Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 259 of 318
Found at i:82822459 original size:40 final size:40
Alignment explanation
Indices: 82822414--82822570 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
82822404 CGAATACACG
* * * *
82822414 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* **
82822454 ACACCAGCACAAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
82822494 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
*
82822534 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGAT
82822571 TTAGTAACTC
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:82822595 original size:40 final size:41
Alignment explanation
Indices: 82822427--82822688 Score: 220
Period size: 40 Copynumber: 6.6 Consensus size: 41
82822417 CCAGCATGAT
* * * *
82822427 TGCTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAA
* **
82822467 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAA
* * **
82822507 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAA
* * * *
82822547 TGCTCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAA
* *
82822588 TGC-CTTCGG-GCTTAGCCCGGA-ATTAGT-ATCTCGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATA-TAGTCA-CTAGCACAAA
* ** * *
82822627 TGC-CTTCAGTTCTTAGTCCGGATATGGTCACTTAGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATATAGTCAC-TAGCACAAA
*
82822668 -GC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
82822689 CATCATTCGA
Statistics
Matches: 188, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 32 0.17
40 133 0.71
41 22 0.12
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (41 bp):
TGCTCTTCGGAACTTAGCCCGGATATAGTCACTAGCACAAA
Found at i:82823033 original size:29 final size:29
Alignment explanation
Indices: 82822994--82823072 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
82822984 CTTAATAATC
*
82822994 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
82823024 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
82823053 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82823073 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:82823117 original size:43 final size:43
Alignment explanation
Indices: 82823054--82823156 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
82823044 TGCATTTCAA
82823054 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
82823097 GTCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
82823140 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
82823157 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:82824951 original size:37 final size:37
Alignment explanation
Indices: 82824901--82824979 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82824891 TTATTACGAA
* * *
82824901 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82824938 GTCTTACCCGGACAAAATCCCCACACGCAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82824975 GTCTT
1 GTCTT
82824980 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82825184 original size:47 final size:47
Alignment explanation
Indices: 82825097--82825671 Score: 871
Period size: 47 Copynumber: 12.0 Consensus size: 47
82825087 CCCTTCGGGA
* * * * * * * *
82825097 CTTATCAAATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
82825144 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
*
82825191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
*
82825238 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
*
82825287 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
* *
82825336 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
82825383 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
* *
82825432 CTTATAACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
82825479 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
82825526 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
82825575 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
* *
82825624 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
82825671 C
1 C
82825672 CTACTATCAT
Statistics
Matches: 492, Mismatches: 30, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 258 0.52
49 234 0.48
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82825271 original size:49 final size:49
Alignment explanation
Indices: 82825108--82825671 Score: 918
Period size: 49 Copynumber: 11.8 Consensus size: 49
82825098 TTATCAAATT
* * * * * * *
82825108 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
82825157 TAT--ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
82825202 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
82825251 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
82825300 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
82825347 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
82825396 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
* *
82825445 TAT--ACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCAC--GTA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
82825490 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
82825539 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
82825588 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
82825635 TATACACTTTCACGTTCATCACATCGGCCATTAGGCC
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
82825672 CTACTATCAT
Statistics
Matches: 487, Mismatches: 18, Indels: 22
0.92 0.03 0.04
Matches are distributed among these distances:
45 11 0.02
47 230 0.47
49 246 0.51
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:82825295 original size:96 final size:97
Alignment explanation
Indices: 82825097--82825671 Score: 911
Period size: 96 Copynumber: 6.0 Consensus size: 97
82825087 CCCTTCGGGA
* * * * * * * *
82825097 CTTATCA-AATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT-
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
82825160 -ACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
*
82825191 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
82825255 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
82825287 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
82825350 ACACTTTCACATTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
82825383 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACATATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82825448 --ACTTTCACGTTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
82825479 CTTATCAC-GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
82825543 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
82825575 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82825638 ACACTTTCACGTTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
82825671 C
1 C
82825672 CTACTATCAT
Statistics
Matches: 451, Mismatches: 19, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
94 108 0.24
96 246 0.55
98 97 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (97 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82830528 original size:190 final size:191
Alignment explanation
Indices: 82830202--82830649 Score: 487
Period size: 190 Copynumber: 2.4 Consensus size: 191
82830192 CAGACCAGTG
* * * * ** *
82830202 AAATCACAAATCATGTAC-CTCTGAAGTTGCAATAGGTTGGATT-AAGTCACCATGTAGCATCTT
1 AAATCACAAATCCTATACACACTGAAGTTGCAATGGGACGGATTGAAGTCACCATGTAGAATCTT
* * *
82830265 ATCTCCATGAAATTTTAGTGGAGCAGATTGAAGCCACAAGTCTCATCTCCCTGAAGTTGCAGCGG
66 ATCTCCATGAAATTGTAGTGGAGCAGATTCAAGCCACAAGTCTCATCTCCCTGAAATTGCAGCGG
* *** * * *
82830330 AACAGACTAAAGATAGTGGATCTTACTTCCCTGATGTTACAGTGGAATAGATCAAAGCAAC
131 AACAGACTAAAAATAGAAAATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAAC
* *
82830391 AAATCACAAATCCTATACAC-CTGAAGTTGCAGTGGGACGGATTGAAGTTACCATGGT-GAATCT
1 AAATCACAAATCCTATACACACTGAAGTTGCAATGGGACGGATTGAAGTCACCAT-GTAGAATCT
* ** * * * *
82830454 TGTCTCTTTGAAGTTGTAGTGGAGTAGATTCAAGCCACAAGTC-CTATTTCCCTGAAATTGCAGT
65 TATCTCCATGAAATTGTAGTGGAGCAGATTCAAGCCACAAGTCTC-ATCTCCCTGAAATTGCAGC
* * * ** *
82830518 GGAGCAGACTAAAAATAGAAAATCTTATTTCCCTGAAGTTGCAGAGGAACAGATTTAAGCCAC
129 GGAACAGACTAAAAATAGAAAATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAAC
* * * * *
82830581 AAGTCACAAATCCTATA-ACACTGAAGTTGCATTGGGACGGATGGAAGTCATCATGGCA-AATCT
1 AAATCACAAATCCTATACACACTGAAGTTGCAATGGGACGGATTGAAGTCACCAT-GTAGAATCT
82830644 TATCTC
65 TATCTC
82830650 TCTAAAGTTG
Statistics
Matches: 215, Mismatches: 38, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
189 38 0.18
190 175 0.81
191 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (191 bp):
AAATCACAAATCCTATACACACTGAAGTTGCAATGGGACGGATTGAAGTCACCATGTAGAATCTT
ATCTCCATGAAATTGTAGTGGAGCAGATTCAAGCCACAAGTCTCATCTCCCTGAAATTGCAGCGG
AACAGACTAAAAATAGAAAATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAAC
Found at i:82830711 original size:190 final size:189
Alignment explanation
Indices: 82830284--82830713 Score: 461
Period size: 190 Copynumber: 2.3 Consensus size: 189
82830274 AAATTTTAGT
* * * * * * ***
82830284 GGAGCAGATTGAAGCCACAAGTCTCATCTCCCTGAAGTTGCAGCGGAACAGACTAAAGATAGTGG
1 GGAGCAGATTCAAGCCACAAGCCT-ATTTCCCTGAAGTTGCAGTGGAGCAGACTAAAAATAGAAA
* * *
82830349 ATCTTACTTCCCTGATGTTACAGTGGAATAGATCAAAGCAACAAATCACAAATCCTATACACCTG
65 ATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAACAAATCACAAATCCTATACACCTG
* * ** * * * * *
82830414 AAGTTGCAGTGGGACGGATTGAAGTTACCATGGTGAATCTTGTCTCTTTGAAGTTGTAGT
130 AAGTTGCAGTGGGACGGATGGAAGTCACCATGGCAAATCTTATCTCTCTAAAGTTGAAGC
* *
82830474 GGAGTAGATTCAAGCCACAAGTCCTATTTCCCTGAAATTGCAGTGGAGCAGACTAAAAATAGAAA
1 GGAGCAGATTCAAGCCACAAG-CCTATTTCCCTGAAGTTGCAGTGGAGCAGACTAAAAATAGAAA
* * ** * *
82830539 ATCTTATTTCCCTGAAGTTGCAGAGGAACAGATTTAAGCCACAAGTCACAAATCCTATA-ACACT
65 ATCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAACAAATCACAAATCCTATACAC-CT
* *
82830603 GAAGTTGCATTGGGACGGATGGAAGTCATCATGGCAAATCTTATCTCTCTAAAGTTGAAGC
129 GAAGTTGCAGTGGGACGGATGGAAGTCACCATGGCAAATCTTATCTCTCTAAAGTTGAAGC
* * * * *
82830664 GGGGCAGATTGAAGCTACCAA-CCTTATCTT-CTTGAAGTTGTAGTGGAGCA
