Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 264 of 318
Found at i:84672790 original size:43 final size:42
Alignment explanation
Indices: 84672666--84672792 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 42
84672656 CTATACTTTA
* *
84672666 ACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGC--ATCTTCG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCGAAT-TTTG
* * * *
84672707 ATCTGCT-CCACTATTGCTTAGGGAGA-TAAGATC-CGTAATTTTG
1 ACCTGTTACC-CTACTGCTTAGGG-GATTAAG-GCGCG-AATTTTG
84672750 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCTGAATTTTG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGC-GAATTTTG
84672793 TAATTTTCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
40 2 0.03
41 22 0.33
42 5 0.08
43 32 0.48
44 5 0.08
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.32
Consensus pattern (42 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGCGAATTTTG
Found at i:84673716 original size:7 final size:7
Alignment explanation
Indices: 84673704--84673758 Score: 58
Period size: 7 Copynumber: 7.4 Consensus size: 7
84673694 GGCCTCTCTA
84673704 TTTTTCT
1 TTTTTCT
84673711 TTTTTCT
1 TTTTTCT
84673718 TTTTTCT
1 TTTTTCT
84673725 CTTTTT-T
1 -TTTTTCT
84673732 CTTTTTCTT
1 -TTTTTC-T
84673741 TTTTTCT
1 TTTTTCT
*
84673748 CTTTTTAT
1 -TTTTTCT
84673756 TTT
1 TTT
84673759 ATTTTTTGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
7 25 0.58
8 17 0.40
9 1 0.02
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:84673729 original size:16 final size:16
Alignment explanation
Indices: 84673704--84673753 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
84673694 GGCCTCTCTA
84673704 TTTT-TCTTTTTTCTT
1 TTTTCTCTTTTTTCTT
84673719 TTTTCTCTTTTTTC-T
1 TTTTCTCTTTTTTCTT
84673734 TTTTCT-TTTTTTCTCT
1 TTTTCTCTTTTTTCT-T
84673750 TTTT
1 TTTT
84673754 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.22
15 11 0.34
16 14 0.44
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTCTCTTTTTTCTT
Found at i:84673734 original size:23 final size:23
Alignment explanation
Indices: 84673698--84673753 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 23
84673688 CACCTTGGCC
84673698 TCTCTATTTTTCTTTTT-TCTTTTT
1 TCTCT-TTTTTCTTTTTCT-TTTTT
84673722 TCTCTTTTTTCTTTTTCTTTTTT
1 TCTCTTTTTTCTTTTTCTTTTTT
84673745 TCTCTTTTT
1 TCTCTTTTT
84673754 ATTTTATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 25 0.81
24 6 0.19
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (23 bp):
TCTCTTTTTTCTTTTTCTTTTTT
Found at i:84673758 original size:16 final size:16
Alignment explanation
Indices: 84673704--84673758 Score: 71
Period size: 15 Copynumber: 3.6 Consensus size: 16
84673694 GGCCTCTCTA
84673704 TTTTTC-TTTTTTCT-
1 TTTTTCTTTTTTTCTC
*
84673718 TTTTTCTCTTTTT-TC
1 TTTTTCTTTTTTTCTC
84673733 TTTTTCTTTTTTTCTC
1 TTTTTCTTTTTTTCTC
*
84673749 TTTTTATTTT
1 TTTTTCTTTT
84673759 ATTTTTTGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.20
15 17 0.49
16 11 0.31
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTTCTC
Found at i:84676807 original size:25 final size:25
Alignment explanation
Indices: 84676773--84676824 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
84676763 CTGGCAATCA
84676773 CATCATGTATTCCTCCGTGGACTAC
1 CATCATGTATTCCTCCGTGGACTAC
84676798 CATCATGTATTCCTCCGTGGACTAC
1 CATCATGTATTCCTCCGTGGACTAC
84676823 CA
1 CA
84676825 GCTTTCTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (25 bp):
CATCATGTATTCCTCCGTGGACTAC
Found at i:84679601 original size:17 final size:18
Alignment explanation
Indices: 84679548--84679673 Score: 175
Period size: 19 Copynumber: 6.9 Consensus size: 18
84679538 AATCATATCT
*
84679548 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
84679567 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
84679585 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
84679602 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
84679620 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
84679637 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
84679656 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
84679674 TGAAGATTAT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 33 0.34
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:84679606 original size:35 final size:35
Alignment explanation
Indices: 84679548--84679665 Score: 200
Period size: 35 Copynumber: 3.3 Consensus size: 35
84679538 AATCATATCT
84679548 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
84679585 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
84679620 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
84679656 TCTAAGATTG
1 TCTAAGATTG
84679666 CATATCATTG
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 54 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:84679681 original size:17 final size:18
Alignment explanation
Indices: 84679548--84679670 Score: 96
Period size: 17 Copynumber: 6.8 Consensus size: 18
84679538 AATCATATCT
* *
84679548 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
84679567 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
84679585 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
84679602 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
84679620 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
84679637 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
84679656 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
84679671 CATTGAAGAT
Statistics
Matches: 96, Mismatches: 2, Indels: 12
0.87 0.02 0.11
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 32 0.33
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:84680486 original size:19 final size:19
Alignment explanation
Indices: 84680449--84680486 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
84680439 CTTTAGGGCT
*
84680449 TTTTTTTAATTGATTCAAA
1 TTTTTTTAATTAATTCAAA
84680468 TTTTTTT-ATTAATTACAAA
1 TTTTTTTAATTAATT-CAAA
84680487 AATATCCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTTTTAATTAATTCAAA
Found at i:84681081 original size:14 final size:14
Alignment explanation
Indices: 84681058--84681132 Score: 90
Period size: 14 Copynumber: 5.7 Consensus size: 14
84681048 AACTAGAAAA
84681058 GAAAAAGAAAAAGG
1 GAAAAAGAAAAAGG
*
84681072 GAAAAGGAAAAA-G
1 GAAAAAGAAAAAGG
84681085 GAAAAAGGAAAAA-G
1 GAAAAA-GAAAAAGG
84681099 GAAAAAGAAAAA--
1 GAAAAAGAAAAAGG
84681111 GAAAAAGAAAAA--
1 GAAAAAGAAAAAGG
84681123 GAAAAAGAAA
1 GAAAAAGAAA
84681133 GAGAAAGAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
12 22 0.38
13 12 0.21
14 24 0.41
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
GAAAAAGAAAAAGG
Found at i:84681145 original size:6 final size:6
Alignment explanation
Indices: 84681054--84681144 Score: 110
Period size: 6 Copynumber: 14.3 Consensus size: 6
84681044 CTTAAACTAG
*
84681054 AAAAGA AAAAGA AAAAGGGA AAAGGA AAAAGGA AAAAGGA AAAAGGA AAAAGA
1 AAAAGA AAAAGA AAAA--GA AAAAGA AAAA-GA AAAA-GA AAAA-GA AAAAGA
* *
84681107 AAAAGA AAAAGA AAAAGA AAAAGA AAGAGA AAGAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AA
