Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 258 of 318
Found at i:82517295 original size:41 final size:41
Alignment explanation
Indices: 82517201--82517279 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
82517191 TGTTTTATTA
*
82517201 TAGACAAATTTAAAAGAATAAATTATTAAAAATATTAATTG
1 TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAATTG
82517242 TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAA
1 TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAA
82517280 ATTTCAACTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (41 bp):
TAGACAAATTTAAAAGAATAAATCATTAAAAATATTAATTG
Found at i:82517441 original size:25 final size:27
Alignment explanation
Indices: 82517396--82517447 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
82517386 GTTTAAGTTC
* *
82517396 GAAATTATAATTATATAAAAGGAATAT
1 GAAATTATAATTACATAAAAGAAATAT
82517423 GAAA-TATAATT-CATAAAAGAAATAT
1 GAAATTATAATTACATAAAAGAAATAT
82517448 AGCAATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 12 0.52
26 7 0.30
27 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATTATAATTACATAAAAGAAATAT
Found at i:82519656 original size:16 final size:16
Alignment explanation
Indices: 82519616--82519662 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
82519606 GGCCTGACCC
82519616 ATTTTT-TATTTTATA
1 ATTTTTATATTTTATA
* *
82519631 ATACTTTATATTTTATT
1 AT-TTTTATATTTTATA
*
82519648 ATTTTTATATATTAT
1 ATTTTTATATTTTAT
82519663 GTAATTTAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 2 0.08
16 14 0.54
17 10 0.38
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTTATATTTTATA
Found at i:82520164 original size:12 final size:13
Alignment explanation
Indices: 82520147--82520176 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82520137 TTTCAAACTA
82520147 AAATAC-ATGAGT
1 AAATACAATGAGT
82520159 AAATACAATGAGT
1 AAATACAATGAGT
82520172 AAATA
1 AAATA
82520177 TAGATATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (13 bp):
AAATACAATGAGT
Found at i:82520817 original size:19 final size:19
Alignment explanation
Indices: 82520793--82520838 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
82520783 AAATTTATCC
82520793 ATCACTTCTTCTATATCTA
1 ATCACTTCTTCTATATCTA
*
82520812 ATCACTTCTTCTATATCTT
1 ATCACTTCTTCTATATCTA
82520831 ATCACTTC
1 ATCACTTC
82520839 ATTATTCATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (19 bp):
ATCACTTCTTCTATATCTA
Found at i:82521228 original size:26 final size:26
Alignment explanation
Indices: 82521197--82521247 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
82521187 AAGACATTCC
*
82521197 TTTCATATTCCGCCACAAAAGCTTTA
1 TTTCATATTACGCCACAAAAGCTTTA
*
82521223 TTTCATATTACGCCACAAAGGCTTT
1 TTTCATATTACGCCACAAAAGCTTT
82521248 TATTGCATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.35
Consensus pattern (26 bp):
TTTCATATTACGCCACAAAAGCTTTA
Found at i:82529504 original size:46 final size:47
Alignment explanation
Indices: 82529437--82529606 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 47
82529427 TGTAACCCAC
* *
82529437 CCATAAGCGAACTCGAACTCAACTCAATGAGCTCGAG-TGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCTGTTCGCAT
* *
82529483 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GA-G-CT-GTTCGCAT
* * *
82529533 -C-TCA-CGAACTTGGACTCAACTCAACGAGCTTG-GAC-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAG-CTGTTCGCAT
*
82529576 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
82529607 TTCGGATGCC
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 2 0.02
46 54 0.53
47 26 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCTGTTCGCAT
Found at i:82529554 original size:93 final size:93
Alignment explanation
Indices: 82529444--82529616 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
82529434 CACCCATAAG
* *
82529444 CGAACTCGAACTCAACTCAATGAGCTC-GAGTGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGAACTCAACTCAACGAGCTCGGA-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
82529508 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * *
82529537 CGAACTTGGACTCAACTCAACGAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
82529602 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
82529617 CAAATATCCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:82535373 original size:46 final size:46
Alignment explanation
Indices: 82535322--82535480 Score: 191
Period size: 46 Copynumber: 3.4 Consensus size: 46
82535312 GCGAACTTGA
82535322 ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
* * *
82535368 ACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCGG
1 ACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCCATAAGTGAACTCGG
* *
82535415 ACTCAACTCAACGAGCTTGGACGTTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
*
82535461 ACTCAACTCAACGAGTTCGG
1 ACTCAACTCAACGAGCTCGG
82535481 ATGCCCAAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 46 0.49
47 27 0.29
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
Found at i:82535422 original size:93 final size:93
Alignment explanation
Indices: 82535313--82535485 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
82535303 CCGCCCATAG
* *
82535313 CGAACTTGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
82535378 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
82535406 CGAACTCGGACTCAACTCAACGAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
82535471 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
82535486 CAAATATCCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:82538629 original size:25 final size:24
Alignment explanation
Indices: 82538563--82538629 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
82538553 GAAGAAAGAA
* * *
82538563 AAAAACAACAAAGAAAATCTAATCT
1 AAAAA-AAGAAAGAAAAACTAAACT
*
82538588 AAAAAAAGAGAGAAAAAACTAAACT
1 AAAAAAAGAAAG-AAAAACTAAACT
*
82538613 AAAAAATGAAAAGAAAA
1 AAAAAAAG-AAAGAAAA
82538630 GAAAAGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 5 0.15
25 26 0.76
26 3 0.09
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.10
Consensus pattern (24 bp):
AAAAAAAGAAAGAAAAACTAAACT
Found at i:82541991 original size:28 final size:28
Alignment explanation
Indices: 82541960--82542029 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
82541950 ATATGAAACT
82541960 TAGTGTGCGAAATATTGAGAATGGA-ACG
1 TAGTGTGCGAAATATTGAGAAT-GACACG
* * *
82541988 TAGTGTGTGAGATATTGAGAATGACACT
1 TAGTGTGCGAAATATTGAGAATGACACG
*
82542016 TAGTGTTCGAAATA
1 TAGTGTGCGAAATA
82542030 CCGAATGGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (28 bp):
TAGTGTGCGAAATATTGAGAATGACACG
Found at i:82549164 original size:16 final size:16
Alignment explanation
Indices: 82549143--82549190 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
82549133 AACCCAATTT
*
82549143 TTATTTCTCTTTATTG
1 TTATTTTTCTTTATTG
*
82549159 TTATTTTTCTTTATTT
1 TTATTTTTCTTTATTG
82549175 TTATTTTTCATTTATT
1 TTATTTTTC-TTTATT
82549191 ATTTTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 23 0.79
17 6 0.21
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTTTCTTTATTG
Found at i:82549210 original size:21 final size:21
Alignment explanation
Indices: 82549184--82549233 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
82549174 TTTATTTTTC
* *
82549184 ATTTATTATTTTATTTTAATT
1 ATTTATTATTTTATCTTAATG
82549205 ATTTATTATTTTATCTTAATG
1 ATTTATTATTTTATCTTAATG
82549226 ATTTATTA
1 ATTTATTA
82549234 CTTAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTATTATTTTATCTTAATG
Found at i:82556304 original size:12 final size:12
Alignment explanation
Indices: 82556287--82556320 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
82556277 CGCCCGGGTA
82556287 CTACCACACGGC
1 CTACCACACGGC
*
82556299 CTACCACACGGG
1 CTACCACACGGC
*
82556311 CGACCACACG
1 CTACCACACG
82556321 CCCGTGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:82560598 original size:24 final size:24
Alignment explanation
Indices: 82560549--82560598 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
82560539 AAGAAATGAT
* *
82560549 AAATAAAAACAAAAAGAAACGCAA
1 AAATAAAAACAAAAAGAAAAGAAA
*
82560573 AAATAAAAATAAAATA-AAAAGAAA
1 AAATAAAAACAAAA-AGAAAAGAAA
82560597 AA
1 AA
82560599 CAAATTGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.80, C:0.06, G:0.06, T:0.08
Consensus pattern (24 bp):
AAATAAAAACAAAAAGAAAAGAAA
Found at i:82567605 original size:27 final size:27
Alignment explanation
Indices: 82567573--82567751 Score: 200
Period size: 27 Copynumber: 6.6 Consensus size: 27
82567563 TTAAATTGTA
82567573 TAGCACTAAGTGTGCGATTTGACTATG
1 TAGCACTAAGTGTGCGATTTGACTATG
* * *
82567600 TTGCACTAAGTGTGCGAAATGGA-TATG
1 TAGCACTAAGTGTGCG-ATTTGACTATG
* *
82567627 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCGATTTGACTATG
**
82567654 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TTTGACTATG
* *
82567682 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATTTGACTATG
* * *
82567709 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGATTTGACTATG
*
82567736 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
82567752 GACTCAATAT
Statistics
Matches: 130, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.04
27 98 0.75
28 27 0.21
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATTTGACTATG
Found at i:82567715 original size:82 final size:81
Alignment explanation
Indices: 82567575--82567730 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
82567565 AAATTGTATA
* *
82567575 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
82567640 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
82567656 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAG
*
82567719 TGTGCGAGTTGA
63 TGTGCGAATTGA
82567731 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 20 0.30
82 47 0.70
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82567742 original size:82 final size:81
Alignment explanation
Indices: 82567571--82567751 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
82567561 GATTAAATTG
* *
82567571 TATAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAA
82567636 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * *
82567652 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCAC
1 TATAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCAC
* **
