Alignment explanation
Indices: 81723506--81723544 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
81723496 TACAATTCAA
*
81723506 ATTCAACC
1 ATTCAATC
81723514 ATTCAATC
1 ATTCAATC
81723522 ATTCAATC
1 ATTCAATC
*
81723530 ATTCATTTC
1 ATTCA-ATC
81723539 ATTCAA
1 ATTCAA
81723545 AATAATTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (8 bp):
ATTCAATC
Found at i:81733789 original size:35 final size:33
Alignment explanation
Indices: 81733750--81733818 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 33
81733740 TAATTCTCTG
81733750 AAAGGAG-AGAAAAAGAGGTAAATAGTTTGCTAAAA
1 AAAGGAGAAGAAAAAGA-GTAAA-AG-TTGCTAAAA
*
81733785 AAAGGAGAAAGATAAAGAGTAAAAGTTGCTAAAA
1 AAAGGAG-AAGAAAAAGAGTAAAAGTTGCTAAAA
81733819 TGTTGGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
34 9 0.29
35 9 0.29
36 5 0.16
37 8 0.26
ACGTcount: A:0.57, C:0.03, G:0.25, T:0.16
Consensus pattern (33 bp):
AAAGGAGAAGAAAAAGAGTAAAAGTTGCTAAAA
Found at i:81741413 original size:40 final size:40
Alignment explanation
Indices: 81741241--81741406 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
81741231 AACCCAAGTA
* *
81741241 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81741280 CCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81741320 CCTTCGGGACTTAGCCGGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81741360 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81741400 CCTTCGG
1 CCTTCGG
81741407 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.11
40 103 0.89
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81749347 original size:40 final size:40
Alignment explanation
Indices: 81749271--81749473 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
81749261 CCCAAGTATG
* * *
81749271 TTCGGGATTTAG-CCGGATATAG-CAACTCGCCCAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
* *
81749310 TTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
**
81749350 TTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
* *
81749390 TTCGGGACTTAGCCCAGATATAGTCACTAGCATAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
*
81749430 TTCGGGACTTAGCCCGGATATAG-CACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
81749469 TTCGG
1 TTCGG
81749474 ATCTTAGTCC
Statistics
Matches: 146, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 29 0.20
40 116 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
Found at i:81749386 original size:80 final size:79
Alignment explanation
Indices: 81749271--81749485 Score: 315
Period size: 80 Copynumber: 2.7 Consensus size: 79
81749261 CCCAAGTATG
* * *
81749271 TTCGGGATTTAG-CCGGATATAGCAACTCGCCCAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 TTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
81749335 ACTAGCATAAATGCC
65 ACTAGCATAAATGCC
** * *
81749350 TTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTC
1 TTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
81749415 ACTAGCATAAATGCC
65 ACTAGCATAAATGCC
* * *
81749430 TTCGGGACTTAGCCCGGATATAGCACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 TTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
81749486 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 37 0.31
80 82 0.68
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
TTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCA
CTAGCATAAATGCC
Found at i:81766113 original size:79 final size:78
Alignment explanation
Indices: 81765982--81766186 Score: 311
Period size: 79 Copynumber: 2.6 Consensus size: 78
81765972 AACCCAAGTA
* *
81765982 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTC-GGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
81766047 AATTCGCACAAATG
65 AACTCGCACAAATG
*
81766061 CCTTCGGACTTAGCCGGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGACTTAGCC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
81766126 AACTCGCACAAATG
65 AACTCGCACAAATG
* * *
81766140 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGTCTTCGG
1 CCTTCG-GACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGG
81766187 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
78 9 0.08
79 71 0.62
80 33 0.29
81 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (78 bp):
CCTTCGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTCGCACAAATG
Found at i:81766193 original size:40 final size:40
Alignment explanation
Indices: 81765982--81766186 Score: 315
Period size: 40 Copynumber: 5.2 Consensus size: 40
81765972 AACCCAAGTA
* *
81765982 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81766021 CCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81766061 CCTTC-GGACTTAGCCGGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81766100 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81766140 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81766180 TCTTCGG
1 CCTTCGG
81766187 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 49 0.32
40 102 0.68
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81768573 original size:110 final size:110
Alignment explanation
Indices: 81768374--81768593 Score: 350
Period size: 110 Copynumber: 2.0 Consensus size: 110
81768364 TTGATTGTTC
* *
81768374 ACCAAATGGATGTTAAAACTGCATTTTTAAATGATGAATTGGAAGAGGAACTGTACATGGAACAA
1 ACCAAATGGATGTTAAAACTACATTTTTAAATGACGAATTGGAAGAGGAACTGTACATGGAACAA
* *
81768439 CTAAAAGGATTTGTTGTTCCAGGACAAGAGCATCAGGTATGTAAG
66 CCAAAAGGATTTGTTGTTCCAGGACAAGAGCATAAGGTATGTAAG
*
81768484 ACCAAATGGATGTTAAAACTACATTTTTAAATGACGAATTGGAAGAGGAAGTGTACATGGAACAA
1 ACCAAATGGATGTTAAAACTACATTTTTAAATGACGAATTGGAAGAGGAACTGTACATGGAACAA
* ** **
81768549 CCAGAATTATTTGTTGTTTTAGGACAAGAGCATAAGGTATGTAAG
66 CCAAAAGGATTTGTTGTTCCAGGACAAGAGCATAAGGTATGTAAG
81768594 CTTGTTAAAT
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
110 100 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (110 bp):
ACCAAATGGATGTTAAAACTACATTTTTAAATGACGAATTGGAAGAGGAACTGTACATGGAACAA
CCAAAAGGATTTGTTGTTCCAGGACAAGAGCATAAGGTATGTAAG
Found at i:81770406 original size:20 final size:20
Alignment explanation
Indices: 81770372--81770413 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
81770362 AACAATTCAA
** *
81770372 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
81770392 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
81770412 AT
1 AT
81770414 GTGTCTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:81771060 original size:36 final size:36
Alignment explanation
Indices: 81771013--81771084 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
81771003 CATAAAAGGA
81771013 ACTTTCCTTTAGAAAATTTTTATATTTTAGTATTTT
1 ACTTTCCTTTAGAAAATTTTTATATTTTAGTATTTT
81771049 ACTTTCCTTTAGAAAATTTTTATATTTTAGTATTTT
1 ACTTTCCTTTAGAAAATTTTTATATTTTAGTATTTT
81771085 TTACTTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.58
Consensus pattern (36 bp):
ACTTTCCTTTAGAAAATTTTTATATTTTAGTATTTT
Found at i:81774813 original size:6 final size:6
Alignment explanation
Indices: 81774802--81774826 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
81774792 GTTAGGCGGA
81774802 GTGGAG GTGGAG GTGGAG GTGGAG G
1 GTGGAG GTGGAG GTGGAG GTGGAG G
81774827 ACGGGTGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.68, T:0.16
Consensus pattern (6 bp):
GTGGAG
Found at i:81777232 original size:6 final size:6
Alignment explanation
Indices: 81777223--81777247 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
81777213 CCATTCTCTT
81777223 TCTAAA TCTAAA TCTAAA TCTAAA T
1 TCTAAA TCTAAA TCTAAA TCTAAA T
81777248 TTCATTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (6 bp):
TCTAAA
Found at i:81780203 original size:12 final size:12
Alignment explanation
Indices: 81780186--81780212 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
81780176 TTCATTTGAC