84681145 GTTTTGTGTT
Statistics
Matches: 79, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
6 54 0.68
7 20 0.25
8 5 0.06
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:84684277 original size:26 final size:26
Alignment explanation
Indices: 84684248--84684330 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
84684238 AATTTCATAA
84684248 TTAC-AATATGATATGACTTATCAAAT
1 TTACAAATATGATAT-ACTTATCAAAT
* * *
84684274 TTACAAAAAT-ATATAATT-TCAAAA
1 TTACAAATATGATATACTTATCAAAT
*
84684298 TTACAAATATGGTATAACTTATCAAAT
1 TTACAAATATGATAT-ACTTATCAAAT
84684325 TTACAA
1 TTACAA
84684331 CTATCAAATG
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
24 14 0.30
25 6 0.13
26 11 0.24
27 15 0.33
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (26 bp):
TTACAAATATGATATACTTATCAAAT
Found at i:84684300 original size:50 final size:51
Alignment explanation
Indices: 84684226--84684330 Score: 158
Period size: 51 Copynumber: 2.1 Consensus size: 51
84684216 AATTTCTTCA
* * *
84684226 ACAAATATATACAATTTCATAATTAC-AATATGATATGACTTATCAAATTT
1 ACAAAAATATACAATTTCAAAATTACAAATATGATATAACTTATCAAATTT
* *
84684276 ACAAAAATATATAATTTCAAAATTACAAATATGGTATAACTTATCAAATTT
1 ACAAAAATATACAATTTCAAAATTACAAATATGATATAACTTATCAAATTT
84684327 ACAA
1 ACAA
84684331 CTATCAAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 23 0.47
51 26 0.53
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.35
Consensus pattern (51 bp):
ACAAAAATATACAATTTCAAAATTACAAATATGATATAACTTATCAAATTT
Found at i:84690580 original size:127 final size:125
Alignment explanation
Indices: 84690370--84690715 Score: 410
Period size: 126 Copynumber: 2.7 Consensus size: 125
84690360 GCCGATTTTA
* * * *
84690370 TAAAACAAAGGTGATGTTTGATGCTTGGAAATTCGGGAAGTCGTGCCC-AACGTGCTGGGTTTCG
1 TAAAA-AAAGGCGATGTTT-ATGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCG
*
84690434 ATCTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCTAAAA-TT
64 ATTTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTC-AAAACTT
84690496 TAAAAGAAAGGCGATGTTTACTGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCG
1 TAAAA-AAAGGCGATGTTTA-TGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCG
* * *
84690561 ATTTTCTGTTTGTCCAAATAATCAAATATCCTTTTAAAATTTCGTCTACGTTTTCAAAACTT
64 ATTTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
* * * * * ** * ** *
84690623 CAAAACAAGGCAATGTTCTATGTTTGTAAATCCTAGAAATCGTGCCCTAACTTATTGGATTTCGA
1 TAAAAAAAGGCGATGTT-TATGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCGA
* * *
84690688 TTTTTCGTTGGACC-AATAAATCAAATAT
65 TTTTCCGTTTGTCCAAAT-AATCAAATAT
84690716 TCTTTTTGTA
Statistics
Matches: 191, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
125 4 0.02
126 112 0.59
127 75 0.39
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (125 bp):
TAAAAAAAGGCGATGTTTATGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCGAT
TTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
Found at i:84703614 original size:6 final size:6
Alignment explanation
Indices: 84703605--84703665 Score: 81
Period size: 6 Copynumber: 10.5 Consensus size: 6
84703595 AAGTTAAAGG
* *
84703605 AAAAAT AAAAAT TAAAAT AAAGAT AAAAAT -AAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
84703652 -AAAAT AAAATT AAA
1 AAAAAT AAAAAT AAA
84703666 CATCATCTTC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
5 10 0.21
6 38 0.79
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:84703626 original size:29 final size:29
Alignment explanation
Indices: 84703606--84703665 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
84703596 AGTTAAAGGA
*
84703606 AAAATAAAAATTAAAATAAAGATAAAAAT
1 AAAATAAAAATAAAAATAAAGATAAAAAT
*
84703635 AAAATAAAAATAAAAATAAA-ATAAAATT
1 AAAATAAAAATAAAAATAAAGATAAAAAT
84703663 AAA
1 AAA
84703666 CATCATCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 10 0.34
29 19 0.66
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (29 bp):
AAAATAAAAATAAAAATAAAGATAAAAAT
Found at i:84703637 original size:17 final size:17
Alignment explanation
Indices: 84703605--84703665 Score: 95
Period size: 17 Copynumber: 3.5 Consensus size: 17
84703595 AAGTTAAAGG
84703605 AAAAATAAAAATTAAAAT
1 AAAAATAAAAA-TAAAAT
*
84703623 AAAGATAAAAATAAAAT
1 AAAAATAAAAATAAAAT
84703640 AAAAATAAAAATAAAAT
1 AAAAATAAAAATAAAAT
*
84703657 AAAATTAAA
1 AAAAATAAA
84703666 CATCATCTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 30 0.75
18 10 0.25
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAAATAAAAATAAAAT
Found at i:84703665 original size:11 final size:11
Alignment explanation
Indices: 84703606--84703665 Score: 75
Period size: 11 Copynumber: 5.3 Consensus size: 11
84703596 AGTTAAAGGA
84703606 AAAATAAAAATT
1 AAAAT-AAAATT
*
84703618 AAAATAAAGATA
1 AAAATAAA-ATT
*
84703630 AAAATAAAATA
1 AAAATAAAATT
*
84703641 AAAATAAAAAT
1 AAAATAAAATT
84703652 AAAATAAAATT
1 AAAATAAAATT
84703663 AAA
1 AAA
84703666 CATCATCTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
11 28 0.65
12 15 0.35
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (11 bp):
AAAATAAAATT
Found at i:84710208 original size:44 final size:45
Alignment explanation
Indices: 84710160--84710273 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 45
84710150 AATTCAAAAC
* *
84710160 CTTATCTCCCTGAAGTTGCAGTGGACAAGGTTAAAG-T-GAC-AGGT
1 CTTATCTCCCTGAAGTTGCAGTGGACAAGATTAAAGATAG-CGA-AT
* *
84710204 CTTATCTCCCTGAAGTTGCAGTGGACCAGATTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGACAAGATTAAAGATAGCGAAT
*
84710249 CTTATTTCCCTGAAGTTGCAGTGGA
1 CTTATCTCCCTGAAGTTGCAGTGGA
84710274 ACAGATTGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 33 0.53
45 27 0.44
46 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGACAAGATTAAAGATAGCGAAT
Found at i:84710267 original size:45 final size:44
Alignment explanation
Indices: 84710160--84710284 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 44
84710150 AATTCAAAAC
* * * *
84710160 CTTATCTCCCTGAAGTTGCAGTGGACAAGGTTAAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGACCAGATTGAAGTGACAGAT
84710204 CTTATCTCCCTGAAGTTGCAGTGGACCAGATTGAAGAT-AGC-GAAT
1 CTTATCTCCCTGAAGTTGCAGTGGACCAGATTGAAG-TGA-CAG-AT
* *
84710249 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 CTTATCTCCCTGAAGTTGCAGTGGACCAGATTGAAG
84710285 CTATAAATAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
44 35 0.49
45 37 0.51
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGACCAGATTGAAGTGACAGAT
Found at i:84712932 original size:17 final size:17
Alignment explanation
Indices: 84712910--84712955 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
84712900 TTCAAGATAT
84712910 ATCAATCAAAATCATAA
1 ATCAATCAAAATCATAA
84712927 ATCAATCAAAATCATAA
1 ATCAATCAAAATCATAA
84712944 ATCAATCAAAAT
1 ATCAATCAAAAT
84712956 TTATCCTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.59, C:0.17, G:0.00, T:0.24
Consensus pattern (17 bp):
ATCAATCAAAATCATAA
Found at i:84712950 original size:11 final size:10
Alignment explanation
Indices: 84712910--84712955 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
84712900 TTCAAGATAT
