Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 262 of 318
Found at i:84101377 original size:18 final size:18
Alignment explanation
Indices: 84101354--84101407 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
84101344 ACAAGTGGTG
84101354 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
84101372 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
84101384 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
84101402 GTGGAG
1 GTGGAG
84101408 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:84101386 original size:30 final size:30
Alignment explanation
Indices: 84101350--84101417 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
84101340 AGGTACAAGT
84101350 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
84101380 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
84101410 GGTGGTGG
1 GGTGGTGG
84101418 CAAAGGCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.16, C:0.06, G:0.53, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:84106910 original size:44 final size:43
Alignment explanation
Indices: 84106775--84107236 Score: 291
Period size: 44 Copynumber: 10.4 Consensus size: 43
84106765 TGTTCCTCTA
* * *
84106775 CAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* * * * ** *
84106820 TAACTTCAGGGAGATAAGACTTGTTA-CTTCAACCCGCTTTATTG
1 CAACTTCAGGGAGATAAGA-TCG-TAGCTTCAATCTGCTCCACTG
** * *
84106864 CAACTTCAAAGAGATAAGGATCGTGGCTTCAATTTGCTCCACTG
1 CAACTTCAGGGAGATAA-GATCGTAGCTTCAATCTGCTCCACTG
* * *
84106908 CAAATTCGGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* * * * **
84106953 TAACTTCAGGGAGATAAGACTTGTTA-CTTCAACCCGCTCTGCTG
1 CAACTTCAGGGAGATAAGA-TCG-TAGCTTCAATCTGCTCCACTG
* * * *
84106997 CAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTG
1 CAACTTCAGGGAGATAA-GATCGTAGCTTCAATCTGCTCCACTG
* * * *
84107041 AAACTTCAAGGAGATAAGATCTGCTATCTTCAATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* * * * * * *
84107086 CAACTTTAGGGAGATAAGACTTGTTA-CTTTAACCCGTTCTACTG
1 CAACTTCAGGGAGATAAGA-TCG-TAGCTTCAATCTGCTCCACTG
* * * * * * *
84107130 CAACTTTAGAGAGATAAGGATCATGGTTTCGATCTGATCCACTG
1 CAACTTCAGGGAGATAA-GATCGTAGCTTCAATCTGCTCCACTG
* * * *
84107174 CAACTTCAGGGAGATAAGATCTGCCATCTTCAGTCTGCTTCACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* *
84107219 CAACTTCAGAGAAATAAG
1 CAACTTCAGGGAGATAAG
84107237 GTTTGCTATG
Statistics
Matches: 314, Mismatches: 88, Indels: 30
0.73 0.20 0.07
Matches are distributed among these distances:
43 15 0.05
44 168 0.54
45 128 0.41
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGATCGTAGCTTCAATCTGCTCCACTG
Found at i:84106958 original size:89 final size:89
Alignment explanation
Indices: 84106808--84107237 Score: 329
Period size: 89 Copynumber: 4.9 Consensus size: 89
84106798 CTATCTTTAG
* * * * ** *
84106808 TCTGCTCCACTGTAACTTCAGGGAGATAAGA-CTTGTTA-CTTCAACCCGCTTTATTGCAACTTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAATCTGCTCCACTGCAACTTC
*
84106871 AAAGAGATAAGGATCGTGGCTTCAA
65 AGAGAGATAAGGATCGTGGCTTCAA
* * * *
84106896 TTTGCTCCACTGCAAATTCGGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGTAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCA
* * **
84106961 GGGAGATAA-GACTTGTTACTTCAA
66 GAGAGATAAGGA-TCGTGGCTTCAA
* * ** * ** * * *
84106985 CCCGCTCTGCTGCAACTTCAGAGAGATAAGGATC-G-TGGCTTCGATATGCTCCACTGAAACTTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTATCTTCAATCTGCTCCACTGCAACTTC
**
84107048 A-AGGAGATAA-GATCTGCTATCTTCAA
65 AGA-GAGATAAGGATC-G-TGGCTTCAA
* * * * * * * * *
84107074 TCTGCTCTACTGCAACTTTAGGGAGATAAGA-CTTGTTA-CTTTAACCCGTTCTACTGCAACTTT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAATCTGCTCCACTGCAACTTC
* * *
84107137 AGAGAGATAAGGATCATGGTTTCGA
65 AGAGAGATAAGGATCGTGGCTTCAA
* * * *
84107162 TCTGATCCACTGCAACTTCAGGGAGATAAGATCTGCCATCTTCAGTCTGCTTCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCA
*
84107227 GAGAAATAAGG
66 GAGAGATAAGG
84107238 TTTGCTATGA
Statistics
Matches: 261, Mismatches: 67, Indels: 27
0.74 0.19 0.08
Matches are distributed among these distances:
87 2 0.01
88 105 0.40
89 144 0.55
90 10 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (89 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCA
GAGAGATAAGGATCGTGGCTTCAA
Found at i:84107021 original size:133 final size:133
Alignment explanation
Indices: 84106779--84107236 Score: 657
Period size: 133 Copynumber: 3.4 Consensus size: 133
84106769 CCTCTACAAC
* * *
84106779 TTCAGGGAGATAAGATCTGCTATCTTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGT
1 TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
* * * * *
84106844 TACTTCAACCCGCTTTATTGCAACTTCAAAGAGATAAGGATCGTGGCTTCAATTTGCTCCACTGC
66 TACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTGC
84106909 AAA
131 AAA
* *
84106912 TTCGGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGT
1 TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
*
84106977 TACTTCAACCCGCTCTGCTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTG-
66 TACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTGC
84107041 AAA
131 AAA
* * *
84107044 CTTCAAGGAGATAAGATCTGCTATCTTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGACTTG
1 -TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * * * * *
84107109 TTACTTTAACCCGTTCTACTGCAACTTTAGAGAGATAAGGATCATGGTTTCGATCTGATCCACTG
65 TTACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTG
*
84107174 CAAC
130 CAAA
* * * * *
84107178 TTCAGGGAGATAAGATCTGCCATCTTCAGTCTGCTTCACTGCAACTTCAGAGAAATAAG
1 TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
84107237 GTTTGCTATG
Statistics
Matches: 292, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
132 3 0.01
133 287 0.98
134 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (133 bp):
TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
TACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTGC
AAA
Found at i:84115787 original size:14 final size:15
Alignment explanation
Indices: 84115763--84115791 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
84115753 CATATGATGT
84115763 CATGTAATGCAAATG
1 CATGTAATGCAAATG
84115778 CATG-AATGCAAATG
1 CATGTAATGCAAATG
84115792 AGGCATCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (15 bp):
CATGTAATGCAAATG
Found at i:84124719 original size:48 final size:48
Alignment explanation
Indices: 84124646--84124837 Score: 226
Period size: 48 Copynumber: 4.0 Consensus size: 48
84124636 ATGTCATTAG
* *
84124646 GAGTTACATTGATTTGGCTTTGGGCCATGATATTAGCACTTCGGGTGT
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
* *
84124694 GAGTTACATTGATTTGGCTTCGGGCCATGATATTACCACTTCGGGTAC
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
* * *
84124742 GAGTTACATTGATTTGGC-TCTGGGCCATTATATTAGCACTTTGAGTGC
1 GAGTTACATTGATTTGGCTTC-GGGCCATGATATTAGCACTTCGGGTGC
* * ** ** *
84124790 GAGACT-CATTAAAATGGCTTCGGGCCATGATATGGGCACTTAGGGTGC
1 GAG-TTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
84124838 AAGACTTTTG
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
47 2 0.02
48 118 0.96
49 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (48 bp):
GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
Found at i:84124810 original size:96 final size:96
Alignment explanation
Indices: 84124646--84124822 Score: 257
Period size: 96 Copynumber: 1.8 Consensus size: 96
84124636 ATGTCATTAG
* * * * * **
84124646 GAGTTACATTGATTTGGCTTTGGGCCATGATATTAGCACTTCGGGTGTGAGTTACATTGATTTGG
1 GAGTTACATTGATTTGGCTCTGGGCCATGATATTAGCACTTCGAGTGCGAGCTACATTAAAATGG
84124711 CTTCGGGCCATGATATTACCACTTCGGGTAC
66 CTTCGGGCCATGATATTACCACTTCGGGTAC
* *
84124742 GAGTTACATTGATTTGGCTCTGGGCCATTATATTAGCACTTTGAGTGCGAGACT-CATTAAAATG
1 GAGTTACATTGATTTGGCTCTGGGCCATGATATTAGCACTTCGAGTGCGAG-CTACATTAAAATG
84124806 GCTTCGGGCCATGATAT
65 GCTTCGGGCCATGATAT
84124823 GGGCACTTAG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 70 0.99
97 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (96 bp):
GAGTTACATTGATTTGGCTCTGGGCCATGATATTAGCACTTCGAGTGCGAGCTACATTAAAATGG
CTTCGGGCCATGATATTACCACTTCGGGTAC
Found at i:84127289 original size:46 final size:48
Alignment explanation
Indices: 84127186--84127454 Score: 195
Period size: 45 Copynumber: 5.7 Consensus size: 48
84127176 AGAGCCTGAG
* * * * *
84127186 AGCCAGTGTAAGACCATATCTGGGACATGGCATCTGCATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* *
84127233 GAGCTA-TGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
*
84127279 AGCCAGTGTAAGA-CATG-CTGGGACAT-GCATCGG-CTACAAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA
* * * ** *
84127323 -GTCTGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAGAGGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-TCGAGATGTA
* ** * * *
84127371 -GTCAGTGTAAGACCATGTCTACGACATGGCATCGACAC-GGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-A
*
84127419 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
84127455 ACTTGATGGA
Statistics
Matches: 179, Mismatches: 29, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
43 10 0.06
44 6 0.03
45 47 0.26
46 35 0.20
47 7 0.04
48 43 0.24
49 1 0.01
50 30 0.17
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:84127436 original size:50 final size:48
Alignment explanation
Indices: 84127282--84127456 Score: 166
Period size: 48 Copynumber: 3.7 Consensus size: 48
84127272 AGATGTAAGC
* * *
84127282 CAGTGTAAGA-CATG-CTGGGACAT-GCATCGGCTAC--A-AGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ACGGATAGAGGAGT
* * * * *
84127325 CTGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATAGAGGAGT
** *
84127373 CAGTGTAAGACCATGTCTACGACATGGCATCGACACGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATA-GAG-GAGT
84127422 CTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGAC
84127457 TTGATGGATG
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
43 9 0.08
44 4 0.04
45 10 0.09
46 8 0.07
47 1 0.01
48 42 0.38
49 3 0.03
50 33 0.30
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATAGAGGAGT
Found at i:84130249 original size:22 final size:23
Alignment explanation
Indices: 84130207--84130254 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
84130197 ATCAATATTA
84130207 TTATTACTATTACTAACATTT-T
1 TTATTACTATTACTAACATTTAT
* *
84130229 TTATTA-TTTTACGTAATATTTAT
1 TTATTACTATTAC-TAACATTTAT
84130252 TTA
1 TTA
84130255 CAACTAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTACTATTACTAACATTTAT
Found at i:84132250 original size:19 final size:19
Alignment explanation
Indices: 84132228--84132273 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
84132218 ATTCCTTTCT
*
84132228 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-CA
*
84132247 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATCA
84132266 TTTGCATT
1 TTTGCATT
84132274 AGACTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:84136896 original size:64 final size:64
Alignment explanation
Indices: 84136790--84136917 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
84136780 CATATAATAA
*