1 GGAGCAGATTCAAGCCA-CAAGCC-TAT-TTCCCTGAAGTTGCAGTGGAGCA
82830714 AGTTGAAGTT
Statistics
Matches: 197, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
189 4 0.02
190 186 0.94
191 7 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (189 bp):
GGAGCAGATTCAAGCCACAAGCCTATTTCCCTGAAGTTGCAGTGGAGCAGACTAAAAATAGAAAA
TCTTACTTCCCTGAAGTTACAGAGGAACAGATCAAAGCAACAAATCACAAATCCTATACACCTGA
AGTTGCAGTGGGACGGATGGAAGTCACCATGGCAAATCTTATCTCTCTAAAGTTGAAGC
Found at i:82837077 original size:13 final size:13
Alignment explanation
Indices: 82837059--82837083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82837049 TACGTTGACA
82837059 TCGATATGTGATT
1 TCGATATGTGATT
82837072 TCGATATGTGAT
1 TCGATATGTGAT
82837084 GTGCGAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (13 bp):
TCGATATGTGATT
Found at i:82837089 original size:101 final size:101
Alignment explanation
Indices: 82836955--82837200 Score: 318
Period size: 101 Copynumber: 2.4 Consensus size: 101
82836945 GTATATGAGG
* * * * *
82836955 CATCGACATGTGAATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATGGGTGATTCCTA
1 CATCGATATGTG-ATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATAGGTGATTCCGA
*
82837020 TATATATGCGCGAGTAAGACCA-CGTTTAATACGTTGA
65 TATATATGCGCCAGTAAGACCATCGTTT-ATACGTTGA
*
82837057 CATCGATATGTGATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATATGTGATTCCGAT
1 CATCGATATGTGATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATAGGTGATTCCGAT
* * * * *
82837122 ATATGTGTGCCAGTAAGTCCATGGTTTATACGTTGG
66 ATATATGCGCCAGTAAGACCATCGTTTATACGTTGA
* *
82837158 CATCGATATGTGA-TTCTGATATATG-TGTGCGAGTAAGTCCATG
1 CATCGATATGTGATTTC-GATATGTGATGTGCGAGTAAGACCATG
82837201 TTTTATACGT
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
100 20 0.16
101 93 0.73
102 15 0.12
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (101 bp):
CATCGATATGTGATTTCGATATGTGATGTGCGAGTAAGACCATGACATCGATAGGTGATTCCGAT
ATATATGCGCCAGTAAGACCATCGTTTATACGTTGA
Found at i:82837122 original size:45 final size:44
Alignment explanation
Indices: 82837054--82837144 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
82837044 TTTAATACGT
* * *
82837054 TGACATCGATATGTGATTTCGATATGTGATGTGCGAGTAAGACCA
1 TGACATCGATATGTGATTCCGATATATG-TGTGCCAGTAAGACCA
*
82837099 TGACATCGATATGTGATTCCGATATATGTGTGCCAGTAAGTCCA
1 TGACATCGATATGTGATTCCGATATATGTGTGCCAGTAAGACCA
82837143 TG
1 TG
82837145 GTTTATACGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 16 0.38
45 26 0.62
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (44 bp):
TGACATCGATATGTGATTCCGATATATGTGTGCCAGTAAGACCA
Found at i:82837164 original size:56 final size:56
Alignment explanation
Indices: 82837102--82837249 Score: 233
Period size: 56 Copynumber: 2.6 Consensus size: 56
82837092 AAGACCATGA
* *
82837102 CATCGATATGTGATTCCGATATATGTGTGCCAGTAAGTCCATGGTTTATACGTTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGGTTTATACGTTGG
*
82837158 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGTTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGGTTTATACGTTGG
* * **
82837214 CATCAAAAAATGATTCTGATATATGTGTGCGAGTAA
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAA
82837250 AACCCTGTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 85 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.36
Consensus pattern (56 bp):
CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCATGGTTTATACGTTGG
Found at i:82839799 original size:48 final size:49
Alignment explanation
Indices: 82839685--82839814 Score: 154
Period size: 48 Copynumber: 2.7 Consensus size: 49
82839675 CGAGGCCAGC
* * * * *
82839685 GCCATGTCCCAGACATAGTCTTACACTAGCTCTCACATATCCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACACT-ACATATACGTACCGAT
* * **
82839735 GCCATGTCTCAAACATGGTCTTACACTAACACT-TTTATACGTACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAACACTACATATACGTACCGAT
*
82839783 GCCATGTCCCAGACATGGTCTTACACTGACAC
1 GCCATGTCCCAGACATGGTCTTACACTAACAC
82839815 ATCTCATTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 40 0.59
50 28 0.41
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTAACACTACATATACGTACCGAT
Found at i:82841874 original size:6 final size:5
Alignment explanation
Indices: 82841844--82841873 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
82841834 AATAATTATA
82841844 AATTT AATTT AATTT AATTT AATTAT AATT
1 AATTT AATTT AATTT AATTT AATT-T AATT
82841874 AACACAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
AATTT
Found at i:82848472 original size:93 final size:93
Alignment explanation
Indices: 82848365--82848535 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82848355 GCCCCTAAGT
* *
82848365 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82848430 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
82848458 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82848523 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82848536 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82848532 original size:46 final size:46
Alignment explanation
Indices: 82848360--82848532 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
82848350 AACCCGCCCC
* * *
82848360 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
82848406 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
82848454 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
82848499 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82848533 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82848989 original size:30 final size:30
Alignment explanation
Indices: 82848955--82849014 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82848945 ATTTAATACG
82848955 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82848985 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82849015 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82855997 original size:93 final size:93
Alignment explanation
Indices: 82855885--82856055 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82855875 GCCCCTAAGT
* *
82855885 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82855950 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
82855978 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82856043 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82856056 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82856052 original size:46 final size:46
Alignment explanation
Indices: 82855880--82856052 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
82855870 AACCCGCCCC
* * *
82855880 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
82855926 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
82855974 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
82856019 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82856053 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82856511 original size:30 final size:30
Alignment explanation
Indices: 82856477--82856536 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82856467 ATTTAATACG
82856477 AACTTTGGA-AAAATTACACTTTTGCCCCTA
1 AACTTT-GACAAAATTACACTTTTGCCCCTA
* *
82856507 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
82856537 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:82857981 original size:46 final size:46
Alignment explanation
Indices: 82857922--82858152 Score: 239
Period size: 46 Copynumber: 4.8 Consensus size: 46
82857912 TGACATGATA
* * *
82857922 CCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTG
* *
82857968 CCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTG
1 CCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTG
* * * *
82858014 CCATGCTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTG
* * *
82858060 CCATGGTATCTTTCAACCATGGTCTACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTATCTTT----CA------ACCATGGTCTTACTCATTTCATGTCACGTTG
*
82858116 CCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
82858153 ATCAGAGAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
45 4 0.02
46 110 0.68
50 2 0.01
52 2 0.01
56 44 0.27
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
CCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTG
Found at i:82858066 original size:30 final size:30
Alignment explanation
Indices: 82858030--82858122 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
82858020 TATCTTTCAA
82858030 CCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTCTTACACATTTCATATCAGGTTG
* * *
82858060 CCATGG---TA-TC-TTTCA-ACCATGGTCTA
1 CCATGGTCTTACACATTTCATATCA-GGT-TG
82858086 CCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTCTTACACATTTCATATCAGGTTG
82858116 CCATGGT
1 CCATGGT
82858123 ATCTTTCAAC
Statistics
Matches: 49, Mismatches: 6, Indels: 16
0.69 0.08 0.23
Matches are distributed among these distances:
24 3 0.06
25 8 0.16
26 8 0.16
27 2 0.04
29 2 0.04
30 15 0.31
31 8 0.16
32 3 0.06
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (30 bp):
CCATGGTCTTACACATTTCATATCAGGTTG
Found at i:82858096 original size:56 final size:56
Alignment explanation
Indices: 82858029--82858140 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
82858019 CTATCTTTCA
82858029 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCT
1 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCT
82858085 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCT
1 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCT
82858141 TACACATTTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (56 bp):
ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCT
Found at i:82876530 original size:13 final size:13
Alignment explanation
Indices: 82876514--82876538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82876504 TATATTTAGT
82876514 ATATAAATATTAA
1 ATATAAATATTAA
82876527 ATATAAATATTA
1 ATATAAATATTA
82876539 CCCCTTCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATAAATATTAA
Found at i:82881602 original size:15 final size:15