84712910 ATCAATCAAA
1 ATCAATCAAA
84712920 ATC-AT--AA
1 ATCAATCAAA
84712927 ATCAATCAAA
1 ATCAATCAAA
84712937 ATC-AT--AA
1 ATCAATCAAA
84712944 ATCAATCAAA
1 ATCAATCAAA
84712954 AT
1 AT
84712956 TTATCCTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
7 10 0.33
8 4 0.13
9 4 0.13
10 12 0.40
ACGTcount: A:0.59, C:0.17, G:0.00, T:0.24
Consensus pattern (10 bp):
ATCAATCAAA
Found at i:84721570 original size:34 final size:34
Alignment explanation
Indices: 84721530--84721599 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
84721520 ATATAATAAA
84721530 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
1 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
84721564 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
1 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
84721598 GG
1 GG
84721600 GAAAAAAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (34 bp):
GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
Found at i:84723223 original size:127 final size:126
Alignment explanation
Indices: 84723010--84723331 Score: 414
Period size: 126 Copynumber: 2.5 Consensus size: 126
84723000 GCCGATTTTA
* * * *
84723010 TAAAACAAAGGTGATGTTTGATGCTTGGAAATTCGGGAAGTCGTGCCC-AACGTGCTGGGTTTCG
1 TAAAACAAAGGTGATGTTT-ATGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCG
* * *
84723074 ATCTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCTAAACTT
65 ATTTTCCATTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
*
84723136 TAAAACAAAGGTGATGTTTACTGTTTGAAAATTCGGGAAATCATGCCCTAATGTGCTGGGTTTCG
1 TAAAACAAAGGTGATGTTTA-TGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCG
* **
84723201 ATTTTCTATTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTTTACGTTTTCAAAACTT
65 ATTTTCCATTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
* * ** * * * ** *
84723263 CAAAAC-AATGCAATGTTCTATGTTTGTAAATCCGAGAAATCATGCCCTAACGTATTGGATTTCG
1 TAAAACAAAGGTGATGTT-TATGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCG
84723327 ATTTT
65 ATTTT
84723332 GCGTTGGACC
Statistics
Matches: 171, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
125 1 0.01
126 92 0.54
127 78 0.46
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
TAAAACAAAGGTGATGTTTATGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCGA
TTTTCCATTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
Found at i:84733695 original size:22 final size:22
Alignment explanation
Indices: 84733665--84733711 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
84733655 TATCAAATGT
*
84733665 TATGGATAAAGTATACATATAA
1 TATGAATAAAGTATACATATAA
84733687 TATGAATAAAGTATACATATAA
1 TATGAATAAAGTATACATATAA
84733709 TAT
1 TAT
84733712 TTAATCAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (22 bp):
TATGAATAAAGTATACATATAA
Found at i:84735670 original size:29 final size:29
Alignment explanation
Indices: 84735629--84735691 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
84735619 TATGGCCTAT
84735629 TAAG-TAATGAAGAGGCTGAGGAGGATGC
1 TAAGTTAATGAAGAGGCTGAGGAGGATGC
84735657 TAAGTTAATGAAGAGGCTGAGGAGGATGC
1 TAAGTTAATGAAGAGGCTGAGGAGGATGC
84735686 TAAGTT
1 TAAGTT
84735692 TGATTAATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.35, C:0.06, G:0.37, T:0.22
Consensus pattern (29 bp):
TAAGTTAATGAAGAGGCTGAGGAGGATGC
Found at i:84752737 original size:25 final size:24
Alignment explanation
Indices: 84752690--84752737 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
84752680 AATTTATGAA
* * *
84752690 ACTCTTAAAATGTATAAATCTTTT
1 ACTCTAAAAATGCATAAAACTTTT
84752714 ACTCTAAAATATGCATAAAACTTT
1 ACTCTAAAA-ATGCATAAAACTTT
84752738 GGATAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (24 bp):
ACTCTAAAAATGCATAAAACTTTT
Found at i:84754865 original size:25 final size:26
Alignment explanation
Indices: 84754837--84754891 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
84754827 AATTTAAATT
*
84754837 ATTTAAAAAATAA-TTTATTTTGATA
1 ATTTAAAAAATAAGTTTATTTTGAAA
* *
84754862 ATTTACAAGATAAGTTTATTTTGAAA
1 ATTTAAAAAATAAGTTTATTTTGAAA
84754888 ATTT
1 ATTT
84754892 TATCATTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (26 bp):
ATTTAAAAAATAAGTTTATTTTGAAA
Found at i:84758737 original size:21 final size:22
Alignment explanation
Indices: 84758711--84758767 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
84758701 TTAATGAATG
*
84758711 TAAGGGTTCACATA-AATATAT
1 TAAGGGTTCACATAGAATATAC
* * * *
84758732 TAAGGGATCACCTAGCATTTAC
1 TAAGGGTTCACATAGAATATAC
84758754 TAAGGGTTCACATA
1 TAAGGGTTCACATA
84758768 CAGGGTTTCG
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (22 bp):
TAAGGGTTCACATAGAATATAC
Found at i:84762225 original size:12 final size:12
Alignment explanation
Indices: 84762200--84762250 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
84762190 TATTTCAAAT
*
84762200 TTAGATATTATTA
1 TTAGTTATT-TTA
84762213 TTA-TTATTGTTA
1 TTAGTTATT-TTA
*
84762225 TTAGTCATTTTA
1 TTAGTTATTTTA
84762237 TTAGTTATTTTA
1 TTAGTTATTTTA
84762249 TT
1 TT
84762251 TTATTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
12 26 0.79
13 7 0.21
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (12 bp):
TTAGTTATTTTA
Found at i:84765794 original size:49 final size:49
Alignment explanation
Indices: 84765687--84766003 Score: 282
Period size: 49 Copynumber: 6.7 Consensus size: 49
84765677 GGTACGATAT
* * * * * *
84765687 CGATGCCATGTTCCAAACATGGTCTTACACT-G-GCTCACATATCTAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATATCGAAGC
* *
84765735 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAAGC
* * * ** *
84765784 CGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAAGC
** * * *
84765833 CGATGCCATGTCCCAGACAGGTCTT-C-C-A-CTGACACATGTC-AAGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAAGC
* *
84765877 CGATGCCATGTCCCAGACAGGTCTTACACTGGCT-TGCATATCTC-AAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATATATCGAA-GC
* * * *
84765926 TGATG-CATGTCTCAGACATGTCTTACACTAGCTCTCATA-AT-GTAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAAGC
*
84765972 CGATG-CATGTCCCAGACATGTCTTACACTAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGC
84766004 ACACATATCA
Statistics
Matches: 221, Mismatches: 38, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
44 27 0.12
45 8 0.04
46 33 0.15
47 14 0.06
48 57 0.26
49 82 0.37
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAAGC
Found at i:84765931 original size:93 final size:93
Alignment explanation
Indices: 84765686--84766000 Score: 268
Period size: 93 Copynumber: 3.3 Consensus size: 93
84765676 GGGTACGATA
* * * *
84765686 TCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCT-AAGTC-GATGCCATGTCCC
1 TCGATGCCATGTCCCAGACA-GGTCTTACACTGGCT-TCATATCTCAAGGCTGATGCCATGTCCC
** *
84765749 AGACAGGTCTTACACTAACTTTCATATATCGAAG
64 AGACAGGTCTT-C-C--ACTGACACATATCGAAG
* * * * *
84765783 CCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATC--GGTGTCGATGCCATGTCC
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGGCT-TCATATCTCAAGG-CT-GATGCCATGTCC
*
84765846 CAGACAGGTCTTCCACTGACACATGTC-AAG
63 CAGACAGGTCTTCCACTGACACATATCGAAG
