Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 261 of 318
Found at i:83642106 original size:15 final size:14
Alignment explanation
Indices: 83642071--83642109 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
83642061 TTGGGAATAT
83642071 AAAATTTCAAATTAA
1 AAAATTT-AAATTAA
*
83642086 ATAATTTAAATTAA
1 AAAATTTAAATTAA
*
83642100 AAAAATTAAA
1 AAAATTTAAA
83642110 ATGAATGAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAATTTAAATTAA
Found at i:83647819 original size:21 final size:21
Alignment explanation
Indices: 83647795--83647834 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
83647785 CCATATTTTC
*
83647795 TTTTATTTCACATTTTTACTA
1 TTTTATTTCACACTTTTACTA
* *
83647816 TTTTGTTTTACACTTTTAC
1 TTTTATTTCACACTTTTAC
83647835 AAACAAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.15, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTATTTCACACTTTTACTA
Found at i:83648315 original size:33 final size:33
Alignment explanation
Indices: 83648273--83648336 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
83648263 GGTCAAATTG
*
83648273 TTAATTAGGACCCTTTAATTCAATATCTAATGC
1 TTAATTAGGACCCTCTAATTCAATATCTAATGC
83648306 TTAATTAGGACCCTCTAATTCAATATCTAAT
1 TTAATTAGGACCCTCTAATTCAATATCTAAT
83648337 ACAATTTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (33 bp):
TTAATTAGGACCCTCTAATTCAATATCTAATGC
Found at i:83656681 original size:48 final size:47
Alignment explanation
Indices: 83656563--83656729 Score: 192
Period size: 48 Copynumber: 3.4 Consensus size: 47
83656553 ACAATTCATT
** *
83656563 TCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCTGATGCAATG
1 TCCCAGACATGGTCTTACACTGGCT-TCATA-A-CAATGCTGATGCCATG
**
83656613 TCCCAGACATGGTCTTACACTGGCTTACATAACAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTT-CATAACAATGCTGATGCCATG
* *
83656661 TCCCAGACATGGTCTTACACTAAGCCTCATAACAATGCTGATGCCATGG
1 TCCCAGACATGGTCTTACACT-GGCTTCATAACAATGCTGATGCCAT-G
* *
83656710 T-CCAAACATAGTCTTACACT
1 TCCCAGACATGGTCTTACACT
83656730 AGCTCGCATA
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
48 67 0.65
49 7 0.07
50 29 0.28
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACTGGCTTCATAACAATGCTGATGCCATG
Found at i:83667231 original size:14 final size:14
Alignment explanation
Indices: 83667212--83667239 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83667202 ATTCGGTAAA
83667212 TTCCTTAAATTACT
1 TTCCTTAAATTACT
83667226 TTCCTTAAATTACT
1 TTCCTTAAATTACT
83667240 AAAAAAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
TTCCTTAAATTACT
Found at i:83669138 original size:3 final size:3
Alignment explanation
Indices: 83669130--83669155 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
83669120 GGACCCACAC
83669130 CCA CCA CCA CCA CCA CCA CCA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CC
83669156 TAGTCATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:83676285 original size:22 final size:22
Alignment explanation
Indices: 83676251--83676292 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
83676241 TATATTCCTA
*
83676251 AATATATGCCTAAAATATATAC
1 AATATATGCCTAAAAGATATAC
**
83676273 AATATATTTCTAAAAGATAT
1 AATATATGCCTAAAAGATAT
83676293 CCCATTATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (22 bp):
AATATATGCCTAAAAGATATAC
Found at i:83682064 original size:22 final size:22
Alignment explanation
Indices: 83682036--83682077 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
83682026 TATATTCCTA
*
83682036 AATATATGCCTAAAATATATAC
1 AATATATGCCTAAAAGATATAC
*
83682058 AATATATTCCTAAAAGATAT
1 AATATATGCCTAAAAGATAT
83682078 CCCATTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (22 bp):
AATATATGCCTAAAAGATATAC
Found at i:83684010 original size:49 final size:50
Alignment explanation
Indices: 83683930--83684162 Score: 209
Period size: 49 Copynumber: 4.7 Consensus size: 50
83683920 TGTTATTGTG
* *
83683930 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGGTAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * **
83683980 -GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * ** * * * * **
83684030 CGATCATGTGTGTAGTGCTAAGTGCAGGCAACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
83684080 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
83684130 -GGTCGCATGTGTAGTACTATGTGCGGGCCACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
83684163 TGCATACCAG
Statistics
Matches: 141, Mismatches: 40, Indels: 5
0.76 0.22 0.03
Matches are distributed among these distances:
49 66 0.47
50 42 0.30
51 33 0.23
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:83684206 original size:150 final size:150
Alignment explanation
Indices: 83683930--83684212 Score: 365
Period size: 150 Copynumber: 1.9 Consensus size: 150
83683920 TGTTATTGTG
* * *
83683930 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGGTAATTGGTCGCATGTGTAGT
1 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
* * * ***
83683995 ACTAAGTACAGGCTACTATGCGTACCCAATAACTTCGATCATGTGTGTAGTGCTAAGTGCAGGCA
66 ACTAAGTACAGGCCACTATGCATACCCAATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCA
83684060 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
*
83684080 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
* * * * * * *
83684145 ACTATGTGCGGGCCACTATGCATA-CCAGATAGCTTTGGTTACAAGTGTG-A-AAATATGTGCAG
66 ACTAAGTACAGGCCACTATGCATACCCA-ATAAC-TTCGAT-CAAGTGTGTAGAAATAAGTGCAG
83684207 GCAACT
128 GCAACT
83684213 GAGTATCATA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
149 3 0.03
150 98 0.87
151 5 0.04
152 7 0.06
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTAACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTACAGGCCACTATGCATACCCAATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCA
ACTACGTGTATCAGATGGTT
Found at i:83688133 original size:17 final size:19
Alignment explanation
Indices: 83688101--83688135 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
83688091 ACGTTTGGAT
83688101 ACTAAATTTAGTAAAAAGG
1 ACTAAATTTAGTAAAAAGG
83688120 ACTAAA-TT-GTAAAAAG
1 ACTAAATTTAGTAAAAAG
83688136 TGCAAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.26
Consensus pattern (19 bp):
ACTAAATTTAGTAAAAAGG
Found at i:83689255 original size:49 final size:49
Alignment explanation
Indices: 83689179--83689352 Score: 206
Period size: 49 Copynumber: 3.5 Consensus size: 49
83689169 TGAGGTCACG
*
83689179 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCGGATAATTGGTAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCA
* * * ** * *
83689228 TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATGGTGAGGTCA-CG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT-TGGT-AGCA
* * *
83689278 TATGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCA
* *
83689327 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
83689353 TGCATACCAG
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
49 61 0.61
50 38 0.38
51 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCA
Found at i:83689344 original size:99 final size:99
Alignment explanation
Indices: 83689168--83689352 Score: 316
Period size: 99 Copynumber: 1.9 Consensus size: 99
83689158 ATGATCTATT
* *
83689168 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCGGATAATTGGTAGCATGTGT
1 GTGAGGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGTGT
*
83689233 AGTACTAAGTGCAGGCTACTACGTGCATCAGATG
66 AGTACTAAGTGCAAGCTACTACGTGCATCAGATG
* *
83689267 GTGAGGTCACGTATGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATAATTGGTTGCATGTGT
1 GTGAGGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGTGT
*
83689332 AGTACTATGTGCAAGCTACTA
66 AGTACTAAGTGCAAGCTACTA
83689353 TGCATACCAG
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (99 bp):
GTGAGGTCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTAGCATGTGT
AGTACTAAGTGCAAGCTACTACGTGCATCAGATG
Found at i:83693819 original size:22 final size:22
Alignment explanation
Indices: 83693778--83693852 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
83693768 TACCTAGTAA
* * *
83693778 GAGCTTATTGTTTCAACTCATTG
1 GAGCTTACTG-TTCAGCTCAATG
*
83693801 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATG
* *
83693823 GAGCTTACTATTCAGCTCAAAG
1 GAGCTTACTGTTCAGCTCAATG
83693845 GAGCTTAC
1 GAGCTTAC
83693853 CAACCATCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 36 0.80
23 9 0.20
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATG
Found at i:83696159 original size:27 final size:27
Alignment explanation
Indices: 83696141--83696472 Score: 332
Period size: 27 Copynumber: 12.1 Consensus size: 27
83696131 AGGCATCCCC
83696141 TTTATAGATCACCACAAAGGCTTCCTT
1 TTTATAGATCACCACAAAGGCTTCCTT
*
83696168 TTTATAGATCACCACAAAGACTTCCTT
1 TTTATAGATCACCACAAAGGCTTCCTT
* * *
83696195 TTTAGAGATCGCCACAAAGGCTTCCTA
1 TTTATAGATCACCACAAAGGCTTCCTT
* *
83696222 TTCATAGATTC-CCACAAAGGCTTCATT
1 TTTATAGA-TCACCACAAAGGCTTCCTT
* *
83696249 TTCATAGATAGCCACACCACAAAGGCTTTCTT
1 TTTATAGAT-----CACCACAAAGGCTTCCTT
** *
83696281 TTTATAGATTGCTACAAAGGCTTCCTT
1 TTTATAGATCACCACAAAGGCTTCCTT
* *
83696308 TTCA-ATGAT-AGCTACAAAGGCTTCCTT
1 TTTATA-GATCA-CCACAAAGGCTTCCTT
* *
83696335 TTCATAGATCACTACAAAGGCTTCCTT
1 TTTATAGATCACCACAAAGGCTTCCTT
* *
83696362 TTCATTGAT-AGCCACAAAGGCTTCCTT
1 TTTATAGATCA-CCACAAAGGCTTCCTT
* *
83696389 TTCATAGATCACTACAAAGGCTTCCTT
1 TTTATAGATCACCACAAAGGCTTCCTT
* *
83696416 TTCATTGAT-AGCCACAAAGGCTTCCTT
1 TTTATAGATCA-CCACAAAGGCTTCCTT
* *
83696443 TTCATAGATCACCATAAAGGCTTCCTT
1 TTTATAGATCACCACAAAGGCTTCCTT
83696470 TTT
1 TTT
83696473 TGGCCTATTT
Statistics
Matches: 263, Mismatches: 27, Indels: 30
0.82 0.08 0.09
Matches are distributed among these distances:
26 4 0.02
27 230 0.87
28 6 0.02
31 1 0.00
32 22 0.08
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (27 bp):