Alignment explanation
Indices: 82881584--82881613 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82881574 TTTAATTTGG
*
82881584 GGATTTATATTTGTT
1 GGATTTATATCTGTT
82881599 GGATTTATATCTGTT
1 GGATTTATATCTGTT
82881614 AGCAGTAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (15 bp):
GGATTTATATCTGTT
Found at i:82883996 original size:27 final size:26
Alignment explanation
Indices: 82883918--82884033 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
82883908 AGCATGGCTG
* * * *
82883918 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCATAGCCA
* *
82883944 CCAAATACAGATATTGTGGCACAGCCA
1 CCAGA-ACAGATATTGTGGCATAGCCA
*
82883971 CTAGAACAGATATTCGTGGCATAGCCA
1 CCAGAACAGATATT-GTGGCATAGCCA
*
82883998 CCAGAAACAGATATTTATGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCATAGCCA
82884026 CCAGAACA
1 CCAGAACA
82884034 CTTCCTCCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 13 0.17
27 38 0.50
28 23 0.30
29 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCATAGCCA
Found at i:82884032 original size:55 final size:53
Alignment explanation
Indices: 82883918--82884033 Score: 135
Period size: 55 Copynumber: 2.2 Consensus size: 53
82883908 AGCATGGCTG
* * *
82883918 CCAGAATAGATATTGTGACAGAGTCACCAAATACAGATATTGTGGCACAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTATGGCACAGCCA
* * * *
82883971 CTAGAACAGATATTCGTGGCATAGCCACCAGAA-ACAGATATTTATGGCATAGCCA
1 CCAGAACAGATATT-GTGACAGAGCCACCA-AATACAGATA-TTATGGCACAGCCA
82884026 CCAGAACA
1 CCAGAACA
82884034 CTTCCTCCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 12 0.23
54 19 0.37
55 21 0.40
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTATGGCACAGCCA
Found at i:82887918 original size:44 final size:46
Alignment explanation
Indices: 82887861--82887953 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
82887851 TACAATATCT
* * *
82887861 ATTCTATTCAACCAAATATA-AGAA-TACT-ATTACAACTCTATTTC
1 ATTCCATTCAACCAAACA-ACAGAATTACTGATTACAACTCTATTAC
*
82887905 ATTCCATTCAACCAAACAACAGAATTACTGATTACAGCTCTATTAC
1 ATTCCATTCAACCAAACAACAGAATTACTGATTACAACTCTATTAC
82887951 ATT
1 ATT
82887954 ACAACTCTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 20 0.48
45 4 0.10
46 17 0.40
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAACAGAATTACTGATTACAACTCTATTAC
Found at i:82887956 original size:16 final size:16
Alignment explanation
Indices: 82887935--82887972 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
82887925 AGAATTACTG
*
82887935 ATTACAGCTCTATTAC
1 ATTACAACTCTATTAC
*
82887951 ATTACAACTCTATTCC
1 ATTACAACTCTATTAC
82887967 ATTACA
1 ATTACA
82887973 TTCTTATTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTAC
Found at i:82888044 original size:13 final size:13
Alignment explanation
Indices: 82888021--82888086 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
82888011 CTTAAACCAA
*
82888021 ACTTTTTAAAAGT
1 ACTTTTCAAAAGT
* **
82888034 ACTTCTCAAAAAC
1 ACTTTTCAAAAGT
* *
82888047 ACTTTTCCAGAGT
1 ACTTTTCAAAAGT
* *
82888060 ACTTTTTAAAAGA
1 ACTTTTCAAAAGT
82888073 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
82888086 A
1 A
82888087 ATGCTAAACT
Statistics
Matches: 38, Mismatches: 15, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:82888086 original size:26 final size:25
Alignment explanation
Indices: 82888019--82888086 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
82888009 ATCTTAAACC
*
82888019 AAACTTTTTAAAAGTACTTCTCAAA
1 AAACTTTTCAAAAGTACTTCTCAAA
* * * *
82888044 AACACTTTTCCAGAGTACTTTTTAAA
1 AA-ACTTTTCAAAAGTACTTCTCAAA
82888070 AGAACTTTTCAAAAGTA
1 A-AACTTTTCAAAAGTA
82888087 ATGCTAAACT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.06
26 31 0.91
27 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.35
Consensus pattern (25 bp):
AAACTTTTCAAAAGTACTTCTCAAA
Found at i:82892176 original size:96 final size:92
Alignment explanation
Indices: 82891991--82892178 Score: 220
Period size: 96 Copynumber: 2.0 Consensus size: 92
82891981 TAACATGAAC
** *
82891991 CAAATCATAGAAGGAAAACTTTAACCTTTCTTTCAAAAGAAAAGTTATTTTTTTAATTGAAAATT
1 CAAATCATAGAAGGAAAACTTTAACCTTTCTTTCAAAAGAAAAGTTATTTTTTTAACCGAAAACT
* * *
82892056 ATACGTTATTTTCAGGAAATAAATTTT
66 AAACATTATTTTCAGAAAATAAATTTT
* *
82892083 CAAATCATAGAATGAAAACTTTAA-TTTTACTTTTAGCAAAA-AAAA-TTATTTTTTCTTTAACC
1 CAAATCATAGAAGGAAAACTTTAACCTTT-C-TTT--CAAAAGAAAAGTTA--TTTT-TTTAACC
82892145 GAAAACTAAACATTATTTTCAGAAAATAAATTTT
59 GAAAACTAAACATTATTTTCAGAAAATAAATTTT
82892179 TACTATTTTT
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
91 3 0.04
92 24 0.30
93 6 0.07
94 4 0.05
95 9 0.11
96 35 0.43
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (92 bp):
CAAATCATAGAAGGAAAACTTTAACCTTTCTTTCAAAAGAAAAGTTATTTTTTTAACCGAAAACT
AAACATTATTTTCAGAAAATAAATTTT
Found at i:82892522 original size:18 final size:18
Alignment explanation
Indices: 82892508--82892543 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
82892498 CCCAAATATT
*
82892508 ATTTATTTAA-TAAATTA
1 ATTTAATTAACTAAATTA
82892525 ATTTAATTAACTAAATTA
1 ATTTAATTAACTAAATTA
82892543 A
1 A
82892544 ATTATCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTAATTAACTAAATTA
Found at i:82894245 original size:42 final size:41
Alignment explanation
Indices: 82894198--82894312 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
82894188 AATACTCGAT
*
82894198 ATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT-TATA
1 ATCTCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCT-CA
* * *
82894240 ATCTCGCACATTAAGTGCCTTACATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCA
* * *
82894281 GTCTCGCACACTAAGTGTCATACATAGTCGAA
1 ATCTCGCACACTAAGTGCCATACATAGCCGAA
82894313 TTGTCGTCAA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 44 0.70
42 19 0.30
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCA
Found at i:82898289 original size:10 final size:10
Alignment explanation
Indices: 82898274--82898298 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
82898264 ATGTAGAACC
82898274 AAATGGATAG
1 AAATGGATAG
82898284 AAATGGATAG
1 AAATGGATAG
82898294 AAATG
1 AAATG
82898299 ATGAAGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.28, T:0.20
Consensus pattern (10 bp):
AAATGGATAG
Found at i:82916260 original size:80 final size:80
Alignment explanation
Indices: 82916140--82916325 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
82916130 AGTAACTCAT
* * *
82916140 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACACGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACACGCACAAATGCCTTC-GGATCTTAACCCG
*
82916204 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
* **
82916219 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACACGCACAAATGCCTTCGGATCTTAACCC
82916283 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
82916300 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
82916326 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 11 0.12
80 71 0.76
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACACGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:82916285 original size:40 final size:40
Alignment explanation
Indices: 82916142--82916325 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
82916132 TAACTCATAC
* * *
82916142 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACACGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
82916182 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
82916222 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
82916262 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
82916303 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82916326 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 104 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:82917465 original size:37 final size:37
Alignment explanation
Indices: 82917415--82917488 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
82917405 TTTCTTTTCT
82917415 TTAGCTCACGGCAATGGGGGGGACAAACAACTACACA
1 TTAGCTCACGGCAATGGGGGGGACAAACAACTACACA
82917452 TTAGCTCACGGCAATGGGGGGGACAAACAACTACACA
1 TTAGCTCACGGCAATGGGGGGGACAAACAACTACACA
82917489 CACATTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.27, T:0.14
Consensus pattern (37 bp):
TTAGCTCACGGCAATGGGGGGGACAAACAACTACACA
Found at i:82918234 original size:16 final size:16
Alignment explanation
Indices: 82918213--82918244 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82918203 TTTTGGTAAT
*
82918213 AAGTATCGATACTTTA
1 AAGTATCAATACTTTA
82918229 AAGTATCAATACTTTA
1 AAGTATCAATACTTTA
82918245 CCGAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (16 bp):
AAGTATCAATACTTTA
Found at i:82921436 original size:15 final size:17
Alignment explanation
Indices: 82921418--82921449 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
82921408 AGCATAATTT
82921418 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
82921433 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
82921450 CAAATATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:82927438 original size:33 final size:33
Alignment explanation
Indices: 82927401--82927470 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
82927391 TCTGTTTAGT
82927401 AACATTTGCAACAATTCTTATGGAAATTCTTAC
1 AACATTTGCAACAATTCTTATGGAAATTCTTAC
*
82927434 AACATTTGTAACAATTCTTATGGAAATTCTTAC
1 AACATTTGCAACAATTCTTATGGAAATTCTTAC
82927467 AACA
1 AACA
82927471 ACTCTGCACG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.36
Consensus pattern (33 bp):
AACATTTGCAACAATTCTTATGGAAATTCTTAC
Found at i:82930063 original size:39 final size:39
Alignment explanation
Indices: 82930009--82930087 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
82929999 GGTATTCGCA
82930009 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
1 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
82930048 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
1 ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
