Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: A05 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 100714657 ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32 Warning! 3970000 characters in sequence are not A, C, G, or T File 263 of 318 Found at i:84390011 original size:25 final size:25 Alignment explanation
Indices: 84389945--84390023 Score: 92 Period size: 25 Copynumber: 3.2 Consensus size: 25 84389935 TATTAAAAAT * * 84389945 ATAAATAATTATTATA--AAAAATAA 1 ATAAA-AATTATTATATTAATATTAA * 84389969 ATAAATATT-TTATATTAATATTAA 1 ATAAAAATTATTATATTAATATTAA * 84389993 ATAAAAATTATTATATTAATATGAA 1 ATAAAAATTATTATATTAATATTAA 84390018 ATAAAA 1 ATAAAA 84390024 TAACTCTCTC Statistics Matches: 47, Mismatches: 5, Indels: 5 0.82 0.09 0.09 Matches are distributed among these distances: 22 5 0.11 23 3 0.06 24 19 0.40 25 20 0.43 ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39 Consensus pattern (25 bp): ATAAAAATTATTATATTAATATTAA Found at i:84391640 original size:20 final size:20 Alignment explanation
Indices: 84391615--84391652 Score: 60 Period size: 20 Copynumber: 1.9 Consensus size: 20 84391605 AGAGAGTTTA 84391615 TTTTATTTTAATA-TAATAAG 1 TTTTA-TTTAATATTAATAAG 84391635 TTTTATTTAATATTAATA 1 TTTTATTTAATATTAATA 84391653 TAAAAAATTT Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 19 7 0.41 20 10 0.59 ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58 Consensus pattern (20 bp): TTTTATTTAATATTAATAAG Found at i:84391642 original size:25 final size:25 Alignment explanation
Indices: 84391611--84391673 Score: 90 Period size: 25 Copynumber: 2.5 Consensus size: 25 84391601 TGGGAGAGAG * * * 84391611 TTTATTTTATTTTAATATAATAAGT 1 TTTATTTAATTTTAATATAAAAAAT * 84391636 TTTATTTAATATTAATATAAAAAAT 1 TTTATTTAATTTTAATATAAAAAAT 84391661 TTTATTTAATTTT 1 TTTATTTAATTTT 84391674 TATAATTTTT Statistics Matches: 33, Mismatches: 5, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 33 1.00 ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59 Consensus pattern (25 bp): TTTATTTAATTTTAATATAAAAAAT Found at i:84391681 original size:9 final size:10 Alignment explanation
Indices: 84391667--84391720 Score: 53 Period size: 9 Copynumber: 5.7 Consensus size: 10 84391657 AAATTTTATT 84391667 TAATTTTT-A 1 TAATTTTTAA 84391676 TAATTTTTAA 1 TAATTTTTAA 84391686 TAA-TTTTAA 1 TAATTTTTAA * * 84391695 TTTACTTTTAA 1 -TAATTTTTAA 84391706 T-ATTTTTAA 1 TAATTTTTAA 84391715 -AATTTT 1 TAATTTT 84391721 AAAATATTTA Statistics Matches: 39, Mismatches: 2, Indels: 8 0.80 0.04 0.16 Matches are distributed among these distances: 9 26 0.67 10 7 0.18 11 6 0.15 ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63 Consensus pattern (10 bp): TAATTTTTAA Found at i:84391690 original size:29 final size:27 Alignment explanation
Indices: 84391635--84391721 Score: 88 Period size: 25 Copynumber: 3.2 Consensus size: 27 84391625 ATATAATAAG * ** 84391635 TTTTATTTAATATTAATA--TAAAAAA 1 TTTTATTTAATTTTAATATTTTTAAAA * 84391660 TTTTATTTAATTTTTATAATTTTTAATAA 1 TTTTATTTAATTTTAAT-ATTTTTAA-AA * 84391689 TTTTAATTTACTTTTAATATTTTTAAAA 1 TTTT-ATTTAATTTTAATATTTTTAAAA 84391717 TTTTA 1 TTTTA 84391722 AAATATTTAT Statistics Matches: 51, Mismatches: 6, Indels: 8 0.78 0.09 0.12 Matches are distributed among these distances: 25 15 0.29 26 1 0.02 27 1 0.02 28 9 0.18 29 14 0.27 30 11 0.22 ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60 Consensus pattern (27 bp): TTTTATTTAATTTTAATATTTTTAAAA Found at i:84392671 original size:34 final size:34 Alignment explanation
Indices: 84392628--84392693 Score: 123 Period size: 34 Copynumber: 1.9 Consensus size: 34 84392618 GCGCCATATG 84392628 GGTGAAACATGTAAGATGTTCAATGATCAAAATA 1 GGTGAAACATGTAAGATGTTCAATGATCAAAATA * 84392662 GGTGAAACATGTAAGATGTTCAATGATTAAAA 1 GGTGAAACATGTAAGATGTTCAATGATCAAAA 84392694 GATGATGTTT Statistics Matches: 31, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 34 31 1.00 ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27 Consensus pattern (34 bp): GGTGAAACATGTAAGATGTTCAATGATCAAAATA Found at i:84407386 original size:43 final size:43 Alignment explanation
Indices: 84407304--84407387 Score: 114 Period size: 43 Copynumber: 2.0 Consensus size: 43 84407294 ATATATGTGT * * * * * 84407304 CATCCGAGCTCGTTGAGAGGTTCGAGTTCCTTATGGATGCGAG 1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATAGATGCGAG * 84407347 CATCCGAGCTCATTGAGTGGTCCGAGTTCATAATAGATGCG 1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATAGATGCG 84407388 GTACGTGTAA Statistics Matches: 35, Mismatches: 6, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 43 35 1.00 ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27 Consensus pattern (43 bp): CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATAGATGCGAG Found at i:84409360 original size:26 final size:26 Alignment explanation
Indices: 84409331--84409383 Score: 106 Period size: 26 Copynumber: 2.0 Consensus size: 26 84409321 GCAAATTTAA 84409331 CATGTTTTAAAATCCCCCCTACTTAG 1 CATGTTTTAAAATCCCCCCTACTTAG 84409357 CATGTTTTAAAATCCCCCCTACTTAG 1 CATGTTTTAAAATCCCCCCTACTTAG 84409383 C 1 C 84409384 CTATACGTGC Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 26 27 1.00 ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34 Consensus pattern (26 bp): CATGTTTTAAAATCCCCCCTACTTAG Found at i:84415692 original size:41 final size:41 Alignment explanation
Indices: 84415635--84415716 Score: 164 Period size: 41 Copynumber: 2.0 Consensus size: 41 84415625 AAGTAGCAGT 84415635 GTATCACCGGTGTCTCCTAAGCAATCAACAACACCACCTTC 1 GTATCACCGGTGTCTCCTAAGCAATCAACAACACCACCTTC 84415676 GTATCACCGGTGTCTCCTAAGCAATCAACAACACCACCTTC 1 GTATCACCGGTGTCTCCTAAGCAATCAACAACACCACCTTC 84415717 ACCTGTTAGC Statistics Matches: 41, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 41 41 1.00 ACGTcount: A:0.29, C:0.37, G:0.12, T:0.22 Consensus pattern (41 bp): GTATCACCGGTGTCTCCTAAGCAATCAACAACACCACCTTC Found at i:84416903 original size:201 final size:199 Alignment explanation
Indices: 84416490--84417117 Score: 678 Period size: 201 Copynumber: 3.2 Consensus size: 199 84416480 AAGTTTTGGA * * * * * * 84416490 TTTAATTTTTGAAATAATTTGGTACATTAACTTTTATAATGTCATTG-CTAGTCTAAATACTCCA 1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTC-A-CCTAAATACTTCA * * * ** * 84416554 TTCTGATTAAAATGTGGACGTGCATGTACCCAAAT--AT-ACA----ACTT-TTACTTCTTTGAG 64 TTCTGATTAAAATGTTGACGTACACGTGTCCAAATACATGACATTTTACTTCTT-CTTTTTTGAG * * * * * 84416611 ATTATATAATAATGGTCAAATTTT-AATTTTGGT-TCATAT-ATTATGCTCAAATATGGAATTTA 128 ATTACATAACAATGGTC-AATTTTCAATTTTGGTCTC-TATGA-TATGCTCAATTTTGAAATTTA 84416673 ATCTCTATAC 190 ATCTCTATAC ** * * 84416683 TTTACGTTTTGATATAATTTGGTACCTCAACTTTTATTATGTCATAGTCACACTAAATACTTCAT 1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCAC-CTAAATACTTCAT * * 84416748 TCTGATTAAAATGTTGACATACACGTGTCCAAATACATGACATTTTACTTCTTCTTTTTTTTAGA 65 TCTGATTAAAATGTTGACGTACACGTGTCCAAATACATGACATTTTACTTCTTC-TTTTTTGAGA 84416813 TTACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCT 129 TTACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCT * 84416878 CTATAT 194 CTATAC * ** 84416884 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGCCATAGTCATCCTAAATGA-TTTG 1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCA-CCTAAAT-ACTTCA * * * * 84416948 TTCTAATTAAAATGTTGATGTACACAG-GTCCAAATACACGACCTTTTA---CTTCTTTTTTGAG 64 TTCTGATTAAAATGTTGACGTACAC-GTGTCCAAATACATGACATTTTACTTCTTCTTTTTTGAG * * * * * 84417009 ACTACATATAACAATGGTCAAATTTCAAATTTGGTCCCCATGATATGCTCAATTTTGAAATTTAA 128 ATTAC--ATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAA * 84417074 TCTTTATAC 191 TCTCTATAC * 84417083 TTTAATTTTTGACATAATTTGGTACCTTAACTTTT 1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTT 84417118 TTCTTGTCAT Statistics Matches: 372, Mismatches: 44, Indels: 32 0.83 0.10 0.07 Matches are distributed among these distances: 193 81 0.22 194 1 0.00 195 2 0.01 196 3 0.01 197 12 0.03 198 4 0.01 199 95 0.26 200 11 0.03 201 157 0.42 202 6 0.02 ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43 Consensus pattern (199 bp): TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCACCTAAATACTTCATT CTGATTAAAATGTTGACGTACACGTGTCCAAATACATGACATTTTACTTCTTCTTTTTTGAGATT ACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCTCT ATAC Found at i:84421295 original size:46 final size:46 Alignment explanation
Indices: 84421245--84421417 Score: 187 Period size: 46 Copynumber: 3.8 Consensus size: 46 84421235 TGGTTGAGCA 84421245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG *** * * 84421291 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAAATGTAACTAG-GCAT- 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG * * 84421339 T-CG-A--CGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * 84421381 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 84421418 GCGGGTTACA Statistics Matches: 102, Mismatches: 15, Indels: 20 0.74 0.11 0.15 Matches are distributed among these distances: 40 1 0.01 41 3 0.03 42 1 0.01 43 6 0.06 44 20 0.20 46 58 0.57 47 6 0.06 48 2 0.02 49 4 0.04 50 1 0.01 ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG Found at i:84431805 original size:8 final size:8 Alignment explanation
Indices: 84431792--84431825 Score: 68 Period size: 8 Copynumber: 4.2 Consensus size: 8 84431782 GAGATTTGAT 84431792 TTCAAGAA 1 TTCAAGAA 84431800 TTCAAGAA 1 TTCAAGAA 84431808 TTCAAGAA 1 TTCAAGAA 84431816 TTCAAGAA 1 TTCAAGAA 84431824 TT 1 TT 84431826 ATCTAAGCGT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 26 1.00 ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29 Consensus pattern (8 bp): TTCAAGAA Found at i:84433146 original size:18 final size:18 Alignment explanation
Indices: 84433123--84433157 Score: 61 Period size: 18 Copynumber: 1.9 Consensus size: 18 84433113 ATATTTGAAA 84433123 TAATTTAATATAATATAT 1 TAATTTAATATAATATAT * 84433141 TAATTTAATTTAATATA 1 TAATTTAATATAATATA 84433158 AAACATTTTA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (18 bp): TAATTTAATATAATATAT Found at i:84433273 original size:26 final size:24 Alignment explanation
Indices: 84433219--84433342 Score: 110 Period size: 26 Copynumber: 4.9 Consensus size: 24 84433209 TTTAAGAATG * 84433219 TTATTAAATTATA-TAATATTACTT 1 TTATTAAATTATATTAATAATA-TT 84433243 TTATTAAATTATATTTAATAATATT 1 TTATTAAATTATA-TTAATAATATT * * 84433268 TATATTAAAATATGATTAA-ATTATTT 1 T-TATTAAATTAT-ATTAATAATA-TT 84433294 ATTATTAAATTATATTTAATAATAATT 1 -TTATTAAATTATA-TTAATAAT-ATT * 84433321 TTATTGAAATT-TAATAATAATA 1 TTATT-AAATTATATTAATAATA 84433343 ACAATAATCA Statistics Matches: 84, Mismatches: 6, Indels: 20 0.76 0.05 0.18 Matches are distributed among these distances: 24 14 0.17 25 14 0.17 26 44 0.52 27 11 0.13 28 1 0.01 ACGTcount: A:0.46, C:0.01, G:0.02, T:0.52 Consensus pattern (24 bp): TTATTAAATTATATTAATAATATT Found at i:84447240 original size:25 final size:23 Alignment explanation
Indices: 84447188--84447242 Score: 58 Period size: 25 Copynumber: 2.3 Consensus size: 23 84447178 TATAAATAGT 84447188 AATAGTGTTAGAAATATACTATA 1 AATAGTGTTAGAAATATACTATA * * 84447211 TATAGTGTTTGAAGTATATAC-ATAA 1 AATAGTGTTAGAA--ATATACTAT-A 84447236 AATAGTG 1 AATAGTG 84447243 AAAATATAAC Statistics Matches: 26, Mismatches: 3, Indels: 4 0.79 0.09 0.12 Matches are distributed among these distances: 23 11 0.42 24 2 0.08 25 13 0.50 ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36 Consensus pattern (23 bp): AATAGTGTTAGAAATATACTATA Found at i:84447362 original size:22 final size:24 Alignment explanation
Indices: 84447304--84447450 Score: 79 Period size: 25 Copynumber: 5.9 Consensus size: 24 84447294 ATAGATATAA * * 84447304 AAAAATATGTACATAATATAGTGT 1 AAAAATATATACATAATATAATGT * 84447328 AAAAAATACATACATAATATAAT-T 1 -AAAAATATATACATAATATAATGT * 84447352 -AAAATATATACATAAGATAACATGT 1 AAAAATATATACATAATAT-A-ATGT * 84447377 AGAAAAAAAATATATAAATAATATAGTAT-T 1 -----AAAAATATATACATAATATA--ATGT * * 84447407 AAAGATATATACATAAAAT-A-GT 1 AAAAATATATACATAATATAATGT * * 84447429 ATAATATATATACGTAATATAA 1 A-AAAATATATACATAATATAA 84447451 AATTTAGAAT Statistics Matches: 95, Mismatches: 14, Indels: 27 0.70 0.10 0.20 Matches are distributed among these distances: 22 19 0.20 23 16 0.17 24 4 0.04 25 36 0.38 30 2 0.02 31 18 0.19 ACGTcount: A:0.58, C:0.05, G:0.07, T:0.31 Consensus pattern (24 bp): AAAAATATATACATAATATAATGT Found at i:84447382 original size:27 final size:28 Alignment explanation