84136790 CACATCTAGTTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * * *
84136854 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATCGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
84136918 AGATACATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:84137109 original size:87 final size:86
Alignment explanation
Indices: 84136955--84137476 Score: 491
Period size: 87 Copynumber: 6.0 Consensus size: 86
84136945 ATGTTCCTCA
* *
84136955 GAGGTTGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
1 GAGGATGATGAGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
84137020 CTAAGCAGTAGGGAAACAGATC
65 CTAAGCAGTAGGGAAACAGATC
* * * * * * * *
84137042 GGGGTTGATGAGCTTTAAGCCTCTAAGCAGTAGGGTAACAAGCTGAATTTACAAATCTTATCTCC
1 GAGGATGATGAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
* **
84137107 CTAAGTAGTAGTGG-AGTAGATC
65 CTAAGCAGTAG-GGAAACAGATC
* * * * *
84137129 GAAGACTG-TGAACCTTAACCTCCTAAGCAGTAGGGTAACAGGCCG-ATTTACAGATCTTATCTC
1 GAGGA-TGATGAGCCTTAACC-CCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCC
**
84137192 CCTAAGCAGTAGTGG-AGTAGATC
64 CCTAAGCAGTAG-GGAAACAGATC
* * * * * *
84137215 GAAGACGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAGCAGGCTGAATTTCCAGAT-TTAACCCC
1 GAGGATGATGAGCCTTAACCC-CTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
* * *
84137279 CTAAGTAGTAAGGAAACAGATT
65 CTAAGCAGTAGGGAAACAGATC
* * * * ** *
84137301 GAAGATGAAG-GACCTTAACCCCTTAAACAGTAGGGTAACAGGTTGAATTCCCAAATCTTAACCC
1 GAGGATGATGAG-CCTTAACCCC-TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCC
84137365 CCTAAGCAGTAGGGAAACAGATC
64 CCTAAGCAGTAGGGAAACAGATC
* ** * * *
84137388 AAAGG-TGACAAGCCTTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGACAGTTCTTAAC
1 -GAGGATGATGAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAAC
*
84137452 CCCCTAAGTAGTAGGGAAACAGATC
62 CCCCTAAGCAGTAGGGAAACAGATC
84137477 AAAAGCAATG
Statistics
Matches: 361, Mismatches: 58, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
85 6 0.02
86 142 0.39
87 165 0.46
88 12 0.03
89 36 0.10
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (86 bp):
GAGGATGATGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATC
Found at i:84137321 original size:44 final size:43
Alignment explanation
Indices: 84137271--84137645 Score: 206
Period size: 43 Copynumber: 8.6 Consensus size: 43
84137261 ATTTCCAGAT
* *
84137271 TTAACCCCCTAAGTAGTAAGGAAACAGATTGAAGATGAAGGACC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGAAGG-CC
* * * * * * **
84137315 TTAACCCCTTAAACAGTAGGGTAACAGGTTGAA-TTCCCAA-ATC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGAT--GAAGGCC
** * *
84137358 TTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGACAAGCC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-AGGCC
* * ** **
84137402 TTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGACAGTTC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGA-TGA-AGGCC
* * * **
84137447 TTAACCCCCTAAGTAGTAGGGAAACAGA-TCAA-AAGCAATGGTT
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATG-AA-GGCC
* * * *
84137490 TTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGGT-AAGGGCC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGAA-GGCC
* * ** * **
84137533 TTAAACCCCTAAGCAGTAGGGTAACAGGCT-AA-ATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGA-TGA-AGGCC
* * ** *
84137576 TTAACACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-AGGCC
* *
84137620 TTAAACCCCTAAGCAGTAGGGTAACA
1 TTAACCCCCTAAGCAGTAGGGAAACA
84137646 AGCTGAATTT
Statistics
Matches: 244, Mismatches: 72, Indels: 30
0.71 0.21 0.09
Matches are distributed among these distances:
42 6 0.02
43 115 0.47
44 91 0.37
45 32 0.13
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (43 bp):
TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGAAGGCC
Found at i:84137370 original size:173 final size:172
Alignment explanation
Indices: 84136967--84137476 Score: 557
Period size: 173 Copynumber: 2.9 Consensus size: 172
84136957 GGTTGATGGG
84136967 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 CCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
** * * * * *
84137032 GAAACAGATCGGGGTTGATGAGCTTTAAGCCTCTAAGCAGTAGGGTAACAAGCTGAATTTACAAA
65 GAAACAGATCGAAG-AGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * * ** *
84137097 TCTTATCTCCCTAAGTAGT-AGTGGAGTAGATCGAAGACTGTGAA
129 TCTTAACCCCCTAAGTAGTAAG-GAAACAGATCGAAGACTGAGAA
* * *
84137141 CCTTAACCTCCTAAGCAGTAGGGTAACAGGCCG-ATTTACAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAACC-CCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG-
** * *
84137205 GG-AGTAGATCGAAGACGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAGCAGGCTGAATTTCCAG
64 GGAAACAGATCGAAGA-GGTGAGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAATTTACAG
* *
84137269 AT-TTAACCCCCTAAGTAGTAAGGAAACAGATTGAAGA-TGAAGGA
128 ATCTTAACCCCCTAAGTAGTAAGGAAACAGATCGAAGACTG-AGAA
* * ** *
84137313 CCTTAACCCCTTAAACAGTAGGGTAACAGGTTGAATTCCCAAATCTTAACCCCCTAAGCAGTAGG
1 CCTTAACCCC-TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
* * * *
84137378 GAAACAGATC-AA-AGGTGACAAGCCTTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGA
65 GAAACAGATCGAAGAGGTG---AGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTG-A-ATTTA
* *
84137441 CAGTTCTTAACCCCCTAAGTAGTAGGGAAACAGATC
125 CAGATCTTAACCCCCTAAGTAGTAAGGAAACAGATC
84137477 AAAAGCAATG
Statistics
Matches: 281, Mismatches: 41, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
170 4 0.01
171 5 0.02
172 59 0.21
173 148 0.53
174 30 0.11
175 7 0.02
176 28 0.10
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (172 bp):
CCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
AAACAGATCGAAGAGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
TTAACCCCCTAAGTAGTAAGGAAACAGATCGAAGACTGAGAA
Found at i:84137579 original size:218 final size:217
Alignment explanation
Indices: 84137270--84137692 Score: 589
Period size: 218 Copynumber: 1.9 Consensus size: 217
84137260 AATTTCCAGA
* * *
84137270 TTTAACCCCCTAAGTAGTAAGGAAACAGATTGAAGATGAAGGACCTTAACCCCTTAAACAGTAGG
1 TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGATGAAGGACCTTAACCCCTTAAACAGTAGG
* * * * *
84137335 GTAACAGGTTGAATTCCCAAATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGACAAG
66 GTAACAGGCTAAATTCACAAATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGGCGACAAG
* * * * *
84137400 CCTTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGACAGTTCTTAACCCCCTAAGTAGTA
131 CCTTAAACCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTGACAGATCTTAACACCCTAAGTAGTA
84137465 GGGAAACAGATCAAAAGCAATGGT
194 GGGAAACAGATCAAAAGCAATGGT
* * *
84137489 TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGGT-AAGGGCCTTAAACCCC-TAAGCAGTAG
1 TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGATGAAGGACCTT-AACCCCTTAAACAGTAG
* * * ***
84137552 GGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
65 GGTAACAGGCTAAATTCACAAATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGGCGACAA
* *
84137617 GCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATCTTATCACCCTAAGTAGTAG
130 GCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTGACAGATCTTAACACCCTAAGTAGTAG
84137682 GGAAACAGATC
195 GGAAACAGATC
84137693 GAAGTTATGA
Statistics
Matches: 179, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
216 37 0.21
217 1 0.01
218 102 0.57
219 39 0.22
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (217 bp):
TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGATGAAGGACCTTAACCCCTTAAACAGTAGG
GTAACAGGCTAAATTCACAAATCTTAACACCCTAAGCAGTAGGGAAACAGATCAAAGGCGACAAG
CCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTGACAGATCTTAACACCCTAAGTAGTAGG
GAAACAGATCAAAAGCAATGGT
Found at i:84137645 original size:87 final size:86
Alignment explanation
Indices: 84137496--84137696 Score: 330
Period size: 87 Copynumber: 2.3 Consensus size: 86
84137486 GGTTTTAAAC
* * *
84137496 CCCTAAGCAGTAAGGAAACAGATCGAAGGTAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAAG
84137561 CTAAATTTACAGATCTTAACA
66 CTAAATTTACAGATCTTAACA
*
84137582 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAA
1 CCCTAAGCAGTAGGGAAACAGATCGAAGG-GAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAA
* *
84137647 GCTGAATTTACAGATCTTATCA
65 GCTAAATTTACAGATCTTAACA
*
84137669 CCCTAAGTAGTAGGGAAACAGATCGAAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAG
84137697 TTATGAATCC
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
86 28 0.26
87 79 0.74
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGGGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAAG
CTAAATTTACAGATCTTAACA
Found at i:84139894 original size:18 final size:18
Alignment explanation
Indices: 84139871--84139905 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
84139861 TATTTTAATG
84139871 CCATTATTATTATTATTT
1 CCATTATTATTATTATTT
*
84139889 CCATTATTGTTATTATT
1 CCATTATTATTATTATT
84139906 ATATATATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.60
Consensus pattern (18 bp):
CCATTATTATTATTATTT
Found at i:84140235 original size:22 final size:23
Alignment explanation
Indices: 84140193--84140240 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
84140183 ATCAATATTA
84140193 TTATTACTATTACTAACATTT-T
1 TTATTACTATTACTAACATTTAT
* *
84140215 TTATTA-TTTTACGTAATATTTAT
1 TTATTACTATTAC-TAACATTTAT
84140238 TTA
1 TTA
84140241 CAACTAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTACTATTACTAACATTTAT
Found at i:84142056 original size:34 final size:36
Alignment explanation
Indices: 84142006--84142072 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
84141996 ATTAAAAATA
* *
84142006 TATTTTTATAATTTTTAATAAATTTAA-TATTTTTT
1 TATTTTTATAATTTTTAAAAAAATTAATTATTTTTT
*
84142041 TATTTTT-TTATTTTTAAAAAAATTAATTATTT
1 TATTTTTATAATTTTTAAAAAAATTAATTATTT
84142073 GTTGATTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (36 bp):
TATTTTTATAATTTTTAAAAAAATTAATTATTTTTT
Found at i:84146005 original size:26 final size:26
Alignment explanation
Indices: 84145976--84146025 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
84145966 AGAAAATAAA
84145976 ATAAAATAATTTA-AAAATAAAAATAT
1 ATAAAAT-ATTTAGAAAATAAAAATAT
* *
84146002 ATAAAATTTTTAGAAATTAAAAAT
1 ATAAAATATTTAGAAAATAAAAAT
84146026 TGCCATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (26 bp):
ATAAAATATTTAGAAAATAAAAATAT
Found at i:84150492 original size:6 final size:6
Alignment explanation
Indices: 84150426--84150488 Score: 117
Period size: 6 Copynumber: 10.5 Consensus size: 6
84150416 ATGCTATTAG
84150426 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
*
84150474 ATACAT ATATAT ATA
1 ATACAT ATACAT ATA
84150489 TATAAAAGCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (6 bp):
ATACAT
Found at i:84166903 original size:46 final size:45
Alignment explanation
Indices: 84166744--84166897 Score: 168
Period size: 46 Copynumber: 3.3 Consensus size: 45
84166734 CTCGGACTCA
*
84166744 ACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGCTCGA-CATTCGCATCCATAAGTGAACTCGG