82567715 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
*
82567734 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
82567752 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 21 0.25
82 62 0.75
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82575661 original size:27 final size:27
Alignment explanation
Indices: 82575630--82575807 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
82575620 TAAATTGTAC
82575630 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82575657 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG-ATTTGACTATGT
* * *
82575683 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82575711 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82575739 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82575766 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82575793 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82575808 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.04
27 97 0.75
28 27 0.21
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82575771 original size:82 final size:81
Alignment explanation
Indices: 82575631--82575786 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
82575621 AAATTGTACA
* *
82575631 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
82575696 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
82575712 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAG
*
82575775 TGTGCGAGTTGA
63 TGTGCGAATTGA
82575787 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 20 0.30
82 47 0.70
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82575798 original size:82 final size:81
Alignment explanation
Indices: 82575627--82575807 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
82575617 GATTAAATTG
* *
82575627 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAA
82575692 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
82575708 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCAC
* **
82575771 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
82575790 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82575808 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 22 0.26
82 62 0.74
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82580550 original size:42 final size:42
Alignment explanation
Indices: 82580500--82580582 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
82580490 ATTAAGAGAA
*
82580500 TGTTTTTAAACTAACACTAATTCTCTGATTAACTAAGATTGT
1 TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTGT
*
82580542 TGTTTTTAAACTAACACTAATTCTCTAATTAATTAAGATTG
1 TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTG
82580583 CGACAGAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.43
Consensus pattern (42 bp):
TGTTTTTAAACTAACACTAATTCTCTAATTAACTAAGATTGT
Found at i:82584220 original size:40 final size:40
Alignment explanation
Indices: 82584102--82584203 Score: 195
Period size: 40 Copynumber: 2.5 Consensus size: 40
82584092 TGACATATCA
*
82584102 GCTAAATATGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
1 GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
82584142 GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
1 GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
82584182 GCTAAATTTGGCACTTAGTGTG
1 GCTAAATTTGGCACTTAGTGTG
82584204 GGATTTGAGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
GCTAAATTTGGCACTTAGTGTGCGGTTCAGTATAGCTTCG
Found at i:82594739 original size:40 final size:40
Alignment explanation
Indices: 82594671--82594770 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
82594661 AGATTGAGTA
* *
82594671 TTAGCGGTGCTTTTTTA-AAAGCGCCGCT-ATATGTACACCT
1 TTAGCGGTGC-TTTTTAGAAAACGCCGCTAAT-TCTACACCT
* * * *
82594711 TTAGCGGTGCTTTTTAGAAAATGTCGCTAATTCTAGATCT
1 TTAGCGGTGCTTTTTAGAAAACGCCGCTAATTCTACACCT
82594751 TTAGCGGTG-TTTTTAGAAAA
1 TTAGCGGTGCTTTTTAGAAAA
82594771 ACGCAGCAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
39 17 0.33
40 33 0.63
41 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (40 bp):
TTAGCGGTGCTTTTTAGAAAACGCCGCTAATTCTACACCT
Found at i:82595128 original size:21 final size:21
Alignment explanation
Indices: 82595082--82595128 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
82595072 TTAATTATCA
* *
82595082 TTATAGTTTAGGGTTTATGAT
1 TTATGGTTAAGGGTTTATGAT
*
82595103 ATATGGTTAAGGGTTTAATG-T
1 TTATGGTTAAGGGTTT-ATGAT
82595124 TTATG
1 TTATG
82595129 AATTACTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGAT
Found at i:82595163 original size:15 final size:15
Alignment explanation
Indices: 82595143--82595205 Score: 69
Period size: 15 Copynumber: 4.4 Consensus size: 15
82595133 ACTATTTTAA
82595143 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
82595158 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
82595172 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
* *
82595187 GATTAATGG-TTA-G
1 GGTTTATGGATTATG
82595200 GGTTTA
1 GGTTTA
82595206 AGTTTTAGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
13 5 0.12
14 15 0.38
15 20 0.50
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:82595163 original size:22 final size:21
Alignment explanation
Indices: 82595138--82595247 Score: 73
Period size: 22 Copynumber: 5.1 Consensus size: 21
82595128 GAATTACTAT
82595138 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGG-TTATGGG
* *
82595160 TTTAGGGATTATGGTTTAT-GG
1 TTTAAGGTTTATGG-TTATGGG
* *
82595181 TTTATGGATTAATGGTTA-GGG
1 TTTAAGG-TTTATGGTTATGGG
* * *
82595202 TTTAAGTTTTAGAGGGTT-GGGG
1 TTTAAGGTTT--ATGGTTATGGG
*
82595224 TTTAAGGTTTATGTGTTAAGGG
1 TTTAAGGTTTATG-GTTATGGG
82595246 TT
1 TT
82595248 AAGTGTTAAG
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
20 4 0.06
21 21 0.31
22 43 0.63
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (21 bp):
TTTAAGGTTTATGGTTATGGG
Found at i:82595313 original size:7 final size:7
Alignment explanation
Indices: 82595138--82595314 Score: 68
Period size: 7 Copynumber: 24.7 Consensus size: 7
82595128 GAATTACTAT
*
82595138 TTTAAGG
1 TTTAGGG
*
82595145 TTTATGG
1 TTTAGGG
*
82595152 ATTATGGG
1 TTTA-GGG
82595160 TTTAGGG
1 TTTAGGG
* *
82595167 ATTATGG
1 TTTAGGG
*
82595174 TTTATGG
1 TTTAGGG
*
82595181 TTTATGGA
1 TTTA-GGG
* *
82595189 TTAATGG
1 TTTAGGG
82595196 -TTAGGG
1 TTTAGGG
* *
82595202 TTTAAGT
1 TTTAGGG
82595209 TTTAGAGG
1 TTTAG-GG
* *
82595217 GTTGGGG
1 TTTAGGG
*
82595224 TTTAAGG
1 TTTAGGG
*
82595231 TTTATGTG
1 TTTA-GGG
*
82595239 TTAAGGG
1 TTTAGGG
* *
82595246 TTAAGTG
1 TTTAGGG
*
82595253 TTAAGGG
1 TTTAGGG
* *
82595260 TTTATGT
1 TTTAGGG
**
82595267 TTTATTG
1 TTTAGGG
*
82595274 TTTAAGG
1 TTTAGGG
82595281 TTTAGGG
1 TTTAGGG
*
82595288 GTTAGGG
1 TTTAGGG
*
82595295 GTTAGGG
1 TTTAGGG
82595302 ATTTAGGG
1 -TTTAGGG
82595310 TTTAG
1 TTTAG
82595315 ATTAATTAGT
Statistics
Matches: 125, Mismatches: 39, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
6 4 0.03
7 98 0.78
8 23 0.18
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:82595965 original size:14 final size:14
Alignment explanation
Indices: 82595946--82595975 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82595936 TGATTTTTTT
*
82595946 ATTTATAAAAACTA
1 ATTTATAAAAAATA
82595960 ATTTATAAAAAATA
1 ATTTATAAAAAATA
82595974 AT
1 AT
82595976 AATAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
ATTTATAAAAAATA
Found at i:82599891 original size:75 final size:75
Alignment explanation
Indices: 82599768--82599918 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
82599758 TGCTTCCTTG
* *
82599768 TACTCATTCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAGGTAGGATACTAAGAATTTCCTG
1 TACTCATCCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
82599833 TACTATTCTT
66 TACTATTCTT
*
82599843 TACTCATCCTCATCCTCTTTATATTTTCCTATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
1 TACTCATCCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
82599908 TACTATTCTT
66 TACTATTCTT
82599918 T
1 T
82599919 CTGATTGCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (75 bp):
TACTCATCCTCATCCTCTTTATATTTTCCGATGCTTTCTTCAAGTAGGATACTAAGAATTTCCTG
TACTATTCTT
Found at i:82600230 original size:43 final size:43
Alignment explanation
Indices: 82600183--82600360 Score: 153
Period size: 43 Copynumber: 4.1 Consensus size: 43
82600173 ATTATATAGT
* * *
82600183 GGCGTTTTTAGAAAAAGTGCCGCTAAAAGCCATGGCCTTTAGC
1 GGCGTTTTTAGAAAAAGCGCCGCTAAAGGCCATGGCCTTTAAC
* * * *
82600226 GGCGTTTGCT-CAAAAAGCGCCGTTAAAGGCCATAGCCTTTAAC
1 GGCGTTT-TTAGAAAAAGCGCCGCTAAAGGCCATGGCCTTTAAC
* ** *
82600269 GACG-TTTGCGAAAAAAGCGCCGCTAAAGGTCATGGCCTTTAAC
1 GGCGTTTTTAG-AAAAAGCGCCGCTAAAGGCCATGGCCTTTAAC
* ** * * ** *
82600312 GGCATTTGCAAAAAAAGCGCCGCTAAAGGTCATGATCTTTAGC
1 GGCGTTTTTAGAAAAAGCGCCGCTAAAGGCCATGGCCTTTAAC
82600355 GGCGTT
1 GGCGTT
82600361 ACATATAGCG
Statistics
Matches: 107, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.02
43 102 0.95
44 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (43 bp):
GGCGTTTTTAGAAAAAGCGCCGCTAAAGGCCATGGCCTTTAAC
Found at i:82601882 original size:58 final size:57
Alignment explanation
Indices: 82601738--82601882 Score: 148
Period size: 57 Copynumber: 2.5 Consensus size: 57
82601728 GTCGTACATT
* * * ** *
82601738 TTACAGTAGGATTACCAGTCCAGGCTAAATCCTATCTGTAACATATTCTCTAGAGAGC
1 TTACA-TAGGATTACCCGTCCAGGCTAAATCCAATCTATAACATAAGCTCAAGAGAGC
* * * * *
82601796 TTA-ATATGGATTACCCGTCCGGGTTAAATCCAATTTATAACCTAAGCTCAAGAGGGC
1 TTACATA-GGATTACCCGTCCAGGCTAAATCCAATCTATAACATAAGCTCAAGAGAGC
*
82601853 TTACATTAGAATTACCCGTCCAGGCTAAAT
1 TTACA-TAGGATTACCCGTCCAGGCTAAAT
82601883 TCTATCTGCA
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
56 2 0.03
57 43 0.61
58 23 0.33
59 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (57 bp):
TTACATAGGATTACCCGTCCAGGCTAAATCCAATCTATAACATAAGCTCAAGAGAGC
Found at i:82603297 original size:21 final size:21
Alignment explanation
Indices: 82603273--82603313 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82603263 TACCTCAATC
* *
82603273 ACACGGGCATGTGTTTTAGCA
1 ACACGAGCATGTATTTTAGCA
*
82603294 ACACGATCATGTATTTTAGC
1 ACACGAGCATGTATTTTAGC
82603314 CAAAGGCATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (21 bp):
ACACGAGCATGTATTTTAGCA
Found at i:82610181 original size:6 final size:6
Alignment explanation