81780186 TCAACATGCAAT
1 TCAACATGCAAT
81780198 TCAACATGCAAT
1 TCAACATGCAAT
81780210 TCA
1 TCA
81780213 TTTCTAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (12 bp):
TCAACATGCAAT
Found at i:81783379 original size:47 final size:47
Alignment explanation
Indices: 81783301--81783945 Score: 1020
Period size: 47 Copynumber: 13.6 Consensus size: 47
81783291 CCCTTCGGGA
* * * * * *
81783301 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783348 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783395 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81783442 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783489 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81783536 CTTATCACATATATATATACACTTTCACACTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783587 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81783634 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81783728 CTTATCACATATATATACACTTTCACACTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783824 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783920 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
81783946 CACAATTATC
Statistics
Matches: 556, Mismatches: 34, Indels: 16
0.92 0.06 0.03
Matches are distributed among these distances:
47 423 0.76
49 89 0.16
51 44 0.08
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81783624 original size:192 final size:190
Alignment explanation
Indices: 81783301--81783938 Score: 1082
Period size: 192 Copynumber: 3.3 Consensus size: 190
81783291 CCCTTCGGGA
* * * * * * * *
81783301 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * *
81783364 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
81783429 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
81783489 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
81783554 ACACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
81783619 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
81783681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
81783746 ACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
81783811 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
81783873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
81783938 A
66 A
81783939 TTCACATCAC
Statistics
Matches: 428, Mismatches: 16, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
188 47 0.11
190 96 0.22
192 285 0.67
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:81783731 original size:239 final size:235
Alignment explanation
Indices: 81783301--81783945 Score: 1040
Period size: 239 Copynumber: 2.7 Consensus size: 235
81783291 CCCTTCGGGA
* * * * *
81783301 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACAT-CATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
81783366 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
81783431 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
130 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
81783496 C-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
195 CAATATATACACTTTCACACTCATCACATCGGCCATTAGGC
81783536 CTTATCACATATATATATACACTTTCACACTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACA-TCATCACATTGGCCATTCGGCCTTATCACATATAT
81783601 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
61 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
81783666 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
126 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
81783731 ATCACATATATATACACTTTCACACTCATCACATTGGCCATTCGGC
191 ATCACA-ATATATACACTTTCACACTCATCACATCGGCCATTAGGC
* *
81783777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACA-TCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
81783842 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
81783907 TCGGCCATTAGGCCTTATCACATATATATACATTCACAT
128 TCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
81783946 CACAATTATC
Statistics
Matches: 383, Mismatches: 18, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
235 8 0.02
237 44 0.11
239 286 0.75
240 1 0.00
241 44 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (235 bp):
CTTATCACATATATACACTTTCACATCATCACATTGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
AATATATACACTTTCACACTCATCACATCGGCCATTAGGC
Found at i:81797070 original size:16 final size:17
Alignment explanation
Indices: 81797034--81797071 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
81797024 ATTTAAAAGG
81797034 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
81797051 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
81797068 AAAA
1 AAAA
81797072 TTTGATGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:81804085 original size:15 final size:13
Alignment explanation
Indices: 81804055--81804087 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
81804045 CTCGGCAGGG
*
81804055 ACACGCCCGTGGC
1 ACACACCCGTGGC
81804068 ACACACCCGTGGC
1 ACACACCCGTGGC
81804081 ACACACC
1 ACACACC
81804088 TGTGTTCGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.48, G:0.21, T:0.06
Consensus pattern (13 bp):
ACACACCCGTGGC
Found at i:81804202 original size:21 final size:20
Alignment explanation
Indices: 81804178--81804216 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81804168 CCGTGTTGAT
81804178 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
*
81804199 TTCGTTTTTGGCCCATTT
1 TTCGTCTTTGGCCCATTT
81804217 CTCGTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:81804616 original size:44 final size:44
Alignment explanation
Indices: 81804567--81804661 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
81804557 GCCATTTTTG
*
81804567 GCTTGCACCCTCTCGAGCTTGCATTTAGACCGTCCGCC-TCTTCA
1 GCTTGCACCCACTCGAGCTTGCATTTAGACCGTCCGCCAT-TTCA
* * *
81804611 GCTTGCACCCACTCGGGCTTGCATTTAGACTGTCCGCCATTTTA
1 GCTTGCACCCACTCGAGCTTGCATTTAGACCGTCCGCCATTTCA
81804655 GCTTGCA
1 GCTTGCA
81804662 ATTAGACAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 45 0.98
45 1 0.02
ACGTcount: A:0.15, C:0.35, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTTGCACCCACTCGAGCTTGCATTTAGACCGTCCGCCATTTCA
Found at i:81804695 original size:16 final size:16
Alignment explanation
Indices: 81804655--81804698 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
81804645 CGCCATTTTA
* *
81804655 GCTTGCAATTAGACAG
1 GCTTGCACTTTGACAG
**
81804671 GCTCACACTTTGACAG
1 GCTTGCACTTTGACAG
81804687 GCTTGCACTTTG
1 GCTTGCACTTTG
81804699 CTTATTGTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (16 bp):
GCTTGCACTTTGACAG
Found at i:81807696 original size:39 final size:39
Alignment explanation
Indices: 81807642--81807757 Score: 205
Period size: 39 Copynumber: 3.0 Consensus size: 39
81807632 TTCAGTGATG
*
81807642 TATATCCGGACTTAGGGTCCGCAGGTTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
81807681 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
81807720 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
81807758 ATATGTTCGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:81807781 original size:39 final size:39
Alignment explanation
Indices: 81807642--81807794 Score: 155
Period size: 39 Copynumber: 3.9 Consensus size: 39
81807632 TTCAGTGATG
** * * *
81807642 TATATCCGGACTTAGGGTCCGCAGGTTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
** * *
81807681 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
*
81807720 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* * * * *
81807759 TATGTTCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATATCCGGACTTAAAGT-CCGCAGGCTACGTGCTGG
81807795 TATTATACCG
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 5 0.05
39 98 0.95
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
Found at i:81807781 original size:78 final size:78
Alignment explanation