* * * ***
84166790 ACTCAACTAAACGAGCTCGA-ATGC-CTAGTTACATCTCTCGAACTCGG
1 ACTCAACTCAACGAGCTCGACATTCGC-A--TCCATAAGT-GAACTCGG
*
84166837 ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGCTC-GACATTCGCATCCATAAGTGAACTCGG
84166883 ACTCAACTCAACGAG
1 ACTCAACTCAACGAG
84166898 TTCGGATGCC
Statistics
Matches: 87, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 47 0.54
47 29 0.33
48 2 0.02
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
ACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGG
Found at i:84171177 original size:102 final size:102
Alignment explanation
Indices: 84171001--84171298 Score: 479
Period size: 102 Copynumber: 2.9 Consensus size: 102
84170991 CATCCCTAAT
*
84171001 TATATTAACGCGGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
1 TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
84171066 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
66 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
* * *
84171103 TATATTAACGCAGGTGTAGAGAATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
1 TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
84171168 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
66 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
* * * * * ** *
84171205 TATATTAACGCTGGAGCAGAGGATGGTGGCCATGGCAACACGACGGATCCTGAAGTAGACAAAGG
1 TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
*
84171270 TGAAGGAGCTCATGTCATCGGAATCGAGC
66 TGAAGGAGCTCATCTCATCGGAATCGAGC
84171299 CTTTTCACCT
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 180 1.00
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (102 bp):
TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
Found at i:84177729 original size:21 final size:20
Alignment explanation
Indices: 84177692--84177739 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
84177682 TAGCCTAGGT
**
84177692 GTGTGGCTTCACACATGGTC
1 GTGTGGCTTCACACATGCCC
*
84177712 GTGTGGCTTCCCCACATGCCC
1 GTGTGGCTT-CACACATGCCC
84177733 GTGTGGC
1 GTGTGGC
84177740 CAGACTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.10, C:0.31, G:0.31, T:0.27
Consensus pattern (20 bp):
GTGTGGCTTCACACATGCCC
Found at i:84179928 original size:19 final size:19
Alignment explanation
Indices: 84179904--84179944 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
84179894 TTTCTGACTC
84179904 CCTTGTCAGAAATTATTGT
1 CCTTGTCAGAAATTATTGT
*
84179923 CCTTGTCAGAAATTGTTGT
1 CCTTGTCAGAAATTATTGT
84179942 CCT
1 CCT
84179945 AAAACCACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (19 bp):
CCTTGTCAGAAATTATTGT
Found at i:84185541 original size:17 final size:17
Alignment explanation
Indices: 84185519--84185553 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
84185509 CAAGAAAAGA
84185519 AAGACAAATACATAAGC
1 AAGACAAATACATAAGC
84185536 AAGACAAATACATAAGC
1 AAGACAAATACATAAGC
84185553 A
1 A
84185554 TATAATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.60, C:0.17, G:0.11, T:0.11
Consensus pattern (17 bp):
AAGACAAATACATAAGC
Found at i:84186567 original size:40 final size:40
Alignment explanation
Indices: 84186512--84186590 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
84186502 CAAAACCAAA
*
84186512 CTAGCCAATTTTTCTATGTTTTCAATTAAGCCTAAATTTC
1 CTAGCCAATTTTTCTATGTTTTCAATCAAGCCTAAATTTC
*
84186552 CTAGCCAATTTTTCTATGTTTTCAATCAAGGCTAAATTT
1 CTAGCCAATTTTTCTATGTTTTCAATCAAGCCTAAATTT
84186591 TCTATCATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (40 bp):
CTAGCCAATTTTTCTATGTTTTCAATCAAGCCTAAATTTC
Found at i:84188537 original size:28 final size:28
Alignment explanation
Indices: 84188505--84188558 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
84188495 CCCCAATGAC
**
84188505 TACCCCACAATGATCGAATTCCAACGGT
1 TACCCCACAACAATCGAATTCCAACGGT
*
84188533 TACCCCACAACAATTGAATTCCAACG
1 TACCCCACAACAATCGAATTCCAACG
84188559 ACTACTCACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.11, T:0.20
Consensus pattern (28 bp):
TACCCCACAACAATCGAATTCCAACGGT
Found at i:84194039 original size:40 final size:40
Alignment explanation
Indices: 84193959--84194046 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
84193949 AAATTGTATG
* * * *
84193959 TAATATAATAAAATATTTATTATATTTATTTGTGTTTTTT
1 TAATATAATAAAACATTTATTATATTTATTGGTATGTTTT
84193999 TAATATAATAAAACATTTATTATATTTA-TGGTAATGTTTT
1 TAATATAATAAAACATTTATTATATTTATTGGT-ATGTTTT
84194039 TAATATAA
1 TAATATAA
84194047 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.07
40 40 0.93
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (40 bp):
TAATATAATAAAACATTTATTATATTTATTGGTATGTTTT
Found at i:84196156 original size:16 final size:16
Alignment explanation
Indices: 84196131--84196161 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84196121 AACAAATTTA
84196131 AAAAAAATTAAAAAAT
1 AAAAAAATTAAAAAAT
*
84196147 AAAAATATTAAAAAA
1 AAAAAAATTAAAAAA
84196162 ATATAAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAAATTAAAAAAT
Found at i:84196177 original size:17 final size:18
Alignment explanation
Indices: 84196145--84196240 Score: 90
Period size: 19 Copynumber: 5.2 Consensus size: 18
84196135 AAATTAAAAA
* *
84196145 ATAAAAATATTAAAAAAAT
1 ATAAAATTA-TAAAAAATT
*
84196164 ATAAACTTATAAAAAAGTT
1 ATAAAATTATAAAAAA-TT
*
84196183 A-AAAACTTAT-AAATATT
1 ATAAAA-TTATAAAAAATT
84196200 ATAAAATTATAAAAAATCT
1 ATAAAATTATAAAAAAT-T
84196219 A-ATAAATTATAAAAAATT
1 ATA-AAATTATAAAAAATT
84196237 ATAA
1 ATAA
84196241 GTTTATTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
17 7 0.11
18 27 0.42
19 30 0.47
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (18 bp):
ATAAAATTATAAAAAATT
Found at i:84196195 original size:10 final size:9
Alignment explanation
Indices: 84196133--84196240 Score: 68
Period size: 9 Copynumber: 12.2 Consensus size: 9
84196123 CAAATTTAAA
84196133 AAAAATTA-
1 AAAAATTAT
84196141 AAAAA-TA-
1 AAAAATTAT
84196148 AAAATATTA-
1 AAAA-ATTAT
*
84196157 AAAAAATAT
1 AAAAATTAT
*
84196166 -AAACTTAT
1 AAAAATTAT
84196174 AAAAAAGTTA-
1 -AAAAA-TTAT
*
84196184 AAAACTTAT
1 AAAAATTAT
*
84196193 AAATATTAT
1 AAAAATTAT
84196202 -AAAATTAT
1 AAAAATTAT
* *
84196210 AAAAAATCT
1 AAAAATTAT
84196219 AATAAATTAT
1 AA-AAATTAT
84196229 AAAAAATTAT
1 -AAAAATTAT
84196239 AA
1 AA
84196241 GTTTATTAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.08
8 25 0.32
9 27 0.35
10 15 0.19
11 5 0.06
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:84196203 original size:36 final size:37
Alignment explanation
Indices: 84196155--84196240 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 37
84196145 ATAAAAATAT
* *
84196155 TAAAAAAATATAAACTTATAAAAAAGT-TAA-AAACTTA
1 TAAAAAATTATAAAATTATAAAAAA-TCTAATAAA-TTA
*
84196192 T-AAATATTATAAAATTATAAAAAATCTAATAAATTA
1 TAAAAAATTATAAAATTATAAAAAATCTAATAAATTA
84196228 TAAAAAATTATAA
1 TAAAAAATTATAA
84196241 GTTTATTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
35 1 0.02
36 27 0.64
37 14 0.33
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (37 bp):
TAAAAAATTATAAAATTATAAAAAATCTAATAAATTA
Found at i:84199292 original size:29 final size:29
Alignment explanation
Indices: 84199243--84199313 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
84199233 ATGAGATCTA
* * * *
84199243 TGGAGCTCTGGCGGTATATCCGTAATTAC
1 TGGAGTTCTGGCAGTAAATCCGCAATTAC
84199272 TGGAGTTCTGGCAGTAAATCCGCAATTAC
1 TGGAGTTCTGGCAGTAAATCCGCAATTAC
*
84199301 TGGAATTCTGGCA
1 TGGAGTTCTGGCA
84199314 ATTTGTTCGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (29 bp):
TGGAGTTCTGGCAGTAAATCCGCAATTAC
Found at i:84199338 original size:24 final size:24
Alignment explanation
Indices: 84199305--84199356 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
84199295 AATTACTGGA
* * *
84199305 ATTCTGGCAATTTGTTCGCATTTT
1 ATTCTAGCAAATTGTTCGCATATT
*
84199329 ATTCTAGCAAATTGTTTGCATATT
1 ATTCTAGCAAATTGTTCGCATATT
84199353 ATTC
1 ATTC
84199357 CGGTGGTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.48
Consensus pattern (24 bp):
ATTCTAGCAAATTGTTCGCATATT
Found at i:84200462 original size:19 final size:20
Alignment explanation
Indices: 84200427--84200464 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
84200417 TTTTTTTTTT
84200427 AAGTTTTTCAAACAAAAATG
1 AAGTTTTTCAAACAAAAATG
84200447 AAGTTTTTCAAA-AAAAAT
1 AAGTTTTTCAAACAAAAAT
84200465 TGGTTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.32
Consensus pattern (20 bp):
AAGTTTTTCAAACAAAAATG
Found at i:84208807 original size:21 final size:21
Alignment explanation
Indices: 84208783--84208833 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
84208773 AATTGCACAC
84208783 GGCCGTGTGGGTCAATGGCCA
1 GGCCGTGTGGGTCAATGGCCA
84208804 GGCCGTGTGGGTCAATGGCCA
1 GGCCGTGTGGGTCAATGGCCA
*
84208825 GGCCATGTG
1 GGCCGTGTG
84208834 AATCGTGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.24, G:0.43, T:0.20
Consensus pattern (21 bp):
GGCCGTGTGGGTCAATGGCCA
Found at i:84210315 original size:27 final size:27
Alignment explanation
Indices: 84210285--84210337 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
84210275 TTTCATTCTT
*
84210285 TCCATACAAATAATTATTTTAGATTCC
1 TCCATACAAATAATTATTTCAGATTCC
* * *
84210312 TCCATGCGAGTAATTATTTCAGATTC
1 TCCATACAAATAATTATTTCAGATTC
84210338 TTTCGAATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (27 bp):
TCCATACAAATAATTATTTCAGATTCC
Found at i:84212700 original size:39 final size:39
Alignment explanation
Indices: 84212644--84212822 Score: 268
Period size: 39 Copynumber: 4.6 Consensus size: 39
84212634 ATCGTGATCT
* *
84212644 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
84212683 GAAGCCTGAAGGTTAACTGAAGCACTCAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
**
84212722 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
84212761 GAAGCCCGAAAGCTAATTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
84212800 GAAGCCCGAAGGCTAATTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
84212823 TCATCAGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.39, C:0.22, G:0.25, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:84216616 original size:14 final size:14
Alignment explanation
Indices: 84216597--84216639 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
84216587 CTATATATAG
84216597 AAAAAATGAAAAGA
1 AAAAAATGAAAAGA
*
84216611 AAAAAATGAAAATA
1 AAAAAATGAAAAGA
* *
84216625 AAAAGATAAAAAGA
1 AAAAAATGAAAAGA
84216639 A
1 A
84216640 GGTGAAAACC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (14 bp):
AAAAAATGAAAAGA
Found at i:84218013 original size:44 final size:45
Alignment explanation
Indices: 84217965--84218056 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 45
84217955 AGACACTAGC
* *
84217965 CTTAT-TTCCATAAGGTAGCAAGGGAGCATGCTAAAGATTGTAG-T
1 CTTATCTTCC-TAAGGAAGCAAGGGAGCAGGCTAAAGATTGTAGAT
* *
84218009 CTTATCTTCCTGAGGAAGCAAGGGAGCAGGCTAGAGATTGTAGAT
1 CTTATCTTCCTAAGGAAGCAAGGGAGCAGGCTAAAGATTGTAGAT
84218054 CTT
1 CTT
84218057 GTCTCCCCGA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