TTTATAGATCACCACAAAGGCTTCCTT
Found at i:83696219 original size:54 final size:54
Alignment explanation
Indices: 83696141--83696472 Score: 382
Period size: 54 Copynumber: 6.1 Consensus size: 54
83696131 AGGCATCCCC
* *
83696141 TTTATAGATCA-CCACAAAGGCTTCCTTTTTATAGATCACCACAAAGACTTCCTT
1 TTTATAGAT-AGCCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTT
* * * *
83696195 TTTAGAGATCGCCACAAAGGCTTCCTATTCATAGATTC-CCACAAAGGCTTCATT
1 TTTATAGATAGCCACAAAGGCTTCCTTTTCATAGA-TCACCACAAAGGCTTCCTT
* * * ** *
83696249 TTCATAGATAGCCACACCACAAAGGCTTTCTTTTTATAGATTGCTACAAAGGCTTCCTT
1 TTTATAGATAG-----CCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTT
* * *
83696308 TTCA-ATGATAGCTACAAAGGCTTCCTTTTCATAGATCACTACAAAGGCTTCCTT
1 TTTATA-GATAGCCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTT
* * *
83696362 TTCATTGATAGCCACAAAGGCTTCCTTTTCATAGATCACTACAAAGGCTTCCTT
1 TTTATAGATAGCCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTT
* * *
83696416 TTCATTGATAGCCACAAAGGCTTCCTTTTCATAGATCACCATAAAGGCTTCCTT
1 TTTATAGATAGCCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTT
83696470 TTT
1 TTT
83696473 TGGCCTATTT
Statistics
Matches: 243, Mismatches: 25, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
54 195 0.80
55 2 0.01
58 2 0.01
59 44 0.18
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (54 bp):
TTTATAGATAGCCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTT
Found at i:83696264 original size:81 final size:81
Alignment explanation
Indices: 83696144--83696471 Score: 385
Period size: 81 Copynumber: 4.0 Consensus size: 81
83696134 CATCCCCTTT
* * * *
83696144 ATAGATCACCACAAAGGCTTCCTTTTTATAGATCACCACAAAGACTTCCTTTTTAGAGATCGCCA
1 ATAGATCACCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTTTTCATAGATCGCCA
*
83696209 CAAAGGCTTCCTATTC
66 CAAAGGCTTCCTTTTC
* * *
83696225 ATAGATTC-CCACAAAGGCTTCATTTTCATAGATAGCCACACCACAAAGGCTTTCTTTTTATAGA
1 ATAGA-TCACCACAAAGGCTTCCTTTTCATAGAT-----CACCACAAAGGCTTCCTTTTCATAGA
* *
83696289 TTGCTACAAAGGCTTCCTTTTC
60 TCGCCACAAAGGCTTCCTTTTC
* * * *
83696311 A-ATGAT-AGCTACAAAGGCTTCCTTTTCATAGATCACTACAAAGGCTTCCTTTTCATTGATAGC
1 ATA-GATCA-CCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTTTTCATAGATCGC
83696374 CACAAAGGCTTCCTTTTC
64 CACAAAGGCTTCCTTTTC
* * *
83696392 ATAGATCACTACAAAGGCTTCCTTTTCATTGAT-AGCCACAAAGGCTTCCTTTTCATAGATCACC
1 ATAGATCACCACAAAGGCTTCCTTTTCATAGATCA-CCACAAAGGCTTCCTTTTCATAGATCGCC
*
83696456 ATAAAGGCTTCCTTTT
65 ACAAAGGCTTCCTTTT
83696472 TTGGCCTATT
Statistics
Matches: 213, Mismatches: 22, Indels: 24
0.82 0.08 0.09
Matches are distributed among these distances:
80 1 0.00
81 138 0.65
82 4 0.02
85 2 0.01
86 68 0.32
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (81 bp):
ATAGATCACCACAAAGGCTTCCTTTTCATAGATCACCACAAAGGCTTCCTTTTCATAGATCGCCA
CAAAGGCTTCCTTTTC
Found at i:83709435 original size:46 final size:46
Alignment explanation
Indices: 83709385--83709554 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
83709375 TTGAGCATCC
83709385 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
* * * * ** *
83709431 GAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATGTAAATAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT--G--TCA
* * * * *
83709478 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
*
83709524 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83709555 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.56
47 28 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
Found at i:83709538 original size:93 final size:93
Alignment explanation
Indices: 83709379--83709549 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83709369 GGATGGTTGA
* * *
83709379 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCAGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCAGAACTCGTTGAGT
*
83709444 TGAGTCTGAGTTCGTGAAATGTAAATAG
66 TGAGTCCGAGTTCGTGAAATGTAAATAG
* * *
83709472 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCAGAACTCGTTGAGT
83709537 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
83709550 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCAGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAAATAG
Found at i:83716220 original size:27 final size:27
Alignment explanation
Indices: 83716179--83716368 Score: 176
Period size: 27 Copynumber: 7.1 Consensus size: 27
83716169 GGTCGTTAAG
*
83716179 ACCCC-AGTTTGTAAAATTACCAAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
*
83716205 ACCCCTAGTTTATAAAATTACCGAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
*
83716232 ACCCCTAATTTGTAAAATTACCGAAAT
1 ACCCCTAGTTTGTAAAATTACCGAAAT
* * *
83716259 A-CCCTCGATTTATAAAATTATCGAAAT
1 ACCCCTAG-TTTGTAAAATTACCGAAAT
* *
83716286 ACCGCC-AATTT-TAAAATTATCGAAAT
1 ACC-CCTAGTTTGTAAAATTACCGAAAT
* **
83716312 A-CCCTCGATTTGTAAAATTACTAAAAT
1 ACCCCTAG-TTTGTAAAATTACCGAAAT
* * *
83716339 A-ACCTTGTACTGTAAAATTACCGAAAT
1 ACCCCTAGT-TTGTAAAATTACCGAAAT
83716366 ACC
1 ACC
83716369 TTGTAGTGTA
Statistics
Matches: 134, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.01
25 1 0.01
26 29 0.22
27 99 0.74
28 1 0.01
29 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
ACCCCTAGTTTGTAAAATTACCGAAAT
Found at i:83716328 original size:53 final size:54
Alignment explanation
Indices: 83716186--83716368 Score: 212
Period size: 54 Copynumber: 3.4 Consensus size: 54
83716176 AAGACCCCAG
* *
83716186 TTTGTAAAATTACCAAAATACCC-CTAGTTTATAAAATTACCGAAATACCCCTAA
1 TTTGTAAAATTACCGAAATACCCTCGA-TTTATAAAATTACCGAAATACCCCTAA
*
83716240 TTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTATCGAAATACCGCC-AA
1 TTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTACCGAAATACC-CCTAA
* * ** * **
83716294 TTT-TAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAAATA-ACCTTG
1 TTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTACCGAAATACCCCTAA
*
83716346 TACTGTAAAATTACCGAAATACC
1 T-TTGTAAAATTACCGAAATACC
83716369 TTGTAGTGTA
Statistics
Matches: 111, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
51 2 0.02
52 1 0.01
53 39 0.35
54 65 0.59
55 4 0.04
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCGAAATACCCTCGATTTATAAAATTACCGAAATACCCCTAA
Found at i:83716355 original size:80 final size:81
Alignment explanation
Indices: 83716188--83716368 Score: 208
Period size: 80 Copynumber: 2.2 Consensus size: 81
83716178 GACCCCAGTT
* *
83716188 TGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCGAAATACCCCTAATTTGTAAAATTAC
1 TGTAAAATTACCGAAATACCCCTAATTTATAAAATTACCGAAATACCCCTAATTTGTAAAATTAC
* * *
83716253 CGAAATACCCTCGATT
66 CAAAATAACCTCGATC
* * * *
83716269 TATAAAATTATCGAAATACCGCC-AATTT-TAAAATTATCGAAATA-CCCTCGATTTGTAAAATT
1 TGTAAAATTACCGAAATACC-CCTAATTTATAAAATTACCGAAATACCCCT-AATTTGTAAAATT
* *
83716331 ACTAAAATAACCTTG-TAC
64 ACCAAAATAACCTCGAT-C
83716349 TGTAAAATTACCGAAATACC
1 TGTAAAATTACCGAAATACC
83716369 TTGTAGTGTA
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.06
80 56 0.67
81 21 0.25
82 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
TGTAAAATTACCGAAATACCCCTAATTTATAAAATTACCGAAATACCCCTAATTTGTAAAATTAC
CAAAATAACCTCGATC
Found at i:83716378 original size:26 final size:26
Alignment explanation
Indices: 83716322--83716401 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
83716312 ACCCTCGATT
** *
83716322 TGTAAAATTACTAAAATAACCTTGTAC
1 TGTAAAATTACCGAAAT-ACCTTGTAG
83716349 TGTAAAATTACCGAAATACCTTGTAG
1 TGTAAAATTACCGAAATACCTTGTAG
* *
83716375 TGTAAAATTATCGAAATATCCCTGTAG
1 TGTAAAATTACCGAAATA-CCTTGTAG
83716402 GGTAGAATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.53
27 22 0.47
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (26 bp):
TGTAAAATTACCGAAATACCTTGTAG
Found at i:83720782 original size:43 final size:42
Alignment explanation
Indices: 83720688--83720796 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 42
83720678 ACTTATGATT
*
83720688 TACATGTAAGACCAAGTCTGGGACATCGGCATCATATTTGAT
1 TACATGTAAGACCAAGTCTGGGACATCGGCATCATATTTGAG
*** ** *
83720730 TTTGTGTAAGACCCTGTCTGGGACAGT-GTCATCGATATTTGAG
1 TACATGTAAGACCAAGTCTGGGACA-TCGGCATC-ATATTTGAG
* *
83720773 TACATGTAAGACCACGCCTGGGAC
1 TACATGTAAGACCAAGTCTGGGAC
83720797 GTTGGCATTT
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
TACATGTAAGACCAAGTCTGGGACATCGGCATCATATTTGAG
Found at i:83726791 original size:37 final size:37
Alignment explanation
Indices: 83726730--83726832 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
83726720 CGAATAGTCC
*
83726730 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
83726767 CCACACGTAGTCATCGAGTTTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
83726804 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
83726833 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:83727035 original size:48 final size:48
Alignment explanation
Indices: 83726973--83727635 Score: 1101
Period size: 48 Copynumber: 13.8 Consensus size: 48
83726963 ATATACACAC
* * * * * *
83726973 ATCTCCTACATATTTCACATTAGCTATTCAGCTTTTCCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83727021 ATCTTATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83727069 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83727117 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83727165 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83727213 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATAGACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83727261 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83727309 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83727357 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83727405 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83727453 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