Indices: 84447352--84447423 Score: 67 Period size: 27 Copynumber: 2.6 Consensus size: 28 84447342 TAATATAATT 84447352 AAAATATATACATAAGATAACAT-GTA-G 1 AAAATATATACATAA-ATAACATAGTATG * * * * * 84447379 AAAAAAAATATATAAATAATATAGTATT 1 AAAATATATACATAAATAACATAGTATG 84447407 AAAGATATATACATAAA 1 AAA-ATATATACATAAA 84447424 ATAGTATAAT Statistics Matches: 34, Mismatches: 8, Indels: 4 0.74 0.17 0.09 Matches are distributed among these distances: 26 6 0.18 27 15 0.44 28 3 0.09 29 10 0.29 ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28 Consensus pattern (28 bp): AAAATATATACATAAATAACATAGTATG Found at i:84447384 original size:78 final size:79 Alignment explanation
Indices: 84447268--84447459 Score: 199 Period size: 78 Copynumber: 2.4 Consensus size: 79 84447258 ATGTTAAGAT * * * * * * 84447268 ATATATAATATATACATATGTATAAAATAGATA-TAAAAAAATATGTACATAATATAGTGTAAAA 1 ATATAAAATATATACATAAG-ATAAAAT-G-TAGAAAAAAAATATATAAATAATATAGTATAAAA * 84447332 AATACATACATAATATA 63 AATACATACATAAAATA * * * 84447349 AT-TAAAATATATACATAAGATAACATGTAGAAAAAAAATATATAAATAATATAGTATTAAAGAT 1 ATATAAAATATATACATAAGATAAAATGTAGAAAAAAAATATATAAATAATATAGTATAAAAAAT * 84447413 ATATACATAAAATA 66 ACATACATAAAATA * * * * * 84447427 GTATAATATATATACGTAATATAAAATTTAGAA 1 ATATAAAATATATACATAAGATAAAATGTAGAA 84447460 TATACCTAAT Statistics Matches: 92, Mismatches: 17, Indels: 6 0.80 0.15 0.05 Matches are distributed among these distances: 77 2 0.02 78 42 0.46 79 31 0.34 80 15 0.16 81 2 0.02 ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32 Consensus pattern (79 bp): ATATAAAATATATACATAAGATAAAATGTAGAAAAAAAATATATAAATAATATAGTATAAAAAAT ACATACATAAAATA Found at i:84447414 original size:25 final size:24 Alignment explanation
Indices: 84447386--84447517 Score: 101 Period size: 23 Copynumber: 5.6 Consensus size: 24 84447376 TAGAAAAAAA * * 84447386 ATATATAAATAATATAGTATTAAAG 1 ATATATACATAATATAATATT-AAG * * * 84447411 ATATATACATAAAATAGTA-TAAT 1 ATATATACATAATATAATATTAAG * * * 84447434 ATATATACGTAATATAAAATTTAG 1 ATATATACATAATATAATATTAAG * * * 84447458 A-ATATACCTAATATATTA-AAAG 1 ATATATACATAATATAATATTAAG * 84447480 AATATATATATAATATAATATTAAG 1 -ATATATACATAATATAATATTAAG * 84447505 AAATATA-ATAATA 1 ATATATACATAATA 84447518 ACAAAAAAAG Statistics Matches: 84, Mismatches: 19, Indels: 10 0.74 0.17 0.09 Matches are distributed among these distances: 22 2 0.02 23 38 0.45 24 24 0.29 25 20 0.24 ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36 Consensus pattern (24 bp): ATATATACATAATATAATATTAAG Found at i:84447493 original size:24 final size:23 Alignment explanation
Indices: 84447466--84447517 Score: 61 Period size: 24 Copynumber: 2.2 Consensus size: 23 84447456 AGAATATACC * 84447466 TAATATATTA-AAAGAATATATATA 1 TAATATAATATAAAGAA-ATATA-A * 84447490 TAATATAATATTAAGAAATATAA 1 TAATATAATATAAAGAAATATAA 84447513 TAATA 1 TAATA 84447518 ACAAAAAAAG Statistics Matches: 25, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 23 6 0.24 24 14 0.56 25 5 0.20 ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37 Consensus pattern (23 bp): TAATATAATATAAAGAAATATAA Found at i:84447838 original size:16 final size:16 Alignment explanation
Indices: 84447800--84447838 Score: 51 Period size: 16 Copynumber: 2.4 Consensus size: 16 84447790 TCTCCAAAAA * 84447800 AAAAACTAGCCTCTCC 1 AAAAACTAGCCTCTAC * 84447816 AAAAACTAGCCTTTAC 1 AAAAACTAGCCTCTAC * 84447832 AATAACT 1 AAAAACT 84447839 CTTCTCCTTG Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 16 20 1.00 ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23 Consensus pattern (16 bp): AAAAACTAGCCTCTAC Found at i:84453025 original size:101 final size:101 Alignment explanation
Indices: 84452850--84453044 Score: 266 Period size: 101 Copynumber: 1.9 Consensus size: 101 84452840 TGGATGTCAC * * * 84452850 GACACCAATGCCTTTGCCATCAACCGAGGAGTTGGACTTCACCAAATTGCATATTTGAGTAGACT 1 GACACCAATGCCTTTGCCATCAACCAAGGAGTTGGACTTCACCAAATTGCATATCTAAGTAGACT * ** 84452915 AGCTCTGAAGTTGCCACACCAAGGTGTTGATGTCGT 66 AGATCTGAAGTCACCACACCAAGGTGTTGATGTCGT * * * 84452951 GACACCAATGCCTTTGCCATCAATCAAGGAGTTGGACTTTACCAAATTGTATATCTAAGT-GAAC 1 GACACCAATGCCTTTGCCATCAACCAAGGAGTTGGACTTCACCAAATTGCATATCTAAGTAG-AC * * * 84453015 TATATTTGAAGTCACCACACTAAGGTGTTG 65 TAGATCTGAAGTCACCACACCAAGGTGTTG 84453045 GTGCCGCGAC Statistics Matches: 81, Mismatches: 12, Indels: 2 0.85 0.13 0.02 Matches are distributed among these distances: 100 1 0.01 101 80 0.99 ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28 Consensus pattern (101 bp): GACACCAATGCCTTTGCCATCAACCAAGGAGTTGGACTTCACCAAATTGCATATCTAAGTAGACT AGATCTGAAGTCACCACACCAAGGTGTTGATGTCGT Found at i:84454613 original size:19 final size:19 Alignment explanation
Indices: 84454542--84454615 Score: 62 Period size: 19 Copynumber: 3.8 Consensus size: 19 84454532 TGTCACCCTA * 84454542 TATTTTGAAAT-TAAAAAAA 1 TATTTT-AAATATAAAAAAT * * 84454561 TATGTTAAATGTAAAAAAT 1 TATTTTAAATATAAAAAAT ** 84454580 GTGATTTTTTA-ATAAAAAAT 1 -T-ATTTTAAATATAAAAAAT 84454600 TATTTTAAATATAAAA 1 TATTTTAAATATAAAA 84454616 TGTGAAATTG Statistics Matches: 43, Mismatches: 8, Indels: 8 0.73 0.14 0.14 Matches are distributed among these distances: 18 10 0.23 19 19 0.44 20 9 0.21 21 5 0.12 ACGTcount: A:0.53, C:0.00, G:0.07, T:0.41 Consensus pattern (19 bp): TATTTTAAATATAAAAAAT Found at i:84457586 original size:15 final size:15 Alignment explanation
Indices: 84457568--84457603 Score: 56 Period size: 15 Copynumber: 2.5 Consensus size: 15 84457558 TTGATTTCTT * 84457568 TTAATTGTTATTTAA 1 TTAATTGTAATTTAA 84457583 TTAATTGTAATTTAA 1 TTAATTGTAATTTAA 84457598 -TAATTG 1 TTAATTG 84457604 AAGTTTGAAG Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 14 6 0.30 15 14 0.70 ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56 Consensus pattern (15 bp): TTAATTGTAATTTAA Found at i:84457753 original size:13 final size:13 Alignment explanation
Indices: 84457735--84457766 Score: 55 Period size: 13 Copynumber: 2.5 Consensus size: 13 84457725 ATAAATTTAT 84457735 TTAAATTAATTAA 1 TTAAATTAATTAA * 84457748 TTAAATTAATTGA 1 TTAAATTAATTAA 84457761 TTAAAT 1 TTAAAT 84457767 AAATAAAAAT Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 13 18 1.00 ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47 Consensus pattern (13 bp): TTAAATTAATTAA Found at i:84457815 original size:17 final size:18 Alignment explanation
Indices: 84457793--84457829 Score: 58 Period size: 18 Copynumber: 2.1 Consensus size: 18 84457783 AATTGAAAAT * 84457793 AATTATTAG-GTTGGATA 1 AATTATAAGTGTTGGATA 84457810 AATTATAAGTGTTGGATA 1 AATTATAAGTGTTGGATA 84457828 AA 1 AA 84457830 AATTTGAGAA Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 17 8 0.44 18 10 0.56 ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38 Consensus pattern (18 bp): AATTATAAGTGTTGGATA Found at i:84474683 original size:14 final size:15 Alignment explanation
Indices: 84474664--84474693 Score: 53 Period size: 15 Copynumber: 2.1 Consensus size: 15 84474654 TATTTTTATC 84474664 AAAATAA-TACAAAA 1 AAAATAATTACAAAA 84474678 AAAATAATTACAAAA 1 AAAATAATTACAAAA 84474693 A 1 A 84474694 TGAGATAAAT Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 14 7 0.47 15 8 0.53 ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17 Consensus pattern (15 bp): AAAATAATTACAAAA Found at i:84474761 original size:23 final size:23 Alignment explanation
Indices: 84474734--84474778 Score: 90 Period size: 23 Copynumber: 2.0 Consensus size: 23 84474724 TTTTTTACAA 84474734 TATTATTGGGTGCTGCCAATGTT 1 TATTATTGGGTGCTGCCAATGTT 84474757 TATTATTGGGTGCTGCCAATGT 1 TATTATTGGGTGCTGCCAATGT 84474779 GTCACACAAC Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 23 22 1.00 ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42 Consensus pattern (23 bp): TATTATTGGGTGCTGCCAATGTT Found at i:84475387 original size:24 final size:24 Alignment explanation
Indices: 84475360--84475410 Score: 59 Period size: 24 Copynumber: 2.1 Consensus size: 24 84475350 AGATTTAATG 84475360 TTTAAGATTATAT-TATTATATATA 1 TTTAAGATTATATGT-TTATATATA *** 84475384 TTTATTTTTATATGTTTATATATA 1 TTTAAGATTATATGTTTATATATA 84475408 TTT 1 TTT 84475411 TTAATAAAGA Statistics Matches: 23, Mismatches: 3, Indels: 2 0.82 0.11 0.07 Matches are distributed among these distances: 24 22 0.96 25 1 0.04 ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63 Consensus pattern (24 bp): TTTAAGATTATATGTTTATATATA Found at i:84487358 original size:17 final size:16 Alignment explanation
Indices: 84487336--84487367 Score: 55 Period size: 17 Copynumber: 1.9 Consensus size: 16 84487326 TAGCCCTTCC 84487336 TTATTAATATTATTATG 1 TTATTAAT-TTATTATG 84487353 TTATTAATTTATTAT 1 TTATTAATTTATTAT 84487368 TTAGCATTTA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 7 0.47 17 8 0.53 ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62 Consensus pattern (16 bp): TTATTAATTTATTATG Found at i:84487551 original size:3 final size:3 Alignment explanation
Indices: 84487545--84487576 Score: 55 Period size: 3 Copynumber: 10.7 Consensus size: 3 84487535 TTTATTATTA * 84487545 TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG TT 1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT 84487577 TATTGATGAT Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 3 27 1.00 ACGTcount: A:0.03, C:0.00, G:0.28, T:0.69 Consensus pattern (3 bp): TTG Found at i:84487562 original size:15 final size:15 Alignment explanation
Indices: 84487542--84487573 Score: 64 Period size: 15 Copynumber: 2.1 Consensus size: 15 84487532 TTATTTATTA 84487542 TTATTGTTGTTGTTG 1 TTATTGTTGTTGTTG 84487557 TTATTGTTGTTGTTG 1 TTATTGTTGTTGTTG 84487572 TT 1 TT 84487574 GTTTATTGAT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 17 1.00 ACGTcount: A:0.06, C:0.00, G:0.25, T:0.69 Consensus pattern (15 bp): TTATTGTTGTTGTTG Found at i:84487606 original size:12 final size:12 Alignment explanation
Indices: 84487585--84487626 Score: 59 Period size: 12 Copynumber: 3.5 Consensus size: 12 84487575 TTTATTGATG * 84487585 ATTATTATTTAT 1 ATTATCATTTAT 84487597 ATTATCATTTAT 1 ATTATCATTTAT 84487609 ATTATCA-TTATT 1 ATTATCATTTA-T 84487621 ATTATC 1 ATTATC 84487627 CATGCATATT Statistics Matches: 28, Mismatches: 1, Indels: 2 0.90 0.03 0.06 Matches are distributed among these distances: 11 3 0.11 12 25 0.89 ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60 Consensus pattern (12 bp): ATTATCATTTAT Found at i:84499218 original size:44 final size:44 Alignment explanation
Indices: 84498976--84499223 Score: 145 Period size: 44 Copynumber: 5.7 Consensus size: 44 84498966 AAAGCCACAG * * * * * * * * 84498976 ATCTTATTTCCCTAAAGTTACAATGGAGTAGATTGAAGATAACAA 1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCT-ATAA * * 84499021 ATCTTATCT-CTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAA 1 ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTATAA * * * * * * 84499065 ACCTTATCT-TTCTAAAGTTGCAGTAGAGCAGGTTGAAGTTATAA 1 ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTATAA * * * * * * 84499109 GTCTTATCTCCCTGAAGTCT-TAGTGGAGTAGACTGAAGAC-AGCAA 1 ATCTTATCTCCTTGAAGT-TGCAGTGGAGCAGATTGAAG-CTA-TAA * * * * 84499154 ATCTCATCTCCCTGAA-----AGTGGAGCAGATTGAAGTTGTAA 1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATAA 84499193 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAG 1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAG 84499224 GTCGAAGATA Statistics Matches: 155, Mismatches: 37, Indels: 23 0.72 0.17 0.11 Matches are distributed among these distances: 39 16 0.10 40 15 0.10 44 78 0.50 45 46 0.30 ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31 Consensus pattern (44 bp): ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATAA Found at i:84499608 original size:44 final size:44 Alignment explanation
Indices: 84499499--84499630 Score: 140 Period size: 44 Copynumber: 3.0 Consensus size: 44 84499489 ACAAGTTGCG * * * * * 84499499 AACCTTATCTCCCTGAAGTTGTAGTGGAACAGACTGAAGATAGCA 1 AACCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCTA-CA * * * 84499544 AATCTTATC-TCTCTGAAGTTGTAGTAGAGCAGATTAAAGCTACA 1 AACCTTATCTTCT-TGAAGTTGTAGTGGAGCAGATTGAAGCTACA * * * 84499588 AACCTTATCTTCTTAAAGTTGTAATGGAGCATATTGAAGCTAC 1 AACCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCTAC 84499631 TTGAAGAGAA Statistics Matches: 71, Mismatches: 14, Indels: 5 0.79 0.16 0.06 Matches are distributed among these distances: 44 36 0.51 45 35 0.49 ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30 Consensus pattern (44 bp): AACCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCTACA Found at i:84500972 original size:17 final size:16 Alignment explanation