82930087 A
1 A
82930088 GAGATTTTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (39 bp):
ATTTTTTAGGACATGCGGGGGTTTTACCAATGGTTTATT
Found at i:82933108 original size:34 final size:35
Alignment explanation
Indices: 82933064--82933130 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
82933054 CTGTAAAATG
82933064 TTTTCCGTAAAATGAATT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
* *
82933098 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTT
82933131 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
Found at i:82934505 original size:27 final size:27
Alignment explanation
Indices: 82934475--82934544 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
82934465 AATAATCAAT
*
82934475 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
82934502 TCAATATCTAACCAATTCAAGACATATA
1 TCAATATCCAA-CAATTCAAAACATATA
*
82934530 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
82934545 CTAAAATCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:82938814 original size:6 final size:6
Alignment explanation
Indices: 82938803--82938833 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
82938793 AATATTTCCC
*
82938803 ACAGAA ACAGAA ACAGAA ACAAAA ACAGAA A
1 ACAGAA ACAGAA ACAGAA ACAGAA ACAGAA A
82938834 ATACAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.71, C:0.16, G:0.13, T:0.00
Consensus pattern (6 bp):
ACAGAA
Found at i:82943527 original size:14 final size:15
Alignment explanation
Indices: 82943478--82943527 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
82943468 GTATCTTGGG
*
82943478 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
82943493 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
82943508 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
82943522 TTTCTT
1 TTTCTT
82943528 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 9 0.29
15 22 0.71
ACGTcount: A:0.10, C:0.16, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:82948424 original size:14 final size:14
Alignment explanation
Indices: 82948407--82948464 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
82948397 TAAAAAAAGT
82948407 AATTGAATAAAATA
1 AATTGAATAAAATA
*
82948421 AATTGTAA-AAAATGT
1 AATTG-AATAAAAT-A
82948436 AATTGAATAAAATA
1 AATTGAATAAAATA
82948450 AATT-AAGTAAAATA
1 AATTGAA-TAAAATA
82948464 A
1 A
82948465 CTAAAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 2 0.05
14 24 0.63
15 12 0.32
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (14 bp):
AATTGAATAAAATA
Found at i:82948429 original size:29 final size:29
Alignment explanation
Indices: 82948396--82948453 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
82948386 TAAGGTTAAG
82948396 GTAAAAAAAGTAATTGAATAAAATAAATT
1 GTAAAAAAAGTAATTGAATAAAATAAATT
*
82948425 GTAAAAAATGTAATTGAATAAAATAAATT
1 GTAAAAAAAGTAATTGAATAAAATAAATT
82948454 AAGTAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.29
Consensus pattern (29 bp):
GTAAAAAAAGTAATTGAATAAAATAAATT
Found at i:82948447 original size:15 final size:15
Alignment explanation
Indices: 82948400--82948448 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
82948390 GTTAAGGTAA
*
82948400 AAAAAGTAATTGAAT
1 AAAATGTAATTGAAT
*
82948415 AAAAT-AAATTGTAA-
1 AAAATGTAATTG-AAT
82948429 AAAATGTAATTGAAT
1 AAAATGTAATTGAAT
82948444 AAAAT
1 AAAAT
82948449 AAATTAAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (15 bp):
AAAATGTAATTGAAT
Found at i:82953364 original size:17 final size:18
Alignment explanation
Indices: 82953339--82953382 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
82953329 TTACATGGGT
*
82953339 AACAGTCCTCGATCTC-A
1 AACAATCCTCGATCTCAA
82953356 AACAATCCTCGATCTCAA
1 AACAATCCTCGATCTCAA
82953374 AACAATCCT
1 AACAATCCT
82953383 TATATCAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.36, C:0.34, G:0.07, T:0.23
Consensus pattern (18 bp):
AACAATCCTCGATCTCAA
Found at i:82957241 original size:22 final size:22
Alignment explanation
Indices: 82957216--82957266 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
82957206 ATGTTGTTAC
82957216 TTTTATTCTAT-TTTAAGAC-TAT
1 TTTTATT-TATCTTTAAG-CTTAT
*
82957238 TTTTATTTTTCTTTAAGCTTAT
1 TTTTATTTATCTTTAAGCTTAT
82957260 TTTTATT
1 TTTTATT
82957267 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.22, C:0.08, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTATTTATCTTTAAGCTTAT
Found at i:82958974 original size:40 final size:40
Alignment explanation
Indices: 82958921--82959000 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
82958911 AAGAATTTAT
82958921 TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
1 TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
* *
82958961 TTTGATTATGAGTTGAGGATTTTTTCTTGAGGACAAGCAA
1 TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
82959001 ATGCTTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.38
Consensus pattern (40 bp):
TTTGATTACGAGTTGAGGATTTTTGCTTGAGGACAAGCAA
Found at i:82969093 original size:40 final size:40
Alignment explanation
Indices: 82969009--82969193 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
82968999 TCGAATGATG
* *
82969009 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
82969048 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82969089 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82969128 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
82969167 AACCGAGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82969194 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 80 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82969145 original size:79 final size:81
Alignment explanation
Indices: 82969009--82969191 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
82968999 TCGAATGATG
* *
82969009 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
82969073 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
82969088 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
82969150 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
82969168 ACCGAGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82969192 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:82969215 original size:79 final size:77
Alignment explanation
Indices: 82969043--82969226 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 77
82969033 GTGCTAAGTG
* * *
82969043 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGG
**
82969108 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* *
82969122 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAA
*
82969186 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
82969201 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
82969227 TACGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:82977181 original size:40 final size:40
Alignment explanation
Indices: 82977097--82977281 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
82977087 TCGAATGATG
* *
82977097 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
82977136 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82977177 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82977216 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82977255 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82977282 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82977233 original size:79 final size:81
Alignment explanation
Indices: 82977097--82977279 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
82977087 TCGAATGATG
* *
82977097 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
82977161 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
82977176 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
82977238 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
82977256 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82977280 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:82977303 original size:79 final size:79
Alignment explanation
Indices: 82977098--82977304 Score: 237
Period size: 79 Copynumber: 2.6 Consensus size: 79
82977088 CGAATGATGT
* *
82977098 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
82977161 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* *
82977178 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
82977240 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
82977257 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
82977305 ATTCTGAAGG
Statistics
Matches: 109, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
78 3 0.03
79 63 0.58
80 43 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:82984167 original size:30 final size:30
Alignment explanation
Indices: 82984131--82984190 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
82984121 ACTTAGAAAG
82984131 AGCTCAATTTGTGATAATATTGATGGATCA
1 AGCTCAATTTGTGATAATATTGATGGATCA
*
82984161 AGCTCAATTTGTGATAATGTTGATGGATCA
1 AGCTCAATTTGTGATAATATTGATGGATCA
82984191 GGCTGTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (30 bp):
AGCTCAATTTGTGATAATATTGATGGATCA
Found at i:82993834 original size:93 final size:93
Alignment explanation
Indices: 82993721--82993892 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
82993711 CGCCCATAAG
* * *
82993721 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82993786 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
82993814 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82993879 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82993893 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82993889 original size:46 final size:46
Alignment explanation
Indices: 82993714--82993889 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82993704 TGTAACCCGC
* * * *
82993714 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
82993760 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82993810 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82993853 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82993890 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82999575 original size:58 final size:57