Indices: 82610172--82610210 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
82610162 CCAAAAATAT
** *
82610172 AAATGG AAATAA AAATGA AAATGG AAATGG AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAA
82610211 CTTGCAATCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (6 bp):
AAATGG
Found at i:82622616 original size:7 final size:7
Alignment explanation
Indices: 82622604--82622628 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82622594 AGAGCGCACT
82622604 GATATGA
1 GATATGA
82622611 GATATGA
1 GATATGA
82622618 GATATGA
1 GATATGA
82622625 GATA
1 GATA
82622629 GTAGTTGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
GATATGA
Found at i:82639789 original size:69 final size:71
Alignment explanation
Indices: 82639656--82639789 Score: 200
Period size: 69 Copynumber: 1.9 Consensus size: 71
82639646 TAGTTTATTA
* * * * *
82639656 CTAATTAATTTGCTACTGTAATGCTGTAAATTTATTGGCTGTCCAAATTAGGACAAATTTATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTTATTGGCTCTCCAAATTAGGACAAAATCATGGT
82639721 ACTTAG
66 ACTTAG
*
82639727 CTAATTAATATGCTGCTGTAATACT-TAAA-TTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTTATTGGCTCTCCAAATTAGGACAAAATCATGGT
82639790 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
69 31 0.54
70 4 0.07
71 22 0.39
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (71 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTTATTGGCTCTCCAAATTAGGACAAAATCATGGT
ACTTAG
Found at i:82641238 original size:47 final size:47
Alignment explanation
Indices: 82641172--82641428 Score: 437
Period size: 47 Copynumber: 5.5 Consensus size: 47
82641162 TATTTGAATA
*
82641172 AATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
82641218 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* *
82641265 AATGTGAAAGTGTATATATGTGATACGGCCTAATAG-CGATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
* *
82641311 AATGTGAAAGTGTATATATGTGATAAGGCGCTAATGGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGC-CTAATAGCCGATGTGATG
*
82641359 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
82641406 AATGTGAAAGTGTATATATGTGA
1 AATGTGAAAGTGTATATATGTGA
82641429 GATGAATGTA
Statistics
Matches: 200, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
46 43 0.22
47 120 0.60
48 37 0.19
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:82641442 original size:73 final size:75
Alignment explanation
Indices: 82641355--82641499 Score: 249
Period size: 74 Copynumber: 2.0 Consensus size: 75
82641345 TGGCCGACGT
82641355 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA-CGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATCGTGATGAATGTGAAAGTGT
82641419 ATATATGTGA
66 ATATATGTGA
* * *
82641429 GATGAATGT-AAAGTGTATATATGTGATAAGGCTTAATCGCCGATTGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATCGTGATGAATGTGAAAGTGT
82641493 ATATATG
66 ATATATG
82641500 ATAAGGCCTA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
73 32 0.48
74 35 0.52
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (75 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATCGTGATGAATGTGAAAGTGT
ATATATGTGA
Found at i:82641446 original size:26 final size:27
Alignment explanation
Indices: 82641402--82641454 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
82641392 TAGCCGACGT
82641402 GATGAATGTGAAAGTGTATATATGTGA
1 GATGAATGTGAAAGTGTATATATGTGA
82641429 GATGAATGT-AAAGTGTATATATGTGA
1 GATGAATGTGAAAGTGTATATATGTGA
82641455 TAAGGCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.34
Consensus pattern (27 bp):
GATGAATGTGAAAGTGTATATATGTGA
Found at i:82641448 original size:119 final size:118
Alignment explanation
Indices: 82641310--82641546 Score: 370
Period size: 121 Copynumber: 2.0 Consensus size: 118
82641300 GCGATGTGAC
*
82641310 GAATGTGAAAGTGTATATATGTGATAAGGCGCTAATGGCCGA-CGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTG-ATATATGTGATAAGGC-CTAATCGCCGATCGTGATGAATGTGAAAGTGTAT
82641374 ATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGAGAT
64 ATA--TGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA-GTGAGAT
* *
82641432 GAATGT-AAAGTGTATATATGTGATAAGGCTTAATCGCCGATTGTGATGAATGTGAAAGTGTATA
1 GAATGTGAAAGTG-ATATATGTGATAAGGCCTAATCGCCGATCGTGATGAATGTGAAAGTGTATA
*
82641496 TATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
65 TATGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATAGTGA
82641547 TAAGGCCTAA
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
118 4 0.04
119 44 0.40
120 9 0.08
121 47 0.43
122 6 0.05
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (118 bp):
GAATGTGAAAGTGATATATGTGATAAGGCCTAATCGCCGATCGTGATGAATGTGAAAGTGTATAT
ATGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATAGTGAGAT
Found at i:82641480 original size:47 final size:47
Alignment explanation
Indices: 82641429--82641738 Score: 475
Period size: 47 Copynumber: 6.7 Consensus size: 47
82641419 ATATATGTGA
* *
82641429 GATGAATGT-AAAGTGTATATATGTGATAAGGCTTAATCGCCGATTGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGT
*
82641476 GATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATAGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
82641521 GATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
82641567 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCTATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
82641614 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
82641661 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
82641708 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
82641739 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
45 25 0.10
46 62 0.25
47 146 0.60
48 12 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:82641603 original size:212 final size:214
Alignment explanation
Indices: 82641214--82641640 Score: 727
Period size: 212 Copynumber: 2.0 Consensus size: 214
82641204 TGGCCGATGT
82641214 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
82641279 TATATGTGATACGGCCTAATAGCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCGCTA
66 TATA-GTGATAAGGCCTAATAGCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCGCTA
82641344 ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
130 ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAAT
82641409 GTGAAAGTGTATATATGTGA
195 GTGAAAGTGTATATATGTGA
* *
82641429 GATGAATGT-AAAGTGTATATATGTGATAAGGCTTAATCGCCGATTGTGATGAATGTGAAAGTGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA-TGTGATGAATGTGAAAGTGT
*
82641493 ATATA-TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGC-CT
65 ATATAGTGATAAGGCCTAATAG-CGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCGCT
* * * *
82641555 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCTATGTGATGAA
129 AATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAA
82641620 TGTGAAAGTGTATATATGTGA
194 TGTGAAAGTGTATATATGTGA
82641641 TAAGGCCTAA
Statistics
Matches: 202, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
212 84 0.42
213 25 0.12
214 59 0.29
215 34 0.17
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (214 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
TATAGTGATAAGGCCTAATAGCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCGCTAA
TGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATG
TGAAAGTGTATATATGTGA
Found at i:82643514 original size:40 final size:40
Alignment explanation
Indices: 82643470--82643689 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
82643460 AAGTGAATAT
* * * * **
82643470 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
82643510 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
*
82643550 ATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
82643590 ATCCGGGTTAAGT-CCGAAGGCATTCGTGC-A-TTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
82643627 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
82643666 ATCCGGGCTATGT-CCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
82643690 TGAACGAGGA
Statistics
Matches: 163, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
37 22 0.13
38 24 0.15
39 33 0.20
40 84 0.52
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:82643678 original size:39 final size:40
Alignment explanation
Indices: 82643431--82643689 Score: 271
Period size: 40 Copynumber: 6.6 Consensus size: 40
82643421 TTGAATGCTG
* * * * * *
82643431 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
82643471 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
82643511 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
82643551 TCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
82643591 TCCGGGTTAAGT-CCGAAGGCATTCGTGC-A-TTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
82643628 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
82643667 TCCGGGCTATGT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82643690 TGAACGAGGA
Statistics
Matches: 193, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
37 22 0.11
38 24 0.12
39 33 0.17
40 106 0.55
41 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:82643723 original size:77 final size:78
Alignment explanation
Indices: 82643470--82643724 Score: 275
Period size: 77 Copynumber: 3.3 Consensus size: 78
82643460 AAGTGAATAT
* * *
82643470 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAA-ATCCCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCAT
82643534 TCGTGCGAGTTGTTAA
63 TCGTGCGAGTTGTTAA
* * **
82643550 ATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAATCCGGGTTAAGTCCGAAGGCATTC
1 ATCCGGGTTAAATCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTC
82643615 GTGC-A-TTGTTAA
65 GTGCGAGTTGTTAA
** * * * *
82643627 ATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCGAAGGCATTTG
1 ATCCGGGTTAAATCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTCG
** ** * *
82643692 AACGAGGAGCTAT
66 TGCGAGTTGTTAA
82643705 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAATCCCGAAGG
82643725 TACGTGATTT
Statistics
Matches: 148, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
76 34 0.23
77 46 0.31
78 8 0.05
79 20 0.14
80 40 0.27
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
ATCCGGGTTAAATCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTCG
TGCGAGTTGTTAA
Found at i:82651546 original size:39 final size:40
Alignment explanation