83727501 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
83727549 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
83727597 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
83727636 TACATATATA
Statistics
Matches: 578, Mismatches: 37, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 578 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83738006 original size:34 final size:35
Alignment explanation
Indices: 83737941--83738011 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 35
83737931 GTAACTATAA
** * *
83737941 TGGGCTATGGCCCACACTGATACTGTTATTGT-AT
1 TGGGCTAAAGCCCACACTGAAACTGTGATTGTCAT
83737975 TGGGCTAAAGCCCACACTGAAAACTG-GATTGTCAT
1 TGGGCTAAAGCCCACACTG-AAACTGTGATTGTCAT
83738010 TG
1 TG
83738012 ATATGGGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 22 0.71
35 9 0.29
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (35 bp):
TGGGCTAAAGCCCACACTGAAACTGTGATTGTCAT
Found at i:83749554 original size:30 final size:30
Alignment explanation
Indices: 83749520--83749580 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83749510 TCCTTAACTC
83749520 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
83749550 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
83749580 A
1 A
83749581 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:83752177 original size:3 final size:3
Alignment explanation
Indices: 83752169--83752197 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
83752159 TCCAGGTAAG
83752169 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
83752198 CATTCTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:83753100 original size:14 final size:14
Alignment explanation
Indices: 83753081--83753147 Score: 98
Period size: 14 Copynumber: 4.7 Consensus size: 14
83753071 CCAGAAAAGT
83753081 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
83753095 AAATCATTTTTCAAG
1 AAATCA-TTTTCCAG
*
83753110 AAATTATTTTCCAG
1 AAATCATTTTCCAG
83753124 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
83753138 AAAACATTTT
1 AAATCATTTT
83753148 ACCTGCAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 35 0.74
15 12 0.26
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:83757503 original size:30 final size:30
Alignment explanation
Indices: 83757467--83757526 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
83757457 TTCCCAAGCC
*
83757467 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
83757497 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
83757527 CACATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:83760293 original size:16 final size:16
Alignment explanation
Indices: 83760272--83760304 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83760262 TAGAGGTGGA
83760272 AGAAAATGG-GACAGGG
1 AGAAAA-GGAGACAGGG
83760288 AGAAAAGGAGACAGGG
1 AGAAAAGGAGACAGGG
83760304 A
1 A
83760305 ACTGCTCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.48, C:0.06, G:0.42, T:0.03
Consensus pattern (16 bp):
AGAAAAGGAGACAGGG
Found at i:83778121 original size:16 final size:15
Alignment explanation
Indices: 83778095--83778125 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
83778085 ATTAGATCAG
83778095 CAAAAGCTGAAAAGC
1 CAAAAGCTGAAAAGC
83778110 CAAAATGCTGAAAAGC
1 CAAAA-GCTGAAAAGC
83778126 TGAAAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.19, G:0.19, T:0.10
Consensus pattern (15 bp):
CAAAAGCTGAAAAGC
Found at i:83778384 original size:29 final size:28
Alignment explanation
Indices: 83778342--83778402 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
83778332 GTTAGCATGA
83778342 ATATAAGGTGATTTGGGCCTAACAGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
* *
83778370 ATATAAAGGTTATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAACAGGCC
83778399 ATAT
1 ATAT
83778403 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:83778415 original size:29 final size:29
Alignment explanation
Indices: 83778349--83778465 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
83778339 TGAATATAAG
* * * *
83778349 GTGATTTGGGCCTAACAGGCCATATAAAG
1 GTGAATTGGGCCTAATAAGCCATATAAAT
* * * *
83778378 GTTATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATAAGCCATATAAAT
* * * *
83778407 ATGAATTGGGTCTGATAAGCCATAAAAAT
1 GTGAATTGGGCCTAATAAGCCATATAAAT
*
83778436 GTGAATTGGGCCTAATAAGCCATATGAAT
1 GTGAATTGGGCCTAATAAGCCATATAAAT
83778465 G
1 G
83778466 AGATGGGCCA
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTAATAAGCCATATAAAT
Found at i:83790764 original size:7 final size:7
Alignment explanation
Indices: 83790754--83790784 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
83790744 TAGAGAGAAT
83790754 GATGAGG
1 GATGAGG
83790761 GATGAGG
1 GATGAGG
*
83790768 GATGATG
1 GATGAGG
83790775 GATGAGG
1 GATGAGG
83790782 GAT
1 GAT
83790785 CAAATGAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (7 bp):
GATGAGG
Found at i:83792843 original size:40 final size:40
Alignment explanation
Indices: 83792780--83792911 Score: 210
Period size: 40 Copynumber: 3.3 Consensus size: 40
83792770 ATTATTTTTG
* * * *
83792780 GCACTTAGTGTGCATATCAAGATAACTTCGGCTATATAAA
1 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
*
83792820 GCACTTAGTGTGCGTATTGAGATAGCTTCAGCTATATAAA
1 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
*
83792860 GCACTTAATGTGCGTATCGAGATAGCTTCAGCTATATAAA
1 GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
83792900 GCACTTAGTGTG
1 GCACTTAGTGTG
83792912 GGAGACTGGG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCGTATCGAGATAGCTTCAGCTATATAAA
Found at i:83792945 original size:41 final size:41
Alignment explanation
Indices: 83792800--83792976 Score: 146
Period size: 40 Copynumber: 4.4 Consensus size: 41
83792790 TGCATATCAA
* * * * * * *
83792800 GATAACTTCGGCTATATAAAGCACTTAGTGTGCG-TATTGA
1 GATAGCTTCAGCTATATAAAGCACTTAATGTGGGAGACTGG
* * *
83792840 GATAGCTTCAGCTATATAAAGCACTTAATGTGCG-TA-TCGA
1 GATAGCTTCAGCTATATAAAGCACTTAATGTGGGAGACT-GG
*
83792880 GATAGCTTCAGCTATATAAAGCACTTAGTGTGGGAGACTGG
1 GATAGCTTCAGCTATATAAAGCACTTAATGTGGGAGACTGG
* * * * **
83792921 GATAGCTTCGGCTATGA-AAGGCACTTAATGTGTGAGATTAT
1 GATAGCTTCAGCTAT-ATAAAGCACTTAATGTGGGAGACTGG
*
83792962 AATAGCTTCAGCTAT
1 GATAGCTTCAGCTAT
83792977 GCTTTGGCAC
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 67 0.57
41 47 0.40
42 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (41 bp):
GATAGCTTCAGCTATATAAAGCACTTAATGTGGGAGACTGG
Found at i:83792977 original size:41 final size:42
Alignment explanation
Indices: 83792841--83792977 Score: 131
Period size: 41 Copynumber: 3.4 Consensus size: 42
83792831 GCGTATTGAG
* * *
83792841 ATAGCTTCAGCTAT-ATAAAGCACTTAATGTGCG-TA-TCGA
1 ATAGCTTCAGCTATGATAAAGCACTTAATGTGGGAGACTAGA
* * *
83792880 GATAGCTTCAGCTAT-ATAAAGCACTTAGTGTGGGAGACTGGG
1 -ATAGCTTCAGCTATGATAAAGCACTTAATGTGGGAGACTAGA
* * * * *
83792922 ATAGCTTCGGCTATGA-AAGGCACTTAATGTGTGAGATTATA
1 ATAGCTTCAGCTATGATAAAGCACTTAATGTGGGAGACTAGA
83792963 ATAGCTTCAGCTATG
1 ATAGCTTCAGCTATG
83792978 CTTTGGCACT
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
40 31 0.39
41 46 0.57
42 3 0.04
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
ATAGCTTCAGCTATGATAAAGCACTTAATGTGGGAGACTAGA
Found at i:83797332 original size:18 final size:18
Alignment explanation
Indices: 83797305--83797347 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
83797295 CTTCAAAAAT
*
83797305 AATT-AAAAGAAAGATAA
1 AATTAAAAAGAAAAATAA
83797322 AATTAAAAAGAAAAATAA
1 AATTAAAAAGAAAAATAA
*
83797340 AAATAAAA
1 AATTAAAA
83797348 TTAAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (18 bp):
AATTAAAAAGAAAAATAA
Found at i:83797353 original size:18 final size:17
Alignment explanation
Indices: 83797305--83797357 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
83797295 CTTCAAAAAT
*
83797305 AATTAAAAGAAAGATAA
1 AATTAAAAGAAAAATAA
83797322 AATTAAAAAGAAAAATAA
1 AATT-AAAAGAAAAATAA
* **
83797340 AAATAAAATTAAAATAA
1 AATTAAAAGAAAAATAA
83797357 A
1 A
83797358 TAAATGGACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AATTAAAAGAAAAATAA
Found at i:83804855 original size:43 final size:42
Alignment explanation
Indices: 83804806--83804888 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
83804796 TCTTACATGT
* *
83804806 AATCAAATATCGATG-TGACTGTCCCAGACAGGGTCTTACACAA
1 AATCAAATA-CGATGCCGA-TGTCCCAAACAGGGTCTTACACAA
*
83804849 AATCAAATACGATGCCGATGTCCCAAACATGGTCTTACAC
1 AATCAAATACGATGCCGATGTCCCAAACAGGGTCTTACAC
83804889 GTAAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 25 0.69
43 11 0.31
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (42 bp):
AATCAAATACGATGCCGATGTCCCAAACAGGGTCTTACACAA
Found at i:83804883 original size:42 final size:43
Alignment explanation
Indices: 83804783--83804937 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
83804773 CAATGCCAAC
* * * * *
83804783 GTCCTAGACGTGGTCTTACATG-TAATCAAATATCGATG-TGACT
1 GTCCCAGACATGGTCTTACACGAAAATCAAATA-CGATGCCGA-T
*
83804826 GTCCCAGACAGGGTCTTACAC-AAAATCAAATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAAATCAAATACGATGCCGAT
* * * *
83804868 GTCCCAAACATGGTCTTACACGTAAATCATAAGT-CGATGCCAAC
1 GTCCCAGACATGGTCTTACACGAAAATCA-AA-TACGATGCCGAT
* *
83804912 GTCCCAGACGTTGTCTTACACGAAAA
1 GTCCCAGACATGGTCTTACACGAAAA
83804938 CACATATCGG
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 25 0.27
43 34 0.37
44 32 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAAATCAAATACGATGCCGAT
Found at i:83807710 original size:14 final size:15
Alignment explanation
Indices: 83807686--83807714 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
83807676 TATTCTTCCT
83807686 TTTTATTTTTTCTTC
1 TTTTATTTTTTCTTC
83807701 TTTT-TTTTTTCTTC
1 TTTTATTTTTTCTTC
83807715 ATCAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTTTCTTC
Found at i:83808895 original size:27 final size:26
Alignment explanation
Indices: 83808855--83808966 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 26
83808845 AGGAAGCGTC
*
83808855 CTGGCGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
83808882 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
* *
83808909 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTATGCCAC-ATTATCTG-AT
* * ** *
83808937 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATGCCACATTATCTGAT
83808963 CTGG
1 CTGG
83808967 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:83809948 original size:21 final size:20
Alignment explanation
Indices: 83809923--83809962 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
83809913 ATGGGTTTAC
83809923 AAAAACAAAGATTTTCAAAAA
1 AAAAACAAAG-TTTTCAAAAA
**
83809944 AAAAACTCAGTTTTCAAAA
1 AAAAACAAAGTTTTCAAAA
83809963 TTTAGATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAACAAAGTTTTCAAAAA
Found at i:83815966 original size:27 final size:26
Alignment explanation
Indices: 83815935--83816045 Score: 107
Period size: 27 Copynumber: 4.1 Consensus size: 26
83815925 GGAAGCGTCT
*
83815935 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGATC
83815962 TGGTGGCTCTGCCACATATATCT-ATTC
1 TGGTGGCTCTGCCACAT-TATCTGA-TC
* *
83815989 TGGTGGCTCTCCCATGATTATCTGTATC
1 TGGTGGCTCTGCCA-CATTATCTG-ATC
* * * *
83816017 TAGTGACTCTGTCACATTATCTGTTC
1 TGGTGGCTCTGCCACATTATCTGATC
83816043 TGG
1 TGG
83816046 CAGCTATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
26 7 0.10
27 47 0.68
28 14 0.20
29 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGATC
Found at i:83819627 original size:51 final size:49
Alignment explanation
Indices: 83819447--83819686 Score: 250
Period size: 49 Copynumber: 4.8 Consensus size: 49
83819437 AAGGCTATCT
* * * * *
83819447 GGTACGCATAGTAGCCTGAACTTTGTACTACACATGCGACCAATTATTC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTC
* * * **
83819496 AGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA-TC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC-CAATTATTC
* * * *
83819545 TGATACACGTAGTAGCCTGCACTTAGTACTACGCACGTGATCGAAGTTA-TC
1 -GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTC
* * * *
83819596 GGGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAATTATTC
1 -GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTC
*
83819646 GGTACACCTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
83819687 TCACAATAGA
Statistics
Matches: 156, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
49 74 0.47
50 46 0.29
51 36 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTC
Found at i:83819682 original size:100 final size:101
Alignment explanation
Indices: 83819504--83819684 Score: 258
Period size: 100 Copynumber: 1.8 Consensus size: 101
83819494 TCAGTACACG
* * * *
83819504 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGAACTACACACGCGACTCAACCATCTGATACACCTAGTAGCCTGCACTT
*
83819569 AGTACTACGCACGTGATCGAAGTTATCGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
* ** *
83819605 TAGTAGCCTGCACTTAGAACTACACATGCGAC-CAATTAT-TCGGTACACCTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGAACTACACACGCGACTCAACCATCT-GATACACCTAGTAGCCTGCACT
83819668 TAGTACTACACACGTGA
65 TAGTACTACACACGTGA
83819685 CCTCACAATA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
99 1 0.01
100 40 0.57
101 29 0.41
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGAACTACACACGCGACTCAACCATCTGATACACCTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
Found at i:83835699 original size:49 final size:48
Alignment explanation
Indices: 83835642--83835924 Score: 253
Period size: 49 Copynumber: 5.6 Consensus size: 48
83835632 CTGGTACGCA
* * *
83835642 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAT-CGGTACACG
** *
83835691 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATC-GGTACACG
* * * *
83835741 TAGTAGCCTGCACTTAGTACTACACCCGTGATCGAAGTTATCGG-GCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGTACACG
* ** * * *
83835790 TAGTACTACACATGCGACCAAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTA--GC-C-TGC-ACTTAGTACTACACACGTGA-CCAA-TTATC-GGTACACG
* * * *
83835846 TAGTAGCCTGCGCTTAGTACTACACATGCGACCAATTATTCGGAACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTA-TCGGTACACG
83835895 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
83835925 TCCTCACAAT
Statistics
Matches: 189, Mismatches: 33, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
49 75 0.40
50 48 0.25
51 20 0.11
52 4 0.02
53 4 0.02
54 29 0.15
55 2 0.01
56 7 0.04
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACG
Found at i:83835760 original size:50 final size:49
Alignment explanation
Indices: 83835642--83835771 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
83835632 CTGGTACGCA
* * **
83835642 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAGTACACG
*
83835691 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCAG-TACACG
*
83835741 TAGTAGCCTGCACTTAGTACTACACCCGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
83835772 TCGAAGTTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 33 0.45
50 40 0.55
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAGTACACG
Found at i:83841186 original size:40 final size:41
Alignment explanation
Indices: 83841128--83841440 Score: 422
Period size: 40 Copynumber: 7.7 Consensus size: 41
83841118 TTTGAATTTT
* * * *
83841128 TCCGGGCTAAGTCTCGAAGGCAATTGTGCTAG-TGATTTTA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
* *
83841168 TCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGA-TATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
* *
83841208 TCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-TATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
* *
83841248 TCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TATA
83841290 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TATA
*
83841332 TCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
* *
83841372 TCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTATG
1 TCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTATA
* *
83841412 CCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAATTGTGC
83841441 TTGTGGTAAT
Statistics
Matches: 252, Mismatches: 15, Indels: 12
0.90 0.05 0.04
Matches are distributed among these distances:
39 3 0.01
40 164 0.65
41 6 0.02
42 79 0.31
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
Found at i:83841403 original size:164 final size:162
Alignment explanation
Indices: 83841128--83841440 Score: 473
Period size: 164 Copynumber: 1.9 Consensus size: 162
83841118 TTTGAATTTT
* * * * *
83841128 TCCGGGCTAAGTCTCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCAATT
* * * *
83841193 GTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAA
66 GTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAA
* *
83841258 GACCCGCAGGCATTTGTGCGAGTTGATATATA
131 GACCCGAAGGCAATTGTGCGAGTTGATATATA
*
83841290 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGCAA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGAT-TATATCCGGGCCAAGACCCGAAGGCAA
* * *
83841355 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGCCCGGGTT
64 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCT
83841420 AAGACCCGAAGGCAATTGTGC
129 AAGACCCGAAGGCAATTGTGC
83841441 TTGTGGTAAT
Statistics
Matches: 134, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
162 29 0.22
163 4 0.03
164 101 0.75
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (162 bp):
TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCAATT
GTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAA
GACCCGAAGGCAATTGTGCGAGTTGATATATA
Found at i:83855003 original size:27 final size:27
Alignment explanation
Indices: 83854973--83855150 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83854963 ATATTGAGTC
* * * *
83854973 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
83855000 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83855027 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
83855055 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
83855082 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
83855109 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83855136 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83855151 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:83855112 original size:82 final size:81
Alignment explanation
Indices: 83854994--83855149 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83854984 TGCTATATAA
* *
83854994 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83855059 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
83855076 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83855140 CACTTAGTGC
65 CACTTAGTGC
83855150 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83855651 original size:12 final size:12
Alignment explanation
Indices: 83855634--83855660 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
83855624 ATGGCATACT
83855634 TATGTATATATA
1 TATGTATATATA
83855646 TATGTATATATA
1 TATGTATATATA
83855658 TAT
1 TAT
83855661 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:83874514 original size:17 final size:16
Alignment explanation
Indices: 83874476--83874516 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
83874466 CTATGTGATG
83874476 ATGGGGGAGGAATTCA
1 ATGGGGGAGGAATTCA
*
83874492 ATGGGGGAGGAATTTA
1 ATGGGGGAGGAATTCA
83874508 ATGGGGGAG
1 ATGGGGGAG
83874517 TTCTATCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.29, C:0.02, G:0.49, T:0.20
Consensus pattern (16 bp):
ATGGGGGAGGAATTCA
Found at i:83880020 original size:21 final size:21