44 34 0.81
45 8 0.19
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (45 bp):
CTTATCTTCCTAAGGAAGCAAGGGAGCAGGCTAAAGATTGTAGAT
Found at i:84218192 original size:44 final size:44
Alignment explanation
Indices: 84218144--84218228 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
84218134 CCGCTAACCT
*
84218144 TATC-TCTCTGAGGTAGCAAAGGAGCAGGCTGAAGATTGTAGTCG
1 TATCTTCT-TGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGTCG
*
84218188 TATCTTCTTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG
1 TATCTTCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAG
84218229 ATTTTGTCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 35 0.92
45 3 0.08
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (44 bp):
TATCTTCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGTCG
Found at i:84218227 original size:177 final size:176
Alignment explanation
Indices: 84217918--84218418 Score: 637
Period size: 177 Copynumber: 2.8 Consensus size: 176
84217908 GAAAGTAGAG
* * *
84217918 AATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAGACACTAGCCTTATTTC-CATAAGGTA
1 AATCTTATCTT-CCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCTC-TAAGGTA
* * * *
84217982 GCAAGGGAGCATGCTAAAGATTGTAGTCTTATCTTCCTGAGGAAGCAAGGGAGCAGGCTAGAGAT
64 GCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTA-AGAT
* * *
84218047 TGTAGATCTTGTCTCCCCGAGATAGTAGTGGGGCAAATTAAAAATG-GAA
128 TGTAGATCTTGTCTCCCCGAGACAGCAGTGGGGCAAATCAAAAATGAG-A
* * * * * *
84218096 AATCTTATTTTTCGAGGTAGTAGGGGAGCAGATTTTAGCCGCTAACCTTATCTCTCTGAGGTAGC
1 AATCTTATCTTCCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGTAGC
* * *
84218161 AAAGGAGCAGGCTGAAGATTGTAGTCGTATCTTCTTGAGGTAGCAAGGGAGCAGACTGAAGATTG
66 AAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACT-AAGATTG
* * * *
84218226 TAGATTTTGTCTCCTCGAGACAGCAGTGGGGCAGATCGAAAATGAGA
130 TAGATCTTGTCTCCCCGAGACAGCAGTGGGGCAAATCAAAAATGAGA
* * * *
84218273 ATTCTTATCTTCCTAAGGTAGCAGGAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAG
1 AATCTTATCTTCC-GAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGTAG
* * * *
84218338 CAAGGGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAACAAGGGAACAGACTAAATATT
65 CAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACT-AAGATT
*
84218403 GTAGATCTTATCTCCC
129 GTAGATCTTGTCTCCC
84218419 TAAGCAGTAG
Statistics
Matches: 275, Mismatches: 44, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
177 148 0.54
178 127 0.46
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (176 bp):
AATCTTATCTTCCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGTAGC
AAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAGATTGT
AGATCTTGTCTCCCCGAGACAGCAGTGGGGCAAATCAAAAATGAGA
Found at i:84218368 original size:44 final size:44
Alignment explanation
Indices: 84218320--84218416 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
84218310 AGCCACCAGC
* **
84218320 CTTATCTCTCTAAGGTAGCAAGGGAGCAGGTTGAAGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * * *
84218364 CTTATCT-TCCTGAGGTAACAAGGGAACAGACTAAATATTGTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
84218409 CTTATCTC
1 CTTATCTC
84218417 CCTAAGCAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
43 1 0.02
44 34 0.79
45 8 0.19
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
Found at i:84219270 original size:12 final size:13
Alignment explanation
Indices: 84219239--84219280 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
84219229 ACCAAATAAC
84219239 TACAACACAGCAAA
1 TACAACACAG-AAA
84219253 TAACAACA-AGAAA
1 T-ACAACACAGAAA
*
84219266 TACAACAGAGAAA
1 TACAACACAGAAA
84219279 TA
1 TA
84219281 ACAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.23
13 11 0.42
14 3 0.12
15 6 0.23
ACGTcount: A:0.62, C:0.19, G:0.10, T:0.10
Consensus pattern (13 bp):
TACAACACAGAAA
Found at i:84220495 original size:16 final size:16
Alignment explanation
Indices: 84220476--84220524 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
84220466 TTTATGTACA
84220476 TATTTTCTTTTAAATC
1 TATTTTCTTTTAAATC
* *
84220492 TATTTAT-GTTT--ATA
1 TATTT-TCTTTTAAATC
84220506 TATTTTCTTTTAAATC
1 TATTTTCTTTTAAATC
84220522 TAT
1 TAT
84220525 ATATATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
16 13 0.52
17 1 0.04
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (16 bp):
TATTTTCTTTTAAATC
Found at i:84220498 original size:28 final size:29
Alignment explanation
Indices: 84220466--84220524 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
84220456 TTCGTATTAT
84220466 TTTATG-TACATATTTTCTTTTAAATCTA
1 TTTATGTTACATATTTTCTTTTAAATCTA
*
84220494 TTTATGTTTATATATTTTCTTTTAAATCTA
1 TTTATG-TTACATATTTTCTTTTAAATCTA
84220524 T
1 T
84220525 ATATATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 6 0.21
30 22 0.79
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTATGTTACATATTTTCTTTTAAATCTA
Found at i:84222876 original size:25 final size:25
Alignment explanation
Indices: 84222848--84222897 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
84222838 ATCCATTTTC
84222848 ATTTTTTAAT-ATTTAATTATTTTAT
1 ATTTTTTAATAATTT-ATTATTTTAT
* *
84222873 ATTTTTTGATAATTTTTTATTTTAT
1 ATTTTTTAATAATTTATTATTTTAT
84222898 TTTATAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (25 bp):
ATTTTTTAATAATTTATTATTTTAT
Found at i:84222892 original size:20 final size:20
Alignment explanation
Indices: 84222861--84222919 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
84222851 TTTTAATATT
84222861 TAATTATTTTATATTTTTTGA
1 TAATT-TTTTATATTTTTTGA
*
84222882 TAATTTTTTAT-TTTATTTTA
1 TAATTTTTTATATTT-TTTGA
* *
84222902 TAGTTTTTTAAATTTTTT
1 TAATTTTTTATATTTTTT
84222920 ATGGGAAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 3 0.09
20 22 0.67
21 8 0.24
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.71
Consensus pattern (20 bp):
TAATTTTTTATATTTTTTGA
Found at i:84222898 original size:30 final size:29
Alignment explanation
Indices: 84222864--84222921 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
84222854 TAATATTTAA
84222864 TTATTTTATA-TTTTTTGATAATTTTTTATT
1 TTATTTTATAGTTTTTT-A-AATTTTTTATT
84222894 TTATTTTATAGTTTTTTAAATTTTTTAT
1 TTATTTTATAGTTTTTTAAATTTTTTAT
84222922 GGGAAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 10 0.37
30 11 0.41
31 6 0.22
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.72
Consensus pattern (29 bp):
TTATTTTATAGTTTTTTAAATTTTTTATT
Found at i:84222910 original size:10 final size:10
Alignment explanation
Indices: 84222861--84222921 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
84222851 TTTTAATATT
84222861 TAATTATTTTA
1 TAATT-TTTTA
84222872 T-ATTTTTTGA
1 TAATTTTTT-A
84222882 TAATTTTTTA
1 TAATTTTTTA
*
84222892 T-TTTATTTTA
1 TAATT-TTTTA
*
84222902 TAGTTTTTTA
1 TAATTTTTTA
84222912 -AATTTTTTA
1 TAATTTTTTA
84222921 T
1 T
84222922 GGGAAACATA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
9 14 0.33
10 18 0.43
11 10 0.24
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.70
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:84224245 original size:125 final size:126
Alignment explanation
Indices: 84224094--84224446 Score: 322
Period size: 130 Copynumber: 2.7 Consensus size: 126
84224084 TCCAACGAGA
* *
84224094 AAATCGAAACCCAGCA-TAGTAGGGCACGATTCCTCGAATTTCTAAACATCGAGCATTGCCTTAT
1 AAATCGCAACCCAGCACGA-TAGGGCACGATTCC-CGAATTTC-AAACATCGAGCATTGCCTTAT
* * * * *
84224158 TTT-AGA-ATTTAGAGAGT-ATGAATGAAATTCTAAAGAAATC-TTCGATTA-TTGAACGAACGG
63 TTTAAGATATTTAGA-AGTCATGAACGAAATTCCAAAGAAA-CATTCGATTACTTGAACAAAAGA
84224218 G
126 G
* * * *
84224219 AAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAAGATCGAGTATTACCTTCATT
1 AAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATT-TCAAACATCGAGCATTGCCTT-ATT
* * ** *
84224284 TTAAAGATTTTTTGAAGTCATGAACGAAATTCCAAAGGGACATTCGATTACTTTGAGCAAAAGAG
64 TT-AAGATATTTAGAAGTCATGAACGAAATTCCAAAGAAACATTCGATTAC-TTGAACAAAAGAG
* * * * * *
84224349 AAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGCCTTCTT
1 AAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATT-TCAAACATCGAGCATTGCCTT-AT
* *
84224414 TTTAAAGGATTTTTAGAAGACATGAACGAAATT
63 TTT-AA-GATATTTAGAAGTCATGAACGAAATT
84224447 TTGAAGGGAT
Statistics
Matches: 189, Mismatches: 27, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
124 22 0.12
125 35 0.19
126 1 0.01
127 7 0.04
128 30 0.16
130 40 0.21
131 30 0.16
132 24 0.13
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (126 bp):
AAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTTCAAACATCGAGCATTGCCTTATTTT
AAGATATTTAGAAGTCATGAACGAAATTCCAAAGAAACATTCGATTACTTGAACAAAAGAG
Found at i:84224472 original size:132 final size:132
Alignment explanation
Indices: 84224218--84224560 Score: 422
Period size: 132 Copynumber: 2.6 Consensus size: 132
84224208 GAACGAACGG
* * * ** **
84224218 GAAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAAGATCGAGTATTACCTTCA
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCA
* * *
84224282 TTTTAAA-GATTTTTTGAAGTCATGAACGAAATTCCAAAGGGACATTCGATTACTTTGAGCAAAA
66 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTCCAAAGGGACATTCGATCACTTTGAGCAAAA
84224346 GA
131 GA
* *
84224348 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGCCTTCT
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCA
*** * * * **
84224413 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTTGATCATTTTGAGCAAGC
66 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTCCAAAGGGACATTCGATCACTTTGAGCAAAA
84224478 GA
131 GA
* * * *
84224480 GAAATTGCAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATCAAATC-TCGTCTTC
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAA-CATCGCCTTC
* *
84224544 GTTTTAAAGAATTTTTA
65 ATTTTAAAGGATTTTTA
84224561 AATGAATAAT
Statistics
Matches: 183, Mismatches: 27, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
130 32 0.17
131 30 0.16
132 120 0.66
133 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (132 bp):
GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCA
TTTTAAAGGATTTTTAGAAGACATGAACGAAATTCCAAAGGGACATTCGATCACTTTGAGCAAAA
GA
Found at i:84226786 original size:17 final size:18
Alignment explanation
Indices: 84226759--84226793 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
84226749 TATTATTTGG
*
84226759 TTTGTTTGTTTTTTGTTT
1 TTTGTTTGTTTTGTGTTT
84226777 TTTG-TTGTTTTGTGTTT
1 TTTGTTTGTTTTGTGTTT
84226794 GTATGGGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (18 bp):
TTTGTTTGTTTTGTGTTT
Found at i:84227307 original size:133 final size:131
Alignment explanation
Indices: 84227083--84227504 Score: 598
Period size: 133 Copynumber: 3.2 Consensus size: 131
84227073 TCTGTTCTAT
* * * * * *
84227083 TGCAGCTTCAAGGAGATAAGATCTGTAATTTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGG
1 TGCAACTTCAGGGAGACAAGATCTATAATATTCAGCCTACTCCACTACAACTTTA-GGAGCTAGG
* **
84227148 ATAGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCATCGTCTTTGATTTGCTA
65 AT-GTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTTGATTTGCCC
84227213 CAC
129 CAC
* *
84227216 TGCAACTTCAGGGAGACAAGATCTATAATCTTCAACCTACTCCACTACAACTTTAGGAAGCTAGG
1 TGCAACTTCAGGGAGACAAGATCTATAATATTCAGCCTACTCCACTACAACTTTAGG-AGCTAGG
* *
84227281 ATGGTGGCTTAAATCTACTTCGCTGCATCTTCAGGAAGCCAAGATTTGTCGT-TTTCGATTTGCC
65 AT-GTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTT-GATTTGCC
84227345 CCAC
128 CCAC
* *
84227349 TGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACTCCACTACAACTTTAGTGAGGTAGG
1 TGCAACTTCAGGGAGACAAGATCTATAATATTCAGCCTACTCCACTACAACTTTAG-GAGCTAGG
* * *
84227414 ACT-T-GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCC
65 A-TGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTTGATTTGCCC
84227477 CAC
129 CAC
84227480 TGCAACTTCAGGGAGACAAGATCTA
1 TGCAACTTCAGGGAGACAAGATCTA
84227505 CATTTTGTTT
Statistics
Matches: 262, Mismatches: 22, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
131 79 0.30
132 8 0.03
133 173 0.66
134 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (131 bp):
TGCAACTTCAGGGAGACAAGATCTATAATATTCAGCCTACTCCACTACAACTTTAGGAGCTAGGA
TGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTTGATTTGCCCCA
C
Found at i:84228756 original size:6 final size:6
Alignment explanation
Indices: 84228747--84228802 Score: 64
Period size: 6 Copynumber: 9.7 Consensus size: 6
84228737 TGGCCTCTCC
* *
84228747 TTTTC- TTTT-T TTTTCT TTTTCT TTTTCT TTTTAT TTTTCT TCTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
84228793 TCTTT-T TTTT
1 T-TTTCT TTTT
84228803 GGAAGGTCTC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
5 11 0.25
6 31 0.70
7 2 0.05
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:84228771 original size:21 final size:20
Alignment explanation
Indices: 84228746--84228802 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 20
84228736 TTGGCCTCTC
*
84228746 CTTTTCTTTTTTTTTCTTTTT
1 CTTTTCTTTTTTTTT-TTCTT
*
84228767 CTTTTTCTTTTTATTTTTCTT
1 C-TTTTCTTTTTTTTTTTCTT
84228788 CTTCTTCTTTTTTTT
1 CTT-TTCTTTTTTTT
84228803 GGAAGGTCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 2 0.06
21 16 0.52
22 13 0.42
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (20 bp):
CTTTTCTTTTTTTTTTTCTT
Found at i:84231296 original size:19 final size:19
Alignment explanation
Indices: 84231272--84231336 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
84231262 GGGGAAATTT
84231272 AATGCAAATGATGCAATGC
1 AATGCAAATGATGCAATGC
* *
84231291 AATGCAAAGGATGCCATGC
1 AATGCAAATGATGCAATGC
84231310 AATGCAAATGCATG-AGATG-
1 AATGCAAATG-ATGCA-ATGC
84231329 AATGCAAA
1 AATGCAAA
84231337 GGAAAGAAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 34 0.85
20 6 0.15
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (19 bp):
AATGCAAATGATGCAATGC
Found at i:84241630 original size:21 final size:20
Alignment explanation
Indices: 84241605--84241652 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
84241595 ATTTTGTATC
84241605 TTATTT-TTTACTCATCTATTA
1 TTATTTATTT-CT-ATCTATTA
*
84241626 TTATTATATTTCTATTTATTA
1 TTATT-TATTTCTATCTATTA
84241647 TTATTT
1 TTATTT
84241653 GTTATTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 17 0.71
22 3 0.12
23 3 0.12
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTATTTCTATCTATTA
Found at i:84241924 original size:25 final size:26
Alignment explanation
Indices: 84241873--84241924 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
84241863 TTCTATTTTC
*
84241873 ATATTTTTATGTATATCTATACACAT
1 ATATTTTTATGTATATATATACACAT
84241899 ATATATTTTATG-A-ATATATACACAT
1 ATAT-TTTTATGTATATATATACACAT
84241924 A
1 A
84241925 CTTATGTGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 5 0.21
27 7 0.29
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (26 bp):
ATATTTTTATGTATATATATACACAT
Found at i:84254244 original size:46 final size:45
Alignment explanation
Indices: 84254177--84254650 Score: 287
Period size: 46 Copynumber: 10.8 Consensus size: 45
84254167 ATTATACAGG
*
84254177 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* ** * *
84254223 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCAAGGATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA-ATTCAGA
* * * * * *
84254267 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG------GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
* * * *
84254306 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATTCAGA
*
84254347 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * ** * *
84254393 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATTCAGA
*
84254437 T-TTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * ** * *
84254482 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATTCAGA
* * * *
84254526 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCA-GA
* * * * **
84254569 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-AATAAGAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGAAT-TCAGA
* * *
84254613 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
84254651 CACTATCTTA
Statistics
Matches: 333, Mismatches: 64, Indels: 62
0.73 0.14 0.14
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.07
40 1 0.00
41 27 0.08
42 8 0.02
43 59 0.18
44 100 0.30
45 9 0.03
46 101 0.30
47 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
Found at i:84254456 original size:89 final size:90
Alignment explanation
Indices: 84254347--84254643 Score: 424
Period size: 89 Copynumber: 3.3 Consensus size: 90
84254337 TCACATCAGG
*
84254347 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
84254412 CAGTGGAGCAGATTGAAGCCAGAGA
66 CAGTGGAGCAGATTGAAGCCAGAGA
*
84254437 T-TTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
84254501 CAGTGGAGCAGATTGAAGCCAGAGA
66 CAGTGGAGCAGATTGAAGCCAGAGA
* * * * * *
84254526 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A---CACTATCCTATCTCCCTGAAGTT
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATTTCA-GATCTTATCTCCCTGAGGTT
* * ***
84254587 ACAGTGGAGCGGATTAAAATAAGAGA
65 ACAGTGGAGCAGATTGAAGCCAGAGA
*
84254613 TCTTATCTCCCTGAGATTACAGCGGAGCAGA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGA
84254644 TCGAAGACAC
Statistics
Matches: 193, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
86 2 0.01
87 69 0.36
89 90 0.47
90 32 0.17
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (90 bp):
TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
CAGTGGAGCAGATTGAAGCCAGAGA
Found at i:84254546 original size:44 final size:43
Alignment explanation
Indices: 84254177--84254649 Score: 295
Period size: 44 Copynumber: 10.9 Consensus size: 43
84254167 ATTATACAGG
* *** * *
84254177 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
* * * * *
84254223 TCTTATCTCCCTGAGATTACAGCGGAGTAGA-TCAAGGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAG--A
* * * *
84254267 TCCTATCTCCTTGAGATTACAATGGAGCGGATT-AA--AG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAGA
* * * * *
84254306 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGA-TCACATCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGA-AGCAGAGA
* *** * *
84254347 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
*
84254393 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* *** * *
84254437 T-TTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---GAGA
*
84254482 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* * **
84254526 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAGAGA
* * * **
84254569 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAGAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT-GAAGCAGAGA
* *
84254613 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG
84254650 ACACTATCTT
Statistics
Matches: 330, Mismatches: 72, Indels: 53
0.73 0.16 0.12
Matches are distributed among these distances:
38 2 0.01
39 24 0.07
40 1 0.00
41 28 0.08
42 10 0.03
43 61 0.18
44 101 0.31
45 11 0.03
46 90 0.27
47 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAGAGA
Found at i:84254615 original size:87 final size:88
Alignment explanation
Indices: 84254177--84254680 Score: 430
Period size: 87 Copynumber: 5.8 Consensus size: 88
84254167 ATTATACAGG
*
84254177 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTG-AGATT
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAA--TCAGATCTTATCTCCCTGAAG-TT
* * * * *
84254241 ACAGCGGAGTAGA-TCAAG-GATAGTAA
63 ACAGTGGAGCAGATTGAAGCCAGAG--A
* * ** * * ** *
84254267 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GATCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCAGATCTTATCTCCCTGAAGTTACA
* * * *
84254327 GTAGAGAAGA-TCACA-TCAG-G-
66 GTGGAGCAGATTGA-AGCCAGAGA
* *
84254347 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAA--TCAGATCTTATCTCCCTGAAGTTA
84254412 CAGTGGAGCAGATTGAAGCCAGAGA
64 CAGTGGAGCAGATTGAAGCCAGAGA
* *
84254437 T-TTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAA--TCAGATCTTATCTCCCTGAAGTTA
84254501 CAGTGGAGCAGATTGAAGCCAGAGA
64 CAGTGGAGCAGATTGAAGCCAGAGA
* * * * *
84254526 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-CACTATCCTATCTCCCTGAAGTTAC
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCA-GATCTTATCTCCCTGAAGTTAC
* * ***
84254589 AGTGGAGCGGATTAAAATAAGAGA
65 AGTGGAGCAGATTGAAGCCAGAGA
* * * * * *
84254613 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-CACTATCTTATCCCCCTGAAGTTGC
1 TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCA-GATCTTATCTCCCTGAAGTTAC
84254676 AGTGG
65 AGTGG
84254681 CCCAAGTTGA
Statistics
Matches: 357, Mismatches: 41, Indels: 35
0.82 0.09 0.08
Matches are distributed among these distances:
80 30 0.08
83 30 0.08
84 4 0.01
86 2 0.01
87 133 0.37
88 5 0.01
89 91 0.25
90 62 0.17
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (88 bp):
TCTTATCTCCCTGAGATTACAGCGGAACAGACCAAAGAATCAGATCTTATCTCCCTGAAGTTACA
GTGGAGCAGATTGAAGCCAGAGA
Found at i:84254708 original size:87 final size:87
Alignment explanation
Indices: 84254485--84254713 Score: 255
Period size: 87 Copynumber: 2.6 Consensus size: 87
84254475 TTTCAGATCT
* * * * *** **
84254485 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCCCCCTGAAGTTACAGTGGACCAGATTAAAATAAGAGATCCGATCTCCCTGAGATTACAGCG
84254550 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
* * * **
84254572 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCCCCCTGAAGTTACAGTGGACCAGATTAAAATAAGAGATCCGATCTCCCTGAGATTACAGCG
*
84254637 GAGCAGATCGAAGACACTATCT
66 GAGCAGATCGAAGACACTATCC
* * * *
84254659 TATCCCCCTGAAGTTGCAGTGGCCCA-AGTTGAAGATATGAG-TCCGATCTCCCTGA
1 TATCCCCCTGAAGTTACAGTGGACCAGA-TT-AAAATAAGAGATCCGATCTCCCTGA
84254714 AGTCGCAGTG
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
86 1 0.01
87 115 0.93
88 8 0.06
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (87 bp):
TATCCCCCTGAAGTTACAGTGGACCAGATTAAAATAAGAGATCCGATCTCCCTGAGATTACAGCG
GAGCAGATCGAAGACACTATCC
Found at i:84256820 original size:5 final size:5
Alignment explanation
Indices: 84256806--84256834 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
84256796 ACATAAGTGC