Indices: 81807642--81807785 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
81807632 TTCAGTGATG
* * * * **
81807642 TATATCCGGACTTAGGGTCCGCAGGTTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
81807707 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* * *
81807720 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTTCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
81807784 CT
65 CT
81807786 TCGAGCTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 4 0.07
78 52 0.93
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTGCTGGAAT
Found at i:81807794 original size:78 final size:78
Alignment explanation
Indices: 81807642--81807805 Score: 190
Period size: 78 Copynumber: 2.1 Consensus size: 78
81807632 TTCAGTGATG
* * * * **
81807642 TATATCCGGACTTAGGGTCCGCAGGTTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
81807707 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
81807720 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTTCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
*
81807784 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
81807798 TATA-CCGG
1 TATATCCGG
81807806 GTTTAAATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
77 9 0.12
78 64 0.88
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTGGAAT
Found at i:81814316 original size:39 final size:39
Alignment explanation
Indices: 81814262--81814418 Score: 192
Period size: 39 Copynumber: 4.0 Consensus size: 39
81814252 TTCAGTGATG
* *
81814262 TATATCCGGACTTAGGGTCTGCAGGTTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
81814301 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
81814340 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * **
81814379 TATGTCCGGGC-TAAAGTCCCGCAGGCT-TGTGCTGGTAAT
1 TATATCCGGACTTAGGGT-CCGCAGGCTATGTGCTGG-AAT
81814418 T
1 T
81814419 GGTTTCAAGT
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 12 0.12
39 92 0.88
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:81818272 original size:22 final size:24
Alignment explanation
Indices: 81818227--81818272 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
81818217 TAATCTTTAA
81818227 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
81818251 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
81818273 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:81831616 original size:31 final size:31
Alignment explanation
Indices: 81831540--81831617 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
81831530 ACTACAAAAA
*
81831540 TAGTCACTTTTATTTGTCTCAGATTACATTT
1 TAGTCACTTTTGTTTGTCTCAGATTACATTT
*
81831571 TAGTCACTTTTGTTTGTCTCATATTACATTT
1 TAGTCACTTTTGTTTGTCTCAGATTACATTT
*
81831602 TAGTCACTTATGTTTG
1 TAGTCACTTTTGTTTG
81831618 AAATGTTACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.53
Consensus pattern (31 bp):
TAGTCACTTTTGTTTGTCTCAGATTACATTT
Found at i:81840613 original size:3 final size:3
Alignment explanation
Indices: 81840593--81840650 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
81840583 ATACTGCTAT
* *
81840593 TTC TTT TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
81840641 TTC TT- TTC TT
1 TTC TTC TTC TT
81840651 TTTTGGTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:81840967 original size:25 final size:25
Alignment explanation
Indices: 81840933--81840981 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
81840923 ATCTTACTAC
81840933 TAAACCCAATAAATTCAAATCCATA
1 TAAACCCAATAAATTCAAATCCATA
81840958 TAAACCCAATAAATTCAAATCCAT
1 TAAACCCAATAAATTCAAATCCAT
81840982 TCAACTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (25 bp):
TAAACCCAATAAATTCAAATCCATA
Found at i:81845247 original size:39 final size:38
Alignment explanation
Indices: 81845160--81845247 Score: 104
Period size: 39 Copynumber: 2.3 Consensus size: 38
81845150 GTATCTATTC
* * * * *
81845160 AAATAATTATAAAGTGTAAAATTAAATTATTACATTAT
1 AAATAATTAAAAAGTATAAAATTAAATAATTACAATAA
*
81845198 AAATGGATTAAAAAGTATAAAATTAAATAATTACAATAA
1 AAAT-AATTAAAAAGTATAAAATTAAATAATTACAATAA
81845237 AAATAAATTAA
1 AAAT-AATTAA
81845248 GAATTGAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
38 4 0.10
39 37 0.90
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (38 bp):
AAATAATTAAAAAGTATAAAATTAAATAATTACAATAA
Found at i:81845766 original size:23 final size:24
Alignment explanation
Indices: 81845740--81845799 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
81845730 TTTAAAAATG
81845740 ATAAAATTATAATTTT-ATATATA
1 ATAAAATTATAATTTTGATATATA
* *
81845763 ATAAATTTAT-ATTTTGATCTATA
1 ATAAAATTATAATTTTGATATATA
81845786 A-AAATATTATAATT
1 ATAAA-ATTATAATT
81845800 AATTTCAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 8 0.26
23 20 0.65
24 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
ATAAAATTATAATTTTGATATATA
Found at i:81846342 original size:18 final size:19
Alignment explanation
Indices: 81846307--81846346 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
81846297 ACGTAGTTCT
* *
81846307 AAATGAAAATTTTTAAGAA
1 AAATGAAAATGTTAAAGAA
81846326 AAAT-AAAATGTTAAAGAA
1 AAATGAAAATGTTAAAGAA
81846344 AAA
1 AAA
81846347 AGCTAAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (19 bp):
AAATGAAAATGTTAAAGAA
Found at i:81860050 original size:42 final size:42
Alignment explanation
Indices: 81860003--81860084 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
81859993 GCCAATGTGT
**
81860003 ATATATAGTCGAAGCTATCTCAATCTCACACACTAAGTGCAA
1 ATATATAACCGAAGCTATCTCAATCTCACACACTAAGTGCAA
** * *
81860045 ATATATAACCGAAGCTATCTTGATTTCGCACACTAAGTGC
1 ATATATAACCGAAGCTATCTCAATCTCACACACTAAGTGC
81860085 CCACAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.28
Consensus pattern (42 bp):
ATATATAACCGAAGCTATCTCAATCTCACACACTAAGTGCAA
Found at i:81866196 original size:26 final size:26
Alignment explanation
Indices: 81866167--81866219 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81866157 TCAAACATGC
81866167 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
81866193 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
81866219 A
1 A
81866220 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:81867737 original size:26 final size:26
Alignment explanation
Indices: 81867706--81867813 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81867696 TGAAATGCCC
* *
81867706 ATCATGGAACATTTAACTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81867732 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81867758 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81867784 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81867810 ATCA
1 ATCA
81867814 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81868707 original size:60 final size:61
Alignment explanation
Indices: 81868640--81868775 Score: 211
Period size: 61 Copynumber: 2.2 Consensus size: 61
81868630 TTATACTAAA
* *
81868640 TTATTTAAATAAACTTTTATAATA-TTCTTTTACCTAAATAAACCCTTAAGCTATAATGGC
1 TTATTTAAATAAACCTTTATAATATTTCTTTTACCTAAATAAACCCTTAAGCTATAATGAC
* * * *
81868700 TTATTTAAATAAGCCTTTATAGTATTTTTTTTACCTAAATAAACCCTTGAGCTATAATGAC
1 TTATTTAAATAAACCTTTATAATATTTCTTTTACCTAAATAAACCCTTAAGCTATAATGAC
81868761 TTATTTAAATAAACC
1 TTATTTAAATAAACC
81868776 CTTAAATCTA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
60 21 0.31
61 47 0.69
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.42
Consensus pattern (61 bp):
TTATTTAAATAAACCTTTATAATATTTCTTTTACCTAAATAAACCCTTAAGCTATAATGAC
Found at i:81868711 original size:31 final size:31
Alignment explanation
Indices: 81868674--81868780 Score: 101
Period size: 31 Copynumber: 3.5 Consensus size: 31
81868664 TTCTTTTACC
*
81868674 TAAATAAACCCTTAAGCTATAATGGCTTATT
1 TAAATAAACCCTTAAGCTATAATGACTTATT
* * * *** **
