Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 260 of 318
Found at i:83166887 original size:37 final size:37
Alignment explanation
Indices: 83166837--83166939 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
83166827 GGAAATATAT
83166837 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83166874 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83166911 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
83166940 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83168035 original size:21 final size:21
Alignment explanation
Indices: 83168011--83168054 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
83168001 CGACACTGTT
* * *
83168011 CAGTAGTTGTAGTAGAGCTGC
1 CAGTAATTGCAGTAAAGCTGC
83168032 CAGTAATTGCAGTAAAGCTGC
1 CAGTAATTGCAGTAAAGCTGC
83168053 CA
1 CA
83168055 TACAGTACAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (21 bp):
CAGTAATTGCAGTAAAGCTGC
Found at i:83172643 original size:12 final size:12
Alignment explanation
Indices: 83172626--83172651 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83172616 ACAAGGCAAG
83172626 GAAATCATGTAA
1 GAAATCATGTAA
83172638 GAAATCATGTAA
1 GAAATCATGTAA
83172650 GA
1 GA
83172652 CCATGTCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23
Consensus pattern (12 bp):
GAAATCATGTAA
Found at i:83172761 original size:53 final size:53
Alignment explanation
Indices: 83172643--83172787 Score: 164
Period size: 53 Copynumber: 2.7 Consensus size: 53
83172633 TGTAAGAAAT
* * * * * * *
83172643 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGTAAAGATCC
1 CATGTAAGACCATGCCAAGACATGGAAATGGT-AAGTTC-ATAAGGTAAAGATAC
* * * *
83172698 CATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGTAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGTAAAGATAC
*
83172751 CATGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 CATGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
83172788 TAAAAAGGAA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 46 0.60
54 3 0.04
55 28 0.36
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGTAAAGATAC
Found at i:83174197 original size:48 final size:48
Alignment explanation
Indices: 83174123--83174255 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 48
83174113 GCATGCTAAA
* *
83174123 TGTGCCTGTGTAAGACCGTGTCTGGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
* * *
83174171 TGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTGATTATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
* *
83174219 TG-GATTCA-TGTAAGACCATGTCGGGGACATGGCATCG
1 TGTG--CCAGTGTAAGACCATGTCTGGGACATGGCATCG
83174256 TTACTTTAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
47 1 0.01
48 71 0.96
49 2 0.03
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
Found at i:83185170 original size:24 final size:24
Alignment explanation
Indices: 83185105--83185162 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
83185095 TTCTGGGACC
83185105 AAAATCCCTAAGTGGGAAAATTGT
1 AAAATCCCTAAGTGGGAAAATTGT
83185129 AAAATCCCTAAGTGGGAAAATTGT
1 AAAATCCCTAAGTGGGAAAATTGT
*
83185153 AACATCCCTA
1 AAAATCCCTA
83185163 TGTCGGAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (24 bp):
AAAATCCCTAAGTGGGAAAATTGT
Found at i:83185219 original size:31 final size:31
Alignment explanation
Indices: 83185181--83185239 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
83185171 CAGTGGTTTC
* *
83185181 GAGACCAAAAGTCTTAGATAAAAATAATTTT
1 GAGACCAAAAATCTGAGATAAAAATAATTTT
*
83185212 GAGACCAAAAATCTGAGATAGAAATAAT
1 GAGACCAAAAATCTGAGATAAAAATAAT
83185240 CATTTTATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.24
Consensus pattern (31 bp):
GAGACCAAAAATCTGAGATAAAAATAATTTT
Found at i:83186555 original size:48 final size:48
Alignment explanation
Indices: 83186334--83186527 Score: 307
Period size: 48 Copynumber: 4.0 Consensus size: 48
83186324 CCGTGCTAAA
*
83186334 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
1 TGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* * *
83186382 TGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGCAATGATATG
1 TGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* *
83186430 TGTGCCTATGTAAGACCTTGTCTTGGACATGGCATCGGCGATGATATG
1 TGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
* **
83186478 TGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGATGATGATATG
1 TGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
83186526 TG
1 TG
83186528 AATTCATGTA
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 134 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (48 bp):
TGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
Found at i:83208563 original size:13 final size:13
Alignment explanation
Indices: 83208545--83208570 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83208535 GAGTAATCGT
83208545 ACACGGGCGTGTC
1 ACACGGGCGTGTC
83208558 ACACGGGCGTGTC
1 ACACGGGCGTGTC
83208571 CCTACCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:83211209 original size:55 final size:55
Alignment explanation
Indices: 83211140--83211283 Score: 218
Period size: 55 Copynumber: 2.6 Consensus size: 55
83211130 CACAAAACAT
*
83211140 GCCCGTGTGCCTTGGCCGTGGTCGAGTCTGACTTTGGCCACA-TGATTAGCTACAC
1 GCCCGTGTGCCTTGGCCGTGGTCGAGTCTGACTTTGGCCACACAG-TTAGCTACAC
* *
83211195 GCCCATGTGCCTTGGCCGTGGTCGAGTTTGACTTTGGCCACACAGTTAGCTACAC
1 GCCCGTGTGCCTTGGCCGTGGTCGAGTCTGACTTTGGCCACACAGTTAGCTACAC
* * *
83211250 GCCCGTGTGCCTTGGCTGTGTTCGAGCCTGACTT
1 GCCCGTGTGCCTTGGCCGTGGTCGAGTCTGACTT
83211284 ACAATTCTAA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
55 79 0.99
56 1 0.01
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.28
Consensus pattern (55 bp):
GCCCGTGTGCCTTGGCCGTGGTCGAGTCTGACTTTGGCCACACAGTTAGCTACAC
Found at i:83218275 original size:46 final size:46
Alignment explanation
Indices: 83218208--83218385 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 46
83218198 TGTAACCCGC
*
83218208 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGATGTTCGCAT
* **
83218254 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* **
83218304 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
83218347 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
83218386 CTCAATCATC
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 63 0.58
47 29 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:83218327 original size:93 final size:93
Alignment explanation
Indices: 83218215--83218386 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
83218205 CGCCCATAAG
**
83218215 CGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
83218279 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
83218308 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83218373 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83218387 TCAATCATCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83226031 original size:48 final size:48
Alignment explanation
Indices: 83225960--83226094 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
83225950 GTAAGATGCT
* * *
83225960 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTAAATGTC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATGTAAAGGCC
* * *
83226008 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTTAAGGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATGTAAAGGCC
*
83226056 GATGCCATGTTGCAGACATGGTCTTACACTAGCTCTCAT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCAT
83226095 AACCCTAGTA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATGTAAAGGCC
Found at i:83228202 original size:40 final size:40
Alignment explanation
Indices: 83228138--83228213 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
83228128 TATACATATA
* * * *
83228138 TAGCTGAAGCTATCTCTAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCGAACCGCACACCAAATGCCACATT
* *
83228178 TAGCCGAAGCTATTTCGAACCGCACACTAAATGCCA
1 TAGCCGAAGCTATCTCGAACCGCACACCAAATGCCA
83228214 TTTTTTTAGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCGAACCGCACACCAAATGCCACATT
Found at i:83251216 original size:43 final size:44
Alignment explanation
Indices: 83251120--83251244 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 44
83251110 ATCACTTATC
* * ** *
83251120 GATGCCACTGTCCCAGACAGGGTCTTACACGAAATC-GAATAAA
1 GATGCCAATGTCCCAGACATGGTCTTACACTTAATCACAATAAA
* *
83251163 GATGCTAATGTCCCAGACATGGTCTTACACTTAATCACAATACA
1 GATGCCAATGTCCCAGACATGGTCTTACACTTAATCACAATAAA
* *
83251207 -ATGCCAATGTCTCAGACATGGTCATACA-TGTAATCACA
1 GATGCCAATGTCCCAGACATGGTCTTACACT-TAATCACA
83251245 TCTCGGTAAT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.01
43 64 0.91
44 5 0.07
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (44 bp):
GATGCCAATGTCCCAGACATGGTCTTACACTTAATCACAATAAA
Found at i:83267160 original size:40 final size:40
Alignment explanation
Indices: 83267110--83267372 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
83267100 TTGAATGCTG
* * * * * *
83267110 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG-TTAAA
** * * * **
83267150 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAAA
83267190 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
83267230 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
83267270 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* **
83267310 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * *
83267349 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83267373 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 34 0.17
40 156 0.78
41 11 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:83275172 original size:40 final size:40
Alignment explanation
Indices: 83275052--83275274 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
83275042 TTGAATGCTG
* * * * * *
83275052 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
83275092 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
83275132 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
83275172 TCCGGGTTAAGTCCCGAAGGCATCCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
83275212 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * *
83275251 ACTGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83275275 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 33 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:83281065 original size:48 final size:48
Alignment explanation
Indices: 83280915--83281148 Score: 162
Period size: 48 Copynumber: 4.8 Consensus size: 48
83280905 TAAAATGCCG
* * * * * *
83280915 ATGCCATGTCCCGAACATGGTCTTACATTGGCTCTCATACATCGATGCCA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT--ATCAAGGCCA
* * * * ** * * * ** *
83280965 ATGCCATGTCCCAGACTTGGTTTTACACTAACACATATAACAATACCG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCA
* **
83281013 ATGCCATGTTCCAAACACGGTCTTACACTGGCTCACATATTGAGGCCA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCA
** * * * * * ***
83281061 ATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCATAACAATGTTG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCA
*
83281109 ATGCCATGTTCCAAACATGGTCTTAAACTGGCTCACATAT
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAT
83281149 ACCCTAACAT
Statistics
Matches: 135, Mismatches: 49, Indels: 2
0.73 0.26 0.01
Matches are distributed among these distances:
48 107 0.79