Alignment explanation
Indices: 83879996--83880042 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
83879986 TTGAGGGGTG
83879996 TGTCGTAACATCTCTTGGCTA
1 TGTCGTAACATCTCTTGGCTA
*
83880017 TGTCGTGACATCTCTTGGCTA
1 TGTCGTAACATCTCTTGGCTA
83880038 TGTCG
1 TGTCG
83880043 CGACATTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (21 bp):
TGTCGTAACATCTCTTGGCTA
Found at i:83880047 original size:21 final size:21
Alignment explanation
Indices: 83880003--83880048 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
83879993 GTGTGTCGTA
*
83880003 ACATCTCTTGGCTATGTCGTG
1 ACATCTCTTGGCTATGTCGCG
83880024 ACATCTCTTGGCTATGTCGCG
1 ACATCTCTTGGCTATGTCGCG
83880045 ACAT
1 ACAT
83880049 TGAAGGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (21 bp):
ACATCTCTTGGCTATGTCGCG
Found at i:83881346 original size:13 final size:13
Alignment explanation
Indices: 83881328--83881357 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
83881318 AAACTAGATT
83881328 TTAACTAAGAAAA
1 TTAACTAAGAAAA
83881341 TTAACTAAGAAAA
1 TTAACTAAGAAAA
83881354 TTAA
1 TTAA
83881358 AAGGTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:83886136 original size:25 final size:25
Alignment explanation
Indices: 83886108--83886161 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
83886098 GCAGAATGAA
* *
83886108 GCAGCTGCTTGGGC-GGATGCAGCAG
1 GCAGCTGCGTCGGCTGGAT-CAGCAG
*
83886133 GCAGGTGCGTCGGCTGGATCAGCAG
1 GCAGCTGCGTCGGCTGGATCAGCAG
83886158 GCAG
1 GCAG
83886162 GGCAGGTGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.17, C:0.24, G:0.44, T:0.15
Consensus pattern (25 bp):
GCAGCTGCGTCGGCTGGATCAGCAG
Found at i:83889601 original size:48 final size:48
Alignment explanation
Indices: 83889445--83889586 Score: 223
Period size: 48 Copynumber: 3.0 Consensus size: 48
83889435 TGACATTAGG
*
83889445 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGAGATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC
* *
83889493 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGACATGTA-ATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATG-AGATC
* *
83889541 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGA
83889587 CATCGTGTAC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 83 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (48 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC
Found at i:83889609 original size:48 final size:47
Alignment explanation
Indices: 83889445--83889668 Score: 183
Period size: 48 Copynumber: 4.8 Consensus size: 47
83889435 TGACATTAGG
* *
83889445 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGAGATC
1 CCATGTAAGACCAAG-CTGGGACATGGCATTGGCATCGATATGAGATC
* * *
83889493 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGACATGTA-ATC
1 CCATGTAAGACCAAG-CTGGGACATGGCATTGGCATCGATATG-AGATC
* *
83889541 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA-C
1 CCATGTAAGACCA-AGCTGGGACATGGCATTGGCATCGATATGAGATC
* * * * * * *
83889588 ATCGTGTACGACCACAGCTGGG-C-T---ATCGGCTTCGATTTGTGATC
1 -CCATGTAAGACCA-AGCTGGGACATGGCATTGGCATCGATATGAGATC
* * *
83889632 CCATGTAAGATCATATCTGGGATATGGCATTGGCATC
1 CCATGTAAGACCA-AGCTGGGACATGGCATTGGCATC
83889669 TTACTATGTT
Statistics
Matches: 139, Mismatches: 27, Indels: 20
0.75 0.15 0.11
Matches are distributed among these distances:
43 29 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 104 0.75
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (47 bp):
CCATGTAAGACCAAGCTGGGACATGGCATTGGCATCGATATGAGATC
Found at i:83889609 original size:96 final size:91
Alignment explanation
Indices: 83889445--83889668 Score: 254
Period size: 96 Copynumber: 2.4 Consensus size: 91
83889435 TGACATTAGG
* * * *
83889445 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGAGATCCCATGTAAGACCATGTC
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATGTAAGACCAAGTC
*
83889510 TGGGACATGACATTGGCATCGACATGTAATC
66 TGGG-C-T---ATCGGCATCGACATGTAATC
* * *
83889541 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA-CATCGTGTACGACCACAG
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATC-CCATGTAAGACCA-AG
* ** *
83889605 -CTGGGCTATCGGCTTCGATTTGTGATC
64 TCTGGGCTATCGGCATCGACATGTAATC
*
83889632 CCATGTAAGATCATATCTGGGATATGGCATTGGCATC
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATC
83889669 TTACTATGTT
Statistics
Matches: 113, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
91 51 0.45
94 1 0.01
95 2 0.02
96 58 0.51
97 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (91 bp):
CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATGTAAGACCAAGTC
TGGGCTATCGGCATCGACATGTAATC
Found at i:83893927 original size:47 final size:47
Alignment explanation
Indices: 83893814--83894179 Score: 678
Period size: 47 Copynumber: 7.7 Consensus size: 47
83893804 GGCCAATTAG
*
83893814 TACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA
83893863 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
83893910 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
83893957 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
83894004 TACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
83894051 TACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
83894098 TACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
83894145 TACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TACACTTTCACATTCATCACATCGGCCATTAGGCC
83894180 ATACTATCAT
Statistics
Matches: 312, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
47 271 0.87
49 41 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:83894047 original size:22 final size:23
Alignment explanation
Indices: 83894014--83894094 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
83894004 TACACTTTCA
83894014 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
83894037 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
83894061 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
83894084 CATT-ATCACAT
1 CATTCATCACAT
83894095 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:83905817 original size:13 final size:13
Alignment explanation
Indices: 83905799--83905823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83905789 AACTAGATTT
83905799 TAACTAAGAAAAC
1 TAACTAAGAAAAC
83905812 TAACTAAGAAAA
1 TAACTAAGAAAA
83905824 TTAAAAGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.08, T:0.16
Consensus pattern (13 bp):
TAACTAAGAAAAC
Found at i:83925692 original size:29 final size:29
Alignment explanation
Indices: 83925657--83925730 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
83925647 GTTGTGAGAT
* *
83925657 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
83925686 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83925715 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83925731 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83928285 original size:19 final size:20
Alignment explanation
Indices: 83928241--83928287 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
83928231 AAATGACGAA
*
83928241 GTGCCCCTGTTTGTACTTCG
1 GTGCCCCTGTTTGTAATTCG
**
83928261 GTGCCCCTGTTTG-AATTTT
1 GTGCCCCTGTTTGTAATTCG
83928280 GTGCCCCT
1 GTGCCCCT
83928288 AACTGCACGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.06, C:0.30, G:0.23, T:0.40
Consensus pattern (20 bp):
GTGCCCCTGTTTGTAATTCG
Found at i:83930562 original size:48 final size:49
Alignment explanation
Indices: 83930442--83930573 Score: 169
Period size: 49 Copynumber: 2.7 Consensus size: 49
83930432 CTTGTTGTGT
* *
83930442 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCCATAGATGAGA
* * * * * *
83930491 GCCAATGTAAGACTTGTCTGGGACACGGCATCGGC-CTCCTTATATGA-A
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACAC-CCATAGATGAGA
83930539 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGAC
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGAC
83930574 TTTGATGTGC
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 33 0.47
49 37 0.53
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCCATAGATGAGA
Found at i:83930563 original size:141 final size:145
Alignment explanation
Indices: 83930307--83930615 Score: 336
Period size: 141 Copynumber: 2.2 Consensus size: 145
83930297 GATGTGTGCT
* * * *
83930307 AGTGAAAGA-CATGTCTGGGACAT-GCATCGGC-CAC-AT-TATTAGAGCCAATGTAAGACATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCCAATGTAAGACATGT
* * * *
83930367 CTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGGAAAACCTATCTAGGACATGGCGTC-A
65 CTGGGACAGGCATCGGCCTCCAGATATACAAGCTAGTGGAAAACCTATCTAGGACACGGCATCGA
* *
83930431 GC-TTGTTGTG-T-GTC
130 -CTTTGATGTGCTAGCC
*
83930445 AGTGTAAGACC-TGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAATGTAAGACTTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAATGTAAGACATGTC
** * * * * *
83930509 TGGGACACGGCATCGGCCTCCTTATAT-GAAG-TCAGTGTAAGACCTGTCTGGGACACGGCATCG
66 TGGGACA-GGCATCGGCCTCCAGATATACAAGCT-AGTGGAAAACCTATCTAGGACACGGCATCG
83930572 ACTTTGATGTGCTAGCC
129 ACTTTGATGTGCTAGCC
83930589 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
83930616 GTCGGCATCT
Statistics
Matches: 141, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
138 20 0.14
139 9 0.06
140 4 0.03
141 56 0.40
142 23 0.16
143 1 0.01
144 13 0.09
145 15 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (145 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAATGTAAGACATGTC
TGGGACAGGCATCGGCCTCCAGATATACAAGCTAGTGGAAAACCTATCTAGGACACGGCATCGAC
TTTGATGTGCTAGCC
Found at i:83930605 original size:48 final size:46
Alignment explanation
Indices: 83930444--83930611 Score: 167
Period size: 48 Copynumber: 3.5 Consensus size: 46
83930434 TGTTGTGTGT
* ***
83930444 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGAT-G-TGA-AGC
* * * * *
83930493 CAATGTAAGACTTGTCTGGGACACGGCATCGGCCTCCTT-ATATGAAGT