81868705 TAAATAAGCCTTTATAG-TAT-TTTTTTTACC
1 TAAATAAACCCTTA-AGCTATAATGACTTATT
*
81868735 TAAATAAACCCTTGAGCTATAATGACTTATT
1 TAAATAAACCCTTAAGCTATAATGACTTATT
81868766 TAAATAAACCCTTAA
1 TAAATAAACCCTTAA
81868781 ATCTAGTTGA
Statistics
Matches: 55, Mismatches: 18, Indels: 6
0.70 0.23 0.08
Matches are distributed among these distances:
29 2 0.04
30 18 0.33
31 33 0.60
32 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.38
Consensus pattern (31 bp):
TAAATAAACCCTTAAGCTATAATGACTTATT
Found at i:81885075 original size:12 final size:12
Alignment explanation
Indices: 81885060--81885098 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
81885050 TGCAACCGAA
*
81885060 GGTACAATAGGT
1 GGTACAATAGGG
* *
81885072 GGTATAACAGGG
1 GGTACAATAGGG
81885084 GGTACAATAGGG
1 GGTACAATAGGG
81885096 GGT
1 GGT
81885099 GGAGGTCGTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.41, T:0.21
Consensus pattern (12 bp):
GGTACAATAGGG
Found at i:81896396 original size:19 final size:19
Alignment explanation
Indices: 81896372--81896411 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
81896362 CAATTTGAAG
81896372 ATGAAATGCTATATAAAGC
1 ATGAAATGCTATATAAAGC
81896391 ATGAAATGCTATATAAAGC
1 ATGAAATGCTATATAAAGC
81896410 AT
1 AT
81896412 AGATGTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.28
Consensus pattern (19 bp):
ATGAAATGCTATATAAAGC
Found at i:81903417 original size:42 final size:42
Alignment explanation
Indices: 81903370--81903475 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
81903360 TGAGTTATCA
*
81903370 TGTAAGACCATATCTGGGATATAGAGTTGATATGAG-ATTTCG
1 TGTAAGACCATATCTGGGATATAGAGTTGAAATGAGAATTT-G
** * *
81903412 TGTAAGACCACGTCTGGGACATAGCGTTGAAATGAGAATTTG
1 TGTAAGACCATATCTGGGATATAGAGTTGAAATGAGAATTTG
*
81903454 TATAAGACCATATCTGGGATAT
1 TGTAAGACCATATCTGGGATAT
81903476 GGCATCGATG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 50 0.93
43 4 0.07
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATAGAGTTGAAATGAGAATTTG
Found at i:81903490 original size:42 final size:43
Alignment explanation
Indices: 81903322--81903490 Score: 130
Period size: 42 Copynumber: 3.9 Consensus size: 43
81903312 TGAGATCCCA
* * *
81903322 TATAAGACCATATCTGGGATATGGCATTGGCATCA-GTATGAGTTATCA
1 TATAAGACCATATCTGGGATATAGCATT-G-AT-ATG-A-GAATT-TCG
*
81903370 TGTAAGACCATATCTGGGATATAG-AGTTGATATGAG-ATTTCG
1 TATAAGACCATATCTGGGATATAGCA-TTGATATGAGAATTTCG
* ** * * *
81903412 TGTAAGACCACGTCTGGGACATAGCGTTGAAATGAGAATTT-G
1 TATAAGACCATATCTGGGATATAGCATTGATATGAGAATTTCG
* * *
81903454 TATAAGACCATATCTGGGATATGGCATCGATGTGAGA
1 TATAAGACCATATCTGGGATATAGCATTGATATGAGA
81903491 TCCCATGTAA
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
42 61 0.62
43 6 0.06
44 1 0.01
45 2 0.02
46 3 0.03
47 2 0.02
48 24 0.24
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (43 bp):
TATAAGACCATATCTGGGATATAGCATTGATATGAGAATTTCG
Found at i:81912139 original size:13 final size:13
Alignment explanation
Indices: 81912121--81912150 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
81912111 CCTTGCCAAA
81912121 GTGACACGGCCGT
1 GTGACACGGCCGT
*
81912134 GTGACACGTCCGT
1 GTGACACGGCCGT
81912147 GTGA
1 GTGA
81912151 GGAAGTCCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.27, G:0.37, T:0.20
Consensus pattern (13 bp):
GTGACACGGCCGT
Found at i:81920709 original size:21 final size:21
Alignment explanation
Indices: 81920683--81920725 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
81920673 TAATCTGACA
81920683 AATTATGACAAATGTACTCTT
1 AATTATGACAAATGTACTCTT
81920704 AATTATGACAAATGTACTCTT
1 AATTATGACAAATGTACTCTT
81920725 A
1 A
81920726 GACAGTGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (21 bp):
AATTATGACAAATGTACTCTT
Found at i:81922871 original size:23 final size:23
Alignment explanation
Indices: 81922838--81922899 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
81922828 GACACGGGTG
81922838 TGCACACGGGCGTGTGCTTTGCC
1 TGCACACGGGCGTGTGCTTTGCC
* *
81922861 TGCACATGGGCATGTGCTTTGCC
1 TGCACACGGGCGTGTGCTTTGCC
* *
81922884 TTCACACGGGTGTGTG
1 TGCACACGGGCGTGTG
81922900 AGGCATAACC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.11, C:0.26, G:0.34, T:0.29
Consensus pattern (23 bp):
TGCACACGGGCGTGTGCTTTGCC
Found at i:81926953 original size:25 final size:25
Alignment explanation
Indices: 81926925--81926980 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
81926915 TAGCTATGTT
* *
81926925 CCGATCCATATCTTGTGTGAGCATA
1 CCGATCCATAGCTTGTGAGAGCATA
**
81926950 CCGATTTATAGCTTGTGAGAGCATA
1 CCGATCCATAGCTTGTGAGAGCATA
81926975 CCGATC
1 CCGATC
81926981 TACAGCTCGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
CCGATCCATAGCTTGTGAGAGCATA
Found at i:81926987 original size:25 final size:25
Alignment explanation
Indices: 81926936--81926987 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
81926926 CGATCCATAT
* * *
81926936 CTTGTGTGAGCATACCGATTTATAG
1 CTTGTGAGAGCATACCGATCTACAG
81926961 CTTGTGAGAGCATACCGATCTACAG
1 CTTGTGAGAGCATACCGATCTACAG
81926986 CT
1 CT
81926988 CGAGTGATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTGTGAGAGCATACCGATCTACAG
Found at i:81929842 original size:24 final size:25
Alignment explanation
Indices: 81929802--81929854 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
81929792 GCATAATTGA
81929802 AATTTTGAATTAATAA-T-AAGGTT
1 AATTTTGAATTAATAATTAAAGGTT
* *
81929825 AATTTTGTCATTAGTAATTAAAGGTT
1 AATTTTG-AATTAATAATTAAAGGTT
81929851 AATT
1 AATT
81929855 AAATAAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 7 0.28
24 7 0.28
25 1 0.04
26 10 0.40
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (25 bp):
AATTTTGAATTAATAATTAAAGGTT
Found at i:81930792 original size:29 final size:28
Alignment explanation
Indices: 81930745--81930799 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
81930735 GAGTTATACC
* *
81930745 GATTTGGATTTGGGCCATGCATATCAGCT
1 GATTTGGATTCGGGACATG-ATATCAGCT
*
81930774 GATTTGGCTTCGGGACATGATATCAG
1 GATTTGGATTCGGGACATGATATCAG
81930800 TACTTCGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (28 bp):
GATTTGGATTCGGGACATGATATCAGCT
Found at i:81931319 original size:23 final size:23
Alignment explanation
Indices: 81931299--81931342 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
81931289 TGAATATAGG
* *
81931299 TTGATAATGATTTTGGTTATAAC
1 TTGATAATGAATTTGGCTATAAC
*
81931322 TTGTTAATGAATTTGGCTATA
1 TTGATAATGAATTTGGCTATA
81931343 TGAATTGGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.18, T:0.48
Consensus pattern (23 bp):
TTGATAATGAATTTGGCTATAAC
Found at i:81944854 original size:93 final size:93
Alignment explanation
Indices: 81944695--81944866 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81944685 CGCCCATAAG
* *
81944695 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATGAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
81944760 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * ** *
81944788 CGAACTCGGACTCAACTCGACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
81944853 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81944867 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81944863 original size:46 final size:46
Alignment explanation
Indices: 81944688--81944863 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
81944678 TGTAACCCGC
* * *
81944688 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * * *
81944734 CCATGAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
* * *
81944784 -C-TCA-CGAACTCGGACTCAACTCGACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
*
81944827 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81944864 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 2 0.02
49 2 0.02
50 6 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:81947276 original size:15 final size:15