50 28 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (48 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCA
Found at i:83281090 original size:96 final size:96
Alignment explanation
Indices: 83280912--83281148 Score: 296
Period size: 96 Copynumber: 2.4 Consensus size: 96
83280902 GGGTAAAATG
* * * * * *
83280912 CCGATGCCATGTCCCGAACATGGTCTTACATTGGCTCTCATACATCGATGCCAATGCCATGTCCC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT--ATCGAGGCCAATGCCATGCCCC
* *
83280977 AGACTTGGTTTTACACTAACACAT-ATAACAATA
64 AGACATGGTCTTACACTAACAC-TCATAACAATA
* *
83281010 CCGATGCCATGTTCCAAACACGGTCTTACACTGGCTCACATATTGAGGCCAATGCCATGCCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCAATGCCATGCCCCAG
* * *
83281075 ACATGGTCTTACACTAGCTCTCATAACAATG
66 ACATGGTCTTACACTAACACTCATAACAATA
** *
83281106 TTGATGCCATGTTCCAAACATGGTCTTAAACTGGCTCACATAT
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAT
83281149 ACCCTAACAT
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
95 1 0.01
96 84 0.69
98 36 0.30
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCAATGCCATGCCCCAG
ACATGGTCTTACACTAACACTCATAACAATA
Found at i:83282346 original size:43 final size:44
Alignment explanation
Indices: 83282257--83282377 Score: 153
Period size: 43 Copynumber: 2.8 Consensus size: 44
83282247 TCACTTATTG
* * *
83282257 ATGCCACTGTCCC-AACAGGGTCTTACACGA-AATC-TAATAACG
1 ATGCCAATGTCCCAAACATGGTCTTACAC-ATAATCATAATAACA
83282299 ATGCCAATGTCCCAAACATGGTCTTACACATAATCATAAT-ACA
1 ATGCCAATGTCCCAAACATGGTCTTACACATAATCATAATAACA
*
83282342 ATGCCAATGT-CCAAGACATGGTCTTACATATAATCA
1 ATGCCAATGTCCCAA-ACATGGTCTTACACATAATCA
83282378 CATCTCGGTA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
42 17 0.24
43 50 0.70
44 4 0.06
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACACATAATCATAATAACA
Found at i:83285465 original size:27 final size:27
Alignment explanation
Indices: 83285427--83285483 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
83285417 ATCTAGATAT
83285427 AAAGTATAAAATGATATAATACATGAA
1 AAAGTATAAAATGATATAATACATGAA
83285454 AAAGTATAAAATGATATAATACATGAA
1 AAAGTATAAAATGATATAATACATGAA
83285481 AAA
1 AAA
83285484 ATTATCACAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.61, C:0.04, G:0.11, T:0.25
Consensus pattern (27 bp):
AAAGTATAAAATGATATAATACATGAA
Found at i:83294043 original size:47 final size:47
Alignment explanation
Indices: 83293986--83294179 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
83293976 TTAGGATTTT
** *
83293986 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83294033 ATATGATGAATGTGAACATGCATGTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
83294080 ATGTGATGAATGTGAGCATGCATATGTGTCATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
83294127 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83294174 ATGTGA
1 ATGTGA
83294180 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83294083 original size:22 final size:22
Alignment explanation
Indices: 83294058--83294133 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
83294048 ACATGCATGT
83294058 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
83294080 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
83294102 TATGTGTCATAAGGCCGAATGGCCA
1 -ATGTG--ATAAGGCCGAATGGCCA
83294127 ATGTGAT
1 ATGTGAT
83294134 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83294214 original size:48 final size:48
Alignment explanation
Indices: 83294048--83294283 Score: 238
Period size: 48 Copynumber: 4.9 Consensus size: 48
83294038 ATGAATGTGA
* * * *
83294048 ACATGCATGTATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG
1 ACATGCA--TATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAG
* *
83294096 -CATGCATATGT-GTCATAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-
1 ACATGCATATGTGGT-A-AA-GCCGAATGGCTAATGTGAAAT-ATGTATGAG
83294142 ACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ACATGC--ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83294192 ACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ACATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
83294240 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ACATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83294284 GGCGATGTAC
Statistics
Matches: 165, Mismatches: 8, Indels: 30
0.81 0.04 0.15
Matches are distributed among these distances:
44 2 0.01
45 6 0.04
46 2 0.01
47 47 0.28
48 86 0.52
49 14 0.08
50 8 0.05
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (48 bp):
ACATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:83294480 original size:37 final size:37
Alignment explanation
Indices: 83294430--83294542 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
83294420 GGAAATATAT
*
83294430 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
83294467 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
83294504 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
83294541 TC
1 TC
83294543 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:83295851 original size:40 final size:40
Alignment explanation
Indices: 83295796--83296306 Score: 754
Period size: 40 Copynumber: 12.8 Consensus size: 40
83295786 GAGAATTGAG
* *
83295796 AGTGATATACCCGGGCTAAGTCCCGAAGGGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83295836 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
83295876 AGTGATTTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
83295916 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
83295956 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
83295996 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83296036 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83296076 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83296116 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83296156 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
83296196 AGTGATGTATCCGGACTAAGTTCTGAAAAGCATCCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
83296236 AGTGATATATCCGTGCTAAACCCCGAA-AGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
83296275 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
83296307 ATCATGCTGG
Statistics
Matches: 434, Mismatches: 36, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
39 32 0.07
40 402 0.93
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:83300360 original size:47 final size:47
Alignment explanation
Indices: 83300306--83300499 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
83300296 TTAGGATTTT
** *
83300306 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
83300353 ATGTGATGAATGTGAACATGCATGTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
83300400 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
83300447 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83300494 ATGTGA
1 ATGTGA
83300500 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83300406 original size:22 final size:22
Alignment explanation
Indices: 83300378--83300453 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
83300368 ACATGCATGT
83300378 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
83300400 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
83300422 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
83300447 ATGTGAT
1 ATGTGAT
83300454 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83300534 original size:48 final size:48
Alignment explanation
Indices: 83300368--83300603 Score: 245
Period size: 48 Copynumber: 4.9 Consensus size: 48
83300358 ATGAATGTGA
* * * *
83300368 ACATGCATGTATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG
1 ACATGCA--TATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAG
* * *
83300416 -CATGCATATGTGTGATAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-
1 ACATGCATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAT-ATGTATGAG
83300462 ACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ACATGC--ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
83300512 ACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ACATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
83300560 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ACATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83300604 GGCGATGTGC
Statistics
Matches: 167, Mismatches: 8, Indels: 26
0.83 0.04 0.13
Matches are distributed among these distances:
44 1 0.01
45 6 0.04
46 1 0.01
47 54 0.32
48 85 0.51
49 14 0.08
50 6 0.04
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (48 bp):
ACATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:83300858 original size:37 final size:37
Alignment explanation
Indices: 83300750--83300858 Score: 184
Period size: 37 Copynumber: 2.9 Consensus size: 37
83300740 GGAAATATAT
*
83300750 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
83300787 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
83300824 TCCGGGTAAGACCCGATAACCT-CGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAA-CTACGTGTGGAGATTT
83300859 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 66 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:83304977 original size:23 final size:23
Alignment explanation
Indices: 83304944--83304987 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
83304934 TGTAAAATTT
83304944 CTATAAAGATAGTTATTATAGGG
1 CTATAAAGATAGTTATTATAGGG
*
83304967 CTATAACGATAGTTATTATAG
1 CTATAAAGATAGTTATTATAG
83304988 TTACTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (23 bp):
CTATAAAGATAGTTATTATAGGG
Found at i:83308573 original size:40 final size:40
Alignment explanation
Indices: 83308462--83308645 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
83308452 CAGATGATAA
* * *
83308462 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTATA-T
83308502 CCGGGCTAAGTCCC-AAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * *
83308541 CCGGGCTAAGTCCCGAAGGCGTTTGTGTGAGCTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * *
83308581 CTGGGCTAAGTCCCGAAGGCATTTGTGCAAGGTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
83308621 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83308646 AGCTAGTGGC
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 29 0.23
40 95 0.77
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:83308659 original size:40 final size:40
Alignment explanation
Indices: 83308462--83308668 Score: 191
Period size: 40 Copynumber: 5.2 Consensus size: 40
83308452 CAGATGATAA
83308462 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-T
* * *
83308502 CCGGGCTAAGTCCC-AAGGCATTTGTGCGAGCT-ACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTATAT
*
83308541 CCGGGCTAAGTCCCGAAGGCGTTT--G-T-GTGAGCTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTG-GCTA-TA--T
* * * * *
83308581 CTGGGCTAAGTCCCGAAGGCATTTGTGCAAG-GTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTG-GCTATAT
83308621 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
83308661 CC-GGCTAA
1 CCGGGCTAA
83308669 ACTCCGAAGG
Statistics
Matches: 136, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 3 0.02
38 3 0.02
39 35 0.26
40 84 0.62
41 1 0.01
42 3 0.02
43 4 0.03
44 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
Found at i:83316568 original size:38 final size:40
Alignment explanation
Indices: 83316462--83316719 Score: 345
Period size: 40 Copynumber: 6.6 Consensus size: 40