Indices: 82651340--82651601 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
82651330 TTGAATGCTG
* * * * *
82651340 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
* * * * **
82651380 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAAA
82651420 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
82651460 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
82651500 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-AATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * **
82651539 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
82651578 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
82651602 TGAACGAGGA
Statistics
Matches: 198, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.02
39 63 0.32
40 123 0.62
41 9 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:82651621 original size:118 final size:118
Alignment explanation
Indices: 82651416--82651636 Score: 300
Period size: 118 Copynumber: 1.9 Consensus size: 118
82651406 TGCGAGATAC
** *
82651416 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
** ** * *
82651481 ATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCAATTGT
66 ATTCGAACGAGGAGCTAAATCC-GGTTAAATCCCGAAGGCATTCGTGCAATTGT
* * *
82651535 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
* *
82651599 ATTTGAACGAGGAGCTATATCCGGTTAAATCCCGAAGG
66 ATTCGAACGAGGAGCTAAATCCGGTTAAATCCCGAAGG
82651637 TACGTGATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
117 15 0.17
118 46 0.52
119 27 0.31
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (118 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGCTAAATCCGGTTAAATCCCGAAGGCATTCGTGCAATTGT
Found at i:82655817 original size:20 final size:20
Alignment explanation
Indices: 82655787--82655836 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
82655777 CAATTTTAGG
* *
82655787 ATTTATTTTTATTTATCTT-T
1 ATTTATCTTTAATTAT-TTGT
*
82655807 ATTTGTCTTTAATTATTTGT
1 ATTTATCTTTAATTATTTGT
82655827 ATTTATCTTT
1 ATTTATCTTT
82655837 TGGAATTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.70
Consensus pattern (20 bp):
ATTTATCTTTAATTATTTGT
Found at i:82656633 original size:40 final size:37
Alignment explanation
Indices: 82656569--82656646 Score: 111
Period size: 37 Copynumber: 2.0 Consensus size: 37
82656559 TTGAAATCCC
*
82656569 AATCAAAACTTTTAATTCTGTTTTTATTTTTTTTCCA
1 AATCAAAACTTTTAATTCTGTTTTTATTTCTTTTCCA
*
82656606 AATCAAAACTTTTAATTCTATTTTTTTTATTTCTTTTCCA
1 AATCAAAACTTTTAATTC---TGTTTTTATTTCTTTTCCA
82656646 A
1 A
82656647 GTACGCAGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 18 0.50
40 18 0.50
ACGTcount: A:0.28, C:0.14, G:0.01, T:0.56
Consensus pattern (37 bp):
AATCAAAACTTTTAATTCTGTTTTTATTTCTTTTCCA
Found at i:82659230 original size:7 final size:7
Alignment explanation
Indices: 82659216--82659268 Score: 63
Period size: 7 Copynumber: 7.7 Consensus size: 7
82659206 TCTCTCATTC
82659216 TCTTTGT
1 TCTTTGT
*
82659223 TTTTTGT
1 TCTTTGT
*
82659230 TCGTTGT
1 TCTTTGT
82659237 TCTTTGT
1 TCTTTGT
*
82659244 TCTTTAT
1 TCTTTGT
*
82659251 TCTTTAT
1 TCTTTGT
82659258 TCTTTG-
1 TCTTTGT
82659264 TCTTT
1 TCTTT
82659269 TATTTTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
6 5 0.12
7 35 0.88
ACGTcount: A:0.04, C:0.13, G:0.11, T:0.72
Consensus pattern (7 bp):
TCTTTGT
Found at i:82659624 original size:16 final size:16
Alignment explanation
Indices: 82659584--82659626 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 16
82659574 ATTTAGATGT
*
82659584 TTAAATATT-TTATTA
1 TTAAATATTCTTGTTA
82659599 TT-AA-ATTCTTGTTA
1 TTAAATATTCTTGTTA
82659613 TTAAATATTCTTGT
1 TTAAATATTCTTGT
82659627 AATTTGATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 3 0.12
14 9 0.38
15 4 0.17
16 8 0.33
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (16 bp):
TTAAATATTCTTGTTA
Found at i:82669419 original size:21 final size:22
Alignment explanation
Indices: 82669379--82669420 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
82669369 GCCTAAATGG
*
82669379 TCACACGGATGTGTTGCCCCTC
1 TCACACGGACGTGTTGCCCCTC
*
82669401 TCACACGGGCGTG-TGCCCCT
1 TCACACGGACGTGTTGCCCCT
82669421 GTGTTAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.38, G:0.26, T:0.24
Consensus pattern (22 bp):
TCACACGGACGTGTTGCCCCTC
Found at i:82678554 original size:31 final size:31
Alignment explanation
Indices: 82678496--82678555 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
82678486 TCTTTTTTTT
* * *
82678496 AGTTAAAATTGATCGTCAACCTTTTAAAATG
1 AGTTAAAATTGATCATCAACATCTTAAAATG
* *
82678527 AGTTAAATTTGATCATTAACATCTTAAAA
1 AGTTAAAATTGATCATCAACATCTTAAAA
82678556 AAGAGTCAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.37
Consensus pattern (31 bp):
AGTTAAAATTGATCATCAACATCTTAAAATG
Found at i:82678989 original size:62 final size:62
Alignment explanation
Indices: 82678913--82679047 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 62
82678903 AGTACGTATG
82678913 TGGTACTTGAACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
1 TGGTA-TTG-ACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
82678977 TGGTATTGACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
1 TGGTATTGACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
82679039 TGGTATTGA
1 TGGTATTGA
82679048 TAGTCAATCT
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 63 0.89
63 3 0.04
64 5 0.07
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (62 bp):
TGGTATTGACTTTTTTTGGACCTAGTTGTTACTTAAACTAATACTATTAGTTTGTGTTGACA
Found at i:82680024 original size:22 final size:22
Alignment explanation
Indices: 82679960--82680025 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
82679950 GCACTAAGTC
82679960 AACAGGACGGCTCAACGCCGTA
1 AACAGGACGGCTCAACGCCGTA
* * * * *
82679982 GACAAGACGACTTAACACCGTA
1 AACAGGACGGCTCAACGCCGTA
*
82680004 AACAGGATGGCTCAACGCCGTA
1 AACAGGACGGCTCAACGCCGTA
82680026 GGTAGGACGA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.35, C:0.29, G:0.24, T:0.12
Consensus pattern (22 bp):
AACAGGACGGCTCAACGCCGTA
Found at i:82680047 original size:44 final size:44
Alignment explanation
Indices: 82679960--82680049 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
82679950 GCACTAAGTC
*
82679960 AACAGGACGGCTCAACGCCGTAGACAAGACGACTTAACACCGTA
1 AACAGGACGGCTCAACGCCGTAGACAAGACGACTAAACACCGTA
* ** * **
82680004 AACAGGATGGCTCAACGCCGTAGGTAGGACGACTAAAGGCCGTA
1 AACAGGACGGCTCAACGCCGTAGACAAGACGACTAAACACCGTA
82680048 AA
1 AA
82680050 TATCGCAGCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.36, C:0.26, G:0.27, T:0.12
Consensus pattern (44 bp):
AACAGGACGGCTCAACGCCGTAGACAAGACGACTAAACACCGTA
Found at i:82698385 original size:55 final size:54
Alignment explanation
Indices: 82698245--82698449 Score: 245
Period size: 55 Copynumber: 3.8 Consensus size: 54
82698235 GGGTGTTACA
* * * *
82698245 TTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
* * * *
82698298 TGACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTATC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AAC
* * *
82698353 TTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGA-AACC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA-C
*
82698407 TTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
82698450 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 40 0.31
54 8 0.06
55 76 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
Found at i:82703048 original size:93 final size:93
Alignment explanation
Indices: 82702946--82703142 Score: 227
Period size: 93 Copynumber: 2.1 Consensus size: 93
82702936 CTGCTTATAT
* * ** *
82702946 TTATTTGATCTGACAGTTTAACTGT-AATATACCGGTATAGCAATTTTACCACATCGCACTATA-
1 TTATCTGATCTGACAGTTGAACTGTAAAT-TACCAATATAGCAATTTTACCACACCGCACTATAT
*
82703009 CAACACATACGTTAGTTATGCTACGTACCA
65 C-ACACATACGTTAGCTATGCTACGTACCA
* * * * * *
82703039 TTATCTGATCTGGCAGTTGATCTGTAAATTACCAATATAGCAGTTTTACCGCACCGCATTGTATC
1 TTATCTGATCTGACAGTTGAACTGTAAATTACCAATATAGCAATTTTACCACACCGCACTATATC
* * *
82703104 ATACGTACGTTAGCTATGTTACGTACCA
66 ACACATACGTTAGCTATGCTACGTACCA
82703132 TTATCTGATCT
1 TTATCTGATCT
82703143 AGCAATTAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
93 83 0.95
94 4 0.05
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (93 bp):
TTATCTGATCTGACAGTTGAACTGTAAATTACCAATATAGCAATTTTACCACACCGCACTATATC
ACACATACGTTAGCTATGCTACGTACCA
Found at i:82703174 original size:93 final size:92
Alignment explanation
Indices: 82703016--82703183 Score: 228
Period size: 93 Copynumber: 1.8 Consensus size: 92
82703006 ATACAACACA
* * * * * * *
82703016 TACGTTAGTTATGCTACGTACCATTATCTGATCTGGCAGTTGATCTGTAAATTACCAATATAGCA
1 TACGTTAGCTATGCTACGTACCATTATCTGATCTAGCAATTAAACTGCAAATTACCAATAAAGCA
82703081 GTTTTACCGCACCGCATTGTATCATACG
66 G-TTTACCGCACCGCATTGTATCATACG
* ***
82703109 TACGTTAGCTATGTTACGTACCATTATCTGATCTAGCAATTAAACTGCAAATTACTGGTAAAGCA
1 TACGTTAGCTATGCTACGTACCATTATCTGATCTAGCAATTAAACTGCAAATTACCAATAAAGCA
82703174 GTTTACCGCA
66 GTTTACCGCA
82703184 TTGCACTATA
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
92 9 0.14
93 55 0.86
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (92 bp):
TACGTTAGCTATGCTACGTACCATTATCTGATCTAGCAATTAAACTGCAAATTACCAATAAAGCA
GTTTACCGCACCGCATTGTATCATACG
Found at i:82705769 original size:13 final size:13
Alignment explanation
Indices: 82705751--82705778 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82705741 TGATTTTGAA
82705751 TTGAACAACACCC
1 TTGAACAACACCC
82705764 TTGAACAACACCC
1 TTGAACAACACCC
82705777 TT
1 TT
82705779 ATAGTCCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.07, T:0.21
Consensus pattern (13 bp):
TTGAACAACACCC
Found at i:82713466 original size:3 final size:3
Alignment explanation
Indices: 82713458--82713482 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
82713448 TTTTTGTGTG
82713458 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
82713483 TTTGTTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:82715537 original size:20 final size:20
Alignment explanation
Indices: 82715512--82715566 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
82715502 AACAAGGGTT
82715512 ACACGCCCGTATGGTTCGGG
1 ACACGCCCGTATGGTTCGGG
82715532 ACACGCCCGTATGGTTCGGG
1 ACACGCCCGTATGGTTCGGG
*
82715552 ACACGCCCGTGTGGT
1 ACACGCCCGTATGGT
82715567 AGCACACGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.20