Alignment explanation
Indices: 81947247--81947296 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
81947237 CAAAGATAAC
*
81947247 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
81947261 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
81947276 AAGAGATGCAGGATA
1 AAGAAATCCAGAATA
81947291 AAGAAA
1 AAGAAA
81947297 CCAAGATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.60, C:0.10, G:0.20, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:81950401 original size:93 final size:93
Alignment explanation
Indices: 81950242--81950413 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81950232 CGCCCATAAG
* *
81950242 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATGAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
81950307 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * ** *
81950335 CGAACTCGGACTCAACTCGACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
81950400 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81950414 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81950410 original size:46 final size:46
Alignment explanation
Indices: 81950235--81950410 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
81950225 TGTAACCCGC
* * *
81950235 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * * *
81950281 CCATGAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACAT
* * *
81950331 -C-TCA-CGAACTCGGACTCAACTCGACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
*
81950374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81950411 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 2 0.02
49 2 0.02
50 6 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:81955890 original size:53 final size:53
Alignment explanation
Indices: 81955711--81955917 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 53
81955701 ATTAGGGTTT
* * * * * * * *
81955711 AAGGATACCAAGTAAAACCATGCCAAGGCATGGGATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * *
81955765 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATAAATTACGATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-C-ATAAGGC
* * *
81955820 GAA-GATCCCATGTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGC
* *
81955873 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
81955918 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
52 2 0.02
53 44 0.36
54 36 0.30
55 37 0.31
56 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:81958566 original size:27 final size:27
Alignment explanation
Indices: 81958536--81958713 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
81958526 ATATTGAGCC
* *
81958536 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
81958563 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
81958590 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
81958618 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
81958645 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
81958672 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
81958699 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
81958714 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 102 0.80
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81958675 original size:82 final size:81
Alignment explanation
Indices: 81958557--81958712 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
81958547 TGCTATATAA
* *
81958557 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81958622 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
81958639 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
81958703 CCCTTAGTGC
65 CACTTAGTGC
81958713 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81963101 original size:17 final size:17
Alignment explanation
Indices: 81963081--81963148 Score: 75
Period size: 17 Copynumber: 4.0 Consensus size: 17
81963071 CAGCTCATGA
81963081 AAAATAACAGTTCATAC
1 AAAATAACAGTTCATAC
*
81963098 AAAATATCAGTTCATAC
1 AAAATAACAGTTCATAC
** * *
81963115 CGAATAAAAATTCATGA-
1 AAAATAACAGTTCAT-AC
81963132 AAAATAACAGTTCATAC
1 AAAATAACAGTTCATAC
81963149 TCCTCATAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
16 1 0.03
17 37 0.95
18 1 0.03
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.25
Consensus pattern (17 bp):
AAAATAACAGTTCATAC
Found at i:81967305 original size:27 final size:28
Alignment explanation
Indices: 81967275--81967329 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
81967265 AAACCTATAA
*
81967275 ACAC-ATATATTATATATAATAAAACCC
1 ACACAATATATTATATATAACAAAACCC
81967302 ACACATATATATTATATATAACAAAACC
1 ACACA-ATATATTATATATAACAAAACC
81967330 ATCCCTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
29 21 0.84
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (28 bp):
ACACAATATATTATATATAACAAAACCC
Found at i:81967408 original size:34 final size:33
Alignment explanation
Indices: 81967370--81967446 Score: 102
Period size: 32 Copynumber: 2.3 Consensus size: 33
81967360 ACACACGCAG
81967370 ATATATTATACATATAACACCCATGCACCCAAAT
1 ATATATTATA-ATATAACACCCATGCACCCAAAT
* ** *
81967404 ATATATTAT-ATATAATACCCATGCACGTAGAT
1 ATATATTATAATATAACACCCATGCACCCAAAT
81967436 ATATATTATAA
1 ATATATTATAA
81967447 ACCCCACTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 28 0.74
33 1 0.03
34 9 0.24
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.32
Consensus pattern (33 bp):
ATATATTATAATATAACACCCATGCACCCAAAT
Found at i:81967462 original size:22 final size:24
Alignment explanation
Indices: 81967434--81967491 Score: 75
Period size: 22 Copynumber: 2.5 Consensus size: 24
81967424 ATGCACGTAG
** *
81967434 ATATATATTATAA-ACCCCACT-C
1 ATATATATTATAACACCAAAATCC
81967456 ATATATATTATAACACCAAAATCC
1 ATATATATTATAACACCAAAATCC
81967480 ATATATATTATA
1 ATATATATTATA
81967492 TATAAATAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 13 0.42
23 5 0.16
24 13 0.42
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (24 bp):
ATATATATTATAACACCAAAATCC
Found at i:81973130 original size:26 final size:26
Alignment explanation
Indices: 81973101--81973153 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81973091 TATAATGTAT
81973101 TTAATGTTTAAAAGTACTTATTAGAG
1 TTAATGTTTAAAAGTACTTATTAGAG
81973127 TTAATGTTTAAAAGTACTTATTAGAG
1 TTAATGTTTAAAAGTACTTATTAGAG
81973153 T
1 T
81973154 CATACTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.43
Consensus pattern (26 bp):
TTAATGTTTAAAAGTACTTATTAGAG
Found at i:81974500 original size:29 final size:29
Alignment explanation
Indices: 81974434--81974500 Score: 66
Period size: 29 Copynumber: 2.3 Consensus size: 29
81974424 TAAAATGTCC
* *
81974434 AAATAGGGATTAAATTGTGAAATGTGCAA
1 AAATATGGATTAAATTGTGAAATATGCAA
*
81974463 AATTCATGG-TTAAATTGTGAAATAAATG-AA
1 AAAT-ATGGATTAAATTGTGAAAT--ATGCAA
81974493 AAATATGG
1 AAATATGG
81974501 GCTGCTAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
29 21 0.68
30 8 0.26
31 2 0.06
ACGTcount: A:0.46, C:0.03, G:0.21, T:0.30
Consensus pattern (29 bp):
AAATATGGATTAAATTGTGAAATATGCAA
Found at i:81975066 original size:41 final size:41
Alignment explanation
Indices: 81975021--81975118 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
81975011 GGATTCTCGC
81975021 CAGCTTGTGTGAGTAGCA-CTGTGTAGCTTCGTCATGACCGT
1 CAGCTTGTGTGAGTAGCACCT-TGTAGCTTCGTCATGACCGT
* * * *
81975062 CAGCTTGTGTGAGCAACACCTTGTAGCTTTGTCATGACCTT
1 CAGCTTGTGTGAGTAGCACCTTGTAGCTTCGTCATGACCGT
*
81975103 TAGCTTGTGTGAGTAG
1 CAGCTTGTGTGAGTAG
81975119 ACCCATTGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
41 47 0.96
42 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (41 bp):
CAGCTTGTGTGAGTAGCACCTTGTAGCTTCGTCATGACCGT
Found at i:81981966 original size:30 final size:31
Alignment explanation