83316452 CGGATGATAA
* * *
83316462 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTAATT
83316502 CCGGGCTAAGTCCCGAAGGCATTT-TGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
83316541 CC-GGCTAAGT-CCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
83316579 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
* * *
83316619 CC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
* * *
83316656 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT-T
83316696 CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
83316720 AAGCTAGTGG
Statistics
Matches: 202, Mismatches: 7, Indels: 18
0.89 0.03 0.08
Matches are distributed among these distances:
37 17 0.08
38 54 0.27
39 51 0.25
40 78 0.39
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
Found at i:83316621 original size:78 final size:78
Alignment explanation
Indices: 83316496--83316719 Score: 346
Period size: 77 Copynumber: 2.9 Consensus size: 78
83316486 GAGCTAGTGG
83316496 CTAATTCCGGGCTAAGTCCCGAAGGCATTT-TGCGAGCTACTAATTCCGGCTAAGTCCGAAGGCA
1 CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGCTAAGTCCGAAGGCA
83316560 TTTGTGCGAGCTA
66 TTTGTGCGAGCTA
83316573 CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGCTAAGTCCGAAGGCA
1 CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGCTAAGTCCGAAGGCA
*
83316638 TTTGTGCGAGTTA
66 TTTGTGCGAGCTA
* * * * *
83316651 -TTATACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAG
1 CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT-TCC-GGCTAAGT-CCGAAG
83316714 GCATTT
63 GCATTT
83316720 AAGCTAGTGG
Statistics
Matches: 137, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
76 2 0.01
77 69 0.50
78 54 0.39
79 12 0.09
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (78 bp):
CTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCCGGCTAAGTCCGAAGGCA
TTTGTGCGAGCTA
Found at i:83316739 original size:117 final size:115
Alignment explanation
Indices: 83316458--83316753 Score: 368
Period size: 117 Copynumber: 2.5 Consensus size: 115
83316448 TGTTCGGATG
83316458 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTAATTCC-GGCTAAGT-CCGAAGGC
* *
83316522 ATTTTGCGAGCTACTAATTCCGGCTAAGTCCGAAGGCATTTGTGCGAGCTACT
63 ATTTTGCGAGCTACTAATACCGGCTAAGTCCGAAGGCATTTGTGCAAGCTACT
* * * *
83316575 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTAATTCCGGCTAAGTCCGAAGGCA
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTAATTCCGGCTAAGTCCGAAGGCA
* * *
83316638 TTTGTGCGAGTTA-TTATACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
64 TTT-TGCGAGCTACTAATACC-GGCTAAGT-CCGAAGGCATTTGTGCAAGCTACT
* *
83316692 ATAACCGGGCTAAGTCCCGAAGGCATTTAAGCTAGTGGCT-ATATCCGGCTAAACTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTAAT-TCCGGCT-AAGTCCGAAGG
83316754 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
115 17 0.11
116 28 0.18
117 95 0.62
118 14 0.09
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (115 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTAATTCCGGCTAAGTCCGAAGGCATT
TTGCGAGCTACTAATACCGGCTAAGTCCGAAGGCATTTGTGCAAGCTACT
Found at i:83324636 original size:40 final size:39
Alignment explanation
Indices: 83324581--83324844 Score: 363
Period size: 40 Copynumber: 6.6 Consensus size: 39
83324571 CGGATGATAA
* * *
83324581 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAATT
83324621 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
83324661 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
83324701 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* * *
83324741 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* *
83324780 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-T
83324820 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83324845 AGCTAGTGGC
Statistics
Matches: 211, Mismatches: 9, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
39 37 0.18
40 171 0.81
41 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATT
Found at i:83330085 original size:39 final size:39
Alignment explanation
Indices: 83330042--83330120 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
83330032 TTGTTTGAGG
83330042 TAAGATTCAATTCTCCATTGTTTTTTATGAGTTCTATCT
1 TAAGATTCAATTCTCCATTGTTTTTTATGAGTTCTATCT
83330081 TAAGATTCAATTCTCCATTGTTTTTTATGAGTTCTATCT
1 TAAGATTCAATTCTCCATTGTTTTTTATGAGTTCTATCT
83330120 T
1 T
83330121 TCCAAATCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.52
Consensus pattern (39 bp):
TAAGATTCAATTCTCCATTGTTTTTTATGAGTTCTATCT
Found at i:83332478 original size:14 final size:14
Alignment explanation
Indices: 83332459--83332502 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
83332449 AAAATTCTAA
83332459 ATTTTTATGAATAC
1 ATTTTTATGAATAC
* * *
83332473 ATTTTT-GGACTAA
1 ATTTTTATGAATAC
83332486 ATTTTTATGAATAC
1 ATTTTTATGAATAC
83332500 ATT
1 ATT
83332503 CTAAAGCTAG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (14 bp):
ATTTTTATGAATAC
Found at i:83336924 original size:20 final size:21
Alignment explanation
Indices: 83336899--83336938 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83336889 CCCTTGAAAC
83336899 AGGGCA-CAGGCCCGTGTGGA
1 AGGGCAGCAGGCCCGTGTGGA
*
83336919 AGGGCAGCATGCCCGTGTGG
1 AGGGCAGCAGGCCCGTGTGG
83336939 CTATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.17, C:0.25, G:0.45, T:0.12
Consensus pattern (21 bp):
AGGGCAGCAGGCCCGTGTGGA
Found at i:83338385 original size:46 final size:46
Alignment explanation
Indices: 83338132--83338536 Score: 225
Period size: 46 Copynumber: 8.6 Consensus size: 46
83338122 ATGTCGACGC
* * * *
83338132 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCAAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCT--CAATGCCGATG
* * * * *
83338181 CCATGTCCCAGACAAGTCTTACACTGGCTCTCATCT-ATTGGTGTCAATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCA---ATGCCGATG
* * * * * * *
83338230 CCATGTCCCAAACAGGTCTTACACTA--ACACACCACAAGTTGACG-T-
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA--TGCCGATG
* * * * * * *
83338275 CATATCCCAGACA-GATCTTACACTAGCTTGTATATCGCGAGGCCAATG
1 CATGTCCCAGACATG-TCTTACACTAGC-TCT-CATCTCAATGCCGATG
*
83338323 CATTGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CA-TGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
*
83338370 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
* * * * * * ** * *
83338416 GATGTCCGACACATGTCTTACACT-GGTTTAAATATCTTGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT---CATCTCAATGCCGATG
* * *
83338464 CATGTCCCAAACATGTCTTACACTAGCACTCATGCT--GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAAT-GCCGATG
*
83338510 CATGTCCCAGACATGTCTTATACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
83338537 ACACATATGA
Statistics
Matches: 274, Mismatches: 60, Indels: 46
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.00
44 21 0.08
45 3 0.01
46 102 0.37
47 22 0.08
48 40 0.15
49 71 0.26
50 14 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
Found at i:83356053 original size:21 final size:21
Alignment explanation
Indices: 83356029--83356070 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
83356019 TCATCAGATC
*
83356029 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
83356050 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
83356071 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:83358346 original size:30 final size:30
Alignment explanation
Indices: 83358301--83358360 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83358291 ATTTAATACG
*
83358301 AACTTTGGCAAAATTATA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
83358331 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
83358361 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:83393526 original size:35 final size:35
Alignment explanation
Indices: 83393486--83393560 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
83393476 CTATACCCAT
83393486 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
1 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
83393521 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
1 ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
83393556 ACTTA
1 ACTTA
83393561 CTTATAGTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (35 bp):
ACTTAATGAGGCTAATTTCAATGAATGGAAAAGGC
Found at i:83402412 original size:30 final size:30
Alignment explanation
Indices: 83402376--83402443 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
83402366 AACATATTTT
*
83402376 TATTATT-GTATGATTATTAAATATTATAAG
1 TATTATTAGTATGATTATTAAAGA-TATAAG
* *
83402406 TATTATTATTATTATTATTAAAGATATAAG
1 TATTATTAGTATGATTATTAAAGATATAAG
83402436 TATTATTA
1 TATTATTA
83402444 TTCAACATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 21 0.62
31 13 0.38
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (30 bp):
TATTATTAGTATGATTATTAAAGATATAAG
Found at i:83413416 original size:40 final size:39
Alignment explanation
Indices: 83413332--83413516 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
83413322 TTGAATGATG
* * * *
83413332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
83413372 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
83413412 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
83413451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
83413492 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
83413517 AACCAGGAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83413468 original size:79 final size:81
Alignment explanation
Indices: 83413332--83413516 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
83413322 TTGAATGATG
*
83413332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
83413396 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
83413411 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
83413473 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
83413491 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83413517 AACCAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:83413538 original size:79 final size:79
Alignment explanation
Indices: 83413333--83413549 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
83413323 TGAATGATGT
** * * * **
83413333 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-CAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
83413396 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * * *
83413413 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACCAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
83413478 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
83413492 CCGGGCTATGTCCCGAAGGCATTTGAACCAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACCAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
83413550 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.62
80 41 0.36
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACCAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:83415547 original size:67 final size:67
Alignment explanation
Indices: 83415439--83415573 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
83415429 GAGGCTTGGT
83415439 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
1 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
83415504 TC
66 TC
83415506 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
1 TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