Indices: 84500950--84500981 Score: 55 Period size: 17 Copynumber: 1.9 Consensus size: 16 84500940 TAGCCCTTCC 84500950 TTATTAATATTATTATG 1 TTATTAAT-TTATTATG 84500967 TTATTAATTTATTAT 1 TTATTAATTTATTAT 84500982 TTAGCATTTA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 7 0.47 17 8 0.53 ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62 Consensus pattern (16 bp): TTATTAATTTATTATG Found at i:84501415 original size:36 final size:36 Alignment explanation
Indices: 84501239--84501907 Score: 371 Period size: 35 Copynumber: 18.3 Consensus size: 36 84501229 ATCAATAACG * * * 84501239 ACCTTGAAAAGGGTTGGGATAGACCTAGTC-AAGACCA 1 ACCTT-AAAAAGGTTGGGATAGACCTTGTCTAAG-GCA ** * * * * * * 84501276 ACCTTTTCAAATGTTGTGAGAAACCTTG-CTACGGTA 1 ACC-TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * ** ** 84501312 ACATTAAAAAGGTTGCTATAGTTCTTGTCTAAGGCA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * 84501348 ACTTTTAAAAACTGTTGGGATAGATCC--GTCTAAGGCA 1 AC-CTTAAAAA-GGTTGGGATAGA-CCTTGTCTAAGGCA * * 84501385 ACCTTAAAAAGGTTGGCATAGACCTTGTCTAAGACA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * 84501421 ACTTATAAAAAAAGGTTGGGATAGAGCC--GTCTAAGGCA 1 ACCT-T--AAAAAGGTTGGGATAGA-CCTTGTCTAAGGCA * 84501459 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGACA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * 84501495 ACTTTTAAAAAAAAAGGTTGGGATAGACC-TATCTAAGGCA 1 AC-CTT----AAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * 84501535 ACCTTAAATAGGTTGGGATAGACCATGTCTAAGGCA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA ** ** 84501571 ACCTTTAAAAAATATTGGGATAGACC-CATCTAAGGCA 1 ACC-TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * * * 84501608 ACATTAAAATGGTTGGGATGGACCTTGTCTAAGGAA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * * * * 84501644 ACTTTTAAAAAAGGTTGGCATAGGTCCAT-T-TAAAGCA 1 AC-CTT-AAAAAGGTTGGGATA-GACCTTGTCTAAGGCA ** * ** * * 84501681 ACCTTGGAAAGGTTGGGATAAATATTGTCTAATGAA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * ** * 84501717 ACCTTTAAAAAAGGTTGCGATAAACC-CATCTAAGGTA 1 ACC-TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * * * 84501754 ACCTTAAAAAGGTTGAGATAAATCTCGTCTAAGGCA 1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA * * * * * 84501790 ACTTTTAGAAAAGGTTGGTATTGACC-TATCTAAGACA 1 AC-CTTA-AAAAGGTTGGGATAGACCTTGTCTAAGGCA * ** 84501827 ACGTTAAAAATTTTGGGATAGACCTAT-T-TACA-GCA 1 ACCTTAAAAAGGTTGGGATAGACCT-TGTCTA-AGGCA * * * * * 84501862 ACATTAAAAAAGGTTAGGATAGACCTTTTCTAATGTA 1 ACCTT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA 84501899 A-CTTAAAAA 1 ACCTTAAAAA 84501908 AAGTTGGGTT Statistics Matches: 482, Mismatches: 110, Indels: 82 0.72 0.16 0.12 Matches are distributed among these distances: 34 5 0.01 35 133 0.28 36 116 0.24 37 95 0.20 38 78 0.16 39 23 0.05 40 13 0.03 41 19 0.04 ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27 Consensus pattern (36 bp): ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA Found at i:84501655 original size:73 final size:73 Alignment explanation
Indices: 84501315--84501851 Score: 547 Period size: 73 Copynumber: 7.3 Consensus size: 73 84501305 TACGGTAACA ** ** * ** * * 84501315 TTAAAAAGGTTGCTATAGTTCTTGTCTAAGGCAACTTTTAAAAACTGTTGGGATAGATCCGTCTA 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGGATAGACCCATCTA 84501380 AGGCAACC 66 AGGCAACC * * * * 84501388 TTAAAAAGGTTGGCATAGACCTTGTCTAA-GACAACTTATAAAAAAAGGTTGGGATAGAGCCGTC 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGA-AACTT-TTAAAAAAGGTTGGGATAGACCCATC 84501452 TAAGGCAACC 64 TAAGGCAACC * 84501462 TTAAAAAGGTTGGGATAGACCTTGTCTAA-GACAACTTTTAAAAAAAAAGGTTGGGATAGACCTA 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGA-AACTTTT---AAAAAAGGTTGGGATAGACCCA 84501526 TCTAAGGCAACC 62 TCTAAGGCAACC * * * * ** 84501538 TTAAATAGGTTGGGATAGACCATGTCTAAGGCAACCTTTAAAAAATATTGGGATAGACCCATCTA 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGGATAGACCCATCTA * 84501603 AGGCAACA 66 AGGCAACC * * * ** * 84501611 TTAAAATGGTTGGGATGGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGCATAGGTCCATTTA 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGGATAGACCCATCTA * 84501676 AAGCAACC 66 AGGCAACC ** * ** * * * * 84501684 TTGGAAAGGTTGGGATAAATATTGTCTAATGAAACCTTTAAAAAAGGTTGCGATAAACCCATCTA 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGGATAGACCCATCTA * 84501749 AGGTAACC 66 AGGCAACC * * * * * * * * * 84501757 TTAAAAAGGTTGAGATAAATCTCGTCTAAGGCAACTTTTAGAAAAGGTTGGTATTGACCTATCTA 1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGGATAGACCCATCTA * * 84501822 AGACAACG 66 AGGCAACC ** 84501830 TTAAAAATTTTGGGATAGACCT 1 TTAAAAAGGTTGGGATAGACCT 84501852 ATTTACAGCA Statistics Matches: 383, Mismatches: 75, Indels: 12 0.81 0.16 0.03 Matches are distributed among these distances: 72 1 0.00 73 249 0.65 74 68 0.18 76 64 0.17 77 1 0.00 ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27 Consensus pattern (73 bp): TTAAAAAGGTTGGGATAGACCTTGTCTAAGGAAACTTTTAAAAAAGGTTGGGATAGACCCATCTA AGGCAACC Found at i:84502269 original size:45 final size:45 Alignment explanation
Indices: 84502205--84502291 Score: 129 Period size: 45 Copynumber: 1.9 Consensus size: 45 84502195 AACACGTTGC * * 84502205 AAACATGTTGTCAACTTGATTCCCATGATATCAAAAAATTATACA 1 AAACATGTTGTCAACTTGATTCCCATGACACCAAAAAATTATACA * * * 84502250 AAACATTTTGTCGACTTGATTCGCATGACACCAAAAAATTAT 1 AAACATGTTGTCAACTTGATTCCCATGACACCAAAAAATTAT 84502292 GAGACAACTA Statistics Matches: 37, Mismatches: 5, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 45 37 1.00 ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31 Consensus pattern (45 bp): AAACATGTTGTCAACTTGATTCCCATGACACCAAAAAATTATACA Found at i:84505576 original size:18 final size:18 Alignment explanation
Indices: 84505553--84505595 Score: 59 Period size: 18 Copynumber: 2.3 Consensus size: 18 84505543 ACTCATAATT * 84505553 AGAGAAAGAACAAGTACC 1 AGAGAAAGAACAAATACC * 84505571 AGAGAAAGAATAAATACC 1 AGAGAAAGAACAAATACC 84505589 AGCAGAA 1 AG-AGAA 84505596 GGTAATAAAC Statistics Matches: 22, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 18 18 0.82 19 4 0.18 ACGTcount: A:0.58, C:0.14, G:0.21, T:0.07 Consensus pattern (18 bp): AGAGAAAGAACAAATACC Found at i:84514818 original size:35 final size:37 Alignment explanation
Indices: 84514755--84514860 Score: 135 Period size: 35 Copynumber: 2.8 Consensus size: 37 84514745 TCAATGATAT * 84514755 GCAATCTTAGATGTGATATGCAATCTTAGATATCATA 1 GCAATCTTAGATATGATATGCAATCTTAGATATCATA * 84514792 -CAATCTTAGATATGAT-TGCAATCTTAGATATGATA 1 GCAATCTTAGATATGATATGCAATCTTAGATATCATA * 84514827 TGCAATCTTAGAAGATATGATATGAAATCTTAGA 1 -GCAATCTT---AGATATGATATGCAATCTTAGA 84514861 AGATATGATT Statistics Matches: 60, Mismatches: 3, Indels: 8 0.85 0.04 0.11 Matches are distributed among these distances: 35 18 0.30 36 15 0.25 37 7 0.12 40 9 0.15 41 11 0.18 ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35 Consensus pattern (37 bp): GCAATCTTAGATATGATATGCAATCTTAGATATCATA Found at i:84514845 original size:22 final size:19 Alignment explanation
Indices: 84514748--84514860 Score: 151 Period size: 19 Copynumber: 5.9 Consensus size: 19 84514738 ATAATCTTCA 84514748 ATGATATGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT * 84514767 GTGATATGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT * 84514786 ATCATA--CAATCTTAGAT 1 ATGATATGCAATCTTAGAT 84514803 ATGAT-TGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT 84514821 ATGATATGCAATCTTAGAAGAT 1 ATGATATGCAATCTT---AGAT * 84514843 ATGATATGAAATCTTAGA 1 ATGATATGCAATCTTAGA 84514861 AGATATGATT Statistics Matches: 83, Mismatches: 5, Indels: 12 0.83 0.05 0.12 Matches are distributed among these distances: 17 15 0.18 18 16 0.19 19 34 0.41 22 18 0.22 ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35 Consensus pattern (19 bp): ATGATATGCAATCTTAGAT Found at i:84514861 original size:22 final size:22 Alignment explanation
Indices: 84514817--84514883 Score: 98 Period size: 22 Copynumber: 3.0 Consensus size: 22 84514807 TTGCAATCTT * 84514817 AGATATGATATGCAATCTTAGA 1 AGATATGATATGAAATCTTAGA 84514839 AGATATGATATGAAATCTTAGA 1 AGATATGATATGAAATCTTAGA * * 84514861 AGATATGATTTTGTAATCTTAGA 1 AGATATGA-TATGAAATCTTAGA 84514884 CATTTAATTT Statistics Matches: 41, Mismatches: 3, Indels: 1 0.91 0.07 0.02 Matches are distributed among these distances: 22 29 0.71 23 12 0.29 ACGTcount: A:0.40, C:0.06, G:0.18, T:0.36 Consensus pattern (22 bp): AGATATGATATGAAATCTTAGA Found at i:84520058 original size:18 final size:18 Alignment explanation
Indices: 84520034--84520070 Score: 65 Period size: 18 Copynumber: 2.0 Consensus size: 18 84520024 TCTATTTCAA 84520034 AAAAAAAAGAGAAAAAAAT 1 AAAAAAAA-AGAAAAAAAT 84520053 AAAAAAAAAGAAAAAAAT 1 AAAAAAAAAGAAAAAAAT 84520071 TGAGAGGCCA Statistics Matches: 18, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 18 10 0.56 19 8 0.44 ACGTcount: A:0.86, C:0.00, G:0.08, T:0.05 Consensus pattern (18 bp): AAAAAAAAAGAAAAAAAT Found at i:84521218 original size:44 final size:45 Alignment explanation
Indices: 84521160--84521596 Score: 297 Period size: 44 Copynumber: 9.9 Consensus size: 45 84521150 AAATCTAAGA * * 84521160 TGATTTAGCGTCTCTGTATT-GGTAGAGAGCAGATCGAAGATGAC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGATGAC ** 84521204 TGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACAT-AGC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAG--ATGA-C * * * * * 84521251 TGATTTGGCTTTCATATGT-TTAC-GTTGA-AGCAAATC-TA-A-GA- 1 TGATTTGGC-ATC-TCTGTATT-CGGTAGAGAGCAGATCGAAGATGAC * * * 84521292 TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAGGATAAC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGATGAC ** * * 84521336 AAATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCAAAGATGAC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGATGAC * * 84521380 AGATTTGGCATCTCTGTATTCGGTGGAGAGCAGATCGAAGACAT-AGC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAG--ATGA-C * * ** * * 84521427 TGATTTGGCTTCCACGTGT-TTATGTTGA-AGCA-AGTC-TA-A-GA- 1 TGATTTGGCAT-CTC-TGTATTCGGTAGAGAGCAGA-TCGAAGATGAC * * * 84521468 TGATTTGGCATCTCTATATT-GGCAGAGAGTAGATCGAAGAT-AGC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGATGA-C * * * * * 84521512 AGATTTGACATCTTTGTATT-GGTAGAGAGCAGATCAAACATGAC 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGATGAC * * 84521556 AGATTTGGCATCTCTGTATTCGGTGGAGAGCAGATCGAAGA 1 TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGA 84521597 CATAGCTGAT Statistics Matches: 305, Mismatches: 55, Indels: 65 0.72 0.13 0.15 Matches are distributed among these distances: 39 12 0.04 40 20 0.07 41 21 0.07 42 3 0.01 43 5 0.02 44 128 0.42 45 51 0.17 46 5 0.02 47 37 0.12 48 15 0.05 49 8 0.03 ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29 Consensus pattern (45 bp): TGATTTGGCATCTCTGTATTCGGTAGAGAGCAGATCGAAGATGAC Found at i:84521286 original size:132 final size:130 Alignment explanation
Indices: 84521013--84521375 Score: 487 Period size: 132 Copynumber: 2.8 Consensus size: 130 84521003 GTATTTACCC * * * * * * 84521013 TGAAGCAGATCCAAAATGATTTGGCGTCTTTGTATT-GTCAGGGAGCAAATCGAAGATACCAGAT 1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGT-AGAGAGCAGATCGAAGATA-CAGAT * * 84521077 TTGGCGTCTCTGTATTGGCAGG-GAGCAGATCGAAGACATAGTTGATTTGGCTTTCACATGTTTA 64 TTGGCATCTCTGTATTGGC-GGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACATGTTTA * 84521141 TGT 128 CGT * * * 84521144 TGAAGAAAATCTAAGATGATTTAGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGATGACTGATT 1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGAT-ACAGATT * 84521209 TGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATATGTTTAC 65 TGGCATCTCTGTATT-GGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACATGTTTAC 84521274 GT 129 GT * * * * 84521276 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAGGATAACAAATT 1 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGAT-ACAGATT * * 84521341 TGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGA 65 TGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGA 84521376 TGACAGATTT Statistics Matches: 205, Mismatches: 23, Indels: 8 0.87 0.10 0.03 Matches are distributed among these distances: 131 85 0.41 132 120 0.59 ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29 Consensus pattern (130 bp): TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGATACAGATTT GGCATCTCTGTATTGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGT Found at i:84521352 original size:176 final size:176 Alignment explanation