1 CAGTGTAAGACCTGTCTGGGACACGGCATC-GACT--TTGATGTGAAGC
*
83930541 CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGATGTGCTAGC
1 CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGATGTG-AAGC
83930588 CAGTGTAAGACCATGTCTGGGACA
1 CAGTGTAAGACC-TGTCTGGGACA
83930612 TGGCGTCGGC
Statistics
Matches: 98, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.02
46 4 0.04
47 17 0.17
48 41 0.42
49 30 0.31
50 2 0.02
51 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTGATGTGAAGC
Found at i:83934889 original size:13 final size:13
Alignment explanation
Indices: 83934871--83934896 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83934861 TTTTTTTCCA
83934871 AAAACCATTTGTT
1 AAAACCATTTGTT
83934884 AAAACCATTTGTT
1 AAAACCATTTGTT
83934897 TGGGTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
AAAACCATTTGTT
Found at i:83952230 original size:9 final size:9
Alignment explanation
Indices: 83952216--83952241 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
83952206 TAAATATGAA
83952216 CTTTTACAT
1 CTTTTACAT
83952225 CTTTTACAT
1 CTTTTACAT
83952234 CTTTTACA
1 CTTTTACA
83952242 ATTTAGTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (9 bp):
CTTTTACAT
Found at i:83955546 original size:24 final size:24
Alignment explanation
Indices: 83955519--83955565 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
83955509 TATAATTTAT
*
83955519 TCAATCTAATATTTTATTTTCTAA
1 TCAATCTAATATTTTACTTTCTAA
83955543 TCAATCTAATATTTTACTTTCTA
1 TCAATCTAATATTTTACTTTCTA
83955566 TCTTCCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (24 bp):
TCAATCTAATATTTTACTTTCTAA
Found at i:83958161 original size:40 final size:40
Alignment explanation
Indices: 83958109--83958261 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
83958099 GTTAATTATA
83958109 CCTT-ATTGCACATACGTGCCCCTATTTGTACTTCAATAC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATAC
* * * * *
83958148 CCTTGATTACACATATGTGCCCTTGTTTGTACTTCGATAC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATAC
** *
83958188 CCTTGATTGCACATACGTGCCCCGGTTTGTACTTCAGTATC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATA-C
* *
83958229 CC-TGATTGCACATACGTG-TCCTATTTATACTTC
1 CCTTGATTGCACATACGTGCCCCTATTTGTACTTC
83958262 GGTAATTTCA
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.15
40 79 0.81
41 3 0.03
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.37
Consensus pattern (40 bp):
CCTTGATTGCACATACGTGCCCCTATTTGTACTTCAATAC
Found at i:83960988 original size:16 final size:16
Alignment explanation
Indices: 83960964--83960994 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83960954 ATAAGCTAAT
*
83960964 CATATATATATATACA
1 CATAAATATATATACA
83960980 CATAAATATATATAC
1 CATAAATATATATAC
83960995 TATAGTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (16 bp):
CATAAATATATATACA
Found at i:83962390 original size:36 final size:36
Alignment explanation
Indices: 83962343--83962415 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
83962333 ACTATACATA
83962343 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
1 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
83962379 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
1 CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
83962415 C
1 C
83962416 AACTTTTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.19, C:0.37, G:0.05, T:0.38
Consensus pattern (36 bp):
CCCATCAATTCTCAAATGCTTCCCTTTATCTTCGCT
Found at i:83963589 original size:24 final size:24
Alignment explanation
Indices: 83963561--83963606 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
83963551 ATCAATTTGG
*
83963561 GTTTTAAATATT-AATGTGTATTGA
1 GTTTTAAAT-TTCAATGGGTATTGA
83963585 GTTTTAAATTTCAATGGGTATT
1 GTTTTAAATTTCAATGGGTATT
83963607 TGGGTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.50
Consensus pattern (24 bp):
GTTTTAAATTTCAATGGGTATTGA
Found at i:83963614 original size:24 final size:24
Alignment explanation
Indices: 83963555--83963616 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
83963545 TAAATTATCA
*
83963555 ATTTGGGTTTTAAATATTAATGTGT
1 ATTTGGG-TTTAAATATTAATGGGT
*
83963580 A-TTGAGTTTTAAAT-TTCAATGGGT
1 ATTTG-GGTTTAAATATT-AATGGGT
83963604 ATTTGGGTTTAAA
1 ATTTGGGTTTAAA
83963617 GTTTAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
23 2 0.06
24 24 0.77
25 5 0.16
ACGTcount: A:0.29, C:0.02, G:0.21, T:0.48
Consensus pattern (24 bp):
ATTTGGGTTTAAATATTAATGGGT
Found at i:83971750 original size:14 final size:14
Alignment explanation
Indices: 83971705--83971752 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
83971695 AAATTTTTTA
83971705 TTTTCCCCTAAAAT
1 TTTTCCCCTAAAAT
***
83971719 TTTTACTCCCTCTCAT
1 TTTT-C-CCCTAAAAT
83971735 TTTTCCCCTAAAAT
1 TTTTCCCCTAAAAT
83971749 TTTT
1 TTTT
83971753 ACTTCCTTCC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 14 0.54
15 2 0.08
16 10 0.38
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTTCCCCTAAAAT
Found at i:83971791 original size:22 final size:21
Alignment explanation
Indices: 83971766--83971808 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
83971756 TCCTTCCCAT
83971766 CCCA-CCCTCCATCTACCCCAAA
1 CCCATCCC-CCATC-ACCCCAAA
*
83971788 CCCATCCCCCATCCCCCCAAA
1 CCCATCCCCCATCACCCCAAA
83971809 TTTTTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 7 0.37
22 9 0.47
23 3 0.16
ACGTcount: A:0.26, C:0.63, G:0.00, T:0.12
Consensus pattern (21 bp):
CCCATCCCCCATCACCCCAAA
Found at i:83976937 original size:46 final size:48
Alignment explanation
Indices: 83976865--83976967 Score: 131
Period size: 48 Copynumber: 2.2 Consensus size: 48
83976855 GACAGGACAG
* *
83976865 GACA-GAAGTGAGCCATGCAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAA-TGAGCCATGCAAGCCCATATTACAGATATATGGCATTGGA
* * *
83976911 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGCAAGCCCATATTACAGATATATGGCATTGGA
83976959 GACAGGAAT
1 GACAGGAAT
83976968 AATTCGTGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 21 0.43
47 4 0.08
48 24 0.49
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (48 bp):
GACAGGAATGAGCCATGCAAGCCCATATTACAGATATATGGCATTGGA
Found at i:83980281 original size:15 final size:14
Alignment explanation
Indices: 83980260--83980295 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
83980250 ATTTTTTATT
*
83980260 TATTATATTTTAAA
1 TATTATATATTAAA
83980274 TATATATATATTAAA
1 TAT-TATATATTAAA
83980289 TATTATA
1 TATTATA
83980296 AAAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATTATATATTAAA
Found at i:83980752 original size:204 final size:204
Alignment explanation
Indices: 83980402--83980807 Score: 776
Period size: 204 Copynumber: 2.0 Consensus size: 204
83980392 GCCAAAGCTT
*
83980402 AGAAAACGGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
1 AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
83980467 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
66 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
83980532 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
131 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
83980597 GAGAGAGAG
196 GAGAGAGAG
*
83980606 AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATGGTCACCTCTA
1 AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
*
83980671 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTATAATCCCTT
66 GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
*
83980736 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATATAGAGAGAGA
131 TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
83980801 GAGAGAG
196 GAGAGAG
83980808 GAGGGAGGGA
Statistics
Matches: 198, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
204 198 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (204 bp):
AGAAAACAGGCCTAAAATTTTGTTTGGGCCTAAGTCAAACTCAACTCGGTCCATAGTCACCTCTA
GTTCATTACAATAAACTTTCTATCTTTTCTTTTACTCTTCACATTTTATGTCGTTAGAATCCCTT
TTCGATTTATGTATTAAAATAATAAGAGTCTAATCTCCCCATATATATATATATAGAGAGAGAGA
GAGAGAGAG
Found at i:83981090 original size:4 final size:4
Alignment explanation
Indices: 83980807--83981151 Score: 218
Period size: 4 Copynumber: 84.0 Consensus size: 4
83980797 GAGAGAGAGA
* * *
83980807 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGA- GGAG AGAG AGAG AGAG
1 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG
* * * * * * * *
83980854 AGAG AGAG GG-G AGAG GGAG AGAG AGAG GGAG AGAGAG AGAG AGAG AGAG
1 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG -G-GAG GGAG GGAG GGAG
* * * *
83980903 AGAG GGAG GGAG AGAG AGA- GG-G GGAG GGAG GGAAG AAGAG GGAG GGAG
1 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GG-AG -GGAG GGAG GGAG
* ** * *
83980951 GGAG GAAGAG GGAG GGAG GGAG AGAG CTAG AGAG AGAG GGAG GGAG AGAGAG
1 GGAG G--GAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG -G-GAG
* ** *
83981003 GGAG AGAGAG GGAG GGAG GGAG GGAG AGAG CTAG AGAG GGAG GGAG GGAG
1 GGAG -G-GAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG
* * * *
83981053 GGAG GGAG GGAG GGAG AGAG AGAG AGAG AG-G GGAG GGAGG GGAG GGA-
1 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGA-G GGAG GGAG
* * *
83981100 GG-G GGAGG GGAGG TGGAGG GGAG GAAAG GGAG GGAG GGAG AGAT GGAG
1 GGAG GGA-G GGA-G -GGA-G GGAG G-GAG GGAG GGAG GGAG GGAG GGAG
83981148 GGAG
1 GGAG
83981152 AGAGAGAGAG
Statistics
Matches: 288, Mismatches: 32, Indels: 42
0.80 0.09 0.12
Matches are distributed among these distances:
3 14 0.05
4 230 0.80
5 25 0.09
6 19 0.07
ACGTcount: A:0.34, C:0.01, G:0.64, T:0.01
Consensus pattern (4 bp):
GGAG
Found at i:83981095 original size:5 final size:5
Alignment explanation
Indices: 83981080--83981123 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
83981070 GAGAGAGAGA