83415571 TC
66 TC
83415573 T
1 T
83415574 CACAAACTGA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (67 bp):
TAGAATATCTATTGGCTGATCTTCAGTGCTACAATAAACCAAAGTCACTTACTCTATTCAACTTC
TC
Found at i:83420223 original size:109 final size:108
Alignment explanation
Indices: 83420102--83420469 Score: 470
Period size: 109 Copynumber: 3.4 Consensus size: 108
83420092 TTATACTTGG
* ** * * **
83420102 CTGCCATAGCATCTTTCATCTATGGTCTTACACTGTATACCTTATATTTTGTACCATGCTACCAT
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCAT
*
83420167 GGCATCTTTCATACATGGTCTTACACTACATACCTCATACTAGA
66 GGCATCTTTCAT-CATGGTCTTACACTACATACCTCATACCAGA
* * *
83420211 TTGCCATAGCATCTTTCATCTATGATCTTACGCCATATACCTTATACCTTGT-CCGATGTTGTCA
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACC-ATGTTGTCA
* **
83420275 TGGCATCTTTCATCAATGGTCTTACGCTACGCACCTCATACCAGA
65 TGGCATCTTTCATC-ATGGTCTTACACTACATACCTCATACCAGA
* * * *
83420320 CTGCCATAGCGTCTTTCATCTATGGTCTTATGCCATATGCCTTATATCTTGTATCATGTTGTCAT
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCAT
* * *
83420385 AGCCTCTTTCATCCATGGTCTTACACTACATACAC-CATACCAAA
66 GGCATCTTTCAT-CATGGTCTTACACTACATAC-CTCATACCAGA
* *
83420429 CTGCCATAGCATCTTTTATCTATGGTTTTACGCCATATACC
1 CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACC
83420470 GTTGTCACAG
Statistics
Matches: 222, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
108 3 0.01
109 216 0.97
110 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (108 bp):
CTGCCATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATATCTTGTACCATGTTGTCAT
GGCATCTTTCATCATGGTCTTACACTACATACCTCATACCAGA
Found at i:83420251 original size:51 final size:51
Alignment explanation
Indices: 83420163--83420469 Score: 168
Period size: 51 Copynumber: 5.7 Consensus size: 51
83420153 TACCATGCTA
* * *
83420163 CCATGGCATCTTTCATAC-ATGGTCTTACACTACATACCTCATACTAGATTG
1 CCATAGCATCTTTCAT-CTATGGTCTTACGCCACATACCTCATACTAGATTG
* * * *
83420214 CCATAGCATCTTTCATCTATGATCTTACGCCATATACCTTATACCTTGTCCGATGTTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATA-C---T-AGA--TTG
* * * * ** * *
83420272 TCATGGCATCTTTCATCAATGGTCTTACGCTACGCACCTCATACCAGACTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATACTAGATTG
* * * * * *
83420323 CCATAGCGTCTTTCATCTATGGTCTTATGCCATATGCCTTATATCTTGTATCATGTTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATA-C---TA-GA--TTG
* * * * * * * *
83420381 TCATAGCCTCTTTCATCCATGGTCTTACACTACATACAC-CATACCAAACTG
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATAC-CTCATACTAGATTG
* * *
83420432 CCATAGCATCTTTTATCTATGGTTTTACGCCATATACC
1 CCATAGCATCTTTCATCTATGGTCTTACGCCACATACC
83420470 GTTGTCACAG
Statistics
Matches: 187, Mismatches: 53, Indels: 33
0.68 0.19 0.12
Matches are distributed among these distances:
50 2 0.01
51 100 0.53
52 2 0.01
53 3 0.02
54 1 0.01
55 2 0.01
56 3 0.02
57 2 0.01
58 71 0.38
59 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (51 bp):
CCATAGCATCTTTCATCTATGGTCTTACGCCACATACCTCATACTAGATTG
Found at i:83420967 original size:27 final size:27
Alignment explanation
Indices: 83420861--83420959 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
83420851 TCGCCAGGTA
*
83420861 AATTGTGAACTAGGGGTTTGCTC-GTTG
1 AATTGTAAACTAGGGGTTTGC-CAGTTG
*
83420888 AATTGTAAACTGGGGGTTTGCCAGTTG
1 AATTGTAAACTAGGGGTTTGCCAGTTG
*
83420915 AATTGTAAACTGGGGGTTTGCCAGTTG
1 AATTGTAAACTAGGGGTTTGCCAGTTG
* *
83420942 AATTATGAACTAGGGGTT
1 AATTGTAAACTAGGGGTT
83420960 CGCTAGTTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.34
Consensus pattern (27 bp):
AATTGTAAACTAGGGGTTTGCCAGTTG
Found at i:83435183 original size:12 final size:12
Alignment explanation
Indices: 83435166--83435190 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83435156 TAGAACGCAT
83435166 TGGCCCGGTTGC
1 TGGCCCGGTTGC
83435178 TGGCCCGGTTGC
1 TGGCCCGGTTGC
83435190 T
1 T
83435191 TACAGGCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.40, T:0.28
Consensus pattern (12 bp):
TGGCCCGGTTGC
Found at i:83445773 original size:46 final size:46
Alignment explanation
Indices: 83445590--83445855 Score: 188
Period size: 47 Copynumber: 5.7 Consensus size: 46
83445580 TGGGTAAGGT
* *
83445590 GCCGATGCCATATCCCAGACATGGTCCTACACTAGCTCAT-ATCTC-A-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCGAG
* * *
83445636 ACTCGATACCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-
1 GC-CGAT-GCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCG-AG
* ** *
83445685 GCAGATGCATGTATCAAACATGTCTTACACTAGCT-T-ATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA--TCTCGAG
* * * *
83445731 GCCGATGCATGTCCCAGACATATCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * *
83445777 GCTGATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
**
83445825 GCCGATGCATGTCCTGGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
83445856 TGCCAATAAT
Statistics
Matches: 175, Mismatches: 30, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 71 0.41
47 73 0.42
48 25 0.14
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:83448175 original size:47 final size:47
Alignment explanation
Indices: 83448106--83448274 Score: 206
Period size: 47 Copynumber: 3.6 Consensus size: 47
83448096 GATAAGGTGC
*
83448106 CGATGGCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT
* * *
83448153 CGATGCCATGTTCCAGACATGGTCTTACACT-GACT-ACATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATCTC-AAGT
*
83448200 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTA-GTCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-ACATCTCAAGT
83448244 ACCGATGCCATGTCCCAGACATGGTCTTACA
1 --CGATGCCATGTCCCAGACATGGTCTTACA
83448275 TTGACTCTCA
Statistics
Matches: 105, Mismatches: 8, Indels: 17
0.81 0.06 0.13
Matches are distributed among these distances:
45 13 0.12
46 31 0.30
47 53 0.50
48 8 0.08
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT
Found at i:83448270 original size:93 final size:93
Alignment explanation
Indices: 83448104--83448325 Score: 299
Period size: 93 Copynumber: 2.4 Consensus size: 93
83448094 TGGATAAGGT
*
83448104 GCCGATGGCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTTCCAG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAG
*
83448169 ACATGGTCTTACACTGACT-ACAT-CTCGTA
64 ACATGGTCTTACACTGACTCACATAAT-GTA
*
83448198 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTA-GTCTCAA-TACCGATGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-ACATCTCAAGT--CGATGCCATGTCCCA
* * *
83448261 GACATGGTCTTACATTGACTCTCATAATGTG
63 GACATGGTCTTACACTGACTCACATAATGTA
*
83448292 GCCGATGCATGTCCCGGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
83448326 CAACAATAAC
Statistics
Matches: 116, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
91 1 0.01
92 21 0.18
93 49 0.42
94 44 0.38
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTCACATAATGTA
Found at i:83448303 original size:47 final size:46
Alignment explanation
Indices: 83448104--83448325 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 46
83448094 TGGATAAGGT
* **
83448104 GCCGATGGCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
1 GCCGAT-GCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTA
* * *
83448151 GTCGATGCCATGTTCCAGACATGGTCTTACACT-GACT-ACATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTCACATAT-GTA
*
83448198 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTAGTC-TCA-ATA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTC-A--CAT-ATGTA
* * *
83448245 -CCGATGCCATGTCCCAGACATGGTCTTACA-TTGACTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTCACAT-ATGTA
*
83448292 GCCGATGCATGTCCCGGACAT-GTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGC
83448326 CAACAATAAC
Statistics
Matches: 144, Mismatches: 15, Indels: 33
0.75 0.08 0.17
Matches are distributed among these distances:
45 13 0.09
46 39 0.27
47 73 0.51
48 18 0.12
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCACATATGTA
Found at i:83450612 original size:57 final size:56
Alignment explanation
Indices: 83450543--83450730 Score: 166
Period size: 57 Copynumber: 3.3 Consensus size: 56
83450533 AACACCAGAA
* * *
83450543 AAAGGACAGCCTTTGTGGCAAAAATTTGGAAAGGCAAGCATTGTTGGCGAACCTATT
1 AAAGGATAGCCTTTGTGGCAAAAATTTAGAAAGGCAAGCTTTG-TGGCGAACCTATT
* * * * * *
83450600 AAAGGATAGCCTTTATGG-AAAAACTCTCGAAA-GCAAGCCTTTGTGGTGAACATGTT
1 AAAGGATAGCCTTTGTGGCAAAAA-TTTAGAAAGGCAAG-CTTTGTGGCGAACCTATT
* * * ** * * *
83450656 AAATGATAGCATTTGTCGCAAATCTTTAGAAGGGTAAGCTTTTGTGGCGAACCTCTT
1 AAAGGATAGCCTTTGTGGCAAAAATTTAGAAAGGCAAGC-TTTGTGGCGAACCTATT
83450713 AAAGGAT-GCCTTTGTGGC
1 AAAGGATAGCCTTTGTGGC
83450731 GAGACCTTGA
Statistics
Matches: 102, Mismatches: 24, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
56 49 0.48
57 53 0.52
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (56 bp):
AAAGGATAGCCTTTGTGGCAAAAATTTAGAAAGGCAAGCTTTGTGGCGAACCTATT
Found at i:83450751 original size:28 final size:27
Alignment explanation
Indices: 83450543--83450753 Score: 75
Period size: 28 Copynumber: 7.5 Consensus size: 27
83450533 AACACCAGAA
* ** *
83450543 AAAGGACAGCCTTTGTGGCAAAAATTTGG
1 AAAGGA-AGCCTTTGTGGCGAACCTCT-G
* * *
83450572 AAAGGCAAG-CATTGTTGGCGAACCTATT
1 AAAGG-AAGCCTTTG-TGGCGAACCTCTG
* ** *
83450600 AAAGGATAGCCTTTATGGAAAAACTCTCG
1 AAAGGA-AGCCTTTGTGGCGAACCTCT-G
* * * * *
83450629 AAAGCAAGCCTTTGTGGTGAACATGTT
1 AAAGGAAGCCTTTGTGGCGAACCTCTG
* * * * * *
83450656 AAATGATAGCATTTGTCGCAAATCTTTAG
1 AAAGGA-AGCCTTTGTGGCGAACCTCT-G
* * *
83450685 AAGGGTAAGCTTTTGTGGCGAACCTCTT
1 AAAGG-AAGCCTTTGTGGCGAACCTCTG
*
83450713 AAAGGATGCCTTTGTGGCGAGACCT-TG
1 AAAGGAAGCCTTTGTGGCGA-ACCTCTG
83450740 AAAGGAAAGCCTTT
1 AAAGG-AAGCCTTT
83450754 TTGGTAAGTA
Statistics
Matches: 128, Mismatches: 44, Indels: 21
0.66 0.23 0.11
Matches are distributed among these distances:
27 24 0.19
28 61 0.48
29 41 0.32
30 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (27 bp):
AAAGGAAGCCTTTGTGGCGAACCTCTG
Found at i:83450813 original size:28 final size:28
Alignment explanation
Indices: 83450779--83450843 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
83450769 TGAAAATGAC
83450779 GCCTTTGTGGAAATCTCTAGATAAA-GAAT
1 GCCTTTGTGGAAATCTCT-GA-AAAGGAAT
**
83450808 -CCTTTGTGGCTATCTCTGAAAAGGAAT
1 GCCTTTGTGGAAATCTCTGAAAAGGAAT
83450835 GCCTTTGTG
1 GCCTTTGTG
83450844 ACACCATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 3 0.09
27 6 0.19
28 23 0.72
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (28 bp):
GCCTTTGTGGAAATCTCTGAAAAGGAAT
Found at i:83453188 original size:20 final size:19
Alignment explanation
Indices: 83453156--83453198 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
83453146 CCAGTCCGCA
* * *
83453156 TTTTTCACCTTTTTCCACT
1 TTTTTCACATTTTACAACT
83453175 TTTTTACACATTTTACAACT
1 TTTTT-CACATTTTACAACT
83453195 TTTT
1 TTTT
83453199 ACAAATAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTCACATTTTACAACT
Found at i:83462626 original size:31 final size:31
Alignment explanation
Indices: 83462585--83462643 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
83462575 TAGCTTTATC
*
83462585 ATTAAACTATTCGAAAGTTTTCATTTAAATT
1 ATTAAACTATTCAAAAGTTTTCATTTAAATT
* *
83462616 ATTAATCTATTCAAAAGTTTTTATTTAA
1 ATTAAACTATTCAAAAGTTTTCATTTAA
83462644 GTCAATGTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (31 bp):
ATTAAACTATTCAAAAGTTTTCATTTAAATT