Indices: 84521161--84521902 Score: 998 Period size: 176 Copynumber: 4.2 Consensus size: 176 84521151 AATCTAAGAT * * * * 84521161 GATTTAGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGATGACTGATTTGGCATCTCTGTATTCG 1 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG ** 84521226 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATATGTTTACGTTGAAGCAAATCTAAG 66 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG * 84521291 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAGGATAACA 131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * 84521337 AATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG 1 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG * * * * 84521402 GTGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTATGTTGAAGCAAGTCTAAG 66 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG * * * 84521467 ATGATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAGATAGCA 131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA * * * 84521513 GATTTGACATCTTTGTATTGGTAGAGAGCAGATCAAACATGACAGATTTGGCATCTCTGTATTCG 1 GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG * 84521578 GTGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG 66 GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG * * * * 84521643 ATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATC-AAGGACATAGCT 131 ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA-G--ATAACA * * * * * * * * * 84521691 GATTTGG-TTTTCATGTGTTTACGTTGA-AGTAAATCTAAGAT----GATTTGGCGTCTCTGTAT 1 GATTTGGCATCTC-TGT-ATT-GGTAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTAT 84521750 T-GGCAGG-GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATC 63 TCGGC-GGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATC * * 84521813 TAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACA 127 TAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA ** * * 84521863 GATTTGGCATCTCCATATTCGATAGAGAGCAGATCGAAGA 1 GATTTGGCATCTCTGTATT-GGTAGAGAGCAGATCAAAGA 84521903 CATAGCAGAT Statistics Matches: 498, Mismatches: 58, Indels: 24 0.86 0.10 0.04 Matches are distributed among these distances: 171 5 0.01 172 22 0.04 173 3 0.01 174 97 0.19 175 24 0.05 176 315 0.63 177 2 0.00 178 14 0.03 179 12 0.02 180 4 0.01 ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30 Consensus pattern (176 bp): GATTTGGCATCTCTGTATTGGTAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCG GCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAG ATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA Found at i:84521506 original size:87 final size:87 Alignment explanation
Indices: 84521204--84521857 Score: 709 Period size: 87 Copynumber: 7.5 Consensus size: 87 84521194 CGAAGATGAC * ** 84521204 TGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATATG 1 TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTG 84521269 TTTACGTTGAAGCAAATCTAAGA 65 TTTACGTTGAAGCAAATCTAAGA * * ** * * 84521292 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCG-AG-GATAACAAATTTGGC-ATCTC-TGT 1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT * ** * * 84521353 ATT-GGCAGAGAGCAGATCAAAGA 66 -TTACGTTGA-AGCAAATCTAAGA ** * 84521376 TGACAGATTTGGCATCTCTGTATTCGGTGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCA 1 T----GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCA * * 84521441 CGTGTTTATGTTGAAGCAAGTCTAAGA 61 CGTGTTTACGTTGAAGCAAATCTAAGA * * * * * ** 84521468 TGATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAG--ATAGCAGATTTGAC-ATC-TTTGT 1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT * * * * 84521529 ATT-GGTAGAGAGCAGATCAAACATGA 66 -TTACGTTGA-AGCAAATC-TA-A-GA * ** 84521555 CAGATTTGGCATCTCTGTATTCGGTGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGT 1 -TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGT 84521620 GTTTACGTTGAAGCAAATCTAAGA 64 GTTTACGTTGAAGCAAATCTAAGA * * * * 84521644 TGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATC-AAGGACATAGCTGATTTGGTTTTCATGTG 1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA-GACATAGCTGATTTGGCTTTCACGTG * 84521708 TTTACGTTGAAGTAAATCTAAGA 65 TTTACGTTGAAGCAAATCTAAGA * * 84521731 TGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT 1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT 84521796 TTACGTTGAAGCAAATCTAAGA 66 TTACGTTGAAGCAAATCTAAGA * * 84521818 TGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGA 1 TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA 84521858 TAACAGATTT Statistics Matches: 470, Mismatches: 70, Indels: 53 0.79 0.12 0.09 Matches are distributed among these distances: 83 13 0.03 84 25 0.05 85 24 0.05 86 5 0.01 87 210 0.45 88 95 0.20 89 32 0.07 90 3 0.01 91 24 0.05 92 26 0.06 93 13 0.03 ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31 Consensus pattern (87 bp): TGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT TTACGTTGAAGCAAATCTAAGA Found at i:84522018 original size:89 final size:87 Alignment explanation
Indices: 84521889--84522050 Score: 209 Period size: 89 Copynumber: 1.8 Consensus size: 87 84521879 ATTCGATAGA * * 84521889 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACATCGAAGTAGATCCAAGATG 1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACAC-T-GAAGCAGATCCAAGATG 84521954 ATTTGGCATCCTTGCGTTTACAAG 64 ATTTGGCATCCTTGCGTTTACAAG * ** * * * * 84521978 GAGCAGATCGAAGACATAGCAGATTTGGCTTTC-ACGTGTTTACGCTGAAGCAGATCTAAGATGA 1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTACACTGAAGCAGATCCAAGATGA 84522042 TTTGGCATC 65 TTTGGCATC 84522051 TCTGTACTGT Statistics Matches: 63, Mismatches: 9, Indels: 4 0.83 0.12 0.05 Matches are distributed among these distances: 87 25 0.40 88 2 0.03 89 36 0.57 ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27 Consensus pattern (87 bp): GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACACTGAAGCAGATCCAAGATGAT TTGGCATCCTTGCGTTTACAAG Found at i:84522212 original size:78 final size:78 Alignment explanation
Indices: 84522083--84522377 Score: 466 Period size: 78 Copynumber: 3.8 Consensus size: 78 84522073 CGAAGAAACA ** * * ** * 84522083 GATTTGGCATCTCCATATTCGATGGAAAGCATATCGAAGACATAGCAGATCTGACCTTCATTGAA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA 84522148 GCAGATCCAAGAT 66 GCAGATCCAAGAT * 84522161 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA 84522226 GCAGATCCAAGAT 66 GCAGATCCAAGAT * * 84522239 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA 84522303 AGCAGATCCAAGAT 65 AGCAGATCCAAGAT * * 84522317 GATTTGACATCTCTGTATTAGACGAGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT 84522378 GTGTTTACAT Statistics Matches: 200, Mismatches: 15, Indels: 4 0.91 0.07 0.02 Matches are distributed among these distances: 77 1 0.00 78 198 0.99 79 1 0.00 ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25 Consensus pattern (78 bp): GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA GCAGATCCAAGAT Found at i:84522442 original size:45 final size:45 Alignment explanation
Indices: 84522317--84522590 Score: 223 Period size: 45 Copynumber: 6.1 Consensus size: 45 84522307 GATCCAAGAT * * * 84522317 GATTTGACATCTCTGTATTAGACGAGGAGCAGATCGAAGACATAGCA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA * * * * * * * * * 84522364 GATCTGACCT-TCATGTGTTTACATC--GAAGCAAATCCAAGATGACA 1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA * * * * 84522409 GATTTGGCATCTCTATATTAGACGGGGAGCAAATCGGATATAACA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA * * * * ** 84522454 GATTTGACATCTCTGTATTATACGGGAAGCAGATTGAAGA-AGTA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA * 84522498 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA * * * * * 84522543 AATTTGGCGTCTATGTATTAGACGGGGAGCAGATCAAAGATAGCA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA 84522588 GAT 1 GAT 84522591 ATTGCCTTCC Statistics Matches: 178, Mismatches: 42, Indels: 16 0.75 0.18 0.07 Matches are distributed among these distances: 43 1 0.01 44 41 0.23 45 105 0.59 46 4 0.02 47 22 0.12 48 4 0.02 49 1 0.01 ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26 Consensus pattern (45 bp): GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA Found at i:84522517 original size:89 final size:89 Alignment explanation
Indices: 84522408--84522576 Score: 239 Period size: 89 Copynumber: 1.9 Consensus size: 89 84522398 CCAAGATGAC * * * * 84522408 AGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGGATATAACAGATTTGACATCTCTGTATT 1 AGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGATAACAAATTTGACATCTATGTATT * 84522473 ATACGGGAAGCAGATTGAAGAAGT 66 AGACGGGAAGCAGATTGAAGAAGT * * * * * 84522497 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAAATTTGGCGTCTATGTATT 1 AGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGATAACAAATTTGACATCTATGTATT * 84522562 AGACGGGGAGCAGAT 66 AGACGGGAAGCAGAT 84522577 CAAAGATAGC Statistics Matches: 69, Mismatches: 11, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 89 69 1.00 ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27 Consensus pattern (89 bp): AGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGATAACAAATTTGACATCTATGTATT AGACGGGAAGCAGATTGAAGAAGT Found at i:84522966 original size:19 final size:19 Alignment explanation
Indices: 84522941--84523013 Score: 114 Period size: 19 Copynumber: 3.9 Consensus size: 19 84522931 ATAATCTTCA 84522941 ATGATATGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT * 84522960 GTGATATGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT * 84522979 ATCATA--CAATCTTAGAT 1 ATGATATGCAATCTTAGAT 84522996 ATGATATGCAATCTTAGA 1 ATGATATGCAATCTTAGA 84523014 AGATATGATT Statistics Matches: 48, Mismatches: 4, Indels: 4 0.86 0.07 0.07 Matches are distributed among these distances: 17 16 0.33 19 32 0.67 ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36 Consensus pattern (19 bp): ATGATATGCAATCTTAGAT Found at i:84523039 original size:22 final size:22 Alignment explanation
Indices: 84522941--84523039 Score: 60 Period size: 19 Copynumber: 5.0 Consensus size: 22 84522931 ATAATCTTCA 84522941 ATGATATGCAATC-T--TAGAT 1 ATGATATGCAATCTTAGTAGAT * 84522960 GTGATATGCAATC-T--TAGAT 1 ATGATATGCAATCTTAGTAGAT * 84522979 ATCATA--CAATCTT---AGAT 1 ATGATATGCAATCTTAGTAGAT * 84522996 ATGATATGCAATCTTAGAAGAT 1 ATGATATGCAATCTTAGTAGAT * * 84523018 ATGATTTTGTAATCTTA-TAGAT 1 ATGA-TATGCAATCTTAGTAGAT 84523040 TTAATTTGTA Statistics Matches: 66, Mismatches: 7, Indels: 11 0.79 0.08 0.13 Matches are distributed among these distances: 17 14 0.21 18 1 0.02 19 29 0.44 22 12 0.18 23 10 0.15 ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38 Consensus pattern (22 bp): ATGATATGCAATCTTAGTAGAT Found at i:84525910 original size:21 final size:21 Alignment explanation
Indices: 84525885--84525932 Score: 53 Period size: 21 Copynumber: 2.3 Consensus size: 21 84525875 ACCCTAACTG * 84525885 AACCCCACAACC-TAAATCCTA 1 AACCCCA-AACCATAAACCCTA * * 84525906 AACCCTAAACCATACACCCTA 1 AACCCCAAACCATAAACCCTA 84525927 AACCCC 1 AACCCC 84525933 TTATATATGC Statistics Matches: 22, Mismatches: 4, Indels: 2 0.79 0.14 0.07 Matches are distributed among these distances: 20 4 0.18 21 18 0.82 ACGTcount: A:0.42, C:0.46, G:0.00, T:0.12 Consensus pattern (21 bp): AACCCCAAACCATAAACCCTA Found at i:84526440 original size:141 final size:141 Alignment explanation
Indices: 84526050--84526875 Score: 980 Period size: 141 Copynumber: 5.9 Consensus size: 141 84526040 AGTGTTGGAT * * ** * * 84526050 AAAGCCGACTCTTATTTAAGTTTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGA 1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTG- * ** * * * * * * 84526115 CC-AAAGCGTATGTCAGAAAGTCTATCCCAACACTT-AGGAA-TAT----A-TATA-TATCGTCT 65 CCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCT ** 84526171 TAGGACTGGAC- 130 TAGGACTACACA * * * * * * 84526182 AAATCCAACTATTATTTAAGCGTTGACTTAGGCATACATATTCCAACCCTTATACAAAGAGTTGG 1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC * * * 84526247 CTAAAACATA-AGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCT 66 CTAAAGCGTATA-TTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCT 84526311 TAGGACTACACA 130 TAGGACTACACA * 84526323 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCCAACCCTTATACAAAGAGTTGC 1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC * 84526388 CTAAAGCGTATATTGGCATGTATATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCTT 66 CTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCTT 84526453 AGGACTACACA 131 AGGACTACACA 84526464 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC 1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC * * 84526529 CTAAAGCGTATATTGGCATGTCTATCCCAACACATAAGAAAGTGTCGCCAAAATAGTGTCGTCTT 66 CTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCTT 84526594 AGGACTACACA 131 AGGACTACACA * * 84526605 AAAACCAACTCTTATTCAAGCGTTGCTTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC 1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC * * * * * * * * 84526670 CGAAAGCATATCTTGGCATGTCTATCGCAACATTTAAAAAAGCGTCGCCATAATAGTGTCGTCTT 66 CTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCTT * * 84526735 AGGGCTAGAC- 131 AGGACTACACA * * * * * * * * * * 84526745 AACGTCAACTCTTATTTAAGCGTTGCTTTAAGCATGCATATCCCAACTCTTATACAAAAAATTGG 1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC * * * * * * * 84526810 C-GAAGCGTATGTTGGCCA-GTCTATTCCAACACTTAAGAAAATGTTGCCCCACA-AGTGTCGTA 66 CTAAAGCGTATATTGG-CATGTCTATCCCAACACTTAAGAAAGTGTCGCCACA-ATAGTGTCGTC 84526872 TTAG 129 TTAG 84526876 CACTGTTTTG Statistics Matches: 609, Mismatches: 71, Indels: 21 0.87 0.10 0.03 Matches are distributed among these distances: 131 1 0.00 132 81 0.13 133 4 0.01 134 2 0.00 138 1 0.00 139 50 0.08 140 75 0.12 141 394 0.65 142 1 0.00 ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27 Consensus pattern (141 bp): AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGC CTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATAGTGTCGTCTT AGGACTACACA Found at i:84527054 original size:3 final size:3 Alignment explanation