Consensus pattern (20 bp):
ACACGCCCGTATGGTTCGGG
Found at i:82717214 original size:27 final size:27
Alignment explanation
Indices: 82717184--82717522 Score: 169
Period size: 27 Copynumber: 12.7 Consensus size: 27
82717174 AATGTCTTCA
* *
82717184 ATTTGTAAAATTACCAAAGTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * * **
82717211 ATTTACAGATTTACC-GTTTCACCCTCG
1 ATTTATAAAATTACCAAATT-ACCCTCG
* **
82717238 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* ****
82717265 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* **
82717292 ATTTACAAAATTACCATTTTACCCTC-
1 ATTTATAAAATTACCAAATTACCCTCG
* **
82717318 AGTTTACAAAATTACCATTTTACCCTCG
1 A-TTTATAAAATTACCAAATTACCCTCG
* * *
82717346 A-TTATGAAATTACTGAAA-TACCC-CC
1 ATTTATAAAATTAC-CAAATTACCCTCG
* * * *
82717371 AGTTGTAAAATTACCAAAGTA-CCGCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * *
82717397 GTTTATAAAATTACCCAAA-TATCCTCA
1 ATTTATAAAATTA-CCAAATTACCCTCG
*
82717424 ATTTGTAAAATTACCGAAA-TACCCTC-
1 ATTTATAAAATTACC-AAATTACCCTCG
** *
82717450 AGTTTGCAAAATTACTGAAA-TACCCTCG
1 A-TTTATAAAATTAC-CAAATTACCCTCG
** *
82717478 ATCAATAAAATTACCAAAATACCC-CTG
1 ATTTATAAAATTACCAAATTACCCTC-G
* *
82717505 GTTTGTAAAATTACCAAA
1 ATTTATAAAATTACCAAA
82717523 ATGCTCTTGG
Statistics
Matches: 249, Mismatches: 47, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
25 7 0.03
26 49 0.20
27 188 0.76
28 5 0.02
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (27 bp):
ATTTATAAAATTACCAAATTACCCTCG
Found at i:82717261 original size:54 final size:54
Alignment explanation
Indices: 82717203--82717348 Score: 222
Period size: 54 Copynumber: 2.7 Consensus size: 54
82717193 ATTACCAAAG
* *
82717203 TACCCTCGATTTACAGATTTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
* *
82717257 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
* *
82717311 TACCCTC-AGTTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATT
82717349 ATGAAATTAC
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 82 0.99
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
Found at i:82717294 original size:81 final size:80
Alignment explanation
Indices: 82717203--82717360 Score: 239
Period size: 81 Copynumber: 2.0 Consensus size: 80
82717193 ATTACCAAAG
* * *
82717203 TACCCTCGATTTACAGATTTACCGTTTCACCCTC-GATTTACAAAATTACCATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCATTTCACCCTCAG-TTTACAAAATTACCATTTTACCCTCGA-
82717267 TTAT-AGAATTACTGTTT
64 TTATGA-AATTACTGTTT
*
82717284 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTCACCCTCAGTTTACAAAATTACCATTTTACCCTCGATT
82717349 ATGAAATTACTG
66 ATGAAATTACTG
82717361 AAATACCCCC
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
80 12 0.17
81 58 0.82
82 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACCATTTCACCCTCAGTTTACAAAATTACCATTTTACCCTCGATT
ATGAAATTACTGTTT
Found at i:82717523 original size:27 final size:27
Alignment explanation
Indices: 82717373--82717558 Score: 119
Period size: 27 Copynumber: 6.9 Consensus size: 27
82717363 ATACCCCCAG
* *
82717373 TTGTAAAATTACCAAAGTACCGC-GGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * * **
82717399 TTATAAAATTACCCAAATA-TCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
* *
82717426 TTGTAAAATTACCGAAATA-CCCTCAGT
1 TTGTAAAATTACCAAAATACCCCT-GGT
* ** *
82717453 TTGCAAAATTACTGAAATA-CCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
***
82717480 CAATAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
82717507 TTGTAAAATTACCAAAATGCTCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
** *
82717534 TTACAAAATTACCGAAATACCCCTG
1 TTGTAAAATTACCAAAATACCCCTG
82717559 TAGCATAGAA
Statistics
Matches: 123, Mismatches: 34, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
25 1 0.01
26 16 0.13
27 102 0.83
28 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:82717570 original size:27 final size:27
Alignment explanation
Indices: 82717540--82718131 Score: 765
Period size: 27 Copynumber: 22.3 Consensus size: 27
82717530 TGGTTTACAA
**
82717540 AATTACCGAAATACCCCTGTAGCATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82717567 AATTACC-AGAATACCCCTATAGGTTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
82717594 AATTATCGAATTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82717621 AATAACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82717648 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82717675 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82717702 AATTATCGTAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82717729 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82717756 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82717783 AA-T-------TACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82717802 AATTATCGCAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82717829 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82717856 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82717883 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82717910 AATTATCGCAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82717937 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82717964 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82717991 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82718018 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
82718045 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
82718072 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82718099 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
82718125 AATTACC
1 AATTACC
82718132 ATTTTGCCCT
Statistics
Matches: 496, Mismatches: 58, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
19 18 0.04
20 1 0.00
26 20 0.04
27 456 0.92
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:82717571 original size:81 final size:81
Alignment explanation
Indices: 82717425--82717584 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
82717415 ATATCCTCAA
* * * *
82717425 TTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAATAAAATT
1 TTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGAGCAATAAAATT
82717490 ACCAAAATACCCCTGG
66 ACCAAAATACCCCTGG
* * ** *
82717506 TTTGTAAAATTACCAAAATGCTCTTGGTTTACAAAATTACCGAAATACCC-CTGTAGC-ATAGAA
1 TTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTC-G-AGCAATAAAA
*
82717569 TTACCAGAATACCCCT
64 TTACCAAAATACCCCT
82717585 ATAGGTTAGA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.01
81 64 0.96
82 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (81 bp):
TTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGAGCAATAAAATT
ACCAAAATACCCCTGG
Found at i:82717791 original size:19 final size:19
Alignment explanation
Indices: 82717767--82717806 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
82717757 ATTATCGAAA
82717767 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
82717786 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
82717805 TA
1 TA
82717807 TCGCAATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (19 bp):
TACCCCTGTAGGGTAGAAT
Found at i:82718609 original size:22 final size:22
Alignment explanation
Indices: 82718557--82718621 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
82718547 TTAAAGCCTT
* *
82718557 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
82718579 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
82718601 CTGATTATGGCTGTGTACCAA
1 CTGATTATGGCTCTGTGCCAA
82718622 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:82718809 original size:27 final size:27
Alignment explanation
Indices: 82718779--82718880 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
82718769 ATTCTGTTAA
* *
82718779 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
82718806 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
82718833 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
82718860 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
82718881 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:82719022 original size:6 final size:6
Alignment explanation
Indices: 82719012--82719210 Score: 205
Period size: 6 Copynumber: 32.8 Consensus size: 6
82719002 TTGCATTCAC
* *
82719012 ATTCTG GTTCTG ATTCTG -TTATG TAATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG --ATTCTG ATTCTG ATTCTG ATTCTG
* *
82719061 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * *
82719109 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
82719158 ATAT-TG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
82719206 ATTCT
1 ATTCT
82719211 AATGTTTCTT
Statistics
Matches: 163, Mismatches: 14, Indels: 32
0.78 0.07 0.15
Matches are distributed among these distances:
5 14 0.09
6 135 0.83
7 8 0.05
8 6 0.04
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:82719167 original size:91 final size:91
Alignment explanation
Indices: 82719012--82719210 Score: 353
Period size: 91 Copynumber: 2.2 Consensus size: 91
82719002 TTGCATTCAC
* * **
82719012 ATTCTGGTTCTGATTCTGTTATGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
82719077 TGATTCTGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGATTCTGTTACTG
*
82719103 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
82719168 TGATTCTGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGATTCTGTTACTG
82719194 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
82719211 AATGTTTCTT
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 103 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (91 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGATTCTGTTACTG
Found at i:82720861 original size:40 final size:40
Alignment explanation
Indices: 82720824--82721009 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
82720814 GCTACTCGTT
* *
82720824 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82720864 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82720904 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
82720944 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82720985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82721010 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82720901 original size:80 final size:79
Alignment explanation
Indices: 82720791--82721009 Score: 230