Found at i:83467623 original size:120 final size:119
Alignment explanation
Indices: 83467411--83467654 Score: 330
Period size: 120 Copynumber: 2.0 Consensus size: 119
83467401 GTTGTCAACA
* * *
83467411 ATGGCCTTTACAAAACTAAATACACTTCGTTTAGCCTAGCATGAGGGTTCCTACGTTTCTATATT
1 ATGGCCTTTACAAAACTAAATACACTTCATTTAACCTAGCATGAGGGTTCCTACGTTTCTACATT
* *
83467476 TTAGCAGATTACTCTCTCACCCCCTCTC-GAAAATTTATCTACATGGTATCTTTG
66 TTAGCAGATTACTCTCTCACCCCCTCTCTG-AAATTTAGCAACATGGTATCTTTG
* * * * *
83467530 ATGGCCTTTTCAAAATTAAGTACACTTTCATTTAACCTAGTATGAGGGTTCCTACGTTTCTGCAT
1 ATGGCCTTTACAAAACTAAATACAC-TTCATTTAACCTAGCATGAGGGTTCCTACGTTTCTACAT
* * *
83467595 TTTAGCTGCTTACTCTAC-CACCCTCTCTCTGAAATTTAGCAACATGGTATCTTTG
65 TTTAGCAGATTACTCT-CTCACCCCCTCTCTGAAATTTAGCAACATGGTATCTTTG
83467650 ATGGC
1 ATGGC
83467655 AGGGTAAATG
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
119 22 0.20
120 85 0.78
121 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (119 bp):
ATGGCCTTTACAAAACTAAATACACTTCATTTAACCTAGCATGAGGGTTCCTACGTTTCTACATT
TTAGCAGATTACTCTCTCACCCCCTCTCTGAAATTTAGCAACATGGTATCTTTG
Found at i:83473105 original size:23 final size:23
Alignment explanation
Indices: 83473075--83473127 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
83473065 GCATCATGAC
83473075 GAAA-ATGAGTAAGACCATAGCT
1 GAAAGATGAGTAAGACCATAGCT
*
83473097 GAAAGATGAGTAAGATCATAGCT
1 GAAAGATGAGTAAGACCATAGCT
83473120 GAAAGATG
1 GAAAGATG
83473128 CTATAGTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.14
23 25 0.86
ACGTcount: A:0.45, C:0.09, G:0.26, T:0.19
Consensus pattern (23 bp):
GAAAGATGAGTAAGACCATAGCT
Found at i:83479387 original size:23 final size:23
Alignment explanation
Indices: 83479360--83479408 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
83479350 TGGCTGCCAA
83479360 TTCAAGATCATGTATCGAGTAAT
1 TTCAAGATCATGTATCGAGTAAT
83479383 TTCAAGATCATGTATCGAGTAAT
1 TTCAAGATCATGTATCGAGTAAT
83479406 TTC
1 TTC
83479409 TTTCATGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (23 bp):
TTCAAGATCATGTATCGAGTAAT
Found at i:83493092 original size:12 final size:12
Alignment explanation
Indices: 83493075--83493099 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83493065 CAAAAATGTA
83493075 AAAATCATCAAG
1 AAAATCATCAAG
83493087 AAAATCATCAAG
1 AAAATCATCAAG
83493099 A
1 A
83493100 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:83506669 original size:37 final size:37
Alignment explanation
Indices: 83506618--83506718 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
83506608 AATAGTCCCT
*
83506618 ACACGTAGTTATCGGGTCTTACCCGGACAAAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCC
*
83506655 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCC
83506692 ACACGTAGTCATCGGGTCTTACCCGGA
1 ACACGTAGTCATCGGGTCTTACCCGGA
83506719 ATATATTTCC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCC
Found at i:83506917 original size:48 final size:48
Alignment explanation
Indices: 83506859--83507532 Score: 1087
Period size: 48 Copynumber: 14.0 Consensus size: 48
83506849 ATATACACAC
* * *
83506859 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83506907 ATCTCATACATATTTCGCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83506955 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
83507003 ATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83507051 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83507099 ATCTCATATATATTTCACACTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83507147 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83507195 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83507243 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83507291 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83507339 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83507387 ATCTCATACATATTTCATATTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83507435 ATCTCATACATATTTCGCACTAGCCATTCGACTTAACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83507483 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83507531 AT
1 AT
83507533 ATTTATCTTG
Statistics
Matches: 582, Mismatches: 44, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 582 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83514416 original size:45 final size:45
Alignment explanation
Indices: 83514349--83514435 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
83514339 TTATATGCTT
83514349 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
1 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
* * *
83514394 AAAATGAGTAAGACTATGGCTGAAAGACGTTATGGCATCATG
1 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATG
83514436 GTAAATAGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
Found at i:83514463 original size:45 final size:44
Alignment explanation
Indices: 83514349--83514465 Score: 119
Period size: 45 Copynumber: 2.6 Consensus size: 44
83514339 TTATATGCTT
* *
83514349 AAAATGAGTAAGACCATAGCTGAAAGACATTATGGCATCATGACG
1 AAAAGGAGTAAAACCATAGCTGAAAGACATTATGGCATCATGA-G
* * * * *
83514394 AAAATGAGTAAGACTATGGCTGAAAGACGTTATGGCATCATG-G
1 AAAAGGAGTAAAACCATAGCTGAAAGACATTATGGCATCATGAG
* *
83514437 TAAATAGGATTAAAACCATAGATGAAAGA
1 -AAA-AGGAGTAAAACCATAGCTGAAAGA
83514466 TGCTATGACA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
43 1 0.02
44 3 0.05
45 57 0.93
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.21
Consensus pattern (44 bp):
AAAAGGAGTAAAACCATAGCTGAAAGACATTATGGCATCATGAG
Found at i:83532121 original size:40 final size:40
Alignment explanation
Indices: 83532070--83532694 Score: 1081
Period size: 40 Copynumber: 15.6 Consensus size: 40
83532060 CATTTGAATG
83532070 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
83532110 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532150 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532190 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532230 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532270 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532310 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
83532350 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
83532390 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532430 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
83532470 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
83532510 ATATCCGGGATAAGACCCGAAGGCATTTGTACGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
83532550 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
83532590 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
83532630 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
83532670 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
83532695 ATTGAGCTTG
Statistics
Matches: 558, Mismatches: 25, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 555 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:83537903 original size:40 final size:40
Alignment explanation
Indices: 83537848--83537957 Score: 186
Period size: 40 Copynumber: 2.8 Consensus size: 40
83537838 CGGATGGTAA
*
83537848 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
83537888 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
83537928 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
83537958 AGGCATTTGT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 66 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:83537960 original size:14 final size:14
Alignment explanation
Indices: 83537941--83537971 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
83537931 GGCTAAGTCC
83537941 CGAAGGCATTTGTG
1 CGAAGGCATTTGTG
83537955 CGAAGGCATTTGTG
1 CGAAGGCATTTGTG
83537969 CGA
1 CGA
83537972 GTTACTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (14 bp):
CGAAGGCATTTGTG
Found at i:83537983 original size:54 final size:54
Alignment explanation
Indices: 83537901--83538011 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
83537891 GGCTAAGTCC
83537901 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
83537955 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
83538009 CGA
1 CGA
83538012 GTTACTATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (54 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
Found at i:83538010 original size:40 final size:40
Alignment explanation
Indices: 83537955--83538078 Score: 182
Period size: 40 Copynumber: 3.1 Consensus size: 40
83537945 GGCATTTGTG
83537955 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
83537995 CGAAGGCATTTGTGCGAGTTACTATATACGGGCTAAGT-C
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
83538034 CGAAGGCATTTGAGTGAG-TAGCTATATCC-GGCTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
83538073 CGAAGG
1 CGAAGG
83538079 TACTTGGTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
38 9 0.12
39 31 0.40
40 37 0.48
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:83538027 original size:94 final size:93
Alignment explanation
Indices: 83537861--83538045 Score: 318
Period size: 94 Copynumber: 2.0 Consensus size: 93
83537851 GGCTAAGTCC
*
83537861 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
83537926 ATCCGGGCTAAGTCCCGAAGGCATTTGTG
66 ATACGGGCTAAGT-CCGAAGGCATTTGTG
*
83537955 CGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
83538019 TATACGGGCTAAGTCCGAAGGCATTTG
65 TATACGGGCTAAGTCCGAAGGCATTTG
83538046 AGTGAGTAGC
Statistics
Matches: 87, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
93 15 0.17
94 72 0.83
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
CGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
ATACGGGCTAAGTCCGAAGGCATTTGTG
Found at i:83545939 original size:40 final size:40
Alignment explanation
Indices: 83545884--83546128 Score: 288
Period size: 40 Copynumber: 6.5 Consensus size: 40
83545874 TCGATGGTAA
*
83545884 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
83545924 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
83545964 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
83546003 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
*
83546043 CCGGGCTAAGT-CCG-AGGCA-TTGTGC-GGTTA-TAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
83546077 -CGGGCTAAGT-CCG-AGG-A-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
*
83546112 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
83546129 TACTTGGTTT
Statistics
Matches: 186, Mismatches: 8, Indels: 25
0.85 0.04 0.11
Matches are distributed among these distances:
32 8 0.04
33 17 0.09
34 4 0.02
35 11 0.06
36 8 0.04
37 7 0.04
38 5 0.03
39 40 0.22
40 85 0.46
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:83546037 original size:79 final size:79
Alignment explanation
Indices: 83545884--83546128 Score: 325
Period size: 79 Copynumber: 3.2 Consensus size: 79
83545874 TCGATGGTAA
* *
83545884 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-TCCGGGCTAAGTCCCGAAGGCATTTG
*
83545949 TGCAAGTTACTATAT
65 TGCGAGTTACTATAT
83545964 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
*
83546029 GTGAGTTACTATAT
66 GCGAGTTACTATAT
* *
83546043 CCGGGCTAAGT-CCG-AGGCA-TTGTGCG-GTTA-T-ATTCGGGCTAAGT-CCG-AGG-A-TTGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
83546098 GCGAG-TAGCTATAT
66 GCGAGTTA-CTATAT
*
83546112 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