Indices: 84527046--84527099 Score: 108 Period size: 3 Copynumber: 18.0 Consensus size: 3 84527036 CAAAGTTTAG 84527046 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT 1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT 84527094 ATT ATT 1 ATT ATT 84527100 GTTGTTGTTG Statistics Matches: 51, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 51 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (3 bp): ATT Found at i:84530716 original size:29 final size:29 Alignment explanation
Indices: 84530684--84530741 Score: 73 Period size: 29 Copynumber: 2.0 Consensus size: 29 84530674 ATAAAATACA * * 84530684 TTAATAGTA-ATGTATTAGATTGAACATTT 1 TTAA-AGTATATGTATCACATTGAACATTT * 84530713 TTAAAGTATATGTATCACATTGGACATTT 1 TTAAAGTATATGTATCACATTGAACATTT 84530742 AATGAAAGTA Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 28 4 0.16 29 21 0.84 ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43 Consensus pattern (29 bp): TTAAAGTATATGTATCACATTGAACATTT Found at i:84534578 original size:47 final size:48 Alignment explanation
Indices: 84534463--84534593 Score: 140 Period size: 47 Copynumber: 2.8 Consensus size: 48 84534453 TAGTTGGCAG * * * ** 84534463 TTCATCTACTTGACCAGTGGTTTATCCACAATATATTCTAGTTGGCAA 1 TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATTCTAGTCAGCAA * * * * 84534511 TT-ATTTGCTAGACCAATGGTTTATCCACAACGTATTTTAGTCAGC-A 1 TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATTCTAGTCAGCAA * * * 84534557 TTCATCTGCTCGATCAGTGGTTTATCCATAATGTATT 1 TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATT 84534594 AGTAGCTTTT Statistics Matches: 67, Mismatches: 15, Indels: 3 0.79 0.18 0.04 Matches are distributed among these distances: 46 3 0.04 47 62 0.93 48 2 0.03 ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39 Consensus pattern (48 bp): TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATTCTAGTCAGCAA Found at i:84535799 original size:29 final size:29 Alignment explanation
Indices: 84535722--84535802 Score: 101 Period size: 29 Copynumber: 2.8 Consensus size: 29 84535712 GCAAAGGTTA * 84535722 TATGACA-TTTTGAAAAGACACTTATTGT 1 TATGACATTTTTGAAAAGACACTTAATGT * * * 84535750 TATGACCTTTCTGAAATGACACTTAATGT 1 TATGACATTTTTGAAAAGACACTTAATGT * * 84535779 TATGACATTTTTTAAACGACACTT 1 TATGACATTTTTGAAAAGACACTT 84535803 TATCACATTT Statistics Matches: 44, Mismatches: 8, Indels: 1 0.83 0.15 0.02 Matches are distributed among these distances: 28 6 0.14 29 38 0.86 ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40 Consensus pattern (29 bp): TATGACATTTTTGAAAAGACACTTAATGT Found at i:84546582 original size:30 final size:30 Alignment explanation
Indices: 84546491--84546608 Score: 83 Period size: 30 Copynumber: 4.1 Consensus size: 30 84546481 TTAAGTTGTA * * 84546491 TATTTTTATAAGAGTTAAAATATAATTTTAT 1 TATTTTTAGAAGA-TTAAATTATAATTTTAT * 84546522 TA-TTTTA-ATGA-T---TTAT-ATTTTAT 1 TATTTTTAGAAGATTAAATTATAATTTTAT * 84546545 AATTTTTTA-AAGGATTAAATTATAATTTTAT 1 TA-TTTTTAGAA-GATTAAATTATAATTTTAT * * 84546576 TATTTTTAGAAG-TTGAAAGTAAAATTTTAT 1 TATTTTTAGAAGATT-AAATTATAATTTTAT 84546606 TAT 1 TAT 84546609 GTACAATTTT Statistics Matches: 70, Mismatches: 7, Indels: 21 0.71 0.07 0.21 Matches are distributed among these distances: 23 8 0.11 24 3 0.04 25 6 0.09 26 2 0.03 27 2 0.03 29 5 0.07 30 32 0.46 31 12 0.17 ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53 Consensus pattern (30 bp): TATTTTTAGAAGATTAAATTATAATTTTAT Found at i:84564604 original size:30 final size:31 Alignment explanation
Indices: 84564564--84564629 Score: 82 Period size: 34 Copynumber: 2.1 Consensus size: 31 84564554 TTTGACATTA 84564564 TTTTTTTAAGC-A-TTAAATTGAAAATGAAT 1 TTTTTTTAAGCAACTTAAATTGAAAATGAAT * 84564593 TTTTTTATAAGCGAAGCTTGAATTGAAAATGAAT 1 TTTTTT-TAAGC-AA-CTTAAATTGAAAATGAAT 84564627 TTT 1 TTT 84564630 ATTAAGAGGG Statistics Matches: 31, Mismatches: 1, Indels: 5 0.84 0.03 0.14 Matches are distributed among these distances: 29 6 0.19 30 5 0.16 32 1 0.03 34 19 0.61 ACGTcount: A:0.38, C:0.05, G:0.14, T:0.44 Consensus pattern (31 bp): TTTTTTTAAGCAACTTAAATTGAAAATGAAT Found at i:84564769 original size:22 final size:24 Alignment explanation
Indices: 84564726--84564769 Score: 65 Period size: 22 Copynumber: 1.9 Consensus size: 24 84564716 TGATAATATG 84564726 TTTTGATATAACAAATTAAAGTGT 1 TTTTGATATAACAAATTAAAGTGT * 84564750 TTTTGA-ATAA-AAGTTAAAGT 1 TTTTGATATAACAAATTAAAGT 84564770 TGAACAAATT Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 22 9 0.47 23 4 0.21 24 6 0.32 ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41 Consensus pattern (24 bp): TTTTGATATAACAAATTAAAGTGT Found at i:84565006 original size:21 final size:21 Alignment explanation
Indices: 84564980--84565020 Score: 73 Period size: 21 Copynumber: 2.0 Consensus size: 21 84564970 CAATGATTTA 84564980 CAAAAAGTATCAATACCTTTC 1 CAAAAAGTATCAATACCTTTC * 84565001 CAAAAAGTATCGATACCTTT 1 CAAAAAGTATCAATACCTTT 84565021 TACCAGGTAT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 21 19 1.00 ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29 Consensus pattern (21 bp): CAAAAAGTATCAATACCTTTC Found at i:84567884 original size:46 final size:46 Alignment explanation
Indices: 84567831--84567952 Score: 226 Period size: 46 Copynumber: 2.7 Consensus size: 46 84567821 TCATTTATGT 84567831 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA 1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA * 84567877 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCATTGAGACGAGA 1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA * 84567923 GCTAGTATAAGACATGTCTGGGACATGCAT 1 GCTAGTGTAAGACATGTCTGGGACATGCAT 84567953 TAGCCTCGCG Statistics Matches: 73, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 46 73 1.00 ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22 Consensus pattern (46 bp): GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA Found at i:84575516 original size:46 final size:47 Alignment explanation
Indices: 84575441--84575703 Score: 171 Period size: 46 Copynumber: 5.6 Consensus size: 47 84575431 TCATTTGTGT * * * 84575441 GCTAGTGCAAGACATGTTTGGGACATGCATCAACCA-CAATATGAGA 1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGA * *** * * * 84575487 GCCAGTGTAAGACATGTCTGGGACATGCAT-TGGCATTGAGACGAGA 1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGA * * ** * * * 84575533 GCTAGTGTAAGACATGTCTAGGACATGCTTC-GGCATTGAGACGAGA 1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGA * * * * 84575579 GCTAGTGTAAGACATGTATGGGACATGCATTAGCC-TCGCGATAT-ACAA 1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCAT--CGATATGA-GA * * * * 84575627 GCTAGTGTAAGACCTTTCTAGGACATGGCATCGACACCAAT-G-GATGAGA 1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC-A-ACC-ATCGATATGAGA * 84575676 GCCAGTGTAAGACCATGTCTGGGACATG 1 GCTAGTGTAAGA-CATGTCTGGGACATG 84575704 GCGTCGGCAT Statistics Matches: 170, Mismatches: 34, Indels: 23 0.75 0.15 0.10 Matches are distributed among these distances: 45 2 0.01 46 103 0.61 47 3 0.02 48 26 0.15 49 19 0.11 50 14 0.08 51 2 0.01 53 1 0.01 ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23 Consensus pattern (47 bp): GCTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGA Found at i:84581315 original size:33 final size:32 Alignment explanation
Indices: 84581242--84581319 Score: 84 Period size: 33 Copynumber: 2.4 Consensus size: 32 84581232 CAGTATTTAT * * * ** 84581242 ATGTAAGACCATAGCTGGGCTATGGCATTGTG 1 ATGTAAGACCATAACTGGGCTATAGCACTACG * 84581274 ATGATAAGACCATAACTGGGTTATAGCACTACG 1 ATG-TAAGACCATAACTGGGCTATAGCACTACG 84581307 AATGTAAGACCAT 1 -ATGTAAGACCAT 84581320 GGCAGAGTCA Statistics Matches: 38, Mismatches: 6, Indels: 3 0.81 0.13 0.06 Matches are distributed among these distances: 32 3 0.08 33 32 0.84 34 3 0.08 ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26 Consensus pattern (32 bp): ATGTAAGACCATAACTGGGCTATAGCACTACG Found at i:84585280 original size:20 final size:19 Alignment explanation
Indices: 84585246--84585286 Score: 55 Period size: 19 Copynumber: 2.1 Consensus size: 19 84585236 AGAATAACAG * 84585246 ATTAAAAAATTATATCTTA 1 ATTAAAAAATCATATCTTA * 84585265 ATTAAAAAATCCATATTTTA 1 ATTAAAAAAT-CATATCTTA 84585285 AT 1 AT 84585287 CACTATTTTA Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 19 10 0.53 20 9 0.47 ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41 Consensus pattern (19 bp): ATTAAAAAATCATATCTTA Found at i:84585347 original size:19 final size:19 Alignment explanation
Indices: 84585323--84585367 Score: 72 Period size: 19 Copynumber: 2.3 Consensus size: 19 84585313 TTTTCTTTCC 84585323 TATTTTAAATAATTTTTAT 1 TATTTTAAATAATTTTTAT * 84585342 TATTTTTAATAATTTTTAT 1 TATTTTAAATAATTTTTAT 84585361 TACTTTT 1 TA-TTTT 84585368 CATTCACATA Statistics Matches: 24, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 19 20 0.83 20 4 0.17 ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67 Consensus pattern (19 bp): TATTTTAAATAATTTTTAT Found at i:84586474 original size:17 final size:15 Alignment explanation
Indices: 84586443--84586476 Score: 50 Period size: 17 Copynumber: 2.1 Consensus size: 15 84586433 TAATTGAAAA 84586443 TAATAATTATTTAAT 1 TAATAATTATTTAAT 84586458 TAATAAATTATTTTAAT 1 TAAT-AATTA-TTTAAT 84586475 TA 1 TA 84586477 TTATTTGTAC Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 15 4 0.24 16 5 0.29 17 8 0.47 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (15 bp): TAATAATTATTTAAT Found at i:84586648 original size:22 final size:22 Alignment explanation
Indices: 84586617--84586660 Score: 79 Period size: 22 Copynumber: 2.0 Consensus size: 22 84586607 TACACCAAAA * 84586617 TAGGCTTTTAGCGGCGCTTTTT 1 TAGGCCTTTAGCGGCGCTTTTT 84586639 TAGGCCTTTAGCGGCGCTTTTT 1 TAGGCCTTTAGCGGCGCTTTTT 84586661 AGCGCCACTA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 22 21 1.00 ACGTcount: A:0.09, C:0.20, G:0.27, T:0.43 Consensus pattern (22 bp): TAGGCCTTTAGCGGCGCTTTTT Found at i:84586843 original size:42 final size:42 Alignment explanation
Indices: 84586728--84586870 Score: 198 Period size: 43 Copynumber: 3.4 Consensus size: 42 84586718 ACGTCGCTAA * * 84586728 CTTTTGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCATGTT 1 CTTTAGCGGCGCTT-TCCCACAAATGCCGCTAAAGACCATGTT * 84586771 CTTTAGCGGCGCTTTTCCCA-TAATCGCCGCTAAAGACCATGTT 1 CTTTAGCGGCGC-TTTCCCACAAAT-GCCGCTAAAGACCATGTT * * 84586814 CTTTAGCGGCGCTTTCCCACAAATGCCGCTAAAGACTATGAT 1 CTTTAGCGGCGCTTTCCCACAAATGCCGCTAAAGACCATGTT * 84586856 CTTTAGCGACGCTTT 1 CTTTAGCGGCGCTTT 84586871 TTATCTCAAA Statistics Matches: 90, Mismatches: 7, Indels: 7 0.87 0.07 0.07 Matches are distributed among these distances: 42 39 0.43 43 49 0.54 44 2 0.02 ACGTcount: A:0.22, C:0.31, G:0.19, T:0.29 Consensus pattern (42 bp): CTTTAGCGGCGCTTTCCCACAAATGCCGCTAAAGACCATGTT Found at i:84586903 original size:85 final size:86 Alignment explanation