84256806 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
84256835 AATGTTTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:84262482 original size:5 final size:5
Alignment explanation
Indices: 84262472--84262500 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
84262462 GGGACATTGC
84262472 CCCTA CCCTA CCCTA CCCTA CCCTA CCCT
1 CCCTA CCCTA CCCTA CCCTA CCCTA CCCT
84262501 CTCTATCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.62, G:0.00, T:0.21
Consensus pattern (5 bp):
CCCTA
Found at i:84263671 original size:35 final size:35
Alignment explanation
Indices: 84263616--84263684 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
84263606 ATTTGCCAAG
84263616 TATAAATAATTAATAATAAATACCATATAATTTAA
1 TATAAATAATTAATAATAAATACCATATAATTTAA
** * * *
84263651 TATAAATAATTTGTAGTAAATACTATGTAATTTA
1 TATAAATAATTAATAATAAATACCATATAATTTA
84263685 GTTAACTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (35 bp):
TATAAATAATTAATAATAAATACCATATAATTTAA
Found at i:84263784 original size:24 final size:22
Alignment explanation
Indices: 84263757--84263806 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
84263747 TATTTAAACC
84263757 ATATTAGTAAAATAATATATAAAT
1 ATATT-GTAAAAT-ATATATAAAT
* * *
84263781 ATATTTTAAAATATATGTATAT
1 ATATTGTAAAATATATATAAAT
84263803 ATAT
1 ATAT
84263807 CCTAAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 12 0.52
23 6 0.26
24 5 0.22
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
ATATTGTAAAATATATATAAAT
Found at i:84263812 original size:22 final size:23
Alignment explanation
Indices: 84263764--84263814 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
84263754 ACCATATTAG
**
84263764 TAAAATAATATATAAATATATTT
1 TAAAATAATATATAAATATATCC
* *
84263787 TAAAAT-ATATGTATATATATCC
1 TAAAATAATATATAAATATATCC
84263809 TAAAAT
1 TAAAAT
84263815 TAAAATAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (23 bp):
TAAAATAATATATAAATATATCC
Found at i:84284127 original size:18 final size:18
Alignment explanation
Indices: 84284106--84284204 Score: 76
Period size: 18 Copynumber: 5.3 Consensus size: 18
84284096 TATTATTTTA
84284106 CTTTTTATTACTGTGTTT
1 CTTTTTATTACTGTGTTT
* * *
84284124 CTTTTCAAATTATTAT-TTT
1 CTTTT--TATTACTGTGTTT
84284143 ACTTTTTATTACTGTGTTT
1 -CTTTTTATTACTGTGTTT
* * *
84284162 CTTTTCAAATTATTAT-TTT
1 CTTTT--TATTACTGTGTTT
84284181 ACTTTTTATTACTGTGTTT
1 -CTTTTTATTACTGTGTTT
84284200 CTTTT
1 CTTTT
84284205 CTTTTTTTTG
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
18 27 0.44
19 12 0.20
20 22 0.36
ACGTcount: A:0.18, C:0.11, G:0.06, T:0.65
Consensus pattern (18 bp):
CTTTTTATTACTGTGTTT
Found at i:84284136 original size:23 final size:23
Alignment explanation
Indices: 84284110--84284176 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 23
84284100 ATTTTACTTT
84284110 TTATTACTGTGTTTCTTTTCAAA
1 TTATTACTGTGTTTCTTTTCAAA
*
84284133 TTATTA-T-T-TTACTTTT----
1 TTATTACTGTGTTTCTTTTCAAA
84284149 -TATTACTGTGTTTCTTTTCAAA
1 TTATTACTGTGTTTCTTTTCAAA
84284171 TTATTA
1 TTATTA
84284177 TTTTACTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
15 5 0.15
16 1 0.03
17 1 0.03
18 7 0.21
20 7 0.21
21 1 0.03
22 1 0.03
23 11 0.32
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.61
Consensus pattern (23 bp):
TTATTACTGTGTTTCTTTTCAAA
Found at i:84284141 original size:38 final size:38
Alignment explanation
Indices: 84284090--84284205 Score: 232
Period size: 38 Copynumber: 3.1 Consensus size: 38
84284080 GACTTAGAGG
84284090 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
1 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
84284128 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
1 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
84284166 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
1 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
84284204 TC
1 TC
84284206 TTTTTTTTGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (38 bp):
TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
Found at i:84284147 original size:20 final size:20
Alignment explanation
Indices: 84284090--84284186 Score: 80
Period size: 20 Copynumber: 5.0 Consensus size: 20
84284080 GACTTAGAGG
84284090 TCAAATTATTATTTTACTTT
1 TCAAATTATTATTTTACTTT
* * *
84284110 T--TATTACTGTGTTT-CTTT
1 TCAAATTATTAT-TTTACTTT
84284128 TCAAATTATTATTTTACTTT
1 TCAAATTATTATTTTACTTT
* * *
84284148 T--TATTACTGTGTTT-CTTT
1 TCAAATTATTAT-TTTACTTT
84284166 TCAAATTATTATTTTACTTT
1 TCAAATTATTATTTTACTTT
84284186 T
1 T
84284187 TATTACTGTG
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
18 22 0.39
19 12 0.21
20 23 0.40
ACGTcount: A:0.23, C:0.10, G:0.04, T:0.63
Consensus pattern (20 bp):
TCAAATTATTATTTTACTTT
Found at i:84287242 original size:49 final size:48
Alignment explanation
Indices: 84287184--84287281 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 48
84287174 TAATATGTTA
*
84287184 ACTCTAGTATGCATGTCATCCTTTTATTTTAAATATTTTTATGTTAACT
1 ACTCTAGTATGCATGTCATCCTTTTATTTTAAACA-TTTTATGTTAACT
84287233 ACTCTAGTATGCATGTCATCCTTTTATTTTAAACATTTTATGTTAACT
1 ACTCTAGTATGCATGTCATCCTTTTATTTTAAACATTTTATGTTAACT
84287281 A
1 A
84287282 AATTATGATA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 14 0.29
49 34 0.71
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (48 bp):
ACTCTAGTATGCATGTCATCCTTTTATTTTAAACATTTTATGTTAACT
Found at i:84288052 original size:16 final size:17
Alignment explanation
Indices: 84288024--84288055 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
84288014 TAAAGTAAAT
84288024 AAAAGAAATTAAAAAGA
1 AAAAGAAATTAAAAAGA
84288041 AAAAGAAA-TAAAAAG
1 AAAAGAAATTAAAAAG
84288056 GTGGAACGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.09
Consensus pattern (17 bp):
AAAAGAAATTAAAAAGA
Found at i:84295629 original size:12 final size:12
Alignment explanation
Indices: 84295612--84295656 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
84295602 ACAGAGCAGG
84295612 GAAAGAAAGAA-A
1 GAAAGAAA-AAGA
84295624 GAAAGAAAAAGA
1 GAAAGAAAAAGA
84295636 GAAAGAAAAAGA
1 GAAAGAAAAAGA
*
84295648 -AAGGAAAAA
1 GAAAGAAAAA
84295657 TAGGGTTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 10 0.32
12 21 0.68
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGA
Found at i:84301118 original size:37 final size:37
Alignment explanation
Indices: 84301022--84301126 Score: 113
Period size: 37 Copynumber: 2.8 Consensus size: 37
84301012 TTCTAATCAA
*
84301022 AACATGCCAATCGCTCATAAGAGCTAATCCATTTGAT
1 AACATGCCAATCGCTCATAAGAGCTAATCCACTTGAT
* * * *
84301059 AACACGCCAGTTGCGT-ATAAGAGCTCATCCACTTGAT
1 AACATGCCAATCGC-TCATAAGAGCTAATCCACTTGAT
* ** *
84301096 ATCATGCCAATCGCTCCGAAGAGCTAGTCCA
1 AACATGCCAATCGCTCATAAGAGCTAATCCA
84301127 ACCGAAAACA
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
36 1 0.02
37 51 0.96
38 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (37 bp):
AACATGCCAATCGCTCATAAGAGCTAATCCACTTGAT
Found at i:84303483 original size:54 final size:55
Alignment explanation
Indices: 84303401--84303513 Score: 201
Period size: 54 Copynumber: 2.1 Consensus size: 55
84303391 GCTTGATTAG
84303401 ATCCATTAATTGAGTTTGTTGGGATTTATA-CTCAAAGGGTTCAATTGGACGGTT
1 ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAAAGGGTTCAATTGGACGGTT
* *
84303455 ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAGAGGGTTCAATTGGACGTTT
1 ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAAAGGGTTCAATTGGACGGTT
84303510 ATCC
1 ATCC
84303514 TTTTATCTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
54 30 0.54
55 26 0.46
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (55 bp):
ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAAAGGGTTCAATTGGACGGTT
Found at i:84311013 original size:30 final size:29
Alignment explanation
Indices: 84310946--84311015 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
84310936 TTTATATATA
* *
84310946 TATTTATATAATTTATTTATTTTAAATAT
1 TATTTATATAATTTATTTACTTTAAACAT
* *
84310975 T-TTGTATATTATTTATTTTACTTTAAACCT
1 TATT-TATATAATTTA-TTTACTTTAAACAT
84311005 TATTTATATAA
1 TATTTATATAA
84311016 AAAATATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
28 2 0.06
29 11 0.33
30 18 0.55
31 2 0.06
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (29 bp):
TATTTATATAATTTATTTACTTTAAACAT
Found at i:84311085 original size:19 final size:19
Alignment explanation
Indices: 84311038--84311085 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
84311028 TTATTTGTAT
* * *
84311038 TATATAATATATTTTATTG
1 TATATAATTTATTATATTA
*
84311057 TATATTATTTATTATATTA
1 TATATAATTTATTATATTA
*
84311076 TGTATAATTT
1 TATATAATTT
84311086 TAAAATTTTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TATATAATTTATTATATTA
Found at i:84311140 original size:13 final size:13
Alignment explanation
Indices: 84311093--84311141 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
84311083 TTTTAAAATT
84311093 TTAAA-ATTATTA
1 TTAAATATTATTA
*
84311105 TTAAATATTACATTT
1 TTAAATATT--ATTA
*
84311120 TTATATATTATTA
1 TTAAATATTATTA
84311133 TTAAATATT
1 TTAAATATT
84311142 TAGTATGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
12 5 0.17
13 14 0.47
15 11 0.37
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAAATATTATTA
Found at i:84311679 original size:119 final size:112
Alignment explanation
Indices: 84311534--84311747 Score: 266
Period size: 112 Copynumber: 1.8 Consensus size: 112
84311524 GTTATTTTAG
* * * * **
84311534 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTGTTTT
1 TTATATCTGCATGAAATATTA----ATGTATATTATGTAATTCATATCGTTAT-TT-ATCATTTT
* * *
84311599 CTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTATGA
60 CTATATTATA-TTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGA
* *
84311653 TTATATCTGCATGAAATGTTAATGTATATTATGTAATTCATGTCGTTATTTATCATTTTCTATAT
1 TTATATCTGCATGAAATATTAATGTATATTATGTAATTCATATCGTTATTTATCATTTTCTATAT
84311718 TATATTTGCATGAAATGTTAAAGTATGTAT
66 TATATTTGCATGAAATGTTAAAGTATGTAT
84311748 CATGTAGTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
112 25 0.30
113 14 0.17
114 2 0.02
115 24 0.29
119 19 0.23
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (112 bp):
TTATATCTGCATGAAATATTAATGTATATTATGTAATTCATATCGTTATTTATCATTTTCTATAT
TATATTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGA
Found at i:84321323 original size:40 final size:40
Alignment explanation
Indices: 84321252--84321362 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
84321242 TATCTAGCAC
* *
84321252 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACAA
1 AGCCTGCAGGTCTTTAAGCCCGGAT-ACAATTCCAGCACAA
* *
84321291 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACAA
84321331 AGCCTGCAGGTCTTTAAGCCCGGATACAATTC
1 AGCCTGCAGGTCTTTAAGCCCGGATACAATTC
84321363 GGGTCTTTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.25
40 49 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACAA
Found at i:84321373 original size:25 final size:25
Alignment explanation
Indices: 84321339--84321387 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