83981080 GAGGG GA-GG GAGGG GA-GG GAGGGG GAGGG GAGGTG GAGGG GAGG
1 GAGGG GAGGG GAGGG GAGGG GA-GGG GAGGG GAGG-G GAGGG GAGG
83981124 AAAGGGAGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 8 0.23
5 18 0.51
6 9 0.26
ACGTcount: A:0.20, C:0.00, G:0.77, T:0.02
Consensus pattern (5 bp):
GAGGG
Found at i:83981120 original size:11 final size:10
Alignment explanation
Indices: 83981080--83981123 Score: 56
Period size: 11 Copynumber: 4.4 Consensus size: 10
83981070 GAGAGAGAGA
83981080 GAGGGGA-GG
1 GAGGGGAGGG
83981089 GAGGGGA-GG
1 GAGGGGAGGG
83981098 GAGGGGGAGGG
1 GA-GGGGAGGG
83981109 GAGGTGGAGGG
1 GAGG-GGAGGG
83981120 GAGG
1 GAGG
83981124 AAAGGGAGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 11 0.34
10 7 0.22
11 14 0.44
ACGTcount: A:0.20, C:0.00, G:0.77, T:0.02
Consensus pattern (10 bp):
GAGGGGAGGG
Found at i:83982242 original size:13 final size:13
Alignment explanation
Indices: 83982224--83982248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83982214 GTAAAGCAGT
83982224 TAAAAATCCAAAG
1 TAAAAATCCAAAG
83982237 TAAAAATCCAAA
1 TAAAAATCCAAA
83982249 ACAGTCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
TAAAAATCCAAAG
Found at i:83991972 original size:12 final size:12
Alignment explanation
Indices: 83991955--83991986 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
83991945 GACATGGCCT
83991955 ACCACACGAGTG
1 ACCACACGAGTG
*
83991967 ACCACATGAGTG
1 ACCACACGAGTG
83991979 ACCACACG
1 ACCACACG
83991987 CCCGTGTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.34, G:0.22, T:0.09
Consensus pattern (12 bp):
ACCACACGAGTG
Found at i:84003247 original size:45 final size:45
Alignment explanation
Indices: 84003187--84003357 Score: 227
Period size: 45 Copynumber: 3.7 Consensus size: 45
84003177 TATGAGAGCT
** *
84003187 AGTGTAAGATGATGTCTGGGACATGGCATCGGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
*
84003232 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
* *
84003277 AGTGTAAGACCATATCTGGGACATGGCATCGACTTTA-ATGTGTGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGT---C
* *
84003324 GAGTGTAAGACCATGTCCGGGACATGGCGTCGAC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGAC
84003358 ACCTTACCTT
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
44 6 0.05
45 75 0.67
47 1 0.01
48 30 0.27
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
Found at i:84009179 original size:30 final size:30
Alignment explanation
Indices: 84009121--84009179 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
84009111 TTTACGAGCC
**
84009121 TAGGGGCAAAATCATAATTTTGTGAAAGTT
1 TAGGGGCAAAATCATAATTTTGCCAAAGTT
** *
84009151 TAGGGGCAAAATGGTTATTTTGCCAAAGT
1 TAGGGGCAAAATCATAATTTTGCCAAAGT
84009180 ATGAATTGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATCATAATTTTGCCAAAGTT
Found at i:84021271 original size:18 final size:17
Alignment explanation
Indices: 84021248--84021294 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
84021238 TTATTTTTCT
84021248 TTTATTAAGTTTTTAAGA
1 TTTATT-AGTTTTTAAGA
*
84021266 TTTATTCGTTTTTAAGA
1 TTTATTAGTTTTTAAGA
* *
84021283 TTCATTTGTTTT
1 TTTATTAGTTTT
84021295 CCTTTTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 20 0.77
18 6 0.23
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.62
Consensus pattern (17 bp):
TTTATTAGTTTTTAAGA
Found at i:84021277 original size:16 final size:17
Alignment explanation
Indices: 84021256--84021294 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
84021246 CTTTTATTAA
*
84021256 GTTTTTAAGATTTATTC
1 GTTTTTAAGATTCATTC
*
84021273 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTC
84021290 GTTTT
1 GTTTT
84021295 CCTTTTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.62
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:84028684 original size:27 final size:27
Alignment explanation
Indices: 84028653--84028707 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
84028643 TAGAATACTT
84028653 TGGTTTACAAAATTACCAAAATACCCC
1 TGGTTTACAAAATTACCAAAATACCCC
** *
84028680 TGGTTTGTAAAATTATCAAAATACCCC
1 TGGTTTACAAAATTACCAAAATACCCC
84028707 T
1 T
84028708 ATAGGGTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
TGGTTTACAAAATTACCAAAATACCCC
Found at i:84028728 original size:27 final size:27
Alignment explanation
Indices: 84028663--84028885 Score: 232
Period size: 27 Copynumber: 8.3 Consensus size: 27
84028653 TGGTTTACAA
* ** *
84028663 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * *
84028690 AATTATCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84028717 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
84028744 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
84028771 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
84028798 AAATACCTAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
84028825 AATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
84028852 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
84028879 AATTACC
1 AATTACC
84028886 ATTTTACCCC
Statistics
Matches: 164, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 163 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:84028798 original size:81 final size:81
Alignment explanation
Indices: 84028663--84028881 Score: 271
Period size: 81 Copynumber: 2.7 Consensus size: 81
84028653 TGGTTTACAA
* ** * * * * *
84028663 AATTACCAAAATACCCCTGGT-TTGTAAAATTATCAAAATACCCCTATAGGGTAGAAATACCGAA
1 AATTACTAAAATACCCCT-GTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
84028727 ATACCCCTATAGGGTAG
65 ATACCCCTATAGGGTAG
* *
84028744 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCTAAA
1 AATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
84028809 TACCCCTGTAGGGTAG
66 TACCCCTATAGGGTAG
* * * * *
84028825 AATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATAACCTTGTGGGGTA-AAAT
1 AATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
84028882 TACCATTTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
80 6 0.05
81 115 0.95
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTATAGGGTAG
Found at i:84030451 original size:64 final size:64
Alignment explanation
Indices: 84030371--84030554 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
84030361 AGACATTATG
* ** *
84030371 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTATACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTATACCATGTAGACAAGAGAGCTACCAGATAA
* * * * * *
84030435 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACCAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTATACCATGTAGACAAGAGAGCTACCAGAT
84030500 AA
63 AA
* *
84030502 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGT-TCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTAT-ACCATGTAG-ACAAGAGAGC
84030555 CGAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 21 0.22
67 29 0.30
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTATACCATGTAGACAAGAGAGCTACCAGATAA
Found at i:84033506 original size:45 final size:44
Alignment explanation
Indices: 84033420--84033546 Score: 184
Period size: 45 Copynumber: 2.9 Consensus size: 44
84033410 ATTTATTCAT
* * *
84033420 CGGCATT-TTGCCTGCTAGGCTCGAGGCCCGAAAAATATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATCTCAC
*
84033463 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATGTCTCAC
1 CGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATCTCAC
*
84033508 CAGCATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 CGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
84033547 CTGTACAACA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 7 0.09
44 14 0.19
45 53 0.71
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (44 bp):
CGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATCTCAC
Found at i:84044111 original size:39 final size:40
Alignment explanation
Indices: 84043907--84044129 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
84043897 TTGAATGCTG
* * * * * *
84043907 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
84043947 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
84043987 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
84044027 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
84044067 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
84044106 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
84044130 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:84044149 original size:79 final size:80
Alignment explanation
Indices: 84043982--84044164 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
84043972 GTGCGAGATA
* * *
84043982 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
84044047 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
84044062 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
84044126 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
84044141 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
84044165 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:84047080 original size:27 final size:27
Alignment explanation
Indices: 84047050--84047227 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84047040 ATATTGAGTC
* * * *
84047050 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
84047077 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
84047104 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
84047132 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
84047159 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
84047186 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
84047213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84047228 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:84047189 original size:82 final size:81
Alignment explanation
Indices: 84047071--84047226 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