Alignment explanation
Indices: 82999502--82999610 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
82999492 TGAATGTGAC
* * *
82999502 TGGGCCTAACTGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGTTGATT
1 TGGGCCTAACTGGCCATATAAATATGA-TTGGGCCTAATAGGCCAGATACAGTTGATT
* *
82999560 TGGGCCTAA-TGGGCCATATGAATATGATTGGGCTTAATAGGCCAGATACAG
1 TGGGCCTAACT-GGCCATATAAATATGATTGGGCCTAATAGGCCAGATACAG
82999611 GTATGTGAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACTGGCCATATAAATATGATTGGGCCTAATAGGCCAGATACAGTTGATT
Found at i:82999602 original size:28 final size:29
Alignment explanation
Indices: 82999490--82999603 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
82999480 TGAGCATGAT
*
82999490 TATGAATGTGA-CTGGGCCTAACT-GGCCA
1 TATGAATGTGATTTGGGCCTAA-TGGGCCA
*
82999518 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
82999547 TAT-ACA-GTTGATTTGGGCCTAATGGGCCA
1 TATGA-ATG-TGATTTGGGCCTAATGGGCCA
* * *
82999576 TATGAATATGA-TTGGGCTTAATAGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
82999604 GATACAGGTA
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:83005684 original size:17 final size:17
Alignment explanation
Indices: 83005658--83005693 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
83005648 ATCCTATGTT
*
83005658 TTATATATCAATCAAAA
1 TTATAAATCAATCAAAA
*
83005675 TTATAAATCAATTAAAA
1 TTATAAATCAATCAAAA
83005692 TT
1 TT
83005694 TATCCTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (17 bp):
TTATAAATCAATCAAAA
Found at i:83006199 original size:13 final size:13
Alignment explanation
Indices: 83006181--83006231 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
83006171 TAAAATCTGC
83006181 TAAAAAATAAAAA
1 TAAAAAATAAAAA
* *
83006194 TAAAAATTAAAAT
1 TAAAAAATAAAAA
83006207 TAAAAACAT-AAAA
1 TAAAAA-ATAAAAA
83006220 TAATAAAATAAA
1 TAA-AAAATAAA
83006232 TATTTCTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 25 0.81
14 6 0.19
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:83006232 original size:26 final size:26
Alignment explanation
Indices: 83006181--83006231 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
83006171 TAAAATCTGC
*
83006181 TAAAAAATAAAAATAAAAATTAAAAT
1 TAAAAAATAAAAATAAAAAATAAAAT
83006207 TAAAAACAT-AAAATAATAAAATAAA
1 TAAAAA-ATAAAAATAA-AAAATAAA
83006232 TATTTCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (26 bp):
TAAAAAATAAAAATAAAAAATAAAAT
Found at i:83009840 original size:13 final size:13
Alignment explanation
Indices: 83009802--83009846 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
83009792 ATAATAATAT
83009802 AATAAAATAAAG-
1 AATAAAATAAAGA
*
83009814 AAT-GAATAAAAGA
1 AATAAAAT-AAAGA
83009827 AATAAAATAAAGA
1 AATAAAATAAAGA
83009840 AATAAAA
1 AATAAAA
83009847 GAATGAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 3 0.11
12 7 0.25
13 15 0.54
14 3 0.11
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:83011761 original size:20 final size:20
Alignment explanation
Indices: 83011712--83011764 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
83011702 ATGGCTATAG
* * *
83011712 CACACGGGCATGTTCCAGGC
1 CACACGGGCGTGTCCCAAGC
*
83011732 CACACGGGCGTGTCCCAAGT
1 CACACGGGCGTGTCCCAAGC
83011752 CACACGGGCGTGT
1 CACACGGGCGTGT
83011765 GCCCCTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15
Consensus pattern (20 bp):
CACACGGGCGTGTCCCAAGC
Found at i:83015561 original size:29 final size:29
Alignment explanation
Indices: 83015525--83015609 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
83015515 TGAATGTGAC
83015525 TGGGCCTAATGGGCCATATACAGGTGAT-T
1 TGGGCCTAATGGGCCATATACAGGT-ATGT
83015554 TGGGCCTAATGGGCCATATGA-A--TATGT
1 TGGGCCTAATGGGCCATAT-ACAGGTATGT
* *
83015581 TGGGCTTAATGGGCCAGATACAGGTATGT
1 TGGGCCTAATGGGCCATATACAGGTATGT
83015610 GAAATTGTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
26 3 0.06
27 20 0.41
29 25 0.51
30 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAGGTATGT
Found at i:83030599 original size:46 final size:46
Alignment explanation
Indices: 83030532--83030796 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 46
83030522 TGTAACCCGC
* *
83030532 CCATAAGCAAACTCGGACTCAACTCAACGAGTTCGTACGTTCATAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
* * *
83030578 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G-T-AC--GTTCACAT
* * * *
83030628 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
* * * * *
83030671 CCATAAGTGAACTTGGACTCAACTTAACGAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCG-T-AC--GTTCACAT
* * * *
83030721 -C-TCA-CGAACTCGGACCCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
* *
83030764 CCAAAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
83030797 AGGATGCCCA
Statistics
Matches: 167, Mismatches: 34, Indels: 36
0.70 0.14 0.15
Matches are distributed among these distances:
42 6 0.04
43 6 0.04
44 4 0.02
45 3 0.02
46 79 0.47
47 48 0.29
48 5 0.03
49 4 0.02
50 6 0.04
51 6 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGTACGTTCACAT
Found at i:83030748 original size:47 final size:47
Alignment explanation
Indices: 83030586--83030748 Score: 158
Period size: 47 Copynumber: 3.5 Consensus size: 47
83030576 ATCCATAAGT
**
83030586 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
* * * *
83030633 GAACTCGGACTCAACTCAATGAG-TTCGGA---C--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTT-ACAT-C-TCA-C
* *
83030679 GAACTTGGACTCAACTTAACGAGCTTGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
*
83030726 GAACTCGGACCCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
83030749 TTCGGACGTT
Statistics
Matches: 90, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 24 0.27
47 46 0.51
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCAC
Found at i:83030802 original size:93 final size:94
Alignment explanation
Indices: 83030541--83030804 Score: 426
Period size: 93 Copynumber: 2.8 Consensus size: 94
83030531 CCCATAAGCA
* **
83030541 AACTCGGACTCAACTCAACGAGTTCGTACGTTCATATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
83030606 GAGCTCA-GATGCCTAGTTACATCTCACG
66 GAGCTTAGGATGCCTAGTTACATCTCACG
* * *
83030634 AACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTTAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
83030699 GAGCTT-GGATGCCTAGTTACATCTCACG
66 GAGCTTAGGATGCCTAGTTACATCTCACG
* *
83030727 AACTCGGACCCAACTCAACGAGTTCGGACGTTCGCATCCAAAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
83030792 GAG-TTAGGATGCC
66 GAGCTTAGGATGCC
83030805 CAAATATCCA
Statistics
Matches: 157, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
92 2 0.01
93 155 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (94 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTTAGGATGCCTAGTTACATCTCACG
Found at i:83041696 original size:41 final size:41
Alignment explanation
Indices: 83041651--83041728 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
83041641 ATAAGAACAA
83041651 ACCACAGAGAGTAAGAACGCAAGAGGGAGAGAAATTTGAGT
1 ACCACAGAGAGTAAGAACGCAAGAGGGAGAGAAATTTGAGT
83041692 ACCACAGAGAGTAAGAACGCAAGAGGGAGAGAAATTT
1 ACCACAGAGAGTAAGAACGCAAGAGGGAGAGAAATTT
83041729 CAGTGAATGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.45, C:0.13, G:0.31, T:0.12
Consensus pattern (41 bp):
ACCACAGAGAGTAAGAACGCAAGAGGGAGAGAAATTTGAGT
Found at i:83041912 original size:22 final size:21
Alignment explanation
Indices: 83041882--83041947 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
83041872 TACAAATTAA
83041882 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
83041904 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
83041925 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
83041944 ATCT
1 ATCT
83041948 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:83041934 original size:19 final size:19
Alignment explanation
Indices: 83041899--83041996 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
83041889 AGATTACAAG
83041899 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
83041920 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
83041939 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
83041956 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
83041975 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
83041994 ATC
1 ATC
83041997 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:83041963 original size:36 final size:37
Alignment explanation
Indices: 83041899--83041996 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
83041889 AGATTACAAG
83041899 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
83041939 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
83041975 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
83041997 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:83042669 original size:87 final size:89
Alignment explanation
Indices: 83042576--83042780 Score: 263
Period size: 87 Copynumber: 2.3 Consensus size: 89
83042566 GCACAGGAAT
* * * *
83042576 GTCAGATCTGCTATGTCTTCAATCTGTTCCCTGTAAACACAGGGATGCCAAATCATCTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACAAAAGGATGCCAAATCATCTTGGATCT
* *
83042641 GCTTCAGCGT--AAACAC-CTGAAG
66 GCTTCAACGTGAAAATACTC-GAAG
* * * *
83042663 GTCAGATCTGTTATGTCTTCGATTTGCTCCTTGTAAACAAAAGGATGCTAAATCATCTTGGATCT
1 GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACAAAAGGATGCCAAATCATCTTGGATCT
* * *
83042728 GCTTTAATGTGAAAATATTCGAAG
66 GCTTCAACGTGAAAATACTCGAAG
83042752 GTCAGATCTGCTATGTCTTCGATCTGCTC
1 GTCAGATCTGCTATGTCTTCGATCTGCTC
83042781 TCCGTCGAAT
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
87 64 0.64
89 35 0.35
90 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (89 bp):
GTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTAAACAAAAGGATGCCAAATCATCTTGGATCT
GCTTCAACGTGAAAATACTCGAAG
Found at i:83043124 original size:41 final size:40
Alignment explanation