Indices: 84586728--84586932 Score: 229 Period size: 85 Copynumber: 2.4 Consensus size: 86 84586718 ACGTCGCTAA * * * 84586728 CTTTTGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTTTCCCATA 1 CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGACGCTTTTCCCATA * *** 84586793 ATCGCCGCTAAAGACCATGTT 66 ATCGCCGCTAAAGAACATAAC * * * 84586814 CTTTAGCGGCGCTT-TCCCACAAATGCCGCTAAAGACTATGATCTTTAGCGACGCTTTTTATCTC 1 CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGACGC--TTT-TCCC * 84586878 A-AA-CGCCGCTATAGAACA-AAC 63 ATAATCGCCGCTAAAGAACATAAC * * * 84586899 CTTTAGCGACGCTTCTCGCAAAAACGCCGCTAAA 1 CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAA 84586933 AACATATCAT Statistics Matches: 100, Mismatches: 15, Indels: 8 0.81 0.12 0.07 Matches are distributed among these distances: 85 49 0.49 86 42 0.42 87 5 0.05 88 4 0.04 ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26 Consensus pattern (86 bp): CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCATGATCTTTAGCGACGCTTTTCCCATA ATCGCCGCTAAAGAACATAAC Found at i:84587003 original size:24 final size:22 Alignment explanation
Indices: 84586962--84587005 Score: 61 Period size: 22 Copynumber: 1.9 Consensus size: 22 84586952 TTATTTTAAT 84586962 TAAATAATATTTATTTTTATGA 1 TAAATAATATTTATTTTTATGA * 84586984 TAAATATTATATTATGTTTTAT 1 TAAATAATAT-TTAT-TTTTAT 84587006 TTTTTAATTT Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 22 9 0.47 23 4 0.21 24 6 0.32 ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57 Consensus pattern (22 bp): TAAATAATATTTATTTTTATGA Found at i:84590798 original size:49 final size:49 Alignment explanation
Indices: 84590744--84590837 Score: 161 Period size: 49 Copynumber: 1.9 Consensus size: 49 84590734 CACCAATTAA * * * 84590744 TCCTAAACCCTAAATCGTAAAATAGAAACTCTAAACCCCTAACCCTATC 1 TCCTAAACCCTAAATCATAAAACAAAAACTCTAAACCCCTAACCCTATC 84590793 TCCTAAACCCTAAATCATAAAACAAAAACTCTAAACCCCTAACCC 1 TCCTAAACCCTAAATCATAAAACAAAAACTCTAAACCCCTAACCC 84590838 CTATTTTACA Statistics Matches: 42, Mismatches: 3, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 49 42 1.00 ACGTcount: A:0.44, C:0.34, G:0.02, T:0.20 Consensus pattern (49 bp): TCCTAAACCCTAAATCATAAAACAAAAACTCTAAACCCCTAACCCTATC Found at i:84590961 original size:21 final size:21 Alignment explanation
Indices: 84590945--84590989 Score: 65 Period size: 21 Copynumber: 2.1 Consensus size: 21 84590935 CACTAACTCT * 84590945 TAACCTCTAACATCTAACCCC 1 TAACCCCTAACATCTAACCCC 84590966 TAACCCCTAAC-TACTAACCCC 1 TAACCCCTAACAT-CTAACCCC 84590987 TAA 1 TAA 84590990 ACCTTATTTA Statistics Matches: 22, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 20 1 0.05 21 21 0.95 ACGTcount: A:0.36, C:0.42, G:0.00, T:0.22 Consensus pattern (21 bp): TAACCCCTAACATCTAACCCC Found at i:84591683 original size:22 final size:21 Alignment explanation
Indices: 84591627--84591710 Score: 57 Period size: 21 Copynumber: 4.0 Consensus size: 21 84591617 AACCTTAAAT 84591627 CTCT-AACTCTTAAACCCTAAC 1 CTCTAAAC-CTTAAACCCTAAC * * * * 84591648 ATCTAATCCCTAAACCCCTGAC 1 CTCTAAACCTTAAA-CCCTAAC 84591670 CTCTAAACCTTAAATCCC-AAC 1 CTCTAAACCTTAAA-CCCTAAC * * 84591691 C-CTTAAACCATAAACGCTAA 1 CTC-TAAACCTTAAACCCTAA 84591711 TCCATAATCC Statistics Matches: 48, Mismatches: 11, Indels: 8 0.72 0.16 0.12 Matches are distributed among these distances: 20 3 0.06 21 23 0.48 22 22 0.46 ACGTcount: A:0.37, C:0.37, G:0.02, T:0.24 Consensus pattern (21 bp): CTCTAAACCTTAAACCCTAAC Found at i:84591729 original size:15 final size:15 Alignment explanation
Indices: 84591709--84591740 Score: 55 Period size: 15 Copynumber: 2.1 Consensus size: 15 84591699 CATAAACGCT 84591709 AATCCATAATCCCTA 1 AATCCATAATCCCTA * 84591724 AATCCATACTCCCTA 1 AATCCATAATCCCTA 84591739 AA 1 AA 84591741 CATTAAAATA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25 Consensus pattern (15 bp): AATCCATAATCCCTA Found at i:84592366 original size:41 final size:41 Alignment explanation
Indices: 84592311--84592506 Score: 311 Period size: 41 Copynumber: 4.8 Consensus size: 41 84592301 ATAAAATGCT * 84592311 TTTAGCGGCGCTTCTTAAAAAACGCCCCTAAAGACCAGAGC 1 TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGACCAGAGC * 84592352 TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGACCAGAGA 1 TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGACCAGAGC * 84592393 TTTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGC 1 TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGACCAGAGC * * * * * 84592434 ATTAGGGGCGCTTCATCAAAAACGCCGCTAAAGACTAGAGC 1 TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGACCAGAGC * 84592475 ATTAGCGGCGCTTCTTAAAAAACGCCGCTAAA 1 TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAA 84592507 TCGCTAAAAA Statistics Matches: 144, Mismatches: 11, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 41 144 1.00 ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19 Consensus pattern (41 bp): TTTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGACCAGAGC Found at i:84592681 original size:40 final size:40 Alignment explanation
Indices: 84592558--84592683 Score: 132 Period size: 40 Copynumber: 3.2 Consensus size: 40 84592548 TTTGCGACGC * * * * * 84592558 TTTTTGTAAAACGCCGCTAATG-CTCATTTTTAGTGGCG- 1 TTTTTATAAAGCGCCGCTAATGATTGATTTTTAGCGGCGT * * * 84592596 TTTTTAGAAAAGCGCCGCTAAT-ACTCGATCTTTAGCGGCGT 1 TTTTTA-TAAAGCGCCGCTAATGA-TTGATTTTTAGCGGCGT * 84592637 TTTTTATATAGCGCCGCTAATGATTGATTTTTAGCGGCGT 1 TTTTTATAAAGCGCCGCTAATGATTGATTTTTAGCGGCGT 84592677 TTTTTAT 1 TTTTTAT 84592684 TCAAACGCCA Statistics Matches: 71, Mismatches: 12, Indels: 8 0.78 0.13 0.09 Matches are distributed among these distances: 38 5 0.07 39 13 0.18 40 46 0.65 41 7 0.10 ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40 Consensus pattern (40 bp): TTTTTATAAAGCGCCGCTAATGATTGATTTTTAGCGGCGT Found at i:84593640 original size:20 final size:20 Alignment explanation
Indices: 84593585--84593626 Score: 59 Period size: 20 Copynumber: 2.1 Consensus size: 20 84593575 CCATTATTTT * 84593585 TTAATTAAA-AGAGAAATGAA 1 TTAATCAAATAGA-AAATGAA 84593605 TTAATCAAATAGAAAATGAA 1 TTAATCAAATAGAAAATGAA 84593625 TT 1 TT 84593627 GATAAATAAT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 20 17 0.85 21 3 0.15 ACGTcount: A:0.57, C:0.02, G:0.12, T:0.29 Consensus pattern (20 bp): TTAATCAAATAGAAAATGAA Found at i:84594570 original size:26 final size:27 Alignment explanation
Indices: 84594541--84594602 Score: 92 Period size: 26 Copynumber: 2.3 Consensus size: 27 84594531 TATCGAAACT 84594541 TATAAAATA-TATAAAAAT-ATTTAAAA 1 TATAAAATATTA-AAAAATAATTTAAAA 84594567 TATAAAATATTAAAAAATAATTTAAAA 1 TATAAAATATTAAAAAATAATTTAAAA 84594594 TATTAAAAT 1 TA-TAAAAT 84594603 CCTATATCAA Statistics Matches: 33, Mismatches: 0, Indels: 4 0.89 0.00 0.11 Matches are distributed among these distances: 26 15 0.45 27 12 0.36 28 6 0.18 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (27 bp): TATAAAATATTAAAAAATAATTTAAAA Found at i:84594571 original size:17 final size:16 Alignment explanation
Indices: 84594549--84594586 Score: 51 Period size: 15 Copynumber: 2.4 Consensus size: 16 84594539 CTTATAAAAT 84594549 ATATAAAAATATTTAAA 1 ATATAAAAATA-TTAAA 84594566 ATAT-AAAATATTAAA 1 ATATAAAAATATTAAA * 84594581 AAATAA 1 ATATAA 84594587 TTTAAAATAT Statistics Matches: 19, Mismatches: 1, Indels: 3 0.83 0.04 0.13 Matches are distributed among these distances: 15 8 0.42 16 7 0.37 17 4 0.21 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (16 bp): ATATAAAAATATTAAA Found at i:84597566 original size:27 final size:27 Alignment explanation
Indices: 84597483--84597578 Score: 93 Period size: 27 Copynumber: 3.6 Consensus size: 27 84597473 GAGTATGAAA ** * 84597483 AACTCTGAACAAATAATACGTATGGAA 1 AACTCTGAAGGAATAATACGTATGGAG * * * * * * 84597510 AAATTTGAAAGAATAGTACGTATAGTG 1 AACTCTGAAGGAATAATACGTATGGAG * 84597537 AACTCTGAAGGAATAATACGTATGGCG 1 AACTCTGAAGGAATAATACGTATGGAG * 84597564 AACTCTAAAGGAATA 1 AACTCTGAAGGAATA 84597579 GTTCCATAGA Statistics Matches: 54, Mismatches: 15, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 27 54 1.00 ACGTcount: A:0.45, C:0.11, G:0.20, T:0.24 Consensus pattern (27 bp): AACTCTGAAGGAATAATACGTATGGAG Found at i:84599055 original size:15 final size:15 Alignment explanation
Indices: 84599035--84599069 Score: 61 Period size: 15 Copynumber: 2.3 Consensus size: 15 84599025 TACGAAACCT * 84599035 AGTACATGCCATTCC 1 AGTACATACCATTCC 84599050 AGTACATACCATTCC 1 AGTACATACCATTCC 84599065 AGTAC 1 AGTAC 84599070 CTGACACCAT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 15 19 1.00 ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26 Consensus pattern (15 bp): AGTACATACCATTCC Found at i:84601184 original size:64 final size:64 Alignment explanation
Indices: 84600961--84601190 Score: 205 Period size: 64 Copynumber: 3.6 Consensus size: 64 84600951 CCATGTTATG * * * * * * ** * * 84600961 CTTATTTTGTAATCAGTGAATTACACGACCTGGACACACGTTC-GTGTCCTTAACCCGTATAATC 1 CTTATTTTGTAATCAGTGAGTTACATGGCCTGCACACA-ATCCAGTGTCCTTGGCCCATATGATC * * * * 84601025 CGTATTTTGTAATCAGTGAGTTACATGGCCTGCACACACTCCTGTGTCCTTGGCCCGTATGAT- 1 CTTATTTTGTAATCAGTGAGTTACATGGCCTGCACACAATCCAGTGTCCTTGGCCCATATGATC * * ** * * * 84601088 CTATATTTTATAATCAATGAGTTACACAGCCTGTACA-AATGCCAGTGTCCTTGGCCTATGTGAT 1 CT-TATTTTGTAATCAGTGAGTTACATGGCCTGCACACAAT-CCAGTGTCCTTGGCCCATATGAT 84601152 C 64 C * * 84601153 CTTATTTTGTAATCAGTCAGTTACATGGCCTGGACACA 1 CTTATTTTGTAATCAGTGAGTTACATGGCCTGCACACA 84601191 TGTCCGTGTG Statistics Matches: 134, Mismatches: 27, Indels: 9 0.79 0.16 0.05 Matches are distributed among these distances: 63 5 0.04 64 126 0.94 65 3 0.02 ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33 Consensus pattern (64 bp): CTTATTTTGTAATCAGTGAGTTACATGGCCTGCACACAATCCAGTGTCCTTGGCCCATATGATC Found at i:84603399 original size:6 final size:6 Alignment explanation
Indices: 84603385--84603423 Score: 69 Period size: 6 Copynumber: 6.5 Consensus size: 6 84603375 AAGTTACACA * 84603385 GTTAAG GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTT 1 GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTTAGG GTT 84603424 GAAAATGGTT Statistics Matches: 32, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 6 32 1.00 ACGTcount: A:0.18, C:0.00, G:0.46, T:0.36 Consensus pattern (6 bp): GTTAGG Found at i:84606213 original size:28 final size:28 Alignment explanation
Indices: 84606181--84606239 Score: 118 Period size: 28 Copynumber: 2.1 Consensus size: 28 84606171 TTATTTTTTT 84606181 ATTAGCTTAGAAGAGGCATAAATTAGGG 1 ATTAGCTTAGAAGAGGCATAAATTAGGG 84606209 ATTAGCTTAGAAGAGGCATAAATTAGGG 1 ATTAGCTTAGAAGAGGCATAAATTAGGG 84606237 ATT 1 ATT 84606240 TTCTTTAACT Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 28 31 1.00 ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27 Consensus pattern (28 bp): ATTAGCTTAGAAGAGGCATAAATTAGGG Found at i:84608642 original size:11 final size:11 Alignment explanation
Indices: 84608574--84608642 Score: 54 Period size: 11 Copynumber: 6.3 Consensus size: 11 84608564 GATAAAAGAA * 84608574 AAAGAAATAGG 1 AAAGAAAAAGG * 84608585 AAAAAAAAAGG 1 AAAGAAAAAGG 84608596 AAAG--AAAGTG 1 AAAGAAAAAG-G * 84608606 AAACGAAACA-G 1 AAA-GAAAAAGG * 84608617 AAGGAAAAAGAG 1 AAAGAAAAAG-G 84608629 AAAGAAAAAGG 1 AAAGAAAAAGG 84608640 AAA 1 AAA 84608643 AAGTTAGGGT Statistics Matches: 45, Mismatches: 7, Indels: 12 0.70 0.11 0.19 Matches are distributed among these distances: 9 4 0.09 10 9 0.20 11 20 0.44 12 10 0.22 13 2 0.04 ACGTcount: A:0.70, C:0.03, G:0.25, T:0.03 Consensus pattern (11 bp): AAAGAAAAAGG Found at i:84609551 original size:41 final size:38 Alignment explanation
Indices: 84609507--84609638 Score: 131 Period size: 40 Copynumber: 3.4 Consensus size: 38 84609497 GACTTCAAGT * 84609507 CGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATT 1 CGATGAGACACTGGGTGTCAA-TTA-TACTTCGGATT-ATC * * * * * 84609548 CGATGAGGCACTGAGTGCCAATT-TACTTCGGTTTAGC 1 CGATGAGACACTGGGTGTCAATTATACTTCGGATTATC * * 84609585 CGATGAGACATTGGGTGTCAAATTATTACTTCGAATTATC 1 CGATGAGACACTGGGTGTC-AATTA-TACTTCGGATTATC * 84609625 CGATGAGGCACTGG 1 CGATGAGACACTGG 84609639 TGCCAAACTA Statistics Matches: 73, Mismatches: 15, Indels: 7 0.77 0.16 0.07 Matches are distributed among these distances: 37 16 0.22 38 14 0.19 40 25 0.34 41 18 0.25 ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31 Consensus pattern (38 bp): CGATGAGACACTGGGTGTCAATTATACTTCGGATTATC Found at i:84612727 original size:38 final size:38 Alignment explanation
Indices: 84612679--84612784 Score: 149 Period size: 38 Copynumber: 2.8 Consensus size: 38 84612669 CTAGGATTTG * 84612679 TTGCAAATTCTCGGGTAACATAACGAGATCTAGCCTTA 1 TTGCAAATTCTCGAGTAACATAACGAGATCTAGCCTTA * * * * 84612717 TTGCAGATTCTCGAGTAACCTAACAAGATCTAGCCTTG 1 TTGCAAATTCTCGAGTAACATAACGAGATCTAGCCTTA * * 84612755 TTGCAAATTCTTGAGTAATATAACGAGATC 1 TTGCAAATTCTCGAGTAACATAACGAGATC 84612785 CAACCTTTTT Statistics Matches: 58, Mismatches: 10, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 38 58 1.00 ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30 Consensus pattern (38 bp): TTGCAAATTCTCGAGTAACATAACGAGATCTAGCCTTA Found at i:84614205 original size:20 final size:19 Alignment explanation