*
84765876 TCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTGCATATCTCAAGGCTGATG-CATGTCTCA
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGGCTT-CATATCTCAAGGCTGATGCCATGTCCCA
* * * * *
84765940 GACATGTCTTACACTAGCTCTCATAAT-GTAG
65 GACAGGTCTTCCACT-G-ACACAT-ATCGAAG
* *
84765971 CCGATG-CATGTCCCAGACATGTCTTACACT
1 TCGATGCCATGTCCCAGACAGGTCTTACACT
84766001 AGCACACATA
Statistics
Matches: 180, Mismatches: 27, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
92 22 0.12
93 47 0.26
94 37 0.21
95 11 0.06
96 22 0.12
97 17 0.09
98 24 0.13
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
TCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTCATATCTCAAGGCTGATGCCATGTCCCAG
ACAGGTCTTCCACTGACACATATCGAAG
Found at i:84766688 original size:20 final size:20
Alignment explanation
Indices: 84766663--84766701 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
84766653 AAAATTTCAA
84766663 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
84766683 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
84766702 AATAACCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:84771863 original size:10 final size:10
Alignment explanation
Indices: 84771848--84771874 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
84771838 ACTTCACTTG
84771848 AAAAAAAATA
1 AAAAAAAATA
84771858 AAAAAAAATA
1 AAAAAAAATA
84771868 AAAAAAA
1 AAAAAAA
84771875 GGAGAGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:84772728 original size:49 final size:50
Alignment explanation
Indices: 84772648--84772880 Score: 254
Period size: 49 Copynumber: 4.7 Consensus size: 50
84772638 ACCTATTGTG
*
84772648 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
84772698 -GGTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * * **
84772748 CGATCACGTGTGTGGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
84772798 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTATACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
84772848 -GGCCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
84772881 TATGTACCAG
Statistics
Matches: 149, Mismatches: 32, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 69 0.46
50 44 0.30
51 36 0.24
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:84772923 original size:150 final size:150
Alignment explanation
Indices: 84772648--84772926 Score: 380
Period size: 150 Copynumber: 1.9 Consensus size: 150
84772638 ACCTATTGTG
* * *
84772648 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTATACCGGATAATTGGCCGCATGTGTAGT
* * * ** ** *
84772713 TCTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTGGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATACGTACCAGATAACTTCGATCACAAGTGTGAAAATAAGTGCAGGCT
84772778 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
*
84772798 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTATACTGGATAATTGGCCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTATACCGGATAATTGGCCGCATGTGTAGT
* * * * * *
84772863 ACTAAGTGTAGGCTACTATATGTACCAGATAGCTTTG-GCTACAAGTGTGAAAATATGTGCAGGC
66 ACTAAGTGCAGGCTACTATACGTACCAGATAACTTCGATC-ACAAGTGTGAAAATAAGTGCAGGC
84772927 AACTGAGTAT
Statistics
Matches: 110, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
149 1 0.01
150 109 0.99
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTATACCGGATAATTGGCCGCATGTGTAGT
ACTAAGTGCAGGCTACTATACGTACCAGATAACTTCGATCACAAGTGTGAAAATAAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:84775079 original size:44 final size:44
Alignment explanation
Indices: 84775011--84775912 Score: 419
Period size: 44 Copynumber: 19.7 Consensus size: 44
84775001 GTCATCATGG
* * *
84775011 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * * *
84775055 CAAATCTTATATCCCTAAAATTGCAATAGAGTAGATTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
** * * * * *
84775099 GCAAATCTTATCTTTCTAAAATTGTAGTAGAGCAGATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * * * * *
84775144 TAAACCTTATCTCCTTGAAATTACAGTGTAACA-AGTCGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCTA
* * * *
84775188 CAAGTCTTATCTCCCTGAAGTAGCAGTGGAGTAGATTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * *
84775232 GCGAAA-CTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATTA
1 -C-AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG---C----TA
* * *
84775284 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * **
84775328 CAAATCTTATCTCCCTGAAGTTGTAGTAGAGTAAATTTAAAATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * *
84775372 GCAAATCTTATCTCTCTAAAGTTGCAATAGAGCAGATTGAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
84775417 CAAATCTTATATCTCTAAAGTTGTAGTGGAGTAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
84775461 CTAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAAACGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * * * * *
84775505 TAAGTCCTATAC-CACTAAAGTTGCAGTAGG-TCGGATTAAATCTA
1 CAAATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTGAAGCTA
* * **
84775549 CCATAGCAAGTCTTATCTCCCTGAAGCTGCAGTGGAATAGACTAAAGCTACAAGCTA
1 -C--A--AA-TCTTATCTCCCTGAAGTTGCAGTGG---AG-C---AGATTGAAGCTA
* *
84775606 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
** * * * * *
84775650 TTAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * ** * *
84775694 CAAGTTATGAGTCTTATTTCCTTAAAGTTGCAGTGGAATAAATTAAAGCTACAAGTTA
1 C-A---A--A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAGCTA
* * * ** * * *
84775752 CAAATCTTATCTCCTTAAAGTTGTAGTGGAATAGGTTGAAGATG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * * * *
84775796 CAAACCTTATTTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * *
84775840 CAAATATTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
**
84775884 CAAATCTTATAC-CTTTGAAGTTGCAGTGG
1 CAAATCTTAT-CTCCCTGAAGTTGCAGTGG
84775913 GTTGGAATGA
Statistics
Matches: 652, Mismatches: 160, Indels: 92
0.72 0.18 0.10
Matches are distributed among these distances:
43 1 0.00
44 375 0.58
45 107 0.16
46 2 0.00
47 2 0.00
48 4 0.01
49 4 0.01
50 21 0.03
51 113 0.17
52 5 0.01
54 3 0.00
56 1 0.00
57 8 0.01
58 6 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
Found at i:84775693 original size:95 final size:95
Alignment explanation
Indices: 84775559--84775730 Score: 227
Period size: 95 Copynumber: 1.8 Consensus size: 95
84775549 CCATAGCAAG
* * *
84775559 TCTTATCTCCCTGAAGCTGCAGTGGAATAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTGA
1 TCTTATCTCCCTAAAGCTGCAGTGGAACAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTAA
84775624 AGTTGCAGTGGAGCAGATTGAAGATGTTAA
66 AGTTGCAGTGGAGCAGATTGAAGATGTTAA
* * * * * ** * * *
84775654 TCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTATGAGTCTTATTTCCTTAA
1 TCTTATCTCCCTAAAGCTGCAGTGGAACAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTAA
84775719 AGTTGCAGTGGA
66 AGTTGCAGTGGA
84775731 ATAAATTAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
95 64 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (95 bp):
TCTTATCTCCCTAAAGCTGCAGTGGAACAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTAA
AGTTGCAGTGGAGCAGATTGAAGATGTTAA