Indices: 83043079--83043215 Score: 117
Period size: 41 Copynumber: 3.4 Consensus size: 40
83043069 CCCTGTTACT
*
83043079 CTACTACTTAGGAGATTAAGGCGAGTCTTCGATCTGCTCTA
1 CTACTGCTTAGGAGATTAAGGCGAGTCTT-GATCTGCTCTA
*
83043120 CTACTGCTTAGGGAGA-TAA---GA-TCTGTGAACCTG-T-TA
1 CTACTGCTTA-GGAGATTAAGGCGAGTCT-TG-ATCTGCTCTA
* *
83043156 CCCTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCA
1 --CTACTGCTTAGGAGATTAAGGCGAGTC-TTGATCTGCTCTA
83043199 CTACTGCTTAGAGAGAT
1 CTACTGCTTAG-GAGAT
83043216 AAGATCTGCA
Statistics
Matches: 76, Mismatches: 6, Indels: 27
0.70 0.06 0.25
Matches are distributed among these distances:
36 2 0.03
37 9 0.12
38 20 0.26
41 29 0.38
42 14 0.18
43 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (40 bp):
CTACTGCTTAGGAGATTAAGGCGAGTCTTGATCTGCTCTA
Found at i:83043267 original size:84 final size:84
Alignment explanation
Indices: 83042899--83043347 Score: 569
Period size: 84 Copynumber: 5.4 Consensus size: 84
83042889 TCTGCTATCC
* * *
83042899 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGTGCA-TCTTCGATCTACTCCACTACTGCTT
1 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTT
*
83042963 AAGGAGATAAGATCTGCAAA
65 AGGGAGATAAGATCTGCAAA
* * * * *
83042983 TTTAACCTGTTACCCAATTGCTTAGGGGATTAAGGCGAGTCGTCATCGATCTGCTCCGCTACTAC
1 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGC
*
83043048 TTAGGGAGATAAGATTTGC---
63 TTAGGGAGATAAGATCTGCAAA
* * * * *
83043067 --GACCCTGTTACTCTACTACTTAGGAGATTAAGGCGAGTCTTCGATCTGCTCTACTACTGCTTA
1 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
83043130 GGGAGATAAGATCTG----
66 GGGAGATAAGATCTGCAAA
* * *
83043145 -TGAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
83043209 GAGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* * *
83043228 TTTAACCTGTTACCCTACCACTTAGGGGATTAAAGCGAGTCTTCGATCAGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
83043293 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAA
* *
83043312 TTTAACCTGTTACCCTACTGCTTAAGGGATTAAGGC
1 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGC
83043348 ACTGAATTTT
Statistics
Matches: 318, Mismatches: 37, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
79 105 0.33
81 1 0.00
82 32 0.10
83 1 0.00
84 144 0.45
85 1 0.00
87 34 0.11
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAA
Found at i:83043332 original size:43 final size:43
Alignment explanation
Indices: 83043199--83043340 Score: 116
Period size: 43 Copynumber: 3.3 Consensus size: 43
83043189 ATCTGCTCCA
*
83043199 CTACTGCTTAGAGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
** * * * * * *
83043242 CTACCACTTAGGG-GATTAA-A---GCGAGTCTTCGATCAGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
83043282 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
83043326 CTACTGCTTAAGGGA
1 CTACTGCTT-AGGGA
83043341 TTAAGGCACT
Statistics
Matches: 71, Mismatches: 17, Indels: 21
0.65 0.16 0.19
Matches are distributed among these distances:
39 4 0.06
40 4 0.06
41 18 0.25
42 6 0.08
43 26 0.37
44 9 0.13
45 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:83044326 original size:18 final size:18
Alignment explanation
Indices: 83044300--83044346 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
83044290 CTCTCCATTT
*
83044300 TTTTCTTTTTTCTTTTTA
1 TTTTCTTTTTTCCTTTTA
* *
83044318 TTTTATTTTTTCCTTTTC
1 TTTTCTTTTTTCCTTTTA
83044336 TTTTCTTTTTT
1 TTTTCTTTTTT
83044347 TCATTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTCTTTTTTCCTTTTA
Found at i:83044357 original size:18 final size:17
Alignment explanation
Indices: 83044297--83044357 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 17
83044287 GGCCTCTCCA
83044297 TTTTTTTC-TTTTTTCT
1 TTTTTTTCTTTTTTTCT
83044313 TTTTATTT-TATTTTTTCCT
1 TTTT-TTTCT-TTTTTT-CT
83044332 TTTCTTTTCTTTTTTTCAT
1 TTT-TTTTCTTTTTTTC-T
83044351 TTTTTTT
1 TTTTTTT
83044358 TTGAAATAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
16 4 0.11
17 3 0.08
18 11 0.29
19 18 0.47
20 2 0.05
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTTCTTTTTTTCT
Found at i:83050007 original size:22 final size:21
Alignment explanation
Indices: 83049977--83050023 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
83049967 TACAAATTAA
83049977 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
83049999 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
83050020 ATCT
1 ATCT
83050024 AAAATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:83050032 original size:19 final size:19
Alignment explanation
Indices: 83049994--83050091 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
83049984 AGATTACAAG
83049994 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
83050015 ATCATATCTAAAATTGCAT
1 ATCATATCTAAGATTGCAT
*
83050034 ATGATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
83050051 ATCATATCTAAGATTGCAA
1 ATCATATCTAAGATTGCAT
83050070 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
83050089 ATC
1 ATC
83050092 CTTATCGTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
17 16 0.23
19 44 0.64
20 1 0.01
21 8 0.12
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:83050056 original size:36 final size:37
Alignment explanation
Indices: 83049994--83050091 Score: 126
Period size: 36 Copynumber: 2.6 Consensus size: 37
83049984 AGATTACAAG
*
83049994 ATCATATCTTCAAGATTGCATATCATATCTAAAATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAAATTGCAA
* *
83050034 ATGATATCTAAGATTG-TATCATATCTAAGATTGCAA
1 ATCATATCTAAGATTGATATCATATCTAAAATTGCAA
83050070 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
83050092 CTTATCGTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
36 33 0.63
38 11 0.21
39 1 0.02
40 7 0.13
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAAATTGCAA
Found at i:83057034 original size:27 final size:27
Alignment explanation
Indices: 83056910--83057034 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
83056900 TTAGTTTACC
** *
83056910 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCCAAATACCCTCAGTTTGTA
* * *
83056936 AAATTA-CCAAAGTACCCCCGGTTTATA
1 AAATTACCCAAA-TACCCTCAGTTTGTA
*
83056963 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCCAAATACCCTCAG-TTTGTA
* *
83056990 AAATTACCAAAATACCCTCAGTTTGCA
1 AAATTACCCAAATACCCTCAGTTTGTA
**
83057017 AAATTACTGAAATACCCT
1 AAATTACCCAAATACCCT
83057035 TGACATGTAA
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
25 3 0.04
26 15 0.18
27 58 0.71
28 6 0.07
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCAGTTTGTA
Found at i:83057078 original size:54 final size:54
Alignment explanation
Indices: 83056910--83057079 Score: 164
Period size: 54 Copynumber: 3.2 Consensus size: 54
83056900 TTAGTTTACC
* ** * * *
83056910 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAATACCCTCGATTTATA
** * ** **
83056963 AAATTACCCAAATATCCTCGATTTGTAAAATTACCAAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAATACCCTCGA-TTTATA
* * *
83057017 AAATTACTGAAATACCCTTGACATGTAAAATTATCAAAAAACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAATACCCTCGATTTATA
*
83057071 GAATTACTG
1 AAATTACTG
83057080 TTTTACCCTC
Statistics
Matches: 93, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
53 14 0.15
54 78 0.84
55 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGACATGTAAAATTACCAAAATACCCTCGATTTATA
Found at i:83057087 original size:27 final size:27
Alignment explanation
Indices: 83057057--83057501 Score: 559
Period size: 27 Copynumber: 16.5 Consensus size: 27
83057047 TTATCAAAAA
* * *
83057057 ACCCTCGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057084 ACCCTCGATTTATAAAATTATTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057111 ACCCTCGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057138 ACCCTCGATTTGCAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* *
83057165 ACCCTTGATTTACAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057192 AACTTCGATTTACAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
*
83057219 ACCCTCGATTTACAGAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * * ** *
83057246 ACCCTCAATTTATAGAATTACCCTCTT
1 ACCCTCGATTTACAAAATTACTATTTT
83057273 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057300 ACCCTCAATTTATAGAATTA-TCATTTT
1 ACCCTCGATTTACAAAATTACT-ATTTT
83057327 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057354 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
83057381 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
83057408 ACCCTCGATTTACAAAATTACTATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
* * *
83057435 ACCCTCGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACTATTTT
*
83057462 ACCCTCGATTTACAAAATTATTATTTT
1 ACCCTCGATTTACAAAATTACTATTTT
*
83057489 ACCCTCAATTTAC
1 ACCCTCGATTTAC
83057502 GTTTTACCCT
Statistics
Matches: 369, Mismatches: 47, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 367 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
ACCCTCGATTTACAAAATTACTATTTT
Found at i:83057087 original size:54 final size:54
Alignment explanation
Indices: 83057029--83057145 Score: 144
Period size: 54 Copynumber: 2.2 Consensus size: 54
83057019 ATTACTGAAA
* *
83057029 TACCCTTGACATGTAAAATTATCAAAAAACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGACATATAAAATTATCAAAAAACCCTCGATTTATAGAATTACTGTTT
** ******
83057083 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGACATATAAAATTATCAAAAAACCCTCGATTTATAGAATTACTGTTT
83057137 TACCCTCGA
1 TACCCTCGA
83057146 TTTGCAGAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGACATATAAAATTATCAAAAAACCCTCGATTTATAGAATTACTGTTT
Found at i:83057114 original size:81 final size:81
Alignment explanation
Indices: 83057002--83057501 Score: 322
Period size: 81 Copynumber: 6.2 Consensus size: 81
83056992 ATTACCAAAA
* *** * *
83057002 TACCCTC-AGTTTGCAAAATTACTGAAATACCCTTGACATGTAAAATTA-TCAAAAAACCCTCGA
1 TACCCTCGA-TTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACT-AAAAAACCCTCGA
*
83057065 TTTATAGAATTACTGTTT