84321329 GAAGCCTGCA
84321339 GGTCTTTAAGCCCGGATACAATTCG
1 GGTCTTTAAGCCCGGATACAATTCG
84321364 GGTCTTTAAGCCCGGATACAATTC
1 GGTCTTTAAGCCCGGATACAATTC
84321388 CAGCACGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
GGTCTTTAAGCCCGGATACAATTCG
Found at i:84321408 original size:65 final size:65
Alignment explanation
Indices: 84321297--84321427 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
84321287 ACAAAGCCTG
*
84321297 CGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCAGGTCTTTAAGCCCGGATACAATT
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCAGGTCTTTAAGCCCAGATACAATT
* *
84321362 CGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGGTCTTTAAGCCCAGATACAATT
1 CGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCAGGTCTTTAAGCCCAGATACAATT
84321427 C
1 C
84321428 CACATCAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (65 bp):
CGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCAGGTCTTTAAGCCCAGATACAATT
Found at i:84328300 original size:43 final size:45
Alignment explanation
Indices: 84328239--84328339 Score: 109
Period size: 43 Copynumber: 2.3 Consensus size: 45
84328229 AGCCACTAGC
*
84328239 CTTATCTCTCTAACGTAGCAA-AAGAGCAGATTGAAGAAT-AAG-T
1 CTTATCTCTCTAACGTAGCAAGAA-AGCAGACTGAAGAATGAAGAT
* * * * *
84328282 CTTATCTTTCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAAGAT
1 CTTATCTCTCTAACGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
*
84328327 CTTATCTCCCTAA
1 CTTATCTCTCTAA
84328340 AGTTACAGCG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
43 30 0.65
44 5 0.11
45 11 0.24
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (45 bp):
CTTATCTCTCTAACGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:84328500 original size:176 final size:177
Alignment explanation
Indices: 84328190--84328971 Score: 1034
Period size: 176 Copynumber: 4.4 Consensus size: 177
84328180 GCAGATTGAA
* * * * *
84328190 GAATCTTATCTCCATGTATTGGCAATGGAGCAAGATTTAAGCCACTAGCCTTATCTCTCTAACGT
1 GAATCTTATCTCCATGTATCGGCAATGGAGC-AGATTTTAGCCACCAGCCTTATCTCTCTGAGGT
* * * * *
84328255 AGCAAAAGAGCAGATTGAAGAATAAGTCTTATCTTTCTGAGGTAGCAAGAAAGTAGACTGAAGAT
65 AGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGAT
* * * *
84328320 TGAAGATCTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGATGGT
130 TAAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
84328368 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAGCCTTATCTCTCTGAGGTA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* * * * *
84328432 GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAAAAAGCAAACTAAAAATT
66 GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATT
* * * *
84328497 GAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGATGGT
131 AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
*
84328544 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCATCAGCCTTATCTCTCTGAGGTA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* *
84328608 GCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTTCTAAGGTAGTAAGAAAGCAGACTGAAGATT
66 GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATT
* * *
84328673 AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGTAGATCCAAAATGGC
131 AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
* * * *
84328720 GAATCTTATCTCCATGTATCGGCAATGGAGTAGATTTAAGCCACCAGCCTTATCTATCTGAGATA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* * *
84328785 GCAAGAGAGCAGGTTGAAGAATTGAGTTTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
66 GCAAGAGAGCAGGTTGAAGAA-TGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGAT
* * ** * * * *
84328850 TAAAGATTTTATCT-CCTTAAGCAGTAGCAGAACAGATTGAA-A-GGC
130 TAAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
* * * * * * * *
84328895 GGATCTTATCTCCATATATCGACAATGGAGCAGATTTTAGCCACTAGACTTATCTTTTTGAGGAA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
*
84328960 GCAAGAAAGCAG
66 GCAAGAGAGCAG
84328972 ATTGGTAATT
Statistics
Matches: 540, Mismatches: 62, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
175 68 0.13
176 321 0.59
177 68 0.13
178 83 0.15
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (177 bp):
GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATT
AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
Found at i:84328595 original size:88 final size:87
Alignment explanation
Indices: 84328327--84328603 Score: 206
Period size: 88 Copynumber: 3.1 Consensus size: 87
84328317 GATTGAAGAT
* * *
84328327 CTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
1 CTTATCTCCCTGAAGTTGCAG-GGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
*
84328392 ATGGAGCAGATTTTACCACCAGC
65 ATGGAGCAGATTTTACCATCAGC
* * * * * * * * * *
84328415 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA--ATGAGTCTTATCTTTC-TG-AGGT-A
1 CTTATCTCCCTGAAGTTGC-AGGGAGCAGATCGAAGATGGTGAATCTTATC-TCCATGTA--TCG
*** ** * ** * *
84328475 GCAAAAAAGCA-AACTAAAAATTGAAGAT
62 GCAATGGAGCAGATTTTACCA-T-CAG-C
84328503 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
1 CTTATCTCCCTGAAGTTGCAG-GGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
84328568 ATGGAGCAGATTTTACCATCAGC
65 ATGGAGCAGATTTTACCATCAGC
*
84328591 CTTATCTCTCTGA
1 CTTATCTCCCTGA
84328604 GGTAGCAAGA
Statistics
Matches: 130, Mismatches: 45, Indels: 28
0.64 0.22 0.14
Matches are distributed among these distances:
85 5 0.04
86 20 0.15
87 7 0.05
88 65 0.50
89 7 0.05
90 21 0.16
91 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (87 bp):
CTTATCTCCCTGAAGTTGCAGGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCAA
TGGAGCAGATTTTACCATCAGC
Found at i:84331499 original size:8 final size:8
Alignment explanation
Indices: 84331486--84331516 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
84331476 AATAGTTTCA
84331486 AATTCATC
1 AATTCATC
84331494 AATTCATC
1 AATTCATC
84331502 AATTCATC
1 AATTCATC
84331510 AATTCAT
1 AATTCAT
84331517 ATATTATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (8 bp):
AATTCATC
Found at i:84337034 original size:28 final size:27
Alignment explanation
Indices: 84336994--84337074 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 27
84336984 TAACGAGCTC
*
84336994 TCTATTTTGATAAGCACTTCGGTGTTGT
1 TCTATTCTGATAAGCACTT-GGTGTTGT
*
84337022 TCTATTCTGATAAGTACATTGGTGTTGT
1 TCTATTCTGATAAGCAC-TTGGTGTTGT
84337050 TCTATTCT-ATTAACGCACTTTGGTG
1 TCTATTCTGA-TAA-GCAC-TTGGTG
84337075 CCCTCTGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 34 0.74
29 11 0.24
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (27 bp):
TCTATTCTGATAAGCACTTGGTGTTGT
Found at i:84341270 original size:40 final size:39
Alignment explanation
Indices: 84341221--84341351 Score: 181
Period size: 40 Copynumber: 3.3 Consensus size: 39
84341211 TAACTCATAC
* *
84341221 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
84341261 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
84341301 AAGGCCTTCGGGACTTAACTCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
84341341 AATGCCTTCGG
1 AATGCCTTCGG
84341352 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:84341335 original size:80 final size:80
Alignment explanation
Indices: 84341219--84341404 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
84341209 AGTAACTCAT
* * *
84341219 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
84341283 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
* **
84341298 ACAAAGGCCTTCGGGACTTAACTCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
84341362 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
84341379 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
84341405 CAGCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
79 11 0.12
80 70 0.76
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:84349190 original size:39 final size:40
Alignment explanation
Indices: 84349147--84349314 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
84349137 CTCGTTCAAG
* * * *
84349147 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
84349186 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
84349226 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
84349266 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
84349306 TGCCTTCGG
1 TGCCTTCGG
84349315 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:84349298 original size:80 final size:80
Alignment explanation
Indices: 84349182--84349367 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
84349172 AGTAACTCAT
* * *
84349182 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
84349246 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
84349261 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
84349325 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
84349342 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
84349368 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:84349327 original size:40 final size:40
Alignment explanation
Indices: 84349184--84349367 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
84349174 TAACTCATAC
* *
84349184 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
84349224 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
84349264 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
84349304 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
84349345 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
84349368 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:84351012 original size:30 final size:29
Alignment explanation
Indices: 84350978--84351035 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
84350968 AACCCTATTT
*
84350978 TTTTAAAAAAAATTACCAGATTAGGCCAAC
1 TTTT-AAAAAAATCACCAGATTAGGCCAAC
* **
84351008 TTTTAGAAAAATCACGGGATTAGGCCAA
1 TTTTAAAAAAATCACCAGATTAGGCCAA
84351036 AAATACGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (29 bp):
TTTTAAAAAAATCACCAGATTAGGCCAAC
Found at i:84355995 original size:26 final size:26
Alignment explanation
Indices: 84355966--84356125 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
84355956 TGGTACAAAT
*
84355966 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
* **
84355992 TGATAATGGATTAGGTAAACATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84356018 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
84356044 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84356070 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
84356096 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84356122 TGAT
1 TGAT
84356126 GGGCATTTCA
Statistics
Matches: 122, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 122 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:84356028 original size:52 final size:52
Alignment explanation
Indices: 84355966--84356125 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
84355956 TGGTACAAAT
* *
84355966 TGATAATGGGTTAGGTAAATGTTCTATGATAATGGATTAGGTAAACATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
84356018 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