84047061 TGCTATATAA
* *
84047071 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
84047136 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
84047153 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
84047217 CACTTAGTGC
65 CACTTAGTGC
84047227 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84054953 original size:27 final size:27
Alignment explanation
Indices: 84054922--84055098 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
84054912 TATATTGAGC
* * *
84054922 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
84054949 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
84054976 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
84055004 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
84055031 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
84055058 CGCACACTTAGTGCAACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
84055084 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84055099 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 15 0.12
27 90 0.70
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:84055014 original size:55 final size:54
Alignment explanation
Indices: 84054922--84055098 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 54
84054912 TATATTGAGC
* * * * *
84054922 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
84054976 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
84055031 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTC-AAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
84055084 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84055099 GTACAATTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 16 0.15
54 43 0.41
55 45 0.43
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:84055061 original size:82 final size:80
Alignment explanation
Indices: 84054943--84055097 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 80
84054933 TGCTATATAA
* *
84054943 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-AA-TCGCA
84055008 CACTTAGTGCCGCATGG
64 CACTTAGTGCCGCATGG
* * **
84055025 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCAC
84055089 ACTTAGTGC
65 ACTTAGTGC
84055098 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 15 0.23
81 3 0.05
82 48 0.73
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAATCGCACA
CTTAGTGCCGCATGG
Found at i:84055662 original size:13 final size:13
Alignment explanation
Indices: 84055644--84055668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84055634 TACTAAATTT
84055644 TCATGGATTCAAG
1 TCATGGATTCAAG
84055657 TCATGGATTCAA
1 TCATGGATTCAA
84055669 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:84062791 original size:27 final size:27
Alignment explanation
Indices: 84062761--84062938 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84062751 ATATTGAGTC
* * * *
84062761 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
84062788 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
84062815 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
84062843 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
84062870 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
84062897 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
84062924 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84062939 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:84062900 original size:82 final size:81
Alignment explanation
Indices: 84062782--84062937 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
84062772 TGCTATATAA
* *
84062782 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
84062847 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
84062864 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
84062928 CACTTAGTGC
65 CACTTAGTGC
84062938 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84081913 original size:27 final size:27
Alignment explanation
Indices: 84081882--84082059 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84081872 TAAATTGTAC
84081882 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
84081909 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84081935 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
84081963 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
84081991 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84082018 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
84082045 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84082060 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:84081996 original size:82 final size:81
Alignment explanation
Indices: 84081883--84082038 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
84081873 AAATTGTACA
* *
84081883 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
84081947 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84081964 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
84082029 TGCGAGTTGA
65 TGCGAATTGA
84082039 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84082050 original size:82 final size:81
Alignment explanation
Indices: 84081879--84082059 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
84081869 GATTAAATTG
* *
84081879 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84081944 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84081960 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84082024 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84082042 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84082060 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84095986 original size:39 final size:39
Alignment explanation
Indices: 84095820--84095979 Score: 257
Period size: 39 Copynumber: 4.1 Consensus size: 39
84095810 ATGCAAGACA
*
84095820 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* **
84095859 CTAGAAATGTATCCGGGCTAAAGTCCTACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
84095898 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
84095937 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
84095976 CTGG
1 CTGG
84095980 TAATATAATT
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:84100571 original size:23 final size:22
Alignment explanation
Indices: 84100545--84100590 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
84100535 ATAAATAGTA
84100545 ATAGTGTTAGAAATATACTATAT
1 ATAGTGTTAGAAATATA-TATAT
* *
84100568 ATAGTGTTTGAAGTATATATAT
1 ATAGTGTTAGAAATATATATAT
84100590 A
1 A
84100591 AAATAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.41
Consensus pattern (22 bp):
ATAGTGTTAGAAATATATATAT
Found at i:84100596 original size:25 final size:23
Alignment explanation
Indices: 84100544--84100598 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
84100534 TATAAATAGT
84100544 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
84100567 TATAGTGTTTGAAGTATATA-TATAA
1 AATAGTGTTAGAA--ATATACTAT-A
84100592 AATAGTG
1 AATAGTG
84100599 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 12 0.46
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.38
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:84100719 original size:22 final size:22
Alignment explanation
Indices: 84100687--84100728 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
84100677 TATAGTGTAA
84100687 AAAATACATACATAACATAATT
1 AAAATACATACATAACATAATT
* *
84100709 AAAATATATACATAAGATAA
1 AAAATACATACATAACATAA
84100729 CATGTAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAATACATACATAACATAATT
Found at i:84100731 original size:27 final size:26
Alignment explanation
Indices: 84100690--84100781 Score: 76
Period size: 28 Copynumber: 3.3 Consensus size: 26
84100680 AGTGTAAAAA
*
84100690 ATACATACATAACATAATTAAAATAT
1 ATACATAAATAACATAATTAAAATAT
* **
84100716 ATACATAAGATAACATGTAGAAAAATAT
1 ATACATAA-ATAACAT-AATTAAAATAT
* * *
84100744 ATATATCAATAATATAGTATTAAAGATAT
1 ATACATAAATAACATA--ATTAAA-ATAT
84100773 ATACATAAA
1 ATACATAAA
84100782 ATAGTATAAT
Statistics
Matches: 49, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
26 7 0.14
27 13 0.27
28 18 0.37
29 11 0.22
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (26 bp):
ATACATAAATAACATAATTAAAATAT
Found at i:84100780 original size:25 final size:24
Alignment explanation
Indices: 84100742--84100873 Score: 96
Period size: 23 Copynumber: 5.6 Consensus size: 24
84100732 GTAGAAAAAT
84100742 ATATATATCAATAATATAGTATTAAAG
1 ATATATA-C-ATAATATAGTATT-AAG
* *
84100769 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* *
84100792 ATATATACGTAATATAGAATTTAA-
1 ATATATACATAATATAGTA-TTAAG
* * *
84100816 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* *
84100838 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAGTATTAAG
*
84100861 AAATATA-ATAATA
1 ATATATACATAATA
84100874 ACAAAAAAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
21 2 0.02
22 15 0.17
23 42 0.48
24 7 0.08
25 13 0.15
26 1 0.01
27 7 0.08
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:84100871 original size:23 final size:25
Alignment explanation
Indices: 84100828--84100873 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84100818 TATACCTAAT
84100828 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
84100853 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
84100874 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:84101191 original size:16 final size:16
Alignment explanation
Indices: 84101153--84101191 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
84101143 ATCTCCAAAA
*
84101153 AAAAACTAGCCTATCC
1 AAAAACTAGCCTATAC
*
84101169 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTATAC
*
84101185 AATAACT
1 AAAAACT
84101192 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTATAC
Done.