Period size: 80 Copynumber: 2.7 Consensus size: 79
82720781 AAATCACGTA
* ** *
82720791 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAG
82720855 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* * *
82720870 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGAACTTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTA
*
82720934 GTAACTCGCACCAATG
64 GTAACTCGCACAAATG
* * * * * *
82720950 CCTTCGGATCTTAGTCCGGATAT-GGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTA-ACCGGATATAGCT-AC-TCGCACAAATGCCTTCGGGACATAACCCGGA
82721010 CATCATTCGA
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
79 14 0.12
80 95 0.80
81 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGT
AACTCGCACAAATG
Found at i:82722151 original size:56 final size:56
Alignment explanation
Indices: 82722084--82722259 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
82722074 TATTAGTTTA
82722084 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
82722140 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
82722196 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
82722252 TTGCCCAT
1 TTGCCCAT
82722260 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:82728767 original size:40 final size:40
Alignment explanation
Indices: 82728730--82728915 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
82728720 GCTACTCGTT
* *
82728730 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82728770 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
82728810 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * * *
82728850 CCAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82728891 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82728916 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82730057 original size:56 final size:56
Alignment explanation
Indices: 82729990--82730165 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
82729980 TATTAGTTTA
82729990 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
82730046 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
82730102 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
82730158 TTGCCCAT
1 TTGCCCAT
82730166 CATCCTTGTC
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:82732228 original size:27 final size:27
Alignment explanation
Indices: 82732209--82732354 Score: 222
Period size: 27 Copynumber: 5.4 Consensus size: 27
82732199 ATTACCAAAG
* *
82732209 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
82732236 CACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* **
82732263 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
82732290 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
82732317 TACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACCATTT
82732344 TACCCTCGATT
1 TACCCTCGATT
82732355 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 105 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:82732433 original size:27 final size:27
Alignment explanation
Indices: 82732290--82732561 Score: 117
Period size: 27 Copynumber: 10.2 Consensus size: 27
82732280 ATTACTGTTT
* * **
82732290 TACCCTCGATTTACAAAATTA-CCATTT
1 TACCCTCAATTTATAAAATTACCCA-AA
* * **
82732317 TACCCTCAGTTTACAAAATTA-CCATTT
1 TACCCTCAATTTATAAAATTACCCA-AA
* * **
82732344 TACCCTCGA-TTATGAAATTACTGAAA
1 TACCCTCAATTTATAAAATTACCCAAA
* * *
82732370 TACCC-CCAGTTGTAAAATTA-CCAAA
1 TACCCTCAATTTATAAAATTACCCAAA
*
82732395 GTACCC-CGATTTATAAAATTACCCAAA
1 -TACCCTCAATTTATAAAATTACCCAAA
* * *
82732422 TATCCTCAATTTGTAAAATTACCGAAA
1 TACCCTCAATTTATAAAATTACCCAAA
* ** **
82732449 TACCCTCAGTTTGCAAAATTACTGAAA
1 TACCCTCAATTTATAAAATTACCCAAA
* ** *
82732476 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTACCCAAA
** * *
82732503 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTATAAAATTACCCAAA
* *** * *
82732530 TGCCCTTGGTTTACAAAATTACCGAAA
1 TACCCTCAATTTATAAAATTACCCAAA
82732557 TACCC
1 TACCC
82732562 CTGTAGCATA
Statistics
Matches: 194, Mismatches: 44, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
25 5 0.03
26 45 0.23
27 144 0.74
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCAATTTATAAAATTACCCAAA
Found at i:82732493 original size:54 final size:54
Alignment explanation
Indices: 82732382--82732563 Score: 145
Period size: 54 Copynumber: 3.4 Consensus size: 54
82732372 CCCCCAGTTG
* ** * * * ***
82732382 TAAAATTACC-AAAGTACCCCGA-TTTATAAAATTACCCAAATATCCTCAATTTG
1 TAAAATTACCGAAA-TACCCCTAGTTTGCAAAATTACCAAAATACCCTCGATCAA
**
82732435 TAAAATTACCGAAATA-CCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACCGAAATACCCCT-AGTTTGCAAAATTACCAAAATACCCTCGATCAA
* * * * * * **
82732489 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATGCCCTTGGTTTA
1 TAAAATTACCGAAATACCCCTAGTTTGCAAAATTACCAAAATACCCTCGATCAA
*
82732543 CAAAATTACCGAAATACCCCT
1 TAAAATTACCGAAATACCCCT
82732564 GTAGCATAGA
Statistics
Matches: 103, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
52 3 0.03
53 13 0.13
54 83 0.81
55 4 0.04
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCCTAGTTTGCAAAATTACCAAAATACCCTCGATCAA
Found at i:82732516 original size:81 final size:79
Alignment explanation
Indices: 82732358--82732562 Score: 216
Period size: 81 Copynumber: 2.6 Consensus size: 79
82732348 CTCGATTATG
* * * * ** *
82732358 AAATTACTGAAATACCCCCAG-TTGTAAAATTACCAAAGTACCCCGATTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCTCAGTTTGCAAAATTACGAAA-TACCCCGATCAATAAAATTACCAAAA
*
82732422 TATCCTCAATTTGTA
65 TACCCTCAATTTGTA
82732437 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAATAAAATTACCAAA
1 AAATTACCGAAATACCCTCAGTTTGCAAAATTAC-GAAATACCC-CGATCAATAAAATTACCAAA
**
82732502 ATACCC-CTGGTTTGTA
64 ATACCCTC-AATTTGTA
* * ** *
82732518 AAATTACCAAAATGCCCTTGGTTTACAAAATTACCGAAATACCCC
1 AAATTACCGAAATACCCTCAGTTTGCAAAATTA-CGAAATACCCC
82732563 TGTAGCATAG
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
79 19 0.18
80 18 0.17
81 68 0.64
82 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (79 bp):
AAATTACCGAAATACCCTCAGTTTGCAAAATTACGAAATACCCCGATCAATAAAATTACCAAAAT
ACCCTCAATTTGTA
Found at i:82732576 original size:27 final size:27
Alignment explanation
Indices: 82732546--82733137 Score: 745
Period size: 27 Copynumber: 22.3 Consensus size: 27
82732536 TGGTTTACAA
**
82732546 AATTACCGAAATACCCCTGTAGCATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732573 AATTACCGGAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732600 AATTATCGAATTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732627 AATAACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
82732654 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82732681 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
82732708 AATTATCGTAATACCCTTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82732735 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732762 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82732789 AA-T-------TACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82732808 AATTATCGCAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
82732835 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82732862 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82732889 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732916 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82732943 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732970 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82732997 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82733024 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
82733051 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
82733078 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
82733105 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
82733131 AATTACC
1 AATTACC
82733138 ATTTTGCCCT
Statistics
Matches: 495, Mismatches: 61, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.04
20 1 0.00
26 19 0.04
27 457 0.92
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:82732577 original size:81 final size:81
Alignment explanation
Indices: 82732431--82732591 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 81
82732421 ATATCCTCAA
* * * *
82732431 TTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAATAAAATT
1 TTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGAGCAATAAAATT
82732496 ACCAAAATACCCCTGG
66 ACCAAAATACCCCTGG
* ** *
82732512 TTTGTAAAATTACCAAAATGCCCTTGGTTTACAAAATTACCGAAATACCC-CTGTAGC-ATAGAA
1 TTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTC-G-AGCAATAAAA
**
82732575 TTACCGGAATACCCCTG
64 TTACCAAAATACCCCTG
82732592 TAGGTTAGAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.01
81 65 0.96
82 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (81 bp):
TTTGTAAAATTACCAAAATACCCTCAGTTTACAAAATTACCGAAATACCCTCGAGCAATAAAATT
ACCAAAATACCCCTGG
Found at i:82732797 original size:19 final size:19
Alignment explanation
Indices: 82732773--82732812 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
82732763 ATTATCAAAA
82732773 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
82732792 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTAGGGTAGAAT
82732811 TA
1 TA
82732813 TCGCAATACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (19 bp):
TACCCCTGTAGGGTAGAAT
Found at i:82733596 original size:22 final size:22
Alignment explanation
Indices: 82733566--82733627 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
82733556 AAGCCTTCTG
* *
82733566 ATTATGGCTTTGTGTCAACATA
1 ATTATGGCTCTGTGCCAACATA
*
82733588 CA-TATGGCTCTGTGCCAACCTA
1 -ATTATGGCTCTGTGCCAACATA
*
82733610 ATTATGGCTGTGTGCCAA
1 ATTATGGCTCTGTGCCAA
82733628 ACGCATTTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACATA
Found at i:82733867 original size:27 final size:26
Alignment explanation
Indices: 82733785--82733886 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
82733775 ATTCTGTTAA
* * *
82733785 GTGGCTTTGCCACATTATCTGTTTCTA
1 GTGGCTCTGCCACAATATCTG-TTCTG
* * *
82733812 GTGGCTATGCCATAAATATCTGTTATG
1 GTGGCTCTGCCA-CAATATCTGTTCTG
82733839 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
82733866 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
82733887 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 9 0.14
27 47 0.75
28 7 0.11