83546129 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 8, Indels: 16
0.87 0.04 0.09
Matches are distributed among these distances:
68 9 0.06
69 18 0.12
70 3 0.02
71 3 0.02
72 3 0.02
73 12 0.08
74 1 0.01
75 4 0.03
76 7 0.05
77 5 0.03
78 3 0.02
79 50 0.32
80 36 0.23
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:83550099 original size:34 final size:34
Alignment explanation
Indices: 83550061--83550132 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
83550051 ATAAACCAAA
83550061 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
1 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
*
83550095 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGTTCG
1 TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
83550129 TAAA
1 TAAA
83550133 ATCAAACATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (34 bp):
TAAAGTAAGCTTTCAAATAAGCTTAGTAAGCTCG
Found at i:83557541 original size:55 final size:56
Alignment explanation
Indices: 83557469--83557596 Score: 152
Period size: 55 Copynumber: 2.3 Consensus size: 56
83557459 TGTGTCAATC
* * * *
83557469 TAACAAGTTCGACCACGGGTAC-TAGACACGGGCGTGTCGCACGCCCGTGCTGTTT
1 TAACAGGTTCAACCACGGGTACTTACACACGGGCGTGTCACACGCCCGTGCTGTTT
* * * *
83557524 TAACAGGTTCACCCAC-GGTTCTTCCACACGGGCGTGTCACACGCCCGTGTTGTTT
1 TAACAGGTTCAACCACGGGTACTTACACACGGGCGTGTCACACGCCCGTGCTGTTT
**
83557579 TGGCAGGTTCAACCACGG
1 TAACAGGTTCAACCACGG
83557597 CCATGTCGCA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
54 4 0.07
55 55 0.92
56 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.23
Consensus pattern (56 bp):
TAACAGGTTCAACCACGGGTACTTACACACGGGCGTGTCACACGCCCGTGCTGTTT
Found at i:83566892 original size:85 final size:86
Alignment explanation
Indices: 83566748--83566915 Score: 250
Period size: 85 Copynumber: 2.0 Consensus size: 86
83566738 CTATAAAACA
* * * *
83566748 TGACTTTTAGCGGCGCTTTTGCTACAAACACCGCTAAAGAACATGACCTTTAGCGGCGCTTTCTC
1 TGACTTTTAGCGGCACTTTTCCTACAAACACCACTAAACAACATGACCTTTAGCGGCGCTTTCTC
*
83566813 CACAAAC-GTTGCTAAAGATCC
66 CAC-AACTGTCGCTAAAGATCC
**
83566834 TGACTTTTAGCGGCACTTTTCCTA-AAACGTCACTAAACAACATGACCTTTAGCGGCGCTTTCTC
1 TGACTTTTAGCGGCACTTTTCCTACAAACACCACTAAACAACATGACCTTTAGCGGCGCTTTCTC
83566898 CACAACTGTCGCTAAAGA
66 CACAACTGTCGCTAAAGA
83566916 ACATGATCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 3 0.04
85 49 0.66
86 22 0.30
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (86 bp):
TGACTTTTAGCGGCACTTTTCCTACAAACACCACTAAACAACATGACCTTTAGCGGCGCTTTCTC
CACAACTGTCGCTAAAGATCC
Found at i:83566937 original size:43 final size:42
Alignment explanation
Indices: 83566736--83566926 Score: 190
Period size: 43 Copynumber: 4.5 Consensus size: 42
83566726 AAAAAAATGC
* * **
83566736 CGCTATAA-AACATGACTTTTAGCGGCGCTTT-TGCTACAAACAC
1 CGCTA-AAGAACATGACCTTTAGCGGCGCTTTCT-CCAC-AACGT
83566779 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCCACAAACGT
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCCAC-AACGT
* * * * * *
83566822 TGCTAAAGATCCTGACTTTTAGCGGCACTTT-TCCTAAAACGT
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCC-ACAACGT
* *
83566864 CACTAAACAACATGACCTTTAGCGGCGCTTTCTCCACAACTGT
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCCACAAC-GT
*
83566907 CGCTAAAGAACATGATCTTT
1 CGCTAAAGAACATGACCTTT
83566927 GGCGATGCTT
Statistics
Matches: 122, Mismatches: 21, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
42 38 0.31
43 83 0.68
44 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
CGCTAAAGAACATGACCTTTAGCGGCGCTTTCTCCACAACGT
Found at i:83566947 original size:85 final size:85
Alignment explanation
Indices: 83566736--83566926 Score: 215
Period size: 85 Copynumber: 2.2 Consensus size: 85
83566726 AAAAAAATGC
* * * * ** * *
83566736 CGCTATAA-AACATGACTTTTAGCGGCGCTTTTGCTACAAACACCGCTAAAGAACATGACCTTTA
1 CGCTA-AAGAACATGACTTTTAGCGACACTTTT-CCAAAAACGTCACTAAACAACATGACCTTTA
83566800 GCGGCGCTTTCTCCACAAACGT
64 GCGGCGCTTTCTCCACAAACGT
* * * * *
83566822 TGCTAAAGATCCTGACTTTTAGCGGCACTTTTCCTAAAACGTCACTAAACAACATGACCTTTAGC
1 CGCTAAAGAACATGACTTTTAGCGACACTTTTCCAAAAACGTCACTAAACAACATGACCTTTAGC
83566887 GGCGCTTTCTCCAC-AACTGT
66 GGCGCTTTCTCCACAAAC-GT
83566907 CGCTAAAGAACATGATCTTT
1 CGCTAAAGAACATGA-CTTT
83566927 GGCGATGCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
84 3 0.03
85 56 0.64
86 29 0.33
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (85 bp):
CGCTAAAGAACATGACTTTTAGCGACACTTTTCCAAAAACGTCACTAAACAACATGACCTTTAGC
GGCGCTTTCTCCACAAACGT
Found at i:83567684 original size:46 final size:46
Alignment explanation
Indices: 83567634--83567731 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
83567624 TTTCAGCAAC
*
83567634 TAAACAATTCAATTTATAGTACTTAAAAACTTCAATTTACAACATT
1 TAAACAATTCAATTTACAGTACTTAAAAACTTCAATTTACAACATT
* * *
83567680 TAAACACTTGAATTTGCAGTACTTAAAAACTTCAATTTACAACATT
1 TAAACAATTCAATTTACAGTACTTAAAAACTTCAATTTACAACATT
83567726 TAAACA
1 TAAACA
83567732 CTTGAAATCG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (46 bp):
TAAACAATTCAATTTACAGTACTTAAAAACTTCAATTTACAACATT
Found at i:83567756 original size:24 final size:23
Alignment explanation
Indices: 83567728--83567781 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
83567718 ACAACATTTA
*
83567728 AACACTTGAAATCGCAGCACTTTT
1 AACACTTGAAATCGCAGAAC-TTT
* *
83567752 AACACTTGAATTTGCAGAACTTT
1 AACACTTGAAATCGCAGAACTTT
83567775 AACACTT
1 AACACTT
83567782 CAATTTACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.31
Consensus pattern (23 bp):
AACACTTGAAATCGCAGAACTTT
Found at i:83567765 original size:70 final size:69
Alignment explanation
Indices: 83567676--83567824 Score: 226
Period size: 70 Copynumber: 2.1 Consensus size: 69
83567666 CAATTTACAA
* * *
83567676 CATTTAAACACTTGAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTGAAATC
1 CATTTTAACACTTGAATTTGCAGAACTTAAAAACTTCAATTTACAACATTTAAACACTTCAAATC
83567741 GCAG
66 GCAG
* * *
83567745 CACTTTTAACACTTGAATTTGCAGAACTTTAACACTTCAATTTACAACATTTAAACACTTCAATT
1 CA-TTTTAACACTTGAATTTGCAGAACTTAAAAACTTCAATTTACAACATTTAAACACTTCAAAT
*
83567810 TGCAG
65 CGCAG
83567815 CATTTTAACA
1 CATTTTAACA
83567825 TCTCAATTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
69 10 0.14
70 62 0.86
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.34
Consensus pattern (69 bp):
CATTTTAACACTTGAATTTGCAGAACTTAAAAACTTCAATTTACAACATTTAAACACTTCAAATC
GCAG
Found at i:83567810 original size:46 final size:46
Alignment explanation
Indices: 83567752--83568076 Score: 304
Period size: 46 Copynumber: 7.1 Consensus size: 46
83567742 CAGCACTTTT
* *
83567752 AACACTTGAATTTGCAGAACTTTAACACTTCAATTTACAACATTTA
1 AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATTTA
* *
83567798 AACACTTCAATTTGCAGCATTTTAACA-TCTCAATTAACAACATTTA
1 AACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATTTA
* ** * * ** * * **
83567844 TATTCCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTTCAGCAACTA
1 AACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTTACAACATTTA
* *
83567889 AACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTA
1 AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATTTA
* * * *
83567935 AGCACTTCAATTTACAGCA-TTTAAACACTTCAATTTATAGCATTT-
1 AACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACATTTA
* * *
83567980 AATACTTCAATTTGCAGCACTTTAACACTTAAATTTACAGCATTTA
1 AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATTTA
* * *
83568026 AACACTTCAATTTGCTGCACTTTAACA-TCTCAATTAATAACATTTA
1 AACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATTTA
*
83568072 TACAC
1 AACAC
83568077 CTCATGTAAC
Statistics
Matches: 225, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
45 72 0.32
46 152 0.68
47 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.35
Consensus pattern (46 bp):
AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATTTA
Found at i:83568038 original size:91 final size:91
Alignment explanation
Indices: 83567656--83568038 Score: 321
Period size: 91 Copynumber: 4.2 Consensus size: 91
83567646 TTTATAGTAC
* * * * * * *
83567656 TTAAAAACTTCAATTTACAACATTTAAACACTTGAATTTGCAGTACTTAAAAACTTCAATTTACA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCA-TTAAACACTTCAATTTGCA
* ** *
83567721 ACA-TTTAAACACTTGAAA-TCGCAGCACT
65 GCACTTT-AACACTT-AAATTTACAACA-T
* * * * *
83567749 TTTAACACTTGAATTTGCAGAACTTT-AACACTTCAATTTACAACATTTAAACACTTCAATTTGC
1 TTAAACACTTCAATTTACAGCA-TTTAAACACTTCAATTTACAGCA-TTAAACACTTCAATTTGC
* * *
83567813 AGCATTTTAACA-TCTCAATTAACAACAT
64 AGCACTTTAACACT-TAAATTTACAACAT
* ** * * * *
83567841 TTATATTCCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTTCAGCAACTAAACACTTCAATTTG
1 TTAAACACTTCAATTTACAGC-ATTTAAACACT-TCAATTTACAGC-ATTAAACACTTCAATTTG
* * *
83567903 CAGTACTTAAACACTTCAATTTACAACAT
63 CAGCACTTTAACACTTAAATTTACAACAT
* * * *
83567932 TTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTATAGCATTTAATACTTCAATTTGCAG
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTAAACACTTCAATTTGCAG
*
83567997 CACTTTAACACTTAAATTTACAGCAT
66 CACTTTAACACTTAAATTTACAACAT
83568023 TTAAACACTTCAATTT
1 TTAAACACTTCAATTT
83568039 GCTGCACTTT
Statistics
Matches: 228, Mismatches: 50, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
90 2 0.01
91 122 0.54
92 37 0.16
93 61 0.27
94 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.35
Consensus pattern (91 bp):
TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTAAACACTTCAATTTGCAG
CACTTTAACACTTAAATTTACAACAT
Found at i:83568052 original size:23 final size:22
Alignment explanation
Indices: 83567662--83568060 Score: 266
Period size: 23 Copynumber: 17.4 Consensus size: 22
83567652 GTACTTAAAA
*
83567662 ACTTCAATTTACAACATTTAAAC
1 ACTTCAATTTACAGCATTT-AAC
* * * * *
83567685 ACTTGAATTTGCAGTACTTAAAA
1 ACTTCAATTTACAGCA-TTTAAC
*
83567708 ACTTCAATTTACAACATTTAAAC
1 ACTTCAATTTACAGCATTT-AAC
* * **
83567731 ACTTGAAATCGCAGCACTTTTAAC
1 ACTTCAATTTACAGCA--TTTAAC
* * *
83567755 ACTTGAATTTGCAGAACTTTAAC
1 ACTTCAATTTACAGCA-TTTAAC
*
83567778 ACTTCAATTTACAACATTTAAAC
1 ACTTCAATTTACAGCATTT-AAC
*
83567801 ACTTCAATTTGCAGCATTTTAAC
1 ACTTCAATTTACAGCA-TTTAAC
* * *
83567824 A-TCTCAATTAACAACATTTATAT
1 ACT-TCAATTTACAGCATTTA-AC
* * **
83567847 TCCTCAA-TTACAGCGATAAAAC
1 ACTTCAATTTACAGC-ATTTAAC
* * *
83567869 A-TCTCAATTTTCAGCAACTAAAC
1 ACT-TCAATTTACAGC-ATTTAAC
* * *
83567892 ACTTCAATTTGCAGTACTTAAAC
1 ACTTCAATTTACAGCA-TTTAAC
*
83567915 ACTTCAATTTACAACATTTAAGC
1 ACTTCAATTTACAGCATTTAA-C
83567938 ACTTCAATTTACAGCATTTAAAC
1 ACTTCAATTTACAGCATTT-AAC
* *
83567961 ACTTCAATTTATAGCATTTAAT
1 ACTTCAATTTACAGCATTTAAC
*
83567983 ACTTCAATTTGCAGCACTTTAAC
1 ACTTCAATTTACAGCA-TTTAAC
*
83568006 ACTTAAATTTACAGCATTTAAAC
1 ACTTCAATTTACAGCATTT-AAC
* *
83568029 ACTTCAATTTGCTGCACTTTAAC
1 ACTTCAATTTACAGCA-TTTAAC
83568052 A-TCTCAATT
1 ACT-TCAATT
83568061 AATAACATTT
Statistics
Matches: 294, Mismatches: 62, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
22 45 0.15
23 219 0.74
24 27 0.09
25 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (22 bp):
ACTTCAATTTACAGCATTTAAC
Found at i:83568591 original size:41 final size:40
Alignment explanation
Indices: 83568512--83568595 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
83568502 TAATATACAT
* *
83568512 ATATTAGTAATTATTATATATTTACTTATAATTTAAGTAA
1 ATATTAGTAATTATTATATATTTAATTATAATTAAAGTAA
*
83568552 ATATTATTATATTATTATATTATATTAATTA-AA-TAAAGTAA