Indices: 81981930--81981987 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
81981920 TTTACAAGCC
*
81981930 TAGGGGCAAAAGTGTAATTTTG-AAAAAGTT
1 TAGGGGCAAAAATGTAATTTTGTAAAAAGTT
81981960 TAGGGGCAAAAATGTAATTTTGTAAAAA
1 TAGGGGCAAAAATGTAATTTTGTAAAAA
81981988 ATGATTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.43, C:0.03, G:0.24, T:0.29
Consensus pattern (31 bp):
TAGGGGCAAAAATGTAATTTTGTAAAAAGTT
Found at i:81995888 original size:6 final size:6
Alignment explanation
Indices: 81995868--81995976 Score: 89
Period size: 6 Copynumber: 17.8 Consensus size: 6
81995858 AAGAAACATT
* *
81995868 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
81995918 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGG
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
*
81995966 ATCAGT ATCAG
1 ATCAGA ATCAG
81995977 GTAACAGAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
5 5 0.06
6 69 0.83
7 7 0.08
8 2 0.02
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81995924 original size:19 final size:19
Alignment explanation
Indices: 81995900--81995957 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
81995890 GAATCAGAAT
81995900 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
81995919 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
81995931 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
81995950 CAGAATCA
1 CAGAATCA
81995958 AAATCAGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:81995925 original size:31 final size:31
Alignment explanation
Indices: 81995888--81995991 Score: 190
Period size: 31 Copynumber: 3.4 Consensus size: 31
81995878 GAATCAAAAT
*
81995888 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
81995919 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
81995950 CAGAATCAAAATCAGGATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
81995981 CAGAATCAAAA
1 CAGAATCAAAA
81995992 ATCATAATGT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.18
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:81996199 original size:26 final size:27
Alignment explanation
Indices: 81996136--81996209 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
81996126 GCTCAGTTAT
* *
81996136 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
81996163 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
81996189 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
81996210 TTAACAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81996396 original size:22 final size:22
Alignment explanation
Indices: 81996368--81996432 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
81996358 GCAAATACGT
*
81996368 TTGGCACACAGCCATAGTCAGG
1 TTGGCACAAAGCCATAGTCAGG
*
81996390 TTGGCACAGAGCCATATGT-AGG
1 TTGGCACAAAGCCATA-GTCAGG
* *
81996412 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAGTCAG
81996433 AAGGCTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.92
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAGG
Found at i:81996878 original size:27 final size:27
Alignment explanation
Indices: 81996821--81996878 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
81996811 ACTTGGCCAT
* **
81996821 AAGGGCAAAATAGTCATTTAACACCTT
1 AAGGGCAAAATAGTAATTTAACACCAC
* * *
81996848 AAGGGCAAAATGGTAATTTTACCCCAC
1 AAGGGCAAAATAGTAATTTAACACCAC
81996875 AAGG
1 AAGG
81996879 TATCTTGGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (27 bp):
AAGGGCAAAATAGTAATTTAACACCAC
Found at i:81996916 original size:27 final size:27
Alignment explanation
Indices: 81996858--81997294 Score: 443
Period size: 27 Copynumber: 16.3 Consensus size: 27
81996848 AAGGGCAAAA
* * * *
81996858 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
81996884 TGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
81996911 TAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
81996938 CGATAATTCTACCCTACAGGGGTATTA
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
81996965 CGATAATTCTACCCTACAGGGATATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
81996992 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
81997019 CGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
81997046 CGATAATTCTACCCTACA-GGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
81997072 CGGTAATT-TACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
81997098 CGGTAATTATCCCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
*
81997125 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
81997152 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
81997179 CGATATTTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
81997206 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * ** *
81997233 CGATAATTTTA-CAAATTAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
* ** *
81997260 TGGTAATTTTA-CAAACCAAGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
81997287 TGGTAATT
1 TGGTAATT
81997295 TTATTGATCG
Statistics
Matches: 371, Mismatches: 36, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
25 9 0.02
26 47 0.13
27 315 0.85
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:81996946 original size:54 final size:54
Alignment explanation
Indices: 81996887--81997240 Score: 541
Period size: 54 Copynumber: 6.6 Consensus size: 54
81996877 GGTATCTTGG
* **
81996887 TAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * * *
81996941 TAATTCTACCCTACAGGGGTATTACGATAATTCTACCCTACAGGGATATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
*
81996995 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * *
81997049 TAATTCTACCCTACA-GGGTATTCCGGTAATT-TACCCTACAGGGGTATTCCGG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * *
81997101 TAATTATCCCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* *
81997155 TAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
*
81997209 TAATTCTACCCTACAGGGGTATTTCGATAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
81997241 TTACAAATTA
Statistics
Matches: 272, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
52 31 0.11
53 31 0.11
54 210 0.77
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
Found at i:81996998 original size:81 final size:81
Alignment explanation
Indices: 81996887--81997240 Score: 541
Period size: 81 Copynumber: 4.4 Consensus size: 81
81996877 GGTATCTTGG
* **
81996887 TAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
*
81996952 TACAGGGGTATTACGA
66 TACAGGGGTATTTCGA
* *
81996968 TAATTCTACCCTACAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
*
81997033 TATAGGGGTATTTCGA
66 TACAGGGGTATTTCGA
* * * * *
81997049 TAATTCTACCCTACA-GGGTATTCCGGTAATT-TACCCTACAGGGGTATTCCGGTAATTATCCCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
* *
81997112 TACAGGGGTATTCCGG
66 TACAGGGGTATTTCGA
* *
81997128 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
81997193 TACAGGGGTATTTCGA
66 TACAGGGGTATTTCGA
*
81997209 TAATTCTACCCTACAGGGGTATTTCGATAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
81997241 TTACAAATTA
Statistics
Matches: 247, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
79 57 0.23
80 28 0.11
81 162 0.66
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCC
TACAGGGGTATTTCGA
Found at i:81997283 original size:54 final size:54
Alignment explanation
Indices: 81997225--81997784 Score: 208
Period size: 54 Copynumber: 10.4 Consensus size: 54
81997215 TACCCTACAG
81997225 GGGTATTTCGATAATTTTACAAATTAG-GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTCGATAATTTTACAAA-TAGAGGGTATTTTGGTAATTTTACAAACCAA
* * *** * **
81997279 GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGATAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
* ** * *** * ** *
81997333 AGGTATTTC-AGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATCAA
1 GGGTATTTCGA-TAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
*** * * ** * *** * * * * *
81997387 GGGTAAGACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
1 GGGTATTTCGATAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
*** * ** * *** * * **
81997441 GGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGATAATTCTATCTTA-C-A
1 GGGTATTTCGATAATTTTACAAATAGAGGGTATTTTGGTAATTTTA-CAAACCAA
* * * * **
81997494 GGAGTATTT-TAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGA
1 GG-GTATTTCGA-TAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
* * * * * ****
81997549 GGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATTGG
1 GGGTATTTCGATAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
* * * * * * *
81997603 GGGTACTTT-GGTGATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATCGA
1 GGGTA-TTTCGATAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
* * * * *
81997657 GGGTATTT-AAGTAATTTTTCAAACT-GAGGGTATTTCGGTAATTTTACAAATCTA
1 GGGTATTTCGA-TAATTTTACAAA-TAGAGGGTATTTTGGTAATTTTACAAACCAA
* * * * *
81997711 GGGTATTTC-AGTAATTTTAC-AATCGACGGTATTTCGGTAATTTTATAAACC-G
1 GGGTATTTCGA-TAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
*
81997763 GGGTACTTT-GGTAATTTTACAA
1 GGGTA-TTTCGATAATTTTACAA
81997785 CTGGGGGTAT
Statistics
Matches: 404, Mismatches: 85, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
52 15 0.04
53 41 0.10
54 340 0.84
55 8 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
Found at i:81997295 original size:27 final size:27
Alignment explanation
Indices: 81997225--81997350 Score: 117
Period size: 27 Copynumber: 4.7 Consensus size: 27
81997215 TACCCTACAG
* * ** *
81997225 GGGTATTTCGATAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
81997252 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*** * *
81997279 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
81997306 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* **
81997333 AGGTATTTCAGTAATTTT
1 GGGTATTTTGGTAATTTT
81997351 GTAAATTGAG
Statistics
Matches: 81, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:81997364 original size:27 final size:27
Alignment explanation
Indices: 81997252--81997364 Score: 73
Period size: 27 Copynumber: 4.2 Consensus size: 27
81997242 TACAAATTAG
** ** *
81997252 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTCAGTAATTTTGTAAACCGA
** * ** *
81997279 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTCAGTAATTTTGTAAACCGA
** *
81997306 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCAGTAATTTTGTAAACCGA
* **
81997333 AGGTATTTCAGTAATTTTGTAAATTGA
1 GGGTATTTCAGTAATTTTGTAAACCGA
81997360 GGGTA
1 GGGTA
81997365 AAATGGTAAT
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGTAAACCGA
Found at i:81997373 original size:27 final size:27
Alignment explanation
Indices: 81997343--81997485 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
81997333 AGGTATTTCA
* *
81997343 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
81997370 GTAATTCTGTAAATCAAGGGTAAGACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
81997397 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
81997424 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
81997451 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
81997478 ATAATTCT
1 GTAATTCT
81997486 ATCTTACAGG
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:81997390 original size:81 final size:81
Alignment explanation
Indices: 81997315--81997473 Score: 194
Period size: 81 Copynumber: 2.0 Consensus size: 81
81997305 AGGGTATTTT
* ** * * * * *
81997315 GGTAATTTTGTAAACCAAAGGT-ATTTCAGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTG
1 GGTAATTCTGTAAACCAAAGGTAAAAT-AGTAATTCTATAAATCGAGGGTAAAACGATAATTCTG
81997379 TAAATCAAGGGTAAGAC
65 TAAATCAAGGGTAAGAC
* * *
81997396 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGT
1 GGTAATTCTGTAAACCAAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGT
*
81997461 AAATCGAGGGTAA
66 AAATCAAGGGTAA
81997474 AATGATAATT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
GGTAATTCTGTAAACCAAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGT
AAATCAAGGGTAAGAC
Found at i:81997527 original size:27 final size:27
Alignment explanation
Indices: 81997497--81997805 Score: 308
Period size: 27 Copynumber: 11.6 Consensus size: 27
81997487 TCTTACAGGA
*
81997497 GTATTTTAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
81997524 GTATTTTAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
81997551 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** * * *
81997578 ATATTTGGGTAATTTTATAAATTGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
81997605 GTACTTT-GGTGATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
*
81997632 GTATTTTAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
81997659 GTATTTAAGTAATTTTTCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* *
81997686 GTATTTCGGTAATTTTACAAATCTAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
81997713 GTATTTCAGTAATTTTAC-AATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
81997739 GTATTTCGGTAATTTTATAAACCG-GG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
81997765 GTACTTT-GGTAATTTTACAACT-GGGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
81997791 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
81997806 GGTAAACTAA
Statistics
Matches: 237, Mismatches: 35, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
25 4 0.02
26 55 0.23
27 173 0.73
28 5 0.02
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:82003859 original size:29 final size:29
Alignment explanation
Indices: 82003793--82003859 Score: 66
Period size: 29 Copynumber: 2.3 Consensus size: 29
82003783 TAAAATGTCC
* *
82003793 AAATAAGGATTAAATTGTGAAATGTGTAA
1 AAATATGGATTAAATTGTGAAATATGTAA
*
82003822 AATTCATGG-TTAAATTGTGAAATAAATG-AA
1 AAAT-ATGGATTAAATTGTGAAAT--ATGTAA
82003852 AAATATGG
1 AAATATGG
82003860 GCTGCTAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
29 21 0.68
30 8 0.26
31 2 0.06
ACGTcount: A:0.48, C:0.01, G:0.19, T:0.31
Consensus pattern (29 bp):
AAATATGGATTAAATTGTGAAATATGTAA
Found at i:82004667 original size:23 final size:23
Alignment explanation
Indices: 82004633--82004676 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
82004623 TGAGTTTATG
*
82004633 GTTAATTATGTGATTGAATGTAT
1 GTTAATTATGTGATTAAATGTAT
*
82004656 GTTAACTT-TGTGGTTAAATGT
1 GTTAA-TTATGTGATTAAATGT
82004677 TTTATAGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48
Consensus pattern (23 bp):
GTTAATTATGTGATTAAATGTAT
Found at i:82006121 original size:7 final size:7
Alignment explanation
Indices: 82006111--82006146 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
82006101 AACACCCTTT
82006111 ACCCGAG
1 ACCCGAG
82006118 ACCCGAG
1 ACCCGAG
82006125 ACCCGAG
1 ACCCGAG
*
82006132 ACTCGAG
1 ACCCGAG
82006139 A-CCGAG
1 ACCCGAG
82006145 AC
1 AC
82006147 TGGGACCGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.31, C:0.39, G:0.28, T:0.03
Consensus pattern (7 bp):
ACCCGAG
Found at i:82008229 original size:40 final size:40
Alignment explanation
Indices: 82008110--82008263 Score: 156
Period size: 40 Copynumber: 3.9 Consensus size: 40
82008100 TGAAACAAAT
* ** *
82008110 TTCTAGCAC-CAGCCTGCGGGAATTTAAACCCGG-TATA-A
1 TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA-ACA
* * * * *
82008148 TACTAGCTCGTAGCCTGCGGGTCTCT-AGCCCGGATAGCA
1 TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACA
82008187 TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACA
1 TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACA
* *
82008227 TTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 TTCTAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATA
82008264 CAATTCCTCA