64 TTTACAGAATTACTGTTT
* * ** * *****
83057083 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACTAAAAAACCCTCGATT
*
83057148 TGCAGAATTACTGTTT
66 TACAGAATTACTGTTT
* * * ** * *****
83057164 TACCCTTGATTTACAAAATTACTGTTTTAACTTCGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACTAAAAAACCCTCGATT
*
83057229 TACAGAATTACTATTT
66 TACAGAATTACTGTTT
* * * ** * ** * **** *
83057245 TACCCTCAATTTATAGAATTACCCTCTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACTAAAAAACCCTCGATT
* *
83057310 TATAGAATTA-TCATTT
66 TACAGAATTACT-GTTT
* ** * * ****
83057326 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACTAAAAAACCCTCGATT
* *
83057391 TACAAAATTACTATTT
66 TACAGAATTACTGTTT
* ** * *****
83057407 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACTAAAAAACCCTCGATT
* * *
83057472 TACAAAATTATTATTT
66 TACAGAATTACTGTTT
*
83057488 TACCCTCAATTTAC
1 TACCCTCGATTTAC
83057502 GTTTTACCCT
Statistics
Matches: 360, Mismatches: 55, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.00
81 356 0.99
82 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGACATATAAAATTACTAAAAAACCCTCGATT
TACAGAATTACTGTTT
Found at i:83058077 original size:31 final size:31
Alignment explanation
Indices: 83058042--83058118 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
83058032 TTGCATTCAC
* * * *
83058042 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
83058073 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
83058104 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
83058119 GTGATTCAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:83058081 original size:6 final size:6
Alignment explanation
Indices: 83058042--83058172 Score: 63
Period size: 6 Copynumber: 21.3 Consensus size: 6
83058032 TTGCATTCAC
* * * *
83058042 ATTCTG ATTTTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
83058091 -TCACCTA ATTCTG ATTCTG ATTCTG ATTGTG ATTCAG -TCACCTG ATCCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
83058141 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
83058173 AATGTTTCTT
Statistics
Matches: 94, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 79 0.84
7 7 0.07
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:83058161 original size:37 final size:37
Alignment explanation
Indices: 83058063--83058162 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 37
83058053 GATTTTGTTA
* * *
83058063 CCTGATACTGATTCTGATTCTAATTCTGTCACCTAAT
1 CCTGATTCTGATTCTGATTCTGATTCAGTCACCTAAT
* * *
83058100 TCTGATTCTGATTCTGATTGTGATTCAGTCACCTGAT
1 CCTGATTCTGATTCTGATTCTGATTCAGTCACCTAAT
* *
83058137 CCTGATTCTGATTCTCATTTTGATTC
1 CCTGATTCTGATTCTGATTCTGATTC
83058163 TAGTTCTGAT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (37 bp):
CCTGATTCTGATTCTGATTCTGATTCAGTCACCTAAT
Found at i:83065780 original size:44 final size:43
Alignment explanation
Indices: 83065709--83065856 Score: 144
Period size: 44 Copynumber: 3.4 Consensus size: 43
83065699 TATATGTTAT
* *
83065709 CGTGTAAGACCACGACTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATTT-TGATTTA
* * *
83065753 CGTGTAAGACCAGGTCTGGCACATTGGCATCG-TATATGATTTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TTTGA-TTTA
* *
83065797 --TGTAAGACC-CTCTCTGGGACAGTGGCATCGATGTTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TTTGATTTA
*
83065838 CATGTAAGACCACGTCTGG
1 CGTGTAAGACCACGTCTGG
83065857 AATGTTGGCA
Statistics
Matches: 85, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
41 3 0.04
42 25 0.29
43 23 0.27
44 34 0.40
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTTGATTTA
Found at i:83065866 original size:43 final size:42
Alignment explanation
Indices: 83065711--83065867 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 42
83065701 TATGTTATCG
* * *
83065711 TGTAAGACCACGACTGGGACGTTGGCATCGATTTGTGATTTACG
1 TGTAAGACCACGTCTGGAACGTTGGCATCGATTT-TGA-TTACA
* * * * **
83065755 TGTAAGACCAGGTCTGGCACATTGGCATCG-TATATGATTTTA
1 TGTAAGACCACGTCTGGAACGTTGGCATCGAT-TTTGATTACA
* *
83065797 TGTAAGACC-CTCTCTGGGACAG-TGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGAAC-GTTGGCATCGAT-TTTGATTACA
*
83065840 TGTAAGACCACGTCTGGAATGTTGGCAT
1 TGTAAGACCACGTCTGGAACGTTGGCAT
83065868 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 27 0.31
43 33 0.38
44 28 0.32
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGAACGTTGGCATCGATTTTGATTACA
Found at i:83066770 original size:57 final size:57
Alignment explanation
Indices: 83066674--83066787 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
83066664 TTTTTCCTAT
* *
83066674 GTTTATAGATTTTTAGAGATCTGCTCAGATTTGAACTCGATGGGTACGTCATCACAC
1 GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
*
83066731 GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAGCTCGATGGGGACGTCATCACAC
1 GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
83066788 TATCCGATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (57 bp):
GTTTATAGATTTTTAGAGATCTGCTCAGATTGGAACTCGATGGGGACGTCATCACAC
Found at i:83071025 original size:36 final size:36
Alignment explanation
Indices: 83070985--83071056 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
83070975 TATAAAAGTG
83070985 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
1 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
83071021 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
1 ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
83071057 CTCCATTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (36 bp):
ACATTGTACGAGGTATCATGTGTGGCAGTTACCTAA
Found at i:83072661 original size:43 final size:42
Alignment explanation
Indices: 83072533--83072692 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 42
83072523 ATATGTGTTA
*
83072533 TCGTGTAAGACCACGTCTGGGA-TGTTGGCATCGATTTGTGATT
1 TCGTGTAAGACCACGTCTGGGACAG-TGGCATCGATTT-TGATT
* * * *
83072576 TACGTGTAAGACCACGTTTGGGACATTGCCATCG-TATATGATT
1 T-CGTGTAAGACCACGTCTGGGACAGTGGCATCGAT-TTTGATT
83072619 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACAGTGGCATCGAT-TTTGATT
* * * *
83072662 ACATGTAAGACCACATCTGGGACATTGGCAT
1 TCGTGTAAGACCACGTCTGGGACAGTGGCAT
83072693 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 40 0.41
44 29 0.30
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACAGTGGCATCGATTTTGATT
Found at i:83081631 original size:40 final size:40
Alignment explanation
Indices: 83081582--83081737 Score: 168
Period size: 40 Copynumber: 3.9 Consensus size: 40
83081572 TTGAATTCAT
* * *
83081582 ATACGTGCCCCTATTTGTGCTTCGGTACCCCTGAATGCAC
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
* *
83081622 ATACATGCCCCTGTTTGTACTTCGGTACCCTTAAATGCAC
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
** * * *
83081662 ATAGGTTCCCCTATTTGTACTTTGGTACCCCTAAATGCGC
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
** * * * *
83081702 ATACATGCCTTTGTTTATACTTTGGTAACCCTAAAT
1 ATACATGCCCCTATTTGTACTTCGGTACCCCTAAAT
83081738 CAAATAGTAT
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.35
Consensus pattern (40 bp):
ATACATGCCCCTATTTGTACTTCGGTACCCCTAAATGCAC
Found at i:83081723 original size:80 final size:80
Alignment explanation
Indices: 83081589--83081737 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 80
83081579 CATATACGTG
* * *
83081589 CCCCTATTTGTGCTTCGGTACCCCTGAATGCACATACATGCCCCTGTTTGTACTTCGGT-ACCCT
1 CCCCTATTTGTACTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTATACTTCGGTAACCC-
83081653 TAAATGCACATAGGTT
65 TAAATGCACATAGGTT
* * ** *
83081669 CCCCTATTTGTACTTTGGTACCCCTAAATGCGCATACATGCCTTTGTTTATACTTTGGTAACCCT
1 CCCCTATTTGTACTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTATACTTCGGTAACCCT
83081734 AAAT
66 AAAT
83081738 CAAATAGTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 56 0.93
81 4 0.07
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (80 bp):
CCCCTATTTGTACTTCGGTACCCCTAAATGCACATACATGCCCCTGTTTATACTTCGGTAACCCT
AAATGCACATAGGTT
Found at i:83083766 original size:63 final size:63
Alignment explanation
Indices: 83083690--83083859 Score: 153
Period size: 63 Copynumber: 2.7 Consensus size: 63
83083680 CATGGCCTAC
* * ** *
83083690 ACACACACCCGTGTTACTAGCCCGTGTGACTCTAATTCCAAAATAGTGAGTTACACGGCCTGG
1 ACACACACCCGTGTCACTAGACCAAGTGACTCTAATTCCAAAATAGTGAGTTACACGACCTGG
* * * * * * *
83083753 ACACACTCTCGTGTCCCTAGACCAAGTGTCTTTAATTCCAAAATTGTGAGTTACATGACCTGG
1 ACACACACCCGTGTCACTAGACCAAGTGACTCTAATTCCAAAATAGTGAGTTACACGACCTGG
* * * * *
83083816 ACACGCACCTAGTGTCCCT-GGCTCATGTGACTCTAATTCACAAA
1 ACACACACC-CGTGTCACTAGAC-CAAGTGACTCTAATTC-CAAA
83083860 CAGTAAGTCA
Statistics
Matches: 84, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
63 59 0.70
64 21 0.25
65 4 0.05
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (63 bp):
ACACACACCCGTGTCACTAGACCAAGTGACTCTAATTCCAAAATAGTGAGTTACACGACCTGG
Found at i:83085212 original size:24 final size:25
Alignment explanation
Indices: 83085185--83085231 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
83085175 CGACTAGTTG
*
83085185 GTTGACGAGGAAT-CCAAAGCGACA
1 GTTGACGAAGAATACCAAAGCGACA
* *
83085209 GTTGATGAAGATTACCAAAGCGA
1 GTTGACGAAGAATACCAAAGCGA
83085232 GCTAATCACC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (25 bp):
GTTGACGAAGAATACCAAAGCGACA
Found at i:83097706 original size:27 final size:27
Alignment explanation
Indices: 83097672--83097726 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
83097662 CAAATTTTTT
83097672 TGGTTGATAGTTTCTTTTAGTTTTCCA
1 TGGTTGATAGTTTCTTTTAGTTTTCCA
83097699 TGGTTGATAGTTTCTTTTAGTTTTCCA
1 TGGTTGATAGTTTCTTTTAGTTTTCCA
83097726 T
1 T
83097727 AGTTTTAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.15, C:0.11, G:0.18, T:0.56
Consensus pattern (27 bp):
TGGTTGATAGTTTCTTTTAGTTTTCCA
Found at i:83097798 original size:24 final size:24
Alignment explanation
Indices: 83097737--83097808 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
83097727 AGTTTTAGGG
*
83097737 TTAGGTTTTATTTTCTTTTCATTT
1 TTAGATTTTATTTTCTTTTCATTT
***
83097761 TTAGATTAGGTTTTCTCTTTC-TTT