1 ATATTAGTA-ATTATTATA-TAT-TTAATTATAATTAAAGTAA
83568593 ATA
1 ATA
83568596 AATTAAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
40 8 0.21
41 19 0.50
42 5 0.13
43 6 0.16
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (40 bp):
ATATTAGTAATTATTATATATTTAATTATAATTAAAGTAA
Found at i:83568992 original size:17 final size:17
Alignment explanation
Indices: 83568970--83569003 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
83568960 AATTTGAAAG
*
83568970 TTAGTATATTTTTGGAC
1 TTAGTAGATTTTTGGAC
83568987 TTAGTAGATTTTTGGAC
1 TTAGTAGATTTTTGGAC
83569004 ATGGTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.50
Consensus pattern (17 bp):
TTAGTAGATTTTTGGAC
Found at i:83569779 original size:40 final size:39
Alignment explanation
Indices: 83569723--83569838 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 39
83569713 CCTTCTCGAG
83569723 AATTAAAAGTGAATAGGATTTATTCCTGATTCACTAAAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTAAAA-A
* *
83569764 AATTAAAGTGAATAGGAATTATTCCTGATTCACTAGAAA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAAAAA
* * * *
83569803 TATATAAAATGGATAGGATTTGTTCCTGATTCACTA
1 AAT-TAAAGTGAATAGGATTTATTCCTGATTCACTA
83569839 TGGTAACTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 60 0.90
41 4 0.06
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.34
Consensus pattern (39 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTAAAAA
Found at i:83571613 original size:25 final size:25
Alignment explanation
Indices: 83571585--83571663 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
83571575 CTAATGGCCG
83571585 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
*** ****
83571610 ATGTGAT-AATGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
83571632 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
83571657 ATGTGAT
1 ATGTGAT
83571664 AAGCCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:83571771 original size:49 final size:47
Alignment explanation
Indices: 83571572--83571843 Score: 454
Period size: 47 Copynumber: 5.7 Consensus size: 47
83571562 ATGATAGTAT
83571572 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
83571619 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
83571666 GCCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
83571713 GGCCTAATGGCCGATTTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
83571762 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
83571811 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
83571844 CCCGAAGGGC
Statistics
Matches: 215, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 122 0.57
49 89 0.41
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:83573952 original size:43 final size:43
Alignment explanation
Indices: 83573904--83574092 Score: 369
Period size: 43 Copynumber: 4.4 Consensus size: 43
83573894 TTGGTTTTCA
83573904 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
83573947 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
83573990 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
83574033 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
83574076 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
83574093 TTGAAATGCA
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 145 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:83574108 original size:29 final size:29
Alignment explanation
Indices: 83574074--83574147 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
83574064 GTTGTGAGAT
* *
83574074 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
83574103 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83574132 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83574148 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83574587 original size:40 final size:40
Alignment explanation
Indices: 83574541--83574815 Score: 361
Period size: 40 Copynumber: 6.9 Consensus size: 40
83574531 GTTACTAAAC
* *
83574541 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
* *
83574581 CTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
*
83574621 CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
* * *
83574661 CCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
* *
83574701 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
* ** * * * *
83574741 CCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
* * * *
83574781 CCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
83574816 CGTGTATTCG
Statistics
Matches: 207, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 207 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATAT
Found at i:83577592 original size:25 final size:25
Alignment explanation
Indices: 83577564--83577642 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
83577554 CTAATGGCCG
83577564 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
*** ****
83577589 ATGTGAT-AATGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
83577611 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
83577636 ATGTGAT
1 ATGTGAT
83577643 AAGCCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:83577614 original size:47 final size:46
Alignment explanation
Indices: 83577552--83577820 Score: 448
Period size: 47 Copynumber: 5.7 Consensus size: 46
83577542 TGATAGTATG
83577552 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
83577598 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 -GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
83577645 GCCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 G-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
83577692 GCCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 G-CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
83577739 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGG
1 -GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA-A
83577789 GCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GCCTAATGGCCGATGTGATGAATGTGA-AAGT
83577821 CCCGAAGGGC
Statistics
Matches: 213, Mismatches: 3, Indels: 9
0.95 0.01 0.04
Matches are distributed among these distances:
46 1 0.00
47 167 0.78
48 1 0.00
49 40 0.19
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.30
Consensus pattern (46 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:83577994 original size:37 final size:37
Alignment explanation
Indices: 83577938--83578016 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
83577928 CCGAGCTCTA
* * *
83577938 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
83577975 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
83578012 AAGAC
1 AAGAC
83578017 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:83581045 original size:45 final size:45
Alignment explanation
Indices: 83580900--83581046 Score: 111
Period size: 45 Copynumber: 3.2 Consensus size: 45
83580890 TAGGGGTGTT
*
83580900 ACACCTCAATTACAATGAAAAAACATCTCAA-TTTCTAGCAACTAA
1 ACACCTCAATTACAGTGAAAAAACATCTCAATTTTC-AGCAACTAA
* * *** * ** * ** *
83580945 ACACTTCAATT--TGCTGCACTTTAACATCTTAATTAACAACATTTAT
1 ACACCTCAATTACAG-TG-A-AAAAACATCTCAATTTTCAGCAACTAA
83580991 ACACCTCAATTACAGTGAAAAAACATCTCAATTTTCAGCAACTAA
1 ACACCTCAATTACAGTGAAAAAACATCTCAATTTTCAGCAACTAA
*
83581036 ACACTTCAATT
1 ACACCTCAATT
83581047 TGCAGTACTT
Statistics
Matches: 70, Mismatches: 26, Indels: 12
0.65 0.24 0.11
Matches are distributed among these distances:
44 2 0.03
45 38 0.54
46 25 0.36
47 4 0.06
48 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (45 bp):
ACACCTCAATTACAGTGAAAAAACATCTCAATTTTCAGCAACTAA
Found at i:83581092 original size:91 final size:91
Alignment explanation
Indices: 83580899--83581080 Score: 287
Period size: 91 Copynumber: 2.0 Consensus size: 91
83580889 TTAGGGGTGT
*
83580899 TACACCTCAATTACAATGAAAAAACATCTCAATTTCTAGCAACTAAACACTTCAATTTGCTGCAC
1 TACACCTCAATTACAATGAAAAAACATCTCAATTTCTAGCAACTAAACACTTCAATTTGCAGCAC
*
83580964 TTTAACATCTTAATTAACAACATTTA
66 TTAAACATCTTAATTAACAACATTTA
* *
83580990 TACACCTCAATTACAGTGAAAAAACATCTCAATTT-TCAGCAACTAAACACTTCAATTTGCAGTA
1 TACACCTCAATTACAATGAAAAAACATCTCAATTTCT-AGCAACTAAACACTTCAATTTGCAGCA
*
83581054 CTTAAACA-CTTTAATTTACAACATTTA
65 CTTAAACATC-TTAATTAACAACATTTA
83581081 AGCACTTCAA
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
90 2 0.02
91 82 0.98
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.32
Consensus pattern (91 bp):
TACACCTCAATTACAATGAAAAAACATCTCAATTTCTAGCAACTAAACACTTCAATTTGCAGCAC
TTAAACATCTTAATTAACAACATTTA
Found at i:83581113 original size:69 final size:69
Alignment explanation
Indices: 83581018--83581334 Score: 320
Period size: 69 Copynumber: 4.6 Consensus size: 69
83581008 AAAAAACATC
* ** * * *
83581018 TCAATTTTCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTTAATTTACAACATTTAAG
1 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
83581083 CACT
66 CACT
* * *
83581087 TCAATTTAAAGCATTTAAACACTTCAATTTGCAGCACTTGAACACTTCAATTTACAACATTTAAG
1 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
83581152 CACT
66 CACT
* ** * * * * * *
83581156 TCAATTTGCAGCACTTT-AACA-TCTCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TA
1 TCAATTTACAGCA-TTTAAACACT-TCAATTTGCAGCACTTAAACACTTCAATTTACAAC-ATTT
83581217 AAACA-T
63 AAACACT
* ** *
83581223 CTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAA
1 -TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAA
*
83581288 ACAAT
65 ACACT
* * * *
83581293 TTAATTTACAGTATTTAAACACTTCAATTTACAGCATTTAAA
1 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAA
83581335 TAGCAACAAC
Statistics
Matches: 200, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
67 2 0.01
68 49 0.25
69 145 0.73
70 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (69 bp):
TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
CACT
Found at i:83581281 original size:206 final size:206
Alignment explanation
Indices: 83580946--83581328 Score: 658
Period size: 206 Copynumber: 1.9 Consensus size: 206
83580936 AGCAACTAAA
* * *
83580946 CACTTCAATTTGCTGCACTTTAACATCTTAATTAACAACATTTATACACCTCAATTACAGTGAAA
1 CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGAAA
* *
83581011 AAACATCTCAATTTTCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTTAATTTACAAC
66 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
* * *
83581076 ATTTAAGCACTTCAATTTAAAGCATTTAAACACTTCAATTTGCAGCACTTGAACACTTCAATTTA
131 ATTTAAACAATTCAATTTAAAGCATTTAAACACTTCAATTTACAGCACTTGAACACTTCAATTTA
83581141 CAACATTTAAG
196 CAACATTTAAG
*
83581152 CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGATA
1 CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGAAA
83581217 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
66 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
* * *
83581282 ATTTAAACAATTTAATTTACAGTATTTAAACACTTCAATTTACAGCA
131 ATTTAAACAATTCAATTTAAAGCATTTAAACACTTCAATTTACAGCA
83581329 TTTAAATAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
206 165 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (206 bp):
CACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGAAA
AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAAC
ATTTAAACAATTCAATTTAAAGCATTTAAACACTTCAATTTACAGCACTTGAACACTTCAATTTA
CAACATTTAAG
Found at i:83581331 original size:23 final size:23
Alignment explanation
Indices: 83580942--83581334 Score: 284