84356070 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
84356122 TGAT
1 TGAT
84356126 GGGCATTTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:84362648 original size:19 final size:17
Alignment explanation
Indices: 84362626--84362668 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
84362616 TATATAGAAC
84362626 TTTTTATTTTTTTAAATAA
1 TTTTTATTTTTTT--ATAA
*
84362645 TTTTGATTTTTTTATAA
1 TTTTTATTTTTTTATAA
84362662 TTTTTAT
1 TTTTTAT
84362669 ATAAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 10 0.45
19 12 0.55
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTTATTTTTTTATAA
Found at i:84372015 original size:50 final size:49
Alignment explanation
Indices: 84371956--84372054 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 49
84371946 CAGCCACTGC
**
84371956 TAATCAACTACTCATGGAGGGAGTTAGAGATAAAGATAACAAATAGTAAG
1 TAATCAACTACTCATGGAGACAGTTAGAGAT-AAGATAACAAATAGTAAG
84372006 TAATCAACTACTCATGGAGACAGTTAGAGATAAGATAACAAATAGTAAG
1 TAATCAACTACTCATGGAGACAGTTAGAGATAAGATAACAAATAGTAAG
84372055 GAAGAGGATA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 18 0.38
50 29 0.62
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.22
Consensus pattern (49 bp):
TAATCAACTACTCATGGAGACAGTTAGAGATAAGATAACAAATAGTAAG
Found at i:84372362 original size:23 final size:23
Alignment explanation
Indices: 84372336--84372392 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
84372326 AATTATTGAT
84372336 TATTTTTATTTAAATATTTTAAA
1 TATTTTTATTTAAATATTTTAAA
* * *
84372359 TATTTTGATCATCAATATTTTAAA
1 TATTTTTAT-TTAAATATTTTAAA
84372383 -ATTTTCTATT
1 TATTTT-TATT
84372393 ATAGTTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTTTTATTTAAATATTTTAAA
Found at i:84372599 original size:16 final size:16
Alignment explanation
Indices: 84372578--84372608 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84372568 TAATATTGAT
*
84372578 TTTTAAAAATTAAAAA
1 TTTTAAAAACTAAAAA
84372594 TTTTAAAAACTAAAA
1 TTTTAAAAACTAAAA
84372609 TTTCTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
TTTTAAAAACTAAAAA
Found at i:84372671 original size:20 final size:19
Alignment explanation
Indices: 84372627--84372675 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
84372617 AAAGCTTTTT
* *
84372627 TTATAAATATACATAAAAT
1 TTATAAAAATACATAAAAA
84372646 TCTATAAAAATACATACAAAA
1 T-TATAAAAATACATA-AAAA
84372667 TTATAAAAA
1 TTATAAAAA
84372676 ATACTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.81
21 4 0.15
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
TTATAAAAATACATAAAAA
Found at i:84373383 original size:11 final size:11
Alignment explanation
Indices: 84373363--84373403 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
84373353 AAAAATGAAC
84373363 TTTTAATTTTT
1 TTTTAATTTTT
84373374 TTTT-A-TTTT
1 TTTTAATTTTT
* *
84373383 TTATAGTTTTT
1 TTTTAATTTTT
84373394 TTTTAATTTT
1 TTTTAATTTT
84373404 GAATTTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 16 0.67
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (11 bp):
TTTTAATTTTT
Found at i:84374446 original size:10 final size:9
Alignment explanation
Indices: 84374381--84374578 Score: 62
Period size: 10 Copynumber: 20.2 Consensus size: 9
84374371 AAAACACACC
84374381 ATTATAAAA
1 ATTATAAAA
84374390 ATTATTTAAAAA
1 ATTA--T-AAAA
*
84374402 ATTATAAAT
1 ATTATAAAA
84374411 A-TA-AAAA
1 ATTATAAAA
* *
84374418 ATCACAAAA
1 ATTATAAAA
**
84374427 ACTGCTAAAA
1 A-TTATAAAA
84374437 ATTATAAAA
1 ATTATAAAA
* *
84374446 ATTATTAGCGAT
1 ATTA-TA--AAA
84374458 ATTACTAAAA
1 ATTA-TAAAA
*
84374468 A--ACAAATA
1 ATTATAAA-A
84374476 ATTATAGAAA
1 ATTATA-AAA
84374486 ATTATAAAA
1 ATTATAAAA
* * *
84374495 ATTTCTGGAGA
1 A-TTAT-AAAA
*
84374506 ATCATAAATA
1 ATTATAAA-A
84374516 ATAATTATAAATA
1 AT--T-ATAAA-A
84374529 ATTATAAAA
1 ATTATAAAA
*
84374538 ATGATAAAAA
1 ATTAT-AAAA
*
84374548 ATTAAAAAA
1 ATTATAAAA
84374557 ATTATAGAAA
1 ATTATA-AAA
84374567 ATTATGAAAA
1 ATTAT-AAAA
84374577 AT
1 AT
84374579 ATATTTTTTT
Statistics
Matches: 140, Mismatches: 27, Indels: 43
0.67 0.13 0.20
Matches are distributed among these distances:
7 7 0.05
8 6 0.04
9 42 0.30
10 53 0.38
11 8 0.06
12 15 0.11
13 9 0.06
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (9 bp):
ATTATAAAA
Found at i:84374497 original size:19 final size:19
Alignment explanation
Indices: 84374475--84374578 Score: 75
Period size: 19 Copynumber: 5.2 Consensus size: 19
84374465 AAAAACAAAT
84374475 AATTATAGAAAATTATAAA
1 AATTATAGAAAATTATAAA
* * * *
84374494 AATTTCTGGAGAATCATAAATAAT
1 AA-TTAT--AGAA-AAT-TATAAA
84374518 AATTATA-AATAATTATAAA
1 AATTATAGAA-AATTATAAA
* * *
84374537 AATGATAAAAAATTAAAAA
1 AATTATAGAAAATTATAAA
84374556 AATTATAGAAAATTATGAAA
1 AATTATAGAAAATTAT-AAA
84374576 AAT
1 AAT
84374579 ATATTTTTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 13
0.71 0.14 0.14
Matches are distributed among these distances:
19 33 0.51
20 16 0.25
21 1 0.02
22 4 0.06
23 5 0.08
24 6 0.09
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.31
Consensus pattern (19 bp):
AATTATAGAAAATTATAAA
Found at i:84379205 original size:28 final size:28
Alignment explanation
Indices: 84379165--84379220 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
84379155 CATGTTTGGA
84379165 GATAGATTTCACTTTCATAAAATCTGCT
1 GATAGATTTCACTTTCATAAAATCTGCT
84379193 GATAGATTTCACTTTCATAAAATCTGCT
1 GATAGATTTCACTTTCATAAAATCTGCT
84379221 TTTCAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (28 bp):
GATAGATTTCACTTTCATAAAATCTGCT
Found at i:84379830 original size:24 final size:25
Alignment explanation
Indices: 84379787--84379836 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
84379777 AAAATGATTG
84379787 TTTGATGAAATTTTATATACCACTA
1 TTTGATGAAATTTTATATACCACTA
84379812 TTTGATGAAA-TTTATATACCACTA
1 TTTGATGAAATTTTATATACCACTA
84379836 T
1 T
84379837 CTAAAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (25 bp):
TTTGATGAAATTTTATATACCACTA
Found at i:84383281 original size:19 final size:19
Alignment explanation
Indices: 84383238--84383283 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
84383228 AAATGAAAAT
* *
84383238 TAAATTAAAGTTAATTAAGC
1 TAAATT-AAGGTAATTAAAC
*
84383258 CAAATTAAGGTAATTAAAC
1 TAAATTAAGGTAATTAAAC
84383277 TAAATTA
1 TAAATTA
84383284 CTTAAATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (19 bp):
TAAATTAAGGTAATTAAAC
Found at i:84385304 original size:29 final size:30
Alignment explanation
Indices: 84385262--84385320 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
84385252 GTAGATTGTA
* *
84385262 AAAGGTTTTTAGTTGAGCCACAAAA-CTAG
1 AAAGGGTTCTAGTTGAGCCACAAAAGCTAG
* *
84385291 AAAGGGTTCTAGTTTAGCCATAAAAGCTAG
1 AAAGGGTTCTAGTTGAGCCACAAAAGCTAG
84385321 GGTGAAAGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAGGGTTCTAGTTGAGCCACAAAAGCTAG
Found at i:84389907 original size:10 final size:10
Alignment explanation
Indices: 84389892--84389946 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 10
84389882 TAATTTTTTA
84389892 AAAATATATT
1 AAAATATATT
*
84389902 AAAATAAATT
1 AAAATATATT
*
84389912 AAAAT-TACT
1 AAAATATATT
84389921 AAAA-ATA-T
1 AAAATATATT
*
84389929 AAAATGTATT
1 AAAATATATT
84389939 AAAA-ATAT
1 AAAATATAT
84389947 AAATAATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 5 0.14
9 13 0.35
10 19 0.51
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAATATATT
Found at i:84389933 original size:17 final size:18
Alignment explanation
Indices: 84389907--84389949 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
84389897 ATATTAAAAT
84389907 AAAT-TAAAAT-TACTAA
1 AAATATAAAATGTACTAA
*
84389923 AAATATAAAATGTATTAA
1 AAATATAAAATGTACTAA
84389941 AAATATAAA
1 AAATATAAA
84389950 TAATTATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.17
17 6 0.25
18 14 0.58
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATATAAAATGTACTAA
Found at i:84389943 original size:18 final size:17
Alignment explanation
Indices: 84389892--84389969 Score: 66
Period size: 19 Copynumber: 4.2 Consensus size: 17
84389882 TAATTTTTTA
*
84389892 AAAATATATTAAAATAAATT
1 AAAAT-TATTAAAA-ATA-T
*
84389912 AAAATTACTAAAAATAT
1 AAAATTATTAAAAATAT
84389929 AAAATGTATTAAAAATAT
1 AAAAT-TATTAAAAATAT
*
84389947 AAATAATTATTATAAAAAAT
1 -AA-AATTATTA-AAAATAT
84389967 AAA
1 AAA
84389970 TAAATATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.12
18 14 0.28
19 16 0.32
20 14 0.28
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (17 bp):
AAAATTATTAAAAATAT
Found at i:84389952 original size:22 final size:22
Alignment explanation
Indices: 84389927--84390007 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 22
84389917 TACTAAAAAT
*
84389927 ATAAAATGTATTA-AAAATATAA
1 ATAAAAT-TATTATAAAAAATAA
84389949 AT--AATTATTATAAAAAATAA
1 ATAAAATTATTATAAAAAATAA
* *
84389969 ATAAATATT-TTATATTAATATTAA
1 ATAAA-ATTATTATA--AAAAATAA
84389993 ATAAAAATTATTATA
1 AT-AAAATTATTATA
84390008 TTAATATGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 5 0.10
20 13 0.27
22 8 0.17
23 3 0.06
24 11 0.23
25 8 0.17
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (22 bp):
ATAAAATTATTATAAAAAATAA
Found at i:84389955 original size:37 final size:38
Alignment explanation
Indices: 84389892--84389969 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 38
84389882 TAATTTTTTA
* *
84389892 AAAATATATTAAAATAAATTAAAATTACTA-AAAATAT
1 AAAATATATTAAAATAAATAAAAATTACTATAAAAAAT
* * *
84389929 AAAATGTATTAAAA-ATATAAATAATTATTATAAAAAAT
1 AAAATATATTAAAATAAATAAA-AATTACTATAAAAAAT
84389967 AAA
1 AAA
84389970 TAAATATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 5 0.15
37 20 0.59
38 9 0.26
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (38 bp):
AAAATATATTAAAATAAATAAAAATTACTATAAAAAAT
Found at i:84389968 original size:20 final size:19
Alignment explanation
Indices: 84389898--84389977 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 19
84389888 TTTAAAAATA
*
84389898 TATTAAAATAAATTAA-AAT
1 TATTAAAA-AAATAAATAAT
* *
84389917 TACTAAAAATAT-AA-AAT
1 TATTAAAAAAATAAATAAT
*
84389934 GTATTAAAAATATAAATAAT
1 -TATTAAAAAAATAAATAAT
*
84389954 TATTATAAAAAATAAATAAA
1 TATTA-AAAAAATAAATAAT
84389974 TATT
1 TATT
84389978 TTATATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
17 5 0.10
18 14 0.27
19 14 0.27
20 19 0.37
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (19 bp):
TATTAAAAAAATAAATAAT
Found at i:84389972 original size:24 final size:25
Alignment explanation
Indices: 84389938--84390022 Score: 74
Period size: 24 Copynumber: 3.6 Consensus size: 25
84389928 TAAAATGTAT
84389938 TAAAAAT--ATAAATAATTATTATA
1 TAAAAATAAATAAATAATTATTATA
84389961 -AAAAATAAATAAAT-ATT-TTATA
1 TAAAAATAAATAAATAATTATTATA
* *
84389983 TTAATATTAAATAAA-AATTATTATA
1 -TAAAAATAAATAAATAATTATTATA
* *
84390008 TTAATATGAAATAAA
1 TAAAAAT-AAATAAA
84390023 ATAACTCTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
22 11 0.22
23 3 0.06
24 23 0.47
25 12 0.24
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (25 bp):
TAAAAATAAATAAATAATTATTATA
Done.