Indices: 84614176--84614213 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 19 84614166 ATGTTGAATC 84614176 AAATGAATAGAAATAGATAG 1 AAATGAATAGAAAT-GATAG * 84614196 AAATGGATAGAAATGATA 1 AAATGAATAGAAATGATA 84614214 AAGTTAGATA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 19 4 0.24 20 13 0.76 ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21 Consensus pattern (19 bp): AAATGAATAGAAATGATAG Found at i:84625003 original size:8 final size:8 Alignment explanation
Indices: 84624990--84625020 Score: 62 Period size: 8 Copynumber: 3.9 Consensus size: 8 84624980 AAACAAAATT 84624990 TAAATACG 1 TAAATACG 84624998 TAAATACG 1 TAAATACG 84625006 TAAATACG 1 TAAATACG 84625014 TAAATAC 1 TAAATAC 84625021 ATCATATTAA Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 23 1.00 ACGTcount: A:0.52, C:0.13, G:0.10, T:0.26 Consensus pattern (8 bp): TAAATACG Found at i:84627113 original size:19 final size:20 Alignment explanation
Indices: 84627091--84627129 Score: 53 Period size: 19 Copynumber: 2.0 Consensus size: 20 84627081 TTTACAAAAA * * 84627091 AAATTCTATTTTAA-TCTTT 1 AAATTATATTCTAATTCTTT 84627110 AAATTATATTCTAATTCTTT 1 AAATTATATTCTAATTCTTT 84627130 TTTAAGAGTA Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 19 12 0.71 20 5 0.29 ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56 Consensus pattern (20 bp): AAATTATATTCTAATTCTTT Found at i:84628127 original size:20 final size:20 Alignment explanation
Indices: 84628097--84628136 Score: 64 Period size: 20 Copynumber: 2.0 Consensus size: 20 84628087 TCATGTCATC 84628097 AAATATTTAAAAATTATAAAA 1 AAATATTTAAAAATT-TAAAA 84628118 AAAT-TTTAAAAATTTAAAA 1 AAATATTTAAAAATTTAAAA 84628137 TTCAAAAAAA Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 19 5 0.26 20 10 0.53 21 4 0.21 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (20 bp): AAATATTTAAAAATTTAAAA Found at i:84628256 original size:22 final size:24 Alignment explanation
Indices: 84628231--84628276 Score: 69 Period size: 24 Copynumber: 2.0 Consensus size: 24 84628221 GATGTATTTA 84628231 CATA-TTTAAAT-CTCTTTTTATT 1 CATATTTTAAATACTCTTTTTATT * 84628253 CATATTTTAAATACTTTTTTTATT 1 CATATTTTAAATACTCTTTTTATT 84628277 ATGATTTCAT Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 22 4 0.19 23 7 0.33 24 10 0.48 ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61 Consensus pattern (24 bp): CATATTTTAAATACTCTTTTTATT Found at i:84629334 original size:6 final size:6 Alignment explanation
Indices: 84629323--84629404 Score: 56 Period size: 6 Copynumber: 13.0 Consensus size: 6 84629313 TTCTCTCTCC * *** * * 84629323 CTCCCT CTCCCT CTCCCT TTATGT CCCCCT CTCTCT CTCCCT CCCTCCCT 1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT --CTCCCT * * 84629373 CTACCT CTCCCT CTCTCACT CTCTCT CTCCCT 1 CTCCCT CTCCCT CTC-C-CT CTCCCT CTCCCT 84629405 TTCTCTCTCT Statistics Matches: 56, Mismatches: 16, Indels: 8 0.70 0.20 0.10 Matches are distributed among these distances: 6 44 0.79 7 1 0.02 8 11 0.20 ACGTcount: A:0.04, C:0.59, G:0.01, T:0.37 Consensus pattern (6 bp): CTCCCT Found at i:84629372 original size:20 final size:20 Alignment explanation
Indices: 84629349--84629404 Score: 78 Period size: 20 Copynumber: 2.8 Consensus size: 20 84629339 CTTTATGTCC 84629349 CCCTCTCTCTCTCCCTCCCT 1 CCCTCTCTCTCTCCCTCCCT * 84629369 CCCTCTAC-CTCTCCCTCTCT 1 CCCTCT-CTCTCTCCCTCCCT * 84629389 CACTCTCTCTCTCCCT 1 CCCTCTCTCTCTCCCT 84629405 TTCTCTCTCT Statistics Matches: 32, Mismatches: 2, Indels: 4 0.84 0.05 0.11 Matches are distributed among these distances: 19 1 0.03 20 30 0.94 21 1 0.03 ACGTcount: A:0.04, C:0.61, G:0.00, T:0.36 Consensus pattern (20 bp): CCCTCTCTCTCTCCCTCCCT Found at i:84629409 original size:10 final size:10 Alignment explanation
Indices: 84629353--84629411 Score: 59 Period size: 10 Copynumber: 5.9 Consensus size: 10 84629343 ATGTCCCCCT 84629353 CTCTCTCTCC 1 CTCTCTCTCC 84629363 CTC-C-CTCC 1 CTCTCTCTCC 84629371 CTCTACCTCTCC 1 CTCT--CTCTCC * * 84629383 CTCTCTCACT 1 CTCTCTCTCC 84629393 CTCTCTCTCC 1 CTCTCTCTCC * 84629403 CTTTCTCTC 1 CTCTCTCTC 84629412 TCTTTTTAAA Statistics Matches: 40, Mismatches: 5, Indels: 8 0.75 0.09 0.15 Matches are distributed among these distances: 8 7 0.17 9 1 0.03 10 23 0.57 11 1 0.03 12 8 0.20 ACGTcount: A:0.03, C:0.58, G:0.00, T:0.39 Consensus pattern (10 bp): CTCTCTCTCC Found at i:84629409 original size:20 final size:20 Alignment explanation
Indices: 84629351--84629414 Score: 76 Period size: 20 Copynumber: 3.2 Consensus size: 20 84629341 TTATGTCCCC * * 84629351 CTCTCTCTCTCCCTCCCTCC 1 CTCTCTCTCTCCCTCTCTCA 84629371 CTCTAC-CTCTCCCTCTCTCA 1 CTCT-CTCTCTCCCTCTCTCA * * 84629391 CTCTCTCTCTCCCTTTCTCT 1 CTCTCTCTCTCCCTCTCTCA 84629411 CTCT 1 CTCT 84629415 TTTTAAAAAT Statistics Matches: 38, Mismatches: 4, Indels: 4 0.83 0.09 0.09 Matches are distributed among these distances: 19 1 0.03 20 36 0.95 21 1 0.03 ACGTcount: A:0.03, C:0.56, G:0.00, T:0.41 Consensus pattern (20 bp): CTCTCTCTCTCCCTCTCTCA Found at i:84633312 original size:31 final size:31 Alignment explanation
Indices: 84633277--84633381 Score: 124 Period size: 31 Copynumber: 3.4 Consensus size: 31 84633267 TTATTCACAT 84633277 AATATTAAATTAATAAAATACTATCAAGATA 1 AATATTAAATTAATAAAATACTATCAAGATA * ** * * * 84633308 AATATTAAATCACATTTAATA-TCTC-ACATT 1 AATATTAAATTA-ATAAAATACTATCAAGATA 84633338 AATATTAAATTAATAAAATACTATCAAGATA 1 AATATTAAATTAATAAAATACTATCAAGATA * 84633369 AATATTTAATTAA 1 AATATTAAATTAA 84633382 ATTTAATGTT Statistics Matches: 58, Mismatches: 13, Indels: 6 0.75 0.17 0.08 Matches are distributed among these distances: 29 6 0.10 30 17 0.29 31 29 0.50 32 6 0.10 ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36 Consensus pattern (31 bp): AATATTAAATTAATAAAATACTATCAAGATA Found at i:84633371 original size:61 final size:60 Alignment explanation
Indices: 84633271--84633388 Score: 200 Period size: 61 Copynumber: 1.9 Consensus size: 60 84633261 TTGAAATTAT * 84633271 TCACATAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCACATTTAATATC 1 TCACATAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCAAATTTAATATC * * 84633331 TCACATTAATATTAAATTAATAAAATACTATCAAGATAAATATTTAATTAAATTTAAT 1 TCACA-TAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCAAATTTAAT 84633389 GTTAAATTTG Statistics Matches: 54, Mismatches: 3, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 60 5 0.09 61 49 0.91 ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37 Consensus pattern (60 bp): TCACATAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCAAATTTAATATC Found at i:84634832 original size:21 final size:22 Alignment explanation
Indices: 84634805--84634871 Score: 66 Period size: 21 Copynumber: 3.0 Consensus size: 22 84634795 AATGGGTGAA * 84634805 TATTTGGCACTTGTGTGCATTT 1 TATTTGGCACTTGTATGCATTT 84634827 TA-TTGGCGA-TTGTATGCATTT 1 TATTTGGC-ACTTGTATGCATTT * * * 84634848 ATATTTGGAACTTTTTTGCATTT 1 -TATTTGGCACTTGTATGCATTT 84634871 T 1 T 84634872 TGAAGAGTTA Statistics Matches: 37, Mismatches: 4, Indels: 8 0.76 0.08 0.16 Matches are distributed among these distances: 21 16 0.43 22 7 0.19 23 14 0.38 ACGTcount: A:0.18, C:0.10, G:0.19, T:0.52 Consensus pattern (22 bp): TATTTGGCACTTGTATGCATTT Found at i:84638154 original size:31 final size:31 Alignment explanation
Indices: 84638117--84638290 Score: 198 Period size: 31 Copynumber: 5.7 Consensus size: 31 84638107 TGTATACAAT * 84638117 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA 1 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA 84638148 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA 1 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA * * 84638179 GTGAAAAGTGGTAGCTCCAGCTACCTGATTA 1 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA * * * * 84638210 GTGAATAGTGATAGCTTCGGCTATC-GAAT- 1 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA * * 84638239 GTGAAAAG-GGATAGCTTCGGCTATC-GAAT- 1 GTGAAAAGTGG-TAGCTTCGGCTACCTGATTA * 84638268 GTGAAAAG-GGATAGCTTTGGCTA 1 GTGAAAAGTGG-TAGCTTCGGCTA 84638291 TCAAATGTGA Statistics Matches: 130, Mismatches: 12, Indels: 4 0.89 0.08 0.03 Matches are distributed among these distances: 28 1 0.01 29 47 0.36 30 3 0.02 31 79 0.61 ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27 Consensus pattern (31 bp): GTGAAAAGTGGTAGCTTCGGCTACCTGATTA Found at i:84638191 original size:62 final size:60 Alignment explanation
Indices: 84638114--84638319 Score: 215 Period size: 62 Copynumber: 3.4 Consensus size: 60 84638104 TTATGTATAC * 84638114 AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTG 1 AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGATAGCTTCGGCTACC-G * * * * * * 84638175 ATTAGTGAAAAGTGGTAGCTCCAGCTACCTGATTAGTGAATAGTGATAGCTTCGGCTATCG 1 AAT-GTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGATAGCTTCGGCTACCG * * * * * 84638236 AATGTGAAAAG-GGATAGCTTCGGCTATC-GA--ATGTGAAAAGGGATAGCTTTGGCTATCA 1 AATGTGAAAAGTGG-TAGCTTCGGCTACCTGATCA-GTGAAAAGTGATAGCTTCGGCTACCG * 84638294 AATGTGAAAAG-GGATAGCTTCAGCTA 1 AATGTGAAAAGTGG-TAGCTTCGGCTA 84638320 TCAAATTTGG Statistics Matches: 126, Mismatches: 16, Indels: 9 0.83 0.11 0.06 Matches are distributed among these distances: 57 1 0.01 58 47 0.37 59 4 0.03 60 19 0.15 61 5 0.04 62 50 0.40 ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27 Consensus pattern (60 bp): AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTGATAGCTTCGGCTACCG Found at i:84638251 original size:29 final size:30 Alignment explanation
Indices: 84638114--84638321 Score: 196 Period size: 29 Copynumber: 6.9 Consensus size: 30 84638104 TTATGTATAC * 84638114 AATGTGAAAAGTGG-TAGCTTCGGCTACCTG 1 AATGTGAAAAG-GGATAGCTTCGGCTATCTG * 84638144 -ATCAGTGAAAAGTGG-TAGCTTCGGCTACCTG 1 AAT--GTGAAAAG-GGATAGCTTCGGCTATCTG * * * * 84638175 ATTAGTGAAAAGTGG-TAGCTCCAGCTACCTG 1 AAT-GTGAAAAG-GGATAGCTTCGGCTATCTG * * * 84638206 ATTAGTGAATAGTGATAGCTTCGGCTATC-G 1 AAT-GTGAAAAGGGATAGCTTCGGCTATCTG 84638236 AATGTGAAAAGGGATAGCTTCGGCTATC-G 1 AATGTGAAAAGGGATAGCTTCGGCTATCTG * * 84638265 AATGTGAAAAGGGATAGCTTTGGCTATC-A 1 AATGTGAAAAGGGATAGCTTCGGCTATCTG * 84638294 AATGTGAAAAGGGATAGCTTCAGCTATC 1 AATGTGAAAAGGGATAGCTTCGGCTATC 84638322 AAATTTGGAA Statistics Matches: 159, Mismatches: 15, Indels: 9 0.87 0.08 0.05 Matches are distributed among these distances: 29 79 0.50 30 4 0.03 31 75 0.47 32 1 0.01 ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27 Consensus pattern (30 bp): AATGTGAAAAGGGATAGCTTCGGCTATCTG Found at i:84638284 original size:58 final size:60 Alignment explanation
Indices: 84638114--84638319 Score: 217 Period size: 58 Copynumber: 3.4 Consensus size: 60 84638104 TTATGTATAC * * 84638114 AATGTGAAAAGTGGTAGCTTCGGCTACCTG-ATCAGTGAAAAGTGG-TAGCTTCGGCTACCTG 1 AATGTGAAAAGTGGTAGCTTCAGCTACCTGAAT-AGTGAAAAG-GGATAGCTTCGGCTATC-G * * * * * 84638175 ATTAGTGAAAAGTGGTAGCTCCAGCTACCTGATTAGTGAATAGTGATAGCTTCGGCTATCG 1 AAT-GTGAAAAGTGGTAGCTTCAGCTACCTGAATAGTGAAAAGGGATAGCTTCGGCTATCG * * * * 84638236 AATGTGAAAAG-GGATAGCTTCGGCTATC-GAAT-GTGAAAAGGGATAGCTTTGGCTATCA 1 AATGTGAAAAGTGG-TAGCTTCAGCTACCTGAATAGTGAAAAGGGATAGCTTCGGCTATCG 84638294 AATGTGAAAAG-GGATAGCTTCAGCTA 1 AATGTGAAAAGTGG-TAGCTTCAGCTA 84638320 TCAAATTTGG Statistics Matches: 124, Mismatches: 17, Indels: 11 0.82 0.11 0.07 Matches are distributed among these distances: 58 47 0.38 59 5 0.04 60 19 0.15 61 6 0.05 62 46 0.37 63 1 0.01 ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27 Consensus pattern (60 bp): AATGTGAAAAGTGGTAGCTTCAGCTACCTGAATAGTGAAAAGGGATAGCTTCGGCTATCG Found at i:84638322 original size:29 final size:29 Alignment explanation
Indices: 84638210--84638334 Score: 178 Period size: 29 Copynumber: 4.3 Consensus size: 29 84638200 TACCTGATTA * * * 84638210 GTGAATAGTGATAGCTTCGGCTATCGAAT 1 GTGAAAAGGGATAGCTTCGGCTATCAAAT * 84638239 GTGAAAAGGGATAGCTTCGGCTATCGAAT 1 GTGAAAAGGGATAGCTTCGGCTATCAAAT * 84638268 GTGAAAAGGGATAGCTTTGGCTATCAAAT 1 GTGAAAAGGGATAGCTTCGGCTATCAAAT * 84638297 GTGAAAAGGGATAGCTTCAGCTATCAAAT 1 GTGAAAAGGGATAGCTTCGGCTATCAAAT * * 84638326 TTGGAAAGG 1 GTGAAAAGG 84638335 AAAGGTATAC Statistics Matches: 88, Mismatches: 8, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 29 88 1.00 ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26 Consensus pattern (29 bp): GTGAAAAGGGATAGCTTCGGCTATCAAAT Found at i:84638361 original size:33 final size:33 Alignment explanation