Period size: 23 Copynumber: 17.2 Consensus size: 23
83580932 TTCTAGCAAC
* *
83580942 TAAACACTTCAATTTGCTGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
83580966 T-AACATCTT-AATTAACAACATT
1 TAAACA-CTTCAATTTACAGCATT
* * *
83580988 TATACACCTCAA-TTACAG--TG
1 TAAACACTTCAATTTACAGCATT
* * * **
83581008 AAAAAACATCTCAATTTTCAGCAAC
1 TAAACAC-T-TCAATTTACAGCATT
* * *
83581033 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
* *
83581056 TAAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
83581079 TAAGCACTTCAATTTAAAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
83581102 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
83581125 TGAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
83581148 TAAGCACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
83581172 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* *
83581194 TATACACCTCAA-TTACAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * **
83581216 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
83581239 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
83581262 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* * *
83581285 TAAACAATTTAATTTACAGTATT
1 TAAACACTTCAATTTACAGCATT
83581308 TAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
83581331 TAAA
1 TAAA
83581335 TAGCAACAAC
Statistics
Matches: 280, Mismatches: 72, Indels: 35
0.72 0.19 0.09
Matches are distributed among these distances:
20 5 0.02
22 32 0.11
23 229 0.82
24 9 0.03
25 5 0.02
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:83583250 original size:21 final size:18
Alignment explanation
Indices: 83583224--83583262 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
83583214 CAATTATACA
83583224 TAAAATGCTTAATATCATGAC
1 TAAAATG-TT-ATAT-ATGAC
83583245 TAAAATGTTATATATGAC
1 TAAAATGTTATATATGAC
83583263 CACTAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 2 0.11
21 7 0.39
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (18 bp):
TAAAATGTTATATATGAC
Found at i:83585023 original size:40 final size:40
Alignment explanation
Indices: 83584909--83585116 Score: 247
Period size: 40 Copynumber: 5.2 Consensus size: 40
83584899 TAAAAAAATA
* * *
83584909 TTTT-CGGCATTTATGAAAAAATGCCGCTATTGCTTTAGC
1 TTTTGCGGCATTTATGCAAAAACGCCGCTATTGCTTTACC
* * *
83584948 TTTTGCGGCGTTTATGAGAAAAACACCGCTATTGCTTTACC
1 TTTTGCGGCATTTATG-CAAAAACGCCGCTATTGCTTTACC
* * *
83584989 TTTTGTGGCATTTATGCAAAAATGCCGCTCTTGCTTTACC
1 TTTTGCGGCATTTATGCAAAAACGCCGCTATTGCTTTACC
* * * * *
83585029 TTTTTCAGCGTTTATGCAAAAACGCCACTAATGCTTTACC
1 TTTTGCGGCATTTATGCAAAAACGCCGCTATTGCTTTACC
* * *
83585069 TTTTACGGCATTTATTCAAAAACGCCGCTAATGCTTTACC
1 TTTTGCGGCATTTATGCAAAAACGCCGCTATTGCTTTACC
83585109 TTTTGCGG
1 TTTTGCGG
83585117 TGTTTTTAAT
Statistics
Matches: 142, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
39 4 0.03
40 104 0.73
41 34 0.24
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (40 bp):
TTTTGCGGCATTTATGCAAAAACGCCGCTATTGCTTTACC
Found at i:83599851 original size:20 final size:20
Alignment explanation
Indices: 83599817--83599861 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
83599807 AGGGATTAAA
*
83599817 ATGAAAAGTTGTGAAATTTG
1 ATGAAAAATTGTGAAATTTG
* * *
83599837 ATGAAAAATTTTGAATTTTT
1 ATGAAAAATTGTGAAATTTG
83599857 ATGAA
1 ATGAA
83599862 TACATGTCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (20 bp):
ATGAAAAATTGTGAAATTTG
Found at i:83602606 original size:41 final size:41
Alignment explanation
Indices: 83602562--83602734 Score: 242
Period size: 41 Copynumber: 4.2 Consensus size: 41
83602552 ACCAAAAATG
* * *
83602562 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACG
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
*
83602603 CCGCTAAAAACTAGAGCATTAGCGGCGCTTTCGATAAAACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
*
83602644 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTC-ATTAATACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGA-TAAAACA
* *
83602685 CTGCTAAAAACCAAAGCATTAGCGGCGCTTTC-ATTAAAACA
1 CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGA-TAAAACA
*
83602726 CCGATAAAA
1 CCGCTAAAA
83602735 GTCAGGTAAT
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 1 0.01
41 119 0.99
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (41 bp):
CCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACA
Found at i:83602813 original size:54 final size:54
Alignment explanation
Indices: 83602755--83602861 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
83602745 CCCTAAAATC
* *
83602755 CTAAA-CCCTAAAAAATAATAAACACTAATCTATAACCCCTAAAACACTAAACCT
1 CTAAATCCC-AAAAAACAATAAACACTAAACTATAACCCCTAAAACACTAAACCT
* ** * *
83602809 CTAAATCCCAAAAACCCTTAAACACTAAACTATAACCTCTAAAACCCTAAACC
1 CTAAATCCCAAAAAACAATAAACACTAAACTATAACCCCTAAAACACTAAACC
83602862 CCAAAAAAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.20
Consensus pattern (54 bp):
CTAAATCCCAAAAAACAATAAACACTAAACTATAACCCCTAAAACACTAAACCT
Found at i:83615829 original size:49 final size:49
Alignment explanation
Indices: 83615757--83615888 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 49
83615747 GCACATCATA
* * * * *
83615757 GTCGATGTCATGTTCCAGGCAGGTTTTACACTGAATTTCATATATTGAG-
1 GTCGATGTCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCG-GT
* * * *
83615806 G-CTGATGTCGTGTCCCAGACAGGTCTTGCACTGACTCTCATCTATCGGT
1 GTC-GATGTCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGGT
*
83615855 GTCGATGCCATGTCCCAGACAGGTCTTACACTGA
1 GTCGATGTCATGTCCCAGACAGGTCTTACACTGA
83615889 CACACAACAA
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
48 2 0.03
49 65 0.96
50 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.31
Consensus pattern (49 bp):
GTCGATGTCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGGT
Found at i:83616006 original size:46 final size:45
Alignment explanation
Indices: 83615941--83616072 Score: 169
Period size: 46 Copynumber: 2.9 Consensus size: 45
83615931 AGCTTGTATA
* *
83615941 TCTCAAGGCCGATGCATGTCTCAGACATGTCTTACACTAGCTCTC
1 TCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
* *
83615986 GTCTCAATGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTC
1 -TCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
*
83616032 -AT-AATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
1 TCTCAA--T-GCCGATGCATGTCCCAGACATGTCTTACACTAG
83616073 TACACATATC
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 72 0.95
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
TCTCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
Found at i:83621250 original size:48 final size:49
Alignment explanation
Indices: 83621196--83621333 Score: 154
Period size: 48 Copynumber: 2.8 Consensus size: 49
83621186 ATCACTTAAC
* * * * *
83621196 GATGCCGAAGCCATATCCCTGATATGGTTTTATACGGGATCACATATTG
1 GATGCCGATGCCATGTCCCTGATATGGTCTTACACGGGATCACATATCG
* * * * *
83621245 G-TGCCGATGTCATGTCCCAGACATGGTCTTACACGGGATCTCATCTCG
1 GATGCCGATGCCATGTCCCTGATATGGTCTTACACGGGATCACATATCG
*
83621293 GATGCCGATGCCATGT-CCTAGATATGGTCTTACACAGGATC
1 GATGCCGATGCCATGTCCCT-GATATGGTCTTACACGGGATC
83621334 TCATTAACCA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
48 40 0.55
49 33 0.45
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (49 bp):
GATGCCGATGCCATGTCCCTGATATGGTCTTACACGGGATCACATATCG
Found at i:83621308 original size:49 final size:49
Alignment explanation
Indices: 83621196--83621337 Score: 169
Period size: 49 Copynumber: 2.9 Consensus size: 49
83621186 ATCACTTAAC
* * * * * * *
83621196 GATGCCGAAGCCATATCCCTGATATGGTTTTATACGGGATCACATATTG
1 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATATCG
* * *
83621245 G-TGCCGATGTCATGTCCCAGACATGGTCTTACACGGGATCTCATCTCG
1 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATATCG
* *
83621293 GATGCCGATGCCATGTCCTAGATATGGTCTTACACAGGATCTCAT
1 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
83621338 TAACCATGGT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 38 0.49
49 40 0.51
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (49 bp):
GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATATCG
Found at i:83630667 original size:46 final size:46
Alignment explanation
Indices: 83630617--83630792 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83630607 TGGTTGAGCA
83630617 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83630663 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83630708 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83630756 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83630793 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83630773 original size:93 final size:93
Alignment explanation
Indices: 83630614--83630785 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83630604 GGATGGTTGA
* *
83630614 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83630679 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83630707 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83630772 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83630786 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83634416 original size:91 final size:92
Alignment explanation
Indices: 83634247--83634444 Score: 254
Period size: 91 Copynumber: 2.2 Consensus size: 92
83634237 TTGGATGCAA
* *
83634247 CCAACAATTGAATAGAACCAATTGCAACAGCCACCAATTGCCGAAAAATAAAAAATAATAGCAGC
1 CCAACAATTGAATAGAACCAATTGCAACAGCCACCAAATGCCGAAAAACAAAAAATAATAGCAGC
83634312 AAGGAACAATTGCAAAGACCTGAAGAG
66 AAGGAACAATTGCAAAGACCTGAAGAG
* * * ** * *
83634339 CCAGCGATTGAATAGAACCAATT-TAGTAGCCACCAAATGCCGAAAAACAAAAAATAATAGTAGT
1 CCAACAATTGAATAGAACCAATTGCAACAGCCACCAAATGCCGAAAAACAAAAAATAATAGCAGC
* * * * **
83634403 AGGGAGCAGTTGCAGAGATGTGAAGAG
66 AAGGAACAATTGCAAAGACCTGAAGAG
83634430 CCAACAATTGAATAG
1 CCAACAATTGAATAG
83634445 CAAAACAGTT
Statistics
Matches: 89, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
91 68 0.76
92 21 0.24
ACGTcount: A:0.46, C:0.18, G:0.20, T:0.16
Consensus pattern (92 bp):
CCAACAATTGAATAGAACCAATTGCAACAGCCACCAAATGCCGAAAAACAAAAAATAATAGCAGC
AAGGAACAATTGCAAAGACCTGAAGAG
Found at i:83634910 original size:10 final size:10
Alignment explanation
Indices: 83634895--83634934 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
83634885 CAAAAATCAC
83634895 AAAATAATTT
1 AAAATAATTT
83634905 AAAATAATTTT
1 AAAATAA-TTT
*
83634916 CAAA-AATTT
1 AAAATAATTT
83634925 AAAATAATTT
1 AAAATAATTT
83634935 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 6 0.23
10 14 0.54
11 6 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATAATTT
Found at i:83634925 original size:20 final size:20
Alignment explanation
Indices: 83634900--83634940 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
83634890 ATCACAAAAT
83634900 AATTTAAAATAATTTTCAAA
1 AATTTAAAATAATTTTCAAA
*
83634920 AATTTAAAATAATTTTTAAA
1 AATTTAAAATAATTTTCAAA
83634940 A
1 A
83634941 TTTTGAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTTAAAATAATTTTCAAA
Found at i:83641765 original size:14 final size:14
Alignment explanation
Indices: 83641746--83641773 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83641736 ATGTCACTAT
83641746 AACAAATTTAACAA
1 AACAAATTTAACAA
83641760 AACAAATTTAACAA
1 AACAAATTTAACAA
83641774 TATTAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (14 bp):
AACAAATTTAACAA
Done.