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
38 13 0.14
39 38 0.40
40 45 0.47
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
TTCTAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACA
Found at i:82017519 original size:30 final size:30
Alignment explanation
Indices: 82017474--82017563 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
82017464 CAAAGATAAC
82017474 AAGAAAACCA-AATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
82017503 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
82017533 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
82017563 A
1 A
82017564 GATACTATGC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 10 0.20
30 39 0.76
31 2 0.04
ACGTcount: A:0.59, C:0.16, G:0.16, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:82017522 original size:15 final size:15
Alignment explanation
Indices: 82017474--82017553 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
82017464 CAAAGATAAC
*
82017474 AAGAAAACCA-AATA
1 AAGAAATCCAGAATA
82017488 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
82017503 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
82017518 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
82017533 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
82017548 AAGAAA
1 AAGAAA
82017554 CCCAAGATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.18
15 45 0.80
16 1 0.02
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:82017562 original size:15 final size:15
Alignment explanation
Indices: 82017474--82017563 Score: 87
Period size: 15 Copynumber: 6.1 Consensus size: 15
82017464 CAAAGATAAC
*
82017474 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
82017488 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
* *
82017503 GAGAAA-CCCAGAATA
1 AAGAAATCCAAG-ATA
82017518 AAGAAATCC-AGAATA
1 AAGAAATCCAAG-ATA
* *
82017533 AAGAGATCCAGGATA
1 AAGAAATCCAAGATA
*
82017548 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
82017563 A
1 A
82017564 GATACTATGC
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
14 14 0.22
15 46 0.73
16 3 0.05
ACGTcount: A:0.59, C:0.16, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:82020116 original size:39 final size:39
Alignment explanation
Indices: 82020073--82020171 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
82020063 ACATATTTCT
*
82020073 AGCACATAGCCCGCGGACCTTAAGTCCAAATATAATTCC
1 AGCACATAGCCTGCGGACCTTAAGTCCAAATATAATTCC
**
82020112 AGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCTTAAGTCCAAATATAATTCC
*
82020151 AGCACATAGCCTACGGACCTT
1 AGCACATAGCCTGCGGACCTT
82020172 TAAGCTCGGA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCTTAAGTCCAAATATAATTCC
Found at i:82026662 original size:15 final size:15
Alignment explanation
Indices: 82026614--82026677 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
82026604 ATAAAACCGA
82026614 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
82026629 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
* *
82026643 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
82026659 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
82026674 ATAA
1 ATAA
82026678 GATACTATGC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
14 4 0.10
15 32 0.82
16 3 0.08
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82043213 original size:39 final size:39
Alignment explanation
Indices: 82043158--82043244 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
82043148 GACTTAATGT
*
82043158 CTAGCAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
82043197 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
82043236 CTAGCAGGC
1 CTAGCAGGC
82043245 TAATTGCCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:82043253 original size:39 final size:39
Alignment explanation
Indices: 82043158--82043257 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
82043148 GACTTAATGT
*
82043158 CTAGCAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
*
82043197 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
*
82043236 CTAGCAGG-CTAATTGCCGGTGA
1 CTAGCAGGCCT-AGTGCCGGTGA
82043258 AATAATAAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.04
39 55 0.96
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:82048952 original size:18 final size:19
Alignment explanation
Indices: 82048912--82048952 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
82048902 CGCATGGACT
*
82048912 ACCCGTGTGGACCCACACG
1 ACCCATGTGGACCCACACG
*
82048931 -CCCATGTGG-CCCATACG
1 ACCCATGTGGACCCACACG
82048948 ACCCA
1 ACCCA
82048953 AATCAGCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.22, C:0.44, G:0.22, T:0.12
Consensus pattern (19 bp):
ACCCATGTGGACCCACACG
Found at i:82052633 original size:7 final size:7
Alignment explanation
Indices: 82052621--82052675 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
82052611 TGCTCTCTTT
82052621 TTTTTTC
1 TTTTTTC
82052628 TTTTTTC
1 TTTTTTC
*
82052635 TTGTTTC
1 TTTTTTC
*
82052642 ATTTTTC
1 TTTTTTC
82052649 TTTTTT-
1 TTTTTTC
82052655 TTCTTTTC
1 TT-TTTTC
*
82052663 TTTTCTC
1 TTTTTTC
82052670 TTTTTT
1 TTTTTT
82052676 TTTCACGAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 2 0.05
7 36 0.90
8 2 0.05
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:82053942 original size:3 final size:3
Alignment explanation
Indices: 82053934--82053959 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
82053924 CTTTGTGGGA
82053934 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
82053960 GGGACCTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:82056864 original size:12 final size:12
Alignment explanation
Indices: 82056844--82056944 Score: 77
Period size: 12 Copynumber: 8.6 Consensus size: 12
82056834 ATCAAGTGTT
82056844 CATATATATATA
1 CATATATATATA
*
82056856 CATACATATAT-
1 CATATATATATA
*
82056867 GA-ATATATATA
1 CATATATATATA
82056878 CATATATATAT-
1 CATATATATATA
* *
82056889 GA-ATGTATATA
1 CATATATATATA
82056900 CATATATGA-ATA
1 CATATAT-ATATA
* *
82056912 TATATATACATA
1 CATATATATATA
*
82056924 TATGAATATATATA
1 CAT--ATATATATA
82056938 CATATAT
1 CATATAT
82056945 GAATATACTT
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
10 14 0.20
11 5 0.07
12 40 0.57
13 1 0.01
14 10 0.14
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.40
Consensus pattern (12 bp):
CATATATATATA
Found at i:82056874 original size:20 final size:19
Alignment explanation
Indices: 82056849--82056951 Score: 129
Period size: 18 Copynumber: 5.3 Consensus size: 19
82056839 GTGTTCATAT
82056849 ATATATACATACATATATGAA
1 ATATATA-ATACATATATG-A
*
82056870 TATATATACATATATATATGA
1 -ATATATA-ATACATATATGA
*
82056891 ATGTAT-ATACATATATGA
1 ATATATAATACATATATGA
82056909 ATATATATATACATATATGA
1 ATATATA-ATACATATATGA
82056929 ATATAT-ATACATATATGA
1 ATATATAATACATATATGA
82056947 ATATA
1 ATATA
82056952 CTTTCTCGTC
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
18 33 0.44
20 23 0.31
21 1 0.01
22 18 0.24
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (19 bp):
ATATATAATACATATATGA
Found at i:82056875 original size:22 final size:22
Alignment explanation
Indices: 82056847--82056941 Score: 130
Period size: 20 Copynumber: 4.6 Consensus size: 22
82056837 AAGTGTTCAT
82056847 ATATATATACATACATATATGA
1 ATATATATACATACATATATGA
*
82056869 ATATATATACATATATATATG-
1 ATATATATACATACATATATGA
*
82056890 A-ATGTAT--ATACATATATGA
1 ATATATATACATACATATATGA
82056909 ATATATAT--ATACATATATGA
1 ATATATATACATACATATATGA
82056929 ATATATATACATA
1 ATATATATACATA
82056942 TATGAATATA
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
18 10 0.15
19 1 0.02
20 30 0.46
21 1 0.02
22 23 0.35
ACGTcount: A:0.49, C:0.06, G:0.05, T:0.39
Consensus pattern (22 bp):
ATATATATACATACATATATGA
Done.