Indices: 84638324--84638555 Score: 347 Period size: 33 Copynumber: 7.0 Consensus size: 33 84638314 CAGCTATCAA * * 84638324 ATTTGGAAAGGAAAGGTATACTTTGTGTATACT 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC * ** 84638357 ATTTGAAAATGTTAGGTATACTTTGTGTATACC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC * * 84638390 ATTTGAAAATGAAATGTATACTTTGTGTATACC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC 84638423 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC ** 84638456 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC * * 84638489 ATATGAAAAGGAAAGGTATACTTTGTGTATATC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC * * 84638522 ATATGAAAAGGAAAGGTATACTTTGTGTGTACC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC 84638555 A 1 A 84638556 CTCAGAAAGA Statistics Matches: 181, Mismatches: 18, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 33 181 1.00 ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36 Consensus pattern (33 bp): ATTTGAAAAGGAAAGGTATACTTTGTGTATACC Found at i:84638436 original size:99 final size:99 Alignment explanation
Indices: 84638324--84638555 Score: 383 Period size: 99 Copynumber: 2.3 Consensus size: 99 84638314 CAGCTATCAA * * * 84638324 ATTTGGAAAGGAAAGGTATACTTTGTGTATACTATTTGAAAATGTTAGGTATACTTTGTGTATAC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC * * * 84638389 CATTTGAAAATGAAATGTATACTTTGTGTATACC 66 CATATGAAAAGGAAAGGTATACTTTGTGTATACC 84638423 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC * 84638488 CATATGAAAAGGAAAGGTATACTTTGTGTATATC 66 CATATGAAAAGGAAAGGTATACTTTGTGTATACC * * 84638522 ATATGAAAAGGAAAGGTATACTTTGTGTGTACCA 1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCA 84638556 CTCAGAAAGA Statistics Matches: 124, Mismatches: 9, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 99 124 1.00 ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36 Consensus pattern (99 bp): ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC CATATGAAAAGGAAAGGTATACTTTGTGTATACC Found at i:84664341 original size:21 final size:21 Alignment explanation
Indices: 84664316--84664417 Score: 105 Period size: 21 Copynumber: 4.9 Consensus size: 21 84664306 AAAAACCCTA * 84664316 TTATACCATATGCGAACCATG 1 TTATACTATATGCGAACCATG * * * * 84664337 CTATATTATATGCGAAACTTG 1 TTATACTATATGCGAACCATG * * * * 84664358 TTATACTATATGAGATCCTTA 1 TTATACTATATGCGAACCATG 84664379 TTATACTATATGCGAACCATG 1 TTATACTATATGCGAACCATG * * 84664400 TTATACTATGTGCAAACC 1 TTATACTATATGCGAACC 84664418 CATGCTATTA Statistics Matches: 64, Mismatches: 17, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 21 64 1.00 ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35 Consensus pattern (21 bp): TTATACTATATGCGAACCATG Found at i:84664591 original size:17 final size:17 Alignment explanation
Indices: 84664571--84664608 Score: 67 Period size: 17 Copynumber: 2.2 Consensus size: 17 84664561 CGAGCTCTGC 84664571 TATATTGCGAGCCCTAT 1 TATATTGCGAGCCCTAT * 84664588 TATATTGTGAGCCCTAT 1 TATATTGCGAGCCCTAT 84664605 TATA 1 TATA 84664609 CTATGAATGT Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 17 20 1.00 ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39 Consensus pattern (17 bp): TATATTGCGAGCCCTAT Found at i:84665818 original size:27 final size:27 Alignment explanation
Indices: 84665773--84665838 Score: 71 Period size: 27 Copynumber: 2.4 Consensus size: 27 84665763 AATAAGAGAT ** * 84665773 CGTAGGGTAAATTGAGAACTAGCG-ATT 1 CGTAGGGTAGGTTGAGAACTAG-GTATC * * 84665800 TGTAGGGTAGGTTGTGAACTAGGTATC 1 CGTAGGGTAGGTTGAGAACTAGGTATC 84665827 CGTAGGGTAGGT 1 CGTAGGGTAGGT 84665839 CTCGAGCTAG Statistics Matches: 32, Mismatches: 6, Indels: 2 0.80 0.15 0.05 Matches are distributed among these distances: 26 1 0.03 27 31 0.97 ACGTcount: A:0.26, C:0.09, G:0.36, T:0.29 Consensus pattern (27 bp): CGTAGGGTAGGTTGAGAACTAGGTATC Found at i:84666523 original size:3 final size:3 Alignment explanation
Indices: 84666515--84666570 Score: 51 Period size: 3 Copynumber: 18.7 Consensus size: 3 84666505 ATACAAGCAA * * * * * 84666515 ATG ATG ATG ATG GTG GT- AGTG GTG ATG ATG ACG ATG ATG ATG GTG 1 ATG ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG ATG ATG ATG 84666560 ATG ATG ATG AT 1 ATG ATG ATG AT 84666571 TCTAAAATGT Statistics Matches: 43, Mismatches: 8, Indels: 4 0.78 0.15 0.07 Matches are distributed among these distances: 3 43 1.00 ACGTcount: A:0.27, C:0.02, G:0.39, T:0.32 Consensus pattern (3 bp): ATG Found at i:84669890 original size:31 final size:31 Alignment explanation
Indices: 84669828--84669890 Score: 74 Period size: 31 Copynumber: 2.0 Consensus size: 31 84669818 TTAGGCCCAA * * * 84669828 AATTTGGCAATTATTTTCACATTAGGGTTTG 1 AATTTGACAATTATTCTCACATTAGGATTTG * 84669859 AATTTGACAATTATTCTCATATT-GAGATTTG 1 AATTTGACAATTATTCTCACATTAG-GATTTG 84669890 A 1 A 84669891 TTTTTAGGGC Statistics Matches: 27, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 30 1 0.04 31 26 0.96 ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44 Consensus pattern (31 bp): AATTTGACAATTATTCTCACATTAGGATTTG Found at i:84671124 original size:18 final size:18 Alignment explanation
Indices: 84671088--84671258 Score: 249 Period size: 18 Copynumber: 9.6 Consensus size: 18 84671078 AATTATATCT 84671088 TCTAAGATTGTATATCATA 1 TCTAAGATTGTA-ATCATA 84671107 TCTAAGATTGTAATCATA 1 TCTAAGATTGTAATCATA * 84671125 TCTAAGATTGCAATCATA 1 TCTAAGATTGTAATCATA 84671143 TCTAAGATTGT-ATCATA 1 TCTAAGATTGTAATCATA * * 84671160 TCTAAGATTGCAATTATA 1 TCTAAGATTGTAATCATA 84671178 TCTAAGATTGT-ATCATA 1 TCTAAGATTGTAATCATA * 84671195 TCTAAGATTGCAATCATA 1 TCTAAGATTGTAATCATA 84671213 TCTAAGATTGT-ATCATA 1 TCTAAGATTGTAATCATA * * 84671230 TCTAAGATTGCATATCACA 1 TCTAAGATTGTA-ATCATA 84671249 TCTAAGATTG 1 TCTAAGATTG 84671259 CATATCATTG Statistics Matches: 138, Mismatches: 10, Indels: 8 0.88 0.06 0.05 Matches are distributed among these distances: 17 47 0.34 18 64 0.46 19 27 0.20 ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38 Consensus pattern (18 bp): TCTAAGATTGTAATCATA Found at i:84671165 original size:35 final size:35 Alignment explanation
Indices: 84671088--84671258 Score: 288 Period size: 35 Copynumber: 4.8 Consensus size: 35 84671078 AATTATATCT * 84671088 TCTAAGATTGTATATCATATCTAAGATTGTAATCATA 1 TCTAAGATTGCA-ATCATATCTAAGATTGT-ATCATA 84671125 TCTAAGATTGCAATCATATCTAAGATTGTATCATA 1 TCTAAGATTGCAATCATATCTAAGATTGTATCATA * 84671160 TCTAAGATTGCAATTATATCTAAGATTGTATCATA 1 TCTAAGATTGCAATCATATCTAAGATTGTATCATA 84671195 TCTAAGATTGCAATCATATCTAAGATTGTATCATA 1 TCTAAGATTGCAATCATATCTAAGATTGTATCATA * 84671230 TCTAAGATTGCATATCACATCTAAGATTG 1 TCTAAGATTGCA-ATCATATCTAAGATTG 84671259 CATATCATTG Statistics Matches: 129, Mismatches: 4, Indels: 3 0.95 0.03 0.02 Matches are distributed among these distances: 35 86 0.67 36 32 0.25 37 11 0.09 ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38 Consensus pattern (35 bp): TCTAAGATTGCAATCATATCTAAGATTGTATCATA Found at i:84672209 original size:166 final size:166 Alignment explanation
Indices: 84671935--84672275 Score: 603 Period size: 166 Copynumber: 2.1 Consensus size: 166 84671925 ACACGTGAAA 84671935 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT 1 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT * * 84672000 TGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCT-TCGTCGAATATGGAGA 66 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCT-ATCGAATATGGAGA * * 84672064 CGCCAAACTTTGATTTGTTCTCTGACAATACAGAGAT 130 CGCCAAACTTCGATTTATTCTCTGACAATACAGAGAT * * 84672101 GCCAAATCAGCTGTGTCTTCGATTTGTTCCTTGTAAGCACAGGGATGCCAAACCATCTTGGATCT 1 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT 84672166 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC 66 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC * 84672231 GCCAAACTTCGATTTATTCTTTGACAATACAGAGAT 131 GCCAAACTTCGATTTATTCTCTGACAATACAGAGAT 84672267 GCCAAATCA 1 GCCAAATCA 84672276 TCTTAGACTT Statistics Matches: 167, Mismatches: 7, Indels: 2 0.95 0.04 0.01 Matches are distributed among these distances: 166 166 0.99 167 1 0.01 ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30 Consensus pattern (166 bp): GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC GCCAAACTTCGATTTATTCTCTGACAATACAGAGAT Found at i:84672413 original size:373 final size:372 Alignment explanation
Indices: 84671729--84672482 Score: 1276 Period size: 373 Copynumber: 2.0 Consensus size: 372 84671719 ACACGCGAAA 84671729 GCCAAATCAGCTATGTCTTCGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCT 1 GCCAAATCAGCTATGTCTTCGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCT * * * ** * * * * 84671794 GCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTTTGTCCTCCGTTGAATATGGAGACG 66 ACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCATCGAATATGGAGACG * 84671859 CCAAACTTCGATTTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTA 131 CCAAACTTCGATTTATTTTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTA 84671924 AACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACC 196 AACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACC * 84671989 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTTCGTCG 261 ATCTTGGATCTTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTTCGTCG ** * 84672054 AATATGGAGACGCCAAACTTTGATTTGTTCTCTGACAATACAGAGAT 326 AATATGGAGACGCCAAACTTCAATTTGTTCACTGACAATACAGAGAT * ** * * 84672101 GCCAAATCAGCTGTGTCTTCGATTTGTTCCTTGTAAGCACAGGGATGCCAAACCATCTTGGATCT 1 GCCAAATCAGCTATGTCTTCGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC- * * 84672166 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC 65 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCATCGAATATGGAGAC 84672231 GCCAAACTTCGATTTATTCTT-TGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACG 130 GCCAAACTTCGATTTATT-TTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACG * 84672295 TAAACACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAA 194 TAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA 84672360 CCATCTTGGATCTTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTTCGT 259 CCATCTTGGATCTTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTTCGT * 84672425 CGAATATGGAGCCGCCAAACTTCAATTTGTTCACTGACAATACAGAGAT 324 CGAATATGGAGACGCCAAACTTCAATTTGTTCACTGACAATACAGAGAT 84672474 GCCAAATCA 1 GCCAAATCA 84672483 TCTTAGATTT Statistics Matches: 357, Mismatches: 23, Indels: 3 0.93 0.06 0.01 Matches are distributed among these distances: 372 59 0.17 373 296 0.83 374 2 0.01 ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30 Consensus pattern (372 bp): GCCAAATCAGCTATGTCTTCGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCT ACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCATCGAATATGGAGACG CCAAACTTCGATTTATTTTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTA AACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACC ATCTTGGATCTTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTTCGTCG AATATGGAGACGCCAAACTTCAATTTGTTCACTGACAATACAGAGAT Found at i:84672465 original size:207 final size:207 Alignment explanation
Indices: 84672101--84672540 Score: 729 Period size: 207 Copynumber: 2.1 Consensus size: 207 84672091 ATACAGAGAT * * 84672101 GCCAAATCAGCTGTGTCTTCGATTTGTTCCTTGTAAGCACAGGGATGCCAAACCATCTTGGATCT 1 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT * 84672166 TACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC 66 TACTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC * ** 84672231 GCCAAACTTCGATTTATTCTTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGT 131 GCCAAACTTCAATTTATTCACTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGT * 84672296 AAACACGTGAAA 196 AAACACATGAAA * 84672308 GCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT 1 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT * * * 84672373 TGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCT-TCGTCGAATATGGAGC 66 TACTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTCT-ATCGAATATGGAGA * * * 84672437 CGCCAAACTTCAATTTGTTCACTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCG 130 CGCCAAACTTCAATTTATTCACTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACG * 84672502 TAAGCACATGAAA 195 TAAACACATGAAA 84672515 GCCAAATCAGCTATGTCTTCGATTTG 1 GCCAAATCAGCTATGTCTTCGATTTG 84672541 CTCTCCGTCG Statistics Matches: 216, Mismatches: 16, Indels: 2 0.92 0.07 0.01 Matches are distributed among these distances: 206 1 0.00 207 215 1.00 ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30 Consensus pattern (207 bp): GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT TACTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTCTATCGAATATGGAGAC GCCAAACTTCAATTTATTCACTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGT AAACACATGAAA Done.