Found at i:84778629 original size:24 final size:24
Alignment explanation
Indices: 84778601--84778656 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
84778591 GCCATACGGG
* *
84778601 CGTGTTGTCGCCCGTGTGGTAAGT
1 CGTGTGGTCGCCCATGTGGTAAGT
*
84778625 CGTGTGGTCGCCCATGTGGTAGGT
1 CGTGTGGTCGCCCATGTGGTAAGT
84778649 CGTGTGGT
1 CGTGTGGT
84778657 AGTACACGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.07, C:0.20, G:0.41, T:0.32
Consensus pattern (24 bp):
CGTGTGGTCGCCCATGTGGTAAGT
Found at i:84786342 original size:53 final size:53
Alignment explanation
Indices: 84786262--84786362 Score: 202
Period size: 53 Copynumber: 1.9 Consensus size: 53
84786252 GTACGAACTA
84786262 ATTAAATGTGTGAATAGAATTAGGTAAGTGAAAGATATGTAAATGTTCATCAC
1 ATTAAATGTGTGAATAGAATTAGGTAAGTGAAAGATATGTAAATGTTCATCAC
84786315 ATTAAATGTGTGAATAGAATTAGGTAAGTGAAAGATATGTAAATGTTC
1 ATTAAATGTGTGAATAGAATTAGGTAAGTGAAAGATATGTAAATGTTC
84786363 CTCTGTGATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.33
Consensus pattern (53 bp):
ATTAAATGTGTGAATAGAATTAGGTAAGTGAAAGATATGTAAATGTTCATCAC
Found at i:84786471 original size:28 final size:28
Alignment explanation
Indices: 84786431--84786484 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
84786421 TGGAAATAGG
84786431 TGTAAAACCACGAGGTTGAGACCCATAA
1 TGTAAAACCACGAGGTTGAGACCCATAA
84786459 TGTAAAACCACGAGGTTGAGACCCAT
1 TGTAAAACCACGAGGTTGAGACCCAT
84786485 GGGATTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (28 bp):
TGTAAAACCACGAGGTTGAGACCCATAA
Found at i:84789374 original size:12 final size:12
Alignment explanation
Indices: 84789357--84789395 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
84789347 ACTGAAGGAG
84789357 CTTAATTTTTCA
1 CTTAATTTTTCA
**
84789369 CTTAATTTTTTG
1 CTTAATTTTTCA
84789381 CTTAATTTTTCA
1 CTTAATTTTTCA
84789393 CTT
1 CTT
84789396 TTAGTTCCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.03, T:0.62
Consensus pattern (12 bp):
CTTAATTTTTCA
Found at i:84796198 original size:21 final size:22
Alignment explanation
Indices: 84796159--84796204 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
84796149 GTACTTTTTA
* *
84796159 TTTAATTTTCCTTTATTATTAT
1 TTTAATTTTACTTTATTATAAT
*
84796181 TTTAATTTTAGTTT-TTATAAT
1 TTTAATTTTACTTTATTATAAT
84796202 TTT
1 TTT
84796205 TATTGAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTAATTTTACTTTATTATAAT
Found at i:84799722 original size:17 final size:18
Alignment explanation
Indices: 84799700--84799739 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
84799690 ACTCTTACTC
*
84799700 TTTATTTATTTT-TCATG
1 TTTATTTATTTTATCAAG
*
84799717 TTTATTTCTTTTATCAAG
1 TTTATTTATTTTATCAAG
84799735 TTTAT
1 TTTAT
84799740 GTTGTTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTATTTATTTTATCAAG
Found at i:84804213 original size:138 final size:137
Alignment explanation
Indices: 84803990--84804255 Score: 406
Period size: 138 Copynumber: 1.9 Consensus size: 137
84803980 ACTTTCTGCC
** * * *
84803990 TATTCATTACAACATTATTTAGTGTGAAGTCATTTCACTAAAGTATCATGATTGAGCTCTCCATT
1 TATTCATTACAACATTATTTAGTACGAAGTCATTCCACTAAAATATCATGATTGAACTCTCCATT
* * * *
84804055 ATTATATCCTATCACAAAACTGCTTATCAACTTCTCATCCAATGACTTTGTAATTGTATTACCCT
66 ATTATATACTATCACAAAACTGCTAATCAACTTCTCACCCAATGACTTTGTAAGTGTATTACCCT
84804120 AATAGGA
131 AATAGGA
* *
84804127 TATTCATTACAATATTATTTAGTCACGAAGTTATTCCACTAAAATATCATGATTGAACTCTCCAT
1 TATTCATTACAACATTATTTAGT-ACGAAGTCATTCCACTAAAATATCATGATTGAACTCTCCAT
* *
84804192 TATTATATACTATCACGAAACTGCTAATCAACTTCTCACCCAATGACTTTGTAAGTGTGTTACC
65 TATTATATACTATCACAAAACTGCTAATCAACTTCTCACCCAATGACTTTGTAAGTGTATTACC
84804256 ATCATAGTAT
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
137 22 0.19
138 93 0.81
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (137 bp):
TATTCATTACAACATTATTTAGTACGAAGTCATTCCACTAAAATATCATGATTGAACTCTCCATT
ATTATATACTATCACAAAACTGCTAATCAACTTCTCACCCAATGACTTTGTAAGTGTATTACCCT
AATAGGA
Found at i:84804530 original size:17 final size:16
Alignment explanation
Indices: 84804498--84804559 Score: 63
Period size: 16 Copynumber: 3.7 Consensus size: 16
84804488 ATTAACTTTT
84804498 TAAAAAATTTTAAAAA
1 TAAAAAATTTTAAAAA
*
84804514 TAAAAAATACTTTAAAAT
1 TAAAAAAT--TTTAAAAA
*
84804532 TATAAAAATTATAAAAA
1 TA-AAAAATTTTAAAAA
84804549 -AAAAACATTTT
1 TAAAAA-ATTTT
84804560 TATATTTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 4 0.11
16 13 0.34
17 6 0.16
18 9 0.24
19 6 0.16
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAAAATTTTAAAAA
Found at i:84810677 original size:27 final size:27
Alignment explanation
Indices: 84810647--84810700 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
84810637 AAACCCTAGG
84810647 AAAGAGAAAAACATTCAAGCAAGCTTT
1 AAAGAGAAAAACATTCAAGCAAGCTTT
84810674 AAAGAGAAAAACATTCAAGCAAGCTTT
1 AAAGAGAAAAACATTCAAGCAAGCTTT
84810701 CTTGGCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19
Consensus pattern (27 bp):
AAAGAGAAAAACATTCAAGCAAGCTTT
Found at i:84811152 original size:21 final size:21
Alignment explanation
Indices: 84811128--84811167 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
84811118 ACCTAAGATG
* *
84811128 TAAATTGAATTCAATTGAGTA
1 TAAAGTGAATTAAATTGAGTA
84811149 TAAAGTGAATTAAATTGAG
1 TAAAGTGAATTAAATTGAG
84811168 GCTAAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.17, T:0.35
Consensus pattern (21 bp):
TAAAGTGAATTAAATTGAGTA
Found at i:84811173 original size:21 final size:21
Alignment explanation
Indices: 84811128--84811173 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
84811118 ACCTAAGATG
* * *
84811128 TAAATTGAATTCAATTGAGTA
1 TAAAGTGAATTAAATTGAGGA
*
84811149 TAAAGTGAATTAAATTGAGGC
1 TAAAGTGAATTAAATTGAGGA
84811170 TAAA
1 TAAA
84811174 TTCATTTATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (21 bp):
TAAAGTGAATTAAATTGAGGA
Found at i:84828959 original size:19 final size:19
Alignment explanation
Indices: 84828935--84828972 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
84828925 TCCCAACTAC
84828935 CTCGAAAATCAATAATACA
1 CTCGAAAATCAATAATACA
84828954 CTCGAAAATCAATAATACA
1 CTCGAAAATCAATAATACA
84828973 ACTTCTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.05, T:0.21
Consensus pattern (19 bp):
CTCGAAAATCAATAATACA
Found at i:84844725 original size:14 final size:14
Alignment explanation
Indices: 84844706--84844736 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
84844696 CTGGCTAGCA
84844706 CCTATGCCCGAAGC
1 CCTATGCCCGAAGC
84844720 CCTATGCCCGAAGC
1 CCTATGCCCGAAGC
84844734 CCT
1 CCT
84844737 CTGTCCATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.45, G:0.19, T:0.16
Consensus pattern (14 bp):
CCTATGCCCGAAGC
Found at i:84849604 original size:37 final size:38
Alignment explanation
Indices: 84849487--84849662 Score: 169
Period size: 38 Copynumber: 4.7 Consensus size: 38
84849477 GTAAATTTTC
* **
84849487 AATA-CACCGGCATAAAGCCTGCTAGACACGGAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGACACATAGCCCG
* ** *
84849524 AATAACACCGAAACAAAGCCTGCTAGACACATAGCCCA
1 AATATCACCGGCACAAAGCCTGCTAGACACATAGCCCG
* *