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:82734061 original size:6 final size:6
Alignment explanation
Indices: 82734042--82734203 Score: 165
Period size: 6 Copynumber: 26.8 Consensus size: 6
82734032 CTGTCACATA
* * *
82734042 ATTCTG ATTTTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* *
82734090 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
82734139 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
82734187 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
82734204 AATGTTTCTT
Statistics
Matches: 131, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.08
6 111 0.85
7 8 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:82734086 original size:30 final size:30
Alignment explanation
Indices: 82734017--82734203 Score: 233
Period size: 30 Copynumber: 6.4 Consensus size: 30
82734007 TTGCATTCAC
* * *
82734017 ATTCTGGTTCTGATTCTGTCACATAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
*
82734048 ATTTTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
82734078 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
82734102 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
82734133 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
82734163 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
82734193 ATTCTGATTCT
1 ATTCTGATTCT
82734204 AATGTTTCTT
Statistics
Matches: 137, Mismatches: 12, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
24 23 0.17
26 1 0.01
29 1 0.01
30 69 0.50
31 43 0.31
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:82734165 original size:85 final size:85
Alignment explanation
Indices: 82734017--82734203 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
82734007 TTGCATTCAC
* *
82734017 ATTCTGGTTCTGATTCTGTCACATAATTCTGATTTTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
82734082 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
82734102 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
82734167 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
82734187 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
82734204 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:82736493 original size:15 final size:17
Alignment explanation
Indices: 82736463--82736494 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
82736453 TTGATACTTG
82736463 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
82736480 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
82736495 AATTATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:82737909 original size:13 final size:13
Alignment explanation
Indices: 82737893--82737925 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82737883 TTTAATTAAA
*
82737893 TTAGTTAATTAGT
1 TTAGATAATTAGT
82737906 TTAGATAATTAGT
1 TTAGATAATTAGT
82737919 TTA-ATAA
1 TTAGATAA
82737926 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:82743253 original size:14 final size:14
Alignment explanation
Indices: 82743228--82743265 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
82743218 TGAATCCTCC
82743228 TATTTT-TTTATTT
1 TATTTTATTTATTT
82743241 TATTTTATTTATTT
1 TATTTTATTTATTT
82743255 TATTCTTATTT
1 TATT-TTATTT
82743266 TTCTTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 6 0.26
14 11 0.48
15 6 0.26
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (14 bp):
TATTTTATTTATTT
Found at i:82743284 original size:5 final size:5
Alignment explanation
Indices: 82743233--82743266 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
82743223 CCTCCTATTT
82743233 TTTTA TTTTA TTTTA -TTTA TTTTA TTCTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTT
82743267 TCTTTTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.67
6 5 0.19
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:82746158 original size:13 final size:13
Alignment explanation
Indices: 82746142--82746174 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82746132 TTTAATTAAA
*
82746142 TTAGTTAATTAGT
1 TTAGATAATTAGT
82746155 TTAGATAATTAGT
1 TTAGATAATTAGT
82746168 TTA-ATAA
1 TTAGATAA
82746175 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:82754599 original size:22 final size:23
Alignment explanation
Indices: 82754572--82754623 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
82754562 TATAAGTCCT
*
82754572 AATAAAAA-TACTGTGAAAGA-AA
1 AATAAAAAGTACTCTGAAA-ATAA
*
82754594 AATAAAAAGTACTCTTAAAATAA
1 AATAAAAAGTACTCTGAAAATAA
82754617 AATAAAA
1 AATAAAA
82754624 GTAAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTACTCTGAAAATAA
Found at i:82766554 original size:19 final size:20
Alignment explanation
Indices: 82766532--82766570 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82766522 TCAAGAAGTC
*
82766532 ATCAATGAC-ACTTCAAAAA
1 ATCAATAACAACTTCAAAAA
*
82766551 ATCATTAACAACTTCAAAAA
1 ATCAATAACAACTTCAAAAA
82766571 TTAAGGCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.23
Consensus pattern (20 bp):
ATCAATAACAACTTCAAAAA
Found at i:82784309 original size:49 final size:47
Alignment explanation
Indices: 82784194--82784365 Score: 141
Period size: 47 Copynumber: 3.6 Consensus size: 47
82784184 TGTGTTAGTG
** * * * *
82784194 TAAGACCATGTCAGGGACATGGCATC-AGCATGGATATGTAAGAGCTAGTG
1 TAAGACCATGTTTGGGACATGGCATCGA-C-TCGATA-G-ATGAGCCAGTA
* * * *
82784244 TAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTAGAT-AGTCAGTA
1 TAAGACCATGTTTGGGACATGGCATC-GACTCGA--TAGATGAGCCAGTA
* * * *
82784293 TATGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAGTG
1 TAAGACCATGTTTGGGACATGGCATCGACTCGATAGATGAGCCAGTA
82784340 TAAGACCATGTTTGGGACATGGCATC
1 TAAGACCATGTTTGGGACATGGCATC
82784366 AGCATTATAC
Statistics
Matches: 100, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 4 0.04
47 31 0.31
48 5 0.05
49 28 0.28
50 28 0.28
51 2 0.02
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTTTGGGACATGGCATCGACTCGATAGATGAGCCAGTA
Found at i:82784353 original size:47 final size:47
Alignment explanation
Indices: 82784098--82784365 Score: 169
Period size: 46 Copynumber: 5.7 Consensus size: 47
82784088 TATTTGTGTT
*
82784098 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGA--GATGTAAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATGGATG--AG
* * * * *
82784144 CCAATGTAAGA-CATGTCTAGGACAT-GTATCGGCTACGA--GATGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGATGGATGAG
** * * * *
82784188 TTAGTGTAAGACCATGTCAGGGACATGGCATC-AGCATGGATATGTAAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TCG--ATGGATGAG
* * * *
82784238 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTAGAT-AG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA--TGGATGAG
* * * * *
82784287 TCAGTATATGACCATGTTTGGGACATGGCATCGACTTGATGGATGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAG
*
82784334 CCAGTGTAAGACCATGTTTGGGACATGGCATC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC
82784366 AGCATTATAC
Statistics
Matches: 172, Mismatches: 36, Indels: 27
0.73 0.15 0.11
Matches are distributed among these distances:
44 9 0.05
45 15 0.09
46 44 0.26
47 32 0.19
48 7 0.04
49 28 0.16
50 36 0.21
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAG
Found at i:82788890 original size:17 final size:18
Alignment explanation
Indices: 82788849--82788892 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
82788839 AGTTATTAGG
*
82788849 CCACATGTCCGTATGGGC
1 CCACATGCCCGTATGGGC
* *
82788867 TCACATGCCCGTGT-GGC
1 CCACATGCCCGTATGGGC
82788884 CCACATGCC
1 CCACATGCC
82788893 TAGATTGGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.16, C:0.39, G:0.25, T:0.20
Consensus pattern (18 bp):
CCACATGCCCGTATGGGC
Found at i:82794789 original size:17 final size:18
Alignment explanation
Indices: 82794767--82794810 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
82794757 ATCTCGTTCG
*
82794767 TATTTTTAG--AAAACATT
1 TATTTTTAGTAAAAAC-TA
82794784 TATTTTTAGTAAAAACTA
1 TATTTTTAGTAAAAACTA
82794802 TATTTTTAG
1 TATTTTTAG
82794811 CCAATCATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 9 0.38
18 10 0.42
19 5 0.21
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (18 bp):
TATTTTTAGTAAAAACTA
Found at i:82800070 original size:42 final size:43
Alignment explanation
Indices: 82800005--82800125 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 43
82799995 TTGAATACCG
* * * * *
82800005 ATGCCACTGTCCTAGATAGGGTCTTACACGAAAT-T-ATATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAAT-CA
* **
82800047 ATGTCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATTT
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCTCAAATCA
* *
82800091 TTGCCAATGTCCCAGACGTGGTCTTACACGAAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATC
82800126 ACATATCGAA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 25 0.38
43 9 0.14
44 28 0.43
45 3 0.05
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAATCA
Found at i:82800883 original size:17 final size:17
Alignment explanation
Indices: 82800861--82800899 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
82800851 CAATGATCTC
82800861 AAAAACGTAAAAATTAT
1 AAAAACGTAAAAATTAT
82800878 AAAAACGTAAAAATTAT
1 AAAAACGTAAAAATTAT
82800895 AAAAA
1 AAAAA
82800900 ACCGAGCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAACGTAAAAATTAT
Found at i:82801877 original size:34 final size:33
Alignment explanation
Indices: 82801833--82801902 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 33
82801823 TTATTTTCAT
82801833 AATGCACTGAAAGTTCAAAAATAATGCATCAAAA
1 AATGCACTGAAAGTTCAAAAATAATGCA-CAAAA
* * *
82801867 AATGCTCTGAAAGTTCGAAAATAATGCACTAAA
1 AATGCACTGAAAGTTCAAAAATAATGCACAAAA
82801900 AAT
1 AAT
82801903 CTAATCGACC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 7 0.21
34 26 0.79
ACGTcount: A:0.50, C:0.14, G:0.13, T:0.23
Consensus pattern (33 bp):
AATGCACTGAAAGTTCAAAAATAATGCACAAAA
Found at i:82802244 original size:20 final size:22
Alignment explanation
Indices: 82802215--82802259 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
82802205 ACAAAACCAT
* *
82802215 AAACCTAA-CCCT-ACTTTAAA
1 AAACCAAACCCCTAACTCTAAA
82802235 AAACCAAACCCCTAACTCTAAA
1 AAACCAAACCCCTAACTCTAAA
82802257 AAA
1 AAA
82802260 AAGGATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 4 0.19
22 10 0.48
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACCAAACCCCTAACTCTAAA
Found at i:82802984 original size:18 final size:18
Alignment explanation
Indices: 82802961--82802996 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
82802951 GTTAAATAGA
*
82802961 CACAAATTTTCCAATTTT
1 CACAAAATTTCCAATTTT
82802979 CACAAAATTTCCAATTTT
1 CACAAAATTTCCAATTTT
82802997 TATTGCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (18 bp):
CACAAAATTTCCAATTTT
Found at i:82807780 original size:23 final size:21
Alignment explanation
Indices: 82807754--82807794 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
82807744 AATTAAATTA
82807754 TATATATTATGATTTTAGTAT
1 TATATATTATGATTTTAGTAT
82807775 TATATATTATGATTTTAGTA
1 TATATATTATGATTTTAGTA
82807795 AATTCATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
TATATATTATGATTTTAGTAT
Found at i:82807893 original size:61 final size:58
Alignment explanation
Indices: 82807828--82808019 Score: 145
Period size: 61 Copynumber: 3.3 Consensus size: 58
82807818 TTAAAAATTT
82807828 TATTAAATTATATATTTTTATCTAATTATATTTAATAATAATTTTAAATTATATTTTGTA
1 TATTAAATTATATATTTTTAT-TAATTATATTTAATAATAATTTTAAATTATATTTT-TA
* * * **
82807888 GTATTATA-TAT-TATGATTTTAGTAAATTCATA--TAAGAAT-A-TTTAATATTA-AGAATTT-
1 -TATTAAATTATATAT--TTTTA-TTAATT-ATATTTAATAATAATTTTAA-ATTATA-TTTTTA
82807945 TATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATA-TTTTA
1 TATTAAATTATATATTTTTATT-AATTATATTTAATAAT-A--ATTTTAAATTATATTTTTA
82808006 TATT--ATTATATATT
1 TATTAAATTATATATT
82808020 ATGATTTTAG
Statistics
Matches: 104, Mismatches: 9, Indels: 38
0.69 0.06 0.25
Matches are distributed among these distances:
55 4 0.04
56 15 0.14
57 9 0.09
58 10 0.10
59 20 0.19
60 12 0.12
61 24 0.23
62 10 0.10
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (58 bp):
TATTAAATTATATATTTTTATTAATTATATTTAATAATAATTTTAAATTATATTTTTA
Found at i:82807904 original size:117 final size:119
Alignment explanation
Indices: 82807769--82808077 Score: 552
Period size: 117 Copynumber: 2.6 Consensus size: 119
82807759 ATTATGATTT
*
82807769 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAAAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
*
82807834 ATTATATATTTTTATCT-AATTATATTTAATAAT-A-ATTTTAAATTATATTTTG
66 ATTATATATTTTTAT-TAAATTATATTTAATAATAATATTTTAAATTATATTTTA
82807886 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
82807951 ATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
66 ATTATATATTTTTATTAAATTATATTTAATAATAA-TATTTTAAATTATATTTTA
*
82808006 TATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
82808071 ATTATAT
66 ATTATAT
82808078 TTAATAATAA
Statistics
Matches: 185, Mismatches: 3, Indels: 5
0.96 0.02 0.03
Matches are distributed among these distances:
116 1 0.01
117 95 0.51
118 1 0.01
120 88 0.48
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (119 bp):
TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
ATTATATATTTTTATTAAATTATATTTAATAATAATATTTTAAATTATATTTTA
Found at i:82808191 original size:102 final size:102
Alignment explanation
Indices: 82807960--82808178 Score: 395
Period size: 102 Copynumber: 2.2 Consensus size: 102
82807950 AATTATATAT
* * *
82807960 TTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATATTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
*
82808025 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
82808062 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGA-
1 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
82808126 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
82808163 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
82808179 ATTTTAATTA
Statistics
Matches: 113, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
101 52 0.46
102 61 0.54
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (102 bp):
TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
Found at i:82808192 original size:14 final size:15
Alignment explanation
Indices: 82808166--82808205 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
82808156 TTAAGAATTT
*
82808166 TATTAAATT-ATATA
1 TATTTAATTAATATA
82808180 T-TTTAATTAATATA
1 TATTTAATTAATATA
82808194 TATTTAA-TAATA
1 TATTTAATTAATA
82808206 ATTATGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 12 0.52
15 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTAATTAATATA
Found at i:82808416 original size:44 final size:45
Alignment explanation
Indices: 82808353--82808449 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 45
82808343 CTATTACACC
*
82808353 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTAT
* * *
82808397 TCCATTACATTCAACCAAACAATTGAATTGCTATTACGTCTCTAT
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
*
82808442 TGCATTAC
1 TCCATTAC
82808450 GCCTCTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:82808450 original size:16 final size:16
Alignment explanation
Indices: 82808429--82808493 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
82808419 TTGAATTGCT
* *
82808429 ATTACGTCTCTATTGC
1 ATTACGCCTCTATTCC
82808445 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
82808461 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
82808477 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
82808493 A
1 A
82808494 ATACAACGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.22, C:0.34, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:82808986 original size:25 final size:26
Alignment explanation
Indices: 82808956--82809014 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
82808946 ATATACCGGA
* *
82808956 TAAATTAGGCTTATATGTTATTTTTT
1 TAAATTAGCCTTATAGGTTATTTTTT
* * *
82808982 T-AATTTGCCTTTTAGGTTTTTTTTT
1 TAAATTAGCCTTATAGGTTATTTTTT
82809007 TAAATTAG
1 TAAATTAG
82809015 AGATATAAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.24, C:0.05, G:0.12, T:0.59
Consensus pattern (26 bp):
TAAATTAGCCTTATAGGTTATTTTTT
Found at i:82813906 original size:19 final size:20
Alignment explanation
Indices: 82813867--82813905 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
82813857 TTTTCTTTAT
82813867 ATTTAT-AATTTTTTAAAAA
1 ATTTATAAATTTTTTAAAAA
82813886 ATTTATAAATTTTTTAAAAA
1 ATTTATAAATTTTTTAAAAA
82813906 TATAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTATAAATTTTTTAAAAA
Found at i:82818326 original size:37 final size:37
Alignment explanation
Indices: 82818276--82818354 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82818266 TTATTACGAA
* * *
82818276 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82818313 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82818350 GTCTT
1 GTCTT
82818355 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82818551 original size:47 final size:47
Alignment explanation
Indices: 82818473--82819048 Score: 927
Period size: 47 Copynumber: 12.1 Consensus size: 47
82818463 CCCTTCGGGA
* * * * * *
82818473 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82818520 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82818567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82818614 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82818663 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82818710 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82818757 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82818806 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
82818853 CTTATCATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82818900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82818949 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82818998 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82819045 CTTA
1 CTTA
82819049 CTATCATTTC
Statistics
Matches: 496, Mismatches: 27, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 310 0.62
49 186 0.38
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82818674 original size:96 final size:96
Alignment explanation
Indices: 82818473--82819048 Score: 925
Period size: 96 Copynumber: 6.0 Consensus size: 96
82818463 CCCTTCGGGA
* * * * * * * *
82818473 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82818536 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
82818567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82818632 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
82818663 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82818726 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
82818757 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82818822 --ACTTTCACGTTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
**
82818853 CTTATCATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82818918 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
82818949 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82819012 ACACTTTCACGTTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
82819045 CTTA
1 CTTA
82819049 CTATCATTTC
Statistics
Matches: 453, Mismatches: 19, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
94 155 0.34
96 247 0.55
98 51 0.11
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82818742 original size:143 final size:143
Alignment explanation
Indices: 82818473--82819048 Score: 976
Period size: 143 Copynumber: 4.0 Consensus size: 143
82818463 CCCTTCGGGA
* * * * * * * *
82818473 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
82818536 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82818601 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
82818614 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
82818679 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82818744 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
82818757 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* **
82818822 ACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCATGTATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82818887 TCGGCCATTAGGC
131 TCGGCCATTAGGC
82818900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
82818965 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
82819030 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
82819045 CTTA
1 CTTA
82819049 CTATCATTTC
Statistics
Matches: 410, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 9 0.02
142 1 0.00
143 315 0.77
145 85 0.21
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Done.