1 TTAGATTTTATTTTCT-TTTCATTT
*
83097785 TTAGATTTTATTTTATTTT-ATTT
1 TTAGATTTTATTTTCTTTTCATTT
83097808 T
1 T
83097809 CCTTTCTTCT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
23 7 0.18
24 27 0.71
25 4 0.11
ACGTcount: A:0.15, C:0.07, G:0.08, T:0.69
Consensus pattern (24 bp):
TTAGATTTTATTTTCTTTTCATTT
Found at i:83106955 original size:42 final size:42
Alignment explanation
Indices: 83106896--83106999 Score: 163
Period size: 42 Copynumber: 2.5 Consensus size: 42
83106886 AGGGTTACCA
83106896 AGACTATGTGTAAGACCATATCCGAGATATGGCATCAATATG
1 AGACTATGTGTAAGACCATATCCGAGATATGGCATCAATATG
* ** *
83106938 AGACTACGTGTAAGACCATATTTGAGATATGGCATCGATATG
1 AGACTATGTGTAAGACCATATCCGAGATATGGCATCAATATG
*
83106980 AGACTTTGTGTAAGACCATA
1 AGACTATGTGTAAGACCATA
83107000 GCTGGGCTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (42 bp):
AGACTATGTGTAAGACCATATCCGAGATATGGCATCAATATG
Found at i:83110016 original size:13 final size:14
Alignment explanation
Indices: 83109998--83110027 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
83109988 CCTATGTTTA
83109998 ATTATAAAAC-CAT
1 ATTATAAAACACAT
83110011 ATTATAAAACACAT
1 ATTATAAAACACAT
83110025 ATT
1 ATT
83110028 TTTTAACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTATAAAACACAT
Found at i:83111913 original size:25 final size:26
Alignment explanation
Indices: 83111861--83111913 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
83111851 TTAGGTTTTC
* * *
83111861 TTCTGTTTTCATTTTTATATTAGGTT
1 TTCTCTTTTCATTTTTAGATTAGATT
*
83111887 TTCTCTTTTC-TTTTTAGATTATATT
1 TTCTCTTTTCATTTTTAGATTAGATT
83111912 TT
1 TT
83111914 ATTTTTGTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.15, C:0.09, G:0.08, T:0.68
Consensus pattern (26 bp):
TTCTCTTTTCATTTTTAGATTAGATT
Found at i:83113551 original size:24 final size:23
Alignment explanation
Indices: 83113511--83113625 Score: 126
Period size: 23 Copynumber: 4.9 Consensus size: 23
83113501 AAGCTCCTCC
83113511 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCT-A-AAACAGTAAGCTCTAT
83113536 TGAGCTGAAAACAGTAAGCTCTAT
1 TGAGCT-AAAACAGTAAGCTCTAT
*
83113560 TGAGCT-AGACAGTAAGCTCT-T
1 TGAGCTAAAACAGTAAGCTCTAT
* * * *
83113581 TCAAGCTAAATCAGTAAGCTCGAA
1 T-GAGCTAAAACAGTAAGCTCTAT
*
83113605 TGAGCTAAAACGGTAAGCTCT
1 TGAGCTAAAACAGTAAGCTCT
83113626 TACGAGCTGT
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
21 2 0.03
22 17 0.22
23 27 0.35
24 23 0.30
25 8 0.10
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (23 bp):
TGAGCTAAAACAGTAAGCTCTAT
Found at i:83113610 original size:23 final size:22
Alignment explanation
Indices: 83113519--83113625 Score: 117
Period size: 24 Copynumber: 4.7 Consensus size: 22
83113509 CCTGAGCTGA
83113519 TAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATTGAGC
83113541 TGAAAACAGTAAGCTCTATTGAGC
1 T--AAACAGTAAGCTCTATTGAGC
* *
83113565 TAGACAGTAAGCTCT-TTCAAGC
1 TAAACAGTAAGCTCTATT-GAGC
* *
83113587 TAAATCAGTAAGCTCGAATGAGC
1 TAAA-CAGTAAGCTCTATTGAGC
*
83113610 TAAAACGGTAAGCTCT
1 T-AAACAGTAAGCTCT
83113626 TACGAGCTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.03
22 20 0.28
23 23 0.32
24 26 0.37
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATTGAGC
Found at i:83130502 original size:48 final size:48
Alignment explanation
Indices: 83130444--83130975 Score: 884
Period size: 48 Copynumber: 11.0 Consensus size: 48
83130434 TTGATGCATA
83130444 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
83130492 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
83130540 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAGGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
83130588 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
83130636 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
83130684 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGTAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
83130732 AGATATGTATATGTGGTAAAGCCGAATGGCAAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* * *
83130782 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* *
83130832 AGATATGTATATGTGCTAAAGCCGAATGACTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
83130880 AGATATGCATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
83130930 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83130976 GGCGATGTGT
Statistics
Matches: 455, Mismatches: 25, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
48 319 0.70
49 7 0.02
50 129 0.28
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:83131174 original size:37 final size:37
Alignment explanation
Indices: 83131124--83131228 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
83131114 AAATATATTT
83131124 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
83131161 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
83131198 CAGGTAAGACCCGAT-ACTTCGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
83131229 TCATCTGAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 15 0.23
37 50 0.77
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:83133115 original size:34 final size:34
Alignment explanation
Indices: 83133075--83133171 Score: 167
Period size: 34 Copynumber: 2.9 Consensus size: 34
83133065 AAATATACAG
83133075 TAGGGCCTTAGCCCATCACAGTATCAGTATGCAT
1 TAGGGCCTTAGCCCATCACAGTATCAGTATGCAT
83133109 TAGGGCCTTAGCCCATCACAGTATCAGTATGCAT
1 TAGGGCCTTAGCCCATCACAGTATCAGTATGCAT
* * *
83133143 TACGACCTTAGCCCATCATAGTATCAGTA
1 TAGGGCCTTAGCCCATCACAGTATCAGTA
83133172 GTAGTCATGC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 60 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (34 bp):
TAGGGCCTTAGCCCATCACAGTATCAGTATGCAT
Found at i:83146491 original size:38 final size:40
Alignment explanation
Indices: 83146447--83146533 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
83146437 ATTCAACCTA
* **
83146447 ACACACCATGTA-GG-GATAGAATTGACCCACCCAACCCT
1 ACACACCAAGTATGGTGATAGAATCAACCCACCCAACCCT
** *
83146485 ACACACCAAGTATGGTGATTTAATCAACCCATCCAACCCT
1 ACACACCAAGTATGGTGATAGAATCAACCCACCCAACCCT
83146525 ACACACCAA
1 ACACACCAA
83146534 CTGGTACCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 11 0.27
39 2 0.05
40 28 0.68
ACGTcount: A:0.37, C:0.34, G:0.11, T:0.17
Consensus pattern (40 bp):
ACACACCAAGTATGGTGATAGAATCAACCCACCCAACCCT
Found at i:83151480 original size:15 final size:16
Alignment explanation
Indices: 83151451--83151485 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
83151441 GTTTTCTTTT
83151451 TCATTTAATTAAATTG
1 TCATTTAATTAAATTG
*
83151467 TCATTTAA-TAAATTT
1 TCATTTAATTAAATTG
83151482 TCAT
1 TCAT
83151486 CTTTCCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (16 bp):
TCATTTAATTAAATTG
Found at i:83155669 original size:31 final size:31
Alignment explanation
Indices: 83155631--83155693 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
83155621 TATTTTTCAT
*
83155631 TTAAGGATATAATGGTGAATGTTAGGTTACA
1 TTAAGGATATAATGGTGAATGATAGGTTACA
83155662 TTAAGGATATAATGGTGAATGATAGGTTACA
1 TTAAGGATATAATGGTGAATGATAGGTTACA
83155693 T
1 T
83155694 GTTAGTAGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (31 bp):
TTAAGGATATAATGGTGAATGATAGGTTACA
Found at i:83155843 original size:25 final size:25
Alignment explanation
Indices: 83155791--83155843 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
83155781 TTTTTCTTTC
* * *
83155791 TTTCTTTTTTCATTTTAGATTAGGT
1 TTTCTATTTTCATTTTAGAATAGAT
* *
83155816 TTTCTATTTTCTTTTTAGAATATAT
1 TTTCTATTTTCATTTTAGAATAGAT
83155841 TTT
1 TTT
83155844 ATTTTTGTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.66
Consensus pattern (25 bp):
TTTCTATTTTCATTTTAGAATAGAT
Found at i:83156561 original size:36 final size:37
Alignment explanation
Indices: 83156446--83156563 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 37
83156436 ATACTAAATA
83156446 AATATAATACTTATCAAGATAAATATTATAATATTAAATTT
1 AATATAATAC-T-TCAAGATAAATATTA-AATATT-AATTT
* * *
83156487 AATTTAATA-TT-AAGA-AAATTACTTTAATATTAAATT
1 AATATAATACTTCAAGATAAA-TA-TTAAATATTAATTT
*
83156523 AATATAATACTTCAAGATAAGTATTAAATA-TAATTT
1 AATATAATACTTCAAGATAAATATTAAATATTAATTT
83156559 AATAT
1 AATAT
83156564 TAAATTTATT
Statistics
Matches: 65, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
36 25 0.38
37 20 0.31
38 9 0.14
39 3 0.05
41 8 0.12
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (37 bp):
AATATAATACTTCAAGATAAATATTAAATATTAATTT
Found at i:83166044 original size:48 final size:48
Alignment explanation
Indices: 83165973--83166690 Score: 1202
Period size: 48 Copynumber: 14.9 Consensus size: 48
83165963 CAAGATAAAT
* * *
83165973 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
83166021 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
83166069 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
83166117 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
83166165 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
83166213 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
83166261 CTATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
83166309 ATATATATATGTGGTAAAGCCGAATGGCTACTATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
83166357 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
83166405 ATATGTATAGGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
83166453 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATACGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
83166501 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 --ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
83166551 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
83166599 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
83166647 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
83166691 GGTGATGTGT
Statistics
Matches: 632, Mismatches: 36, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 588 0.93
50 44 0.07
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Done.