84849562 AATATCACCGGCACAAAGCCTGCAAGA-AAATAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGACACATAGCCCG
* * * *
84849599 AATATCACTGGCATAAAGCCTGCTAGGCACA-AGGCTCG
1 AATATCACCGGCACAAAGCCTGCTAGACACATA-GCCCG
* * * *
84849637 AATAACACCGGTATAATGCCTGCTAG
1 AATATCACCGGCACAAAGCCTGCTAG
84849663 GCTAAATAAC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
37 36 0.32
38 78 0.68
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (38 bp):
AATATCACCGGCACAAAGCCTGCTAGACACATAGCCCG
Found at i:84850295 original size:10 final size:10
Alignment explanation
Indices: 84850280--84850316 Score: 74
Period size: 10 Copynumber: 3.7 Consensus size: 10
84850270 AAGGTACAGG
84850280 CTAGTTGGAC
1 CTAGTTGGAC
84850290 CTAGTTGGAC
1 CTAGTTGGAC
84850300 CTAGTTGGAC
1 CTAGTTGGAC
84850310 CTAGTTG
1 CTAGTTG
84850317 TAACGATCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (10 bp):
CTAGTTGGAC
Found at i:84853372 original size:26 final size:23
Alignment explanation
Indices: 84853320--84853364 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
84853310 TAATATTTTA
*
84853320 TATTTTTATTTAAAAAATGATGT
1 TATTTTTATTTAAAAAATAATGT
84853343 TATTTTTATTTAAAAAATAATG
1 TATTTTTATTTAAAAAATAATG
84853365 GAATTATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (23 bp):
TATTTTTATTTAAAAAATAATGT
Found at i:84854783 original size:34 final size:34
Alignment explanation
Indices: 84854739--84854852 Score: 122
Period size: 34 Copynumber: 3.4 Consensus size: 34
84854729 ATCAAATACA
* *
84854739 TGTTAAAAGCATGATTATTGCTACCGTATTGATT
1 TGTTATAAGCATGATTATTGCTACTGTATTGATT
* * * * *
84854773 TGTTATAAGCATAATAATTGCTACTATATCGACT
1 TGTTATAAGCATGATTATTGCTACTGTATTGATT
* *
84854807 TGTTATAAGCATG-TTATTGCTATTGTATTGATC
1 TGTTATAAGCATGATTATTGCTACTGTATTGATT
* *
84854840 TATTGTAAGCATG
1 TGTTATAAGCATG
84854853 TCATGTTGCA
Statistics
Matches: 64, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
33 25 0.39
34 39 0.61
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (34 bp):
TGTTATAAGCATGATTATTGCTACTGTATTGATT
Found at i:84854958 original size:48 final size:48
Alignment explanation
Indices: 84854896--84855070 Score: 230
Period size: 48 Copynumber: 3.7 Consensus size: 48
84854886 AAGGAGGAAA
*
84854896 TAGTCGGTAGTTTATCTGCATGACCAGTGGTTCATCCACAACGTATTT
1 TAGTTGGTAGTTTATCTGCATGACCAGTGGTTCATCCACAACGTATTT
* * * * *
84854944 TAGTTGGCAATTTATCTACATGACCAGTGGTTCGTCCACAATGTATTT
1 TAGTTGGTAGTTTATCTGCATGACCAGTGGTTCATCCACAACGTATTT
* *
84854992 TAGTTGGTAGTTTGTC-G--TGCCCAGTGGTTCATCCACAACGTATTT
1 TAGTTGGTAGTTTATCTGCATGACCAGTGGTTCATCCACAACGTATTT
* * *
84855037 TAGTTAGTAGTTTATCTGCACGACCAGTAGTTCA
1 TAGTTGGTAGTTTATCTGCATGACCAGTGGTTCA
84855071 CCTATAATGT
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
45 39 0.37
46 1 0.01
48 66 0.62
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (48 bp):
TAGTTGGTAGTTTATCTGCATGACCAGTGGTTCATCCACAACGTATTT
Found at i:84860403 original size:40 final size:40
Alignment explanation
Indices: 84860348--84860426 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
84860338 ACACCCCATG
* *
84860348 TGGGGATAAAATCGACCTACCCAGCCCTACATACCAAGTA
1 TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGTA
* *
84860388 TGGGGATAAAATCGACCCATCTAGCCCTACACACCAAGT
1 TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGT
84860427 GGTACTGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAGCCCTACACACCAAGTA
Found at i:84869013 original size:12 final size:12
Alignment explanation
Indices: 84868996--84869025 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
84868986 ACGTGTGTTG
84868996 CACACGACCTAC
1 CACACGACCTAC
*
84869008 CACACGGCCTAC
1 CACACGACCTAC
84869020 CACACG
1 CACACG
84869026 CCTGTATGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.50, G:0.13, T:0.07
Consensus pattern (12 bp):
CACACGACCTAC
Found at i:84870661 original size:20 final size:20
Alignment explanation
Indices: 84870636--84870676 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84870626 CAATTAAATC
84870636 ATATAATATGAAATAGAATA
1 ATATAATATGAAATAGAATA
84870656 ATATAATATGAAATAGAATA
1 ATATAATATGAAATAGAATA
84870676 A
1 A
84870677 GGTAGGGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (20 bp):
ATATAATATGAAATAGAATA
Found at i:84873124 original size:21 final size:21
Alignment explanation
Indices: 84873100--84873143 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
84873090 CATTGCAAAA
84873100 TTTGGTTGCTAATGCCCATTT
1 TTTGGTTGCTAATGCCCATTT
84873121 TTTGGTTGCTAATGCCCATTT
1 TTTGGTTGCTAATGCCCATTT
84873142 TT
1 TT
84873144 CCAACTCGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.18, G:0.18, T:0.50
Consensus pattern (21 bp):
TTTGGTTGCTAATGCCCATTT
Found at i:84874257 original size:33 final size:33
Alignment explanation
Indices: 84874205--84874287 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
84874195 GTAATGCAAC
* * *
84874205 ATAACATGCTTACAACAAATCAATACGGTAGCA
1 ATAACATGCTTATAACAAATCAATACAGTAACA
* **
84874238 ATAACATGCTTATAGCAAATTGATACAGTAACA
1 ATAACATGCTTATAACAAATCAATACAGTAACA
*
84874271 ATTATCATGCTTATAAC
1 A-TAACATGCTTATAAC
84874288 GGATCATCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 28 0.68
34 13 0.32
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (33 bp):
ATAACATGCTTATAACAAATCAATACAGTAACA
Found at i:84875858 original size:39 final size:39
Alignment explanation
Indices: 84875804--84875878 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
84875794 ATATCAAATA
* *
84875804 TAGGATTATGGTAGACCCATCTATCC-ACTACACACCAAT
1 TAGGATTATGATAGACCCATCCATCCAAC-ACACACCAAT
* *
84875843 TAGGGTTATGATAGACCTATCCATCCAACACACACC
1 TAGGATTATGATAGACCCATCCATCCAACACACACC
84875879 TAATAAATGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 29 0.94
40 2 0.06
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (39 bp):
TAGGATTATGATAGACCCATCCATCCAACACACACCAAT
Found at i:84880163 original size:24 final size:24
Alignment explanation
Indices: 84880127--84880196 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 24
84880117 GGGTCAACAT
*
84880127 TGGCACTAAGTGTGCAGATTTGAA
1 TGGCACTATGTGTGCAGATTTGAA
* *
84880151 TGGCACTATGTGTGCGGAATTGAA
1 TGGCACTATGTGTGCAGATTTGAA
*
84880175 TGGCACTATGTGTGCTGATTTG
1 TGGCACTATGTGTGCAGATTTG
84880197 GATGTCAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCAGATTTGAA
Found at i:84887828 original size:24 final size:24
Alignment explanation
Indices: 84887792--84887854 Score: 92
Period size: 24 Copynumber: 2.6 Consensus size: 24
84887782 GGGTCAACAT
*
84887792 TGGCACTAAGTGTG-GAAATTTGAA
1 TGGCACTATGTGTGCGAAA-TTGAA
*
84887816 TGGCACTATGTGTGCGGAATTGAA
1 TGGCACTATGTGTGCGAAATTGAA
84887840 TGGCACTATGTGTGC
1 TGGCACTATGTGTGC
84887855 TGATTTGGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 33 0.92
25 3 0.08
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.30
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAAATTGAA
Found at i:84889771 original size:79 final size:81
Alignment explanation
Indices: 84889660--84889844 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
84889650 GCTACTCGTT
* * *
84889660 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
84889723 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
84889740 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
84889803 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
84889820 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
84889845 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:84889844 original size:40 final size:40
Alignment explanation
Indices: 84889641--84889844 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
84889631 CAGAATTTAA
** * *
84889641 CCGGATATAGCT-ACTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
84889681 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84889721 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84889760 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84889800 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84889840 CCGGA
1 CCGGA
84889845 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84897939 original size:79 final size:77
Alignment explanation
Indices: 84897837--84898060 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 77
84897827 GCTACTCGTT
* * *
84897837 CAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAA-TGCCTTCGGGACTTAGCCCGG
*
84897902 ATTTAGTAACTCGCA
63 AATTAGTAACTCGCA
* *
84897917 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGGA
*
84897981 ATTAGTATCTCGCA
64 ATTAGTAACTCGCA
* * * * * *
84897995 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
84898060 A
63 A
84898061 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 36 0.29
79 55 0.45
80 32 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAAT
TAGTAACTCGCA
Found at i:84897954 original size:39 final size:40
Alignment explanation
Indices: 84897837--84898060 Score: 262
Period size: 39 Copynumber: 5.7 Consensus size: 40
84897827 GCTACTCGTT
* * *
84897837 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
84897877 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
84897917 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
84897956 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
84897995 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
84898036 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84898061 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 74 0.45
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:84898060 original size:40 final size:40
Alignment explanation
Indices: 84897818--84898060 Score: 229
Period size: 40 Copynumber: 6.1 Consensus size: 40
84897808 CGGAATTTAA
** * *
84897818 CCGGATATAGCTAC-TCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * *
84897858 CCGGTTATAGTAAC-TCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
84897898 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
84897937 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGACTTAGC
*
84897976 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
84898016 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
84898056 CCGGA
1 CCGGA
84898061 CATCATTCAA
Statistics
Matches: 177, Mismatches: 16, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 70 0.40
40 90 0.51
41 13 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84912994 original size:12 final size:12
Alignment explanation
Indices: 84912977--84913002 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84912967 GGCCAAATAA
84912977 ATAAATATATAT
1 ATAAATATATAT
84912989 ATAAATATATAT
1 ATAAATATATAT
84913001 AT
1 AT
84913003 TTGACACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAAATATATAT
Found at i:84915682 original size:16 final size:15
Alignment explanation
Indices: 84915663--84915701 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 15
84915653 CCAACCTTAA
84915663 TTTTATATTTATAATT
1 TTTTATATTTA-AATT
84915679 TTTTAATATTTAAATT
1 TTTT-ATATTTAAATT
84915695 TATTTAT
1 T-TTTAT
84915702 TATTCATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTATATTTAAATT
Found at i:84915689 original size:17 final size:16
Alignment explanation
Indices: 84915663--84915705 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
84915653 CCAACCTTAA
84915663 TTTT-ATATTTATAATT
1 TTTTAATATTTA-AATT
84915679 TTTTAATATTTAAATT
1 TTTTAATATTTAAATT
*
84915695 TATTTATTATT
1 T-TTTAATATT
84915706 CATGTTATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTAATATTTAAATT
Found at i:84930088 original size:40 final size:40
Alignment explanation
Indices: 84930043--84930122 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
84930033 TGGTTGAAAG
84930043 ATTGTATTTTAAATTGCTTGCTATTCAAGGTGTGCAGGGT
1 ATTGTATTTTAAATTGCTTGCTATTCAAGGTGTGCAGGGT
* *
84930083 ATTGTATTTTAAATTGTTTGCTATTTAAGGTGTGCAGGGT
1 ATTGTATTTTAAATTGCTTGCTATTCAAGGTGTGCAGGGT
84930123 TGCACACGGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.23, C:0.07, G:0.25, T:0.45
Consensus pattern (40 bp):
ATTGTATTTTAAATTGCTTGCTATTCAAGGTGTGCAGGGT
Found at i:84932331 original size:14 final size:15
Alignment explanation
Indices: 84932297--84932332 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
84932287 TTCCCATTTC
84932297 TTTA-TTTAGCTTTA
1 TTTATTTTAGCTTTA
84932311 TTT-TTTTAG-TTTA
1 TTTATTTTAGCTTTA
84932324 TTTATTTTA
1 TTTATTTTA
84932333 TCATGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (15 bp):
TTTATTTTAGCTTTA
Found at i:84932358 original size:19 final size:19
Alignment explanation
Indices: 84932336--84932374 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
84932326 TATTTTATCA
84932336 TGGGCCATTTACT-CTTTTT
1 TGGGCCATTT-CTCCTTTTT
*
84932355 TGGGCCGTTTCTCCTTTTT
1 TGGGCCATTTCTCCTTTTT
84932374 T
1 T
84932375 ATTAATTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.05, C:0.23, G:0.18, T:0.54
Consensus pattern (19 bp):
TGGGCCATTTCTCCTTTTT
Found at i:84933323 original size:13 final size:12
Alignment explanation
Indices: 84933299--84933332 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
84933289 TGTTTAATTA
84933299 TATTAAGATAAT
1 TATTAAGATAAT
84933311 TATTAAGGATAAT
1 TATTAA-GATAAT
*
84933324 TATTTAGAT
1 TATTAAGAT
84933333 TTAAATTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (12 bp):
TATTAAGATAAT
Found at i:84933359 original size:10 final size:10
Alignment explanation
Indices: 84933344--84933405 Score: 61
Period size: 10 Copynumber: 6.1 Consensus size: 10
84933334 TAAATTTAGG
84933344 ATTTATTTTT
1 ATTTATTTTT
*
84933354 ATTTATCTTT
1 ATTTATTTTT
* *
84933364 AATTATGTTT
1 ATTTATTTTT
* *
84933374 AATTATCTTT
1 ATTTATTTTT
*
84933384 ATTTATTTGT
1 ATTTATTTTT
84933394 ATTTATCTTTT
1 ATTTAT-TTTT
84933405 A
1 A
84933406 GAATTTAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 39 0.91
11 4 0.09
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:84933374 original size:20 final size:19
Alignment explanation
Indices: 84933350--84933403 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
84933340 TAGGATTTAT
84933350 TTTTATTTATCTTTAATTA
1 TTTTATTTATCTTTAATTA
* *
84933369 TGTTTAATTATCTTTATTTA
1 T-TTTATTTATCTTTAATTA
84933389 TTTGTATTTATCTTT
1 TTT-TATTTATCTTT
84933404 TAGAATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (19 bp):
TTTTATTTATCTTTAATTA
Found at i:84937229 original size:13 final size:13
Alignment explanation
Indices: 84937185--84937235 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
84937175 TTTATTAGTA
84937185 TTTATTATTTTAT
1 TTTATTATTTTAT
* *
84937198 TTCACTT-TATTAGT
1 TTTA-TTATTTTA-T
84937212 ATTTATTATTTTAT
1 -TTTATTATTTTAT
84937226 TTTATTATTT
1 TTTATTATTT
84937236 ATTACTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
13 17 0.57
14 6 0.20
15 7 0.23
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:84937234 original size:20 final size:20
Alignment explanation
Indices: 84937185--84937248 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
84937175 TTTATTAGTA
84937185 TTTATTATTTTATTTCACTTTA-
1 TTTATTA-TTTA-TT-ACTTTAT
* *
84937207 -TTAGTATTTATTATTTTAT
1 TTTATTATTTATTACTTTAT
84937226 TTTATTATTTATTACTTTAT
1 TTTATTATTTATTACTTTAT
84937246 TTT
1 TTT
84937249 TGGATATTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 5 0.14
19 2 0.06
20 24 0.67
21 5 0.14
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTATTATTTATTACTTTAT
Found at i:84938811 original size:17 final size:17
Alignment explanation
Indices: 84938789--84938823 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
84938779 TTTTAGGGAC
*
84938789 TAAATTGAAGGCAAAAG
1 TAAATTGAAGGAAAAAG
*
84938806 TAAATTTAAGGAAAAAG
1 TAAATTGAAGGAAAAAG
84938823 T
1 T
84938824 GTAAATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.20, T:0.23
Consensus pattern (17 bp):
TAAATTGAAGGAAAAAG
Found at i:84938979 original size:12 final size:12
Alignment explanation
Indices: 84938962--84938995 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
84938952 TGTTTAATTA
84938962 TATTAAGATAAT
1 TATTAAGATAAT
84938974 TATTAAAGATAAT
1 TATT-AAGATAAT
*
84938987 TATTTAGAT
1 TATTAAGAT
84938996 TTAAGTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (12 bp):
TATTAAGATAAT
Found at i:84938984 original size:13 final size:13
Alignment explanation
Indices: 84938956--84938990 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
84938946 ATTTAATGTT
*
84938956 TAATTATATTAAGA
1 TAATTAT-TAAAGA
84938970 TAATTATTAAAGA
1 TAATTATTAAAGA
84938983 TAATTATT
1 TAATTATT
84938991 TAGATTTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (13 bp):
TAATTATTAAAGA
Found at i:84939022 original size:10 final size:10
Alignment explanation
Indices: 84939007--84939058 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
84938997 TAAGTTTAGG
84939007 ATTTATTTTT
1 ATTTATTTTT
*
84939017 ATTTATCTTT
1 ATTTATTTTT
* *
84939027 AATTATCTTT
1 ATTTATTTTT
*
84939037 ATTTATTTGT
1 ATTTATTTTT
84939047 ATTTATCTTTT
1 ATTTAT-TTTT
84939058 A
1 A
84939059 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:84943117 original size:22 final size:22
Alignment explanation
Indices: 84943089--84943134 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
84943079 TATATATATG
84943089 TATTAAAA-TAAATACATAATAA
1 TATTAAAAGTAAATACATAA-AA
*
84943111 TATTAAAAGTATATACATAAAA
1 TATTAAAAGTAAATACATAAAA
84943133 TA
1 TA
84943135 GTTATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (22 bp):
TATTAAAAGTAAATACATAAAA
Found at i:84943146 original size:23 final size:22
Alignment explanation
Indices: 84943089--84943148 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
84943079 TATATATATG
*
84943089 TATTAAAATAAATACATAATAA
1 TATTAAAATATATACATAATAA
84943111 TATTAAAAGTATATACATAA-AA
1 TATTAAAA-TATATACATAATAA
*
84943133 TAGTTATTAATATATA
1 TA-TTA-AAATATATA
84943149 TATACATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 12 0.36
23 19 0.58
24 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (22 bp):
TATTAAAATATATACATAATAA
Found at i:84943257 original size:3 final size:3
Alignment explanation
Indices: 84943249--84943284 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
84943239 AAACATATAC
*
84943249 TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84943285 GATGTATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:84943537 original size:26 final size:25
Alignment explanation
Indices: 84943481--84943543 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
84943471 TAGATATAAT
* *
84943481 AATATATACATAATATGGTATTCAA
1 AATATATACATAACATAGTATTCAA
*
84943506 ATATATATATATAACATAGTATTCAA
1 A-ATATATACATAACATAGTATTCAA
*
84943532 GAATATGTACAT
1 -AATATATACAT
84943544 GAGATGATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.03
26 29 0.94
27 1 0.03
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.37
Consensus pattern (25 bp):
AATATATACATAACATAGTATTCAA
Found at i:84943537 original size:28 final size:26
Alignment explanation
Indices: 84943482--84943531 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
84943472 AGATATAATA
* *
84943482 ATATATACATAATATGGTATTCAAAT
1 ATATATACATAACATAGTATTCAAAT
*
84943508 ATATATATATAACATAGTATTCAA
1 ATATATACATAACATAGTATTCAA
84943532 GAATATGTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (26 bp):
ATATATACATAACATAGTATTCAAAT
Found at i:84943620 original size:9 final size:10
Alignment explanation
Indices: 84943606--84943648 Score: 54
Period size: 9 Copynumber: 4.4 Consensus size: 10
84943596 AACATTAAAA
84943606 ATATATA-AT
1 ATATATACAT
*
84943615 ATATATACAAA
1 ATATATAC-AT
84943626 ATATATACA-
1 ATATATACAT
84943635 ATATATACAT
1 ATATATACAT
84943645 ATAT
1 ATAT
84943649 TTCGAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 16 0.53
10 5 0.17
11 9 0.30
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (10 bp):
ATATATACAT
Found at i:84943628 original size:20 final size:20
Alignment explanation
Indices: 84943603--84943643 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
84943593 AATAACATTA
84943603 AAAATATATA-ATATATATAC
1 AAAATATATACA-ATATATAC
84943623 AAAATATATACAATATATAC
1 AAAATATATACAATATATAC
84943643 A
1 A
84943644 TATATTTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAATATATACAATATATAC
Found at i:84943821 original size:38 final size:38
Alignment explanation
Indices: 84943788--84943873 Score: 111
Period size: 38 Copynumber: 2.2 Consensus size: 38
84943778 TATATAACTA
*
84943788 ATAATATTAAAATATATACATA-ATAATATATATAAAAT
1 ATAATATTAAAA-ACATACATACATAATATATATAAAAT
*
84943826 ATAATATTAAAAACATATATACATAATATATATGAAAAAT
1 ATAATATTAAAAACATACATACATAATATATAT--AAAAT
84943866 ATATATAT
1 ATA-ATAT
84943874 AATATAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 7 0.17
38 23 0.55
40 8 0.19
41 4 0.10
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (38 bp):
ATAATATTAAAAACATACATACATAATATATATAAAAT
Found at i:84943831 original size:41 final size:43
Alignment explanation
Indices: 84943786--84943880 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 43
84943776 GATATATAAC
* *
84943786 TAATAATATTAAA-ATATATACATAATAATATAT-ATAAA-ATA
1 TAATAATATAAAACATATATACATAAT-ATATATGAAAAATATA
*
84943827 TAATATTA-AAAACATATATACATAATATATATGAAAAATATA
1 TAATAATATAAAACATATATACATAATATATATGAAAAATATA
84943869 TATATAATATAA
1 TA-ATAATATAA
84943881 TATTAAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
40 9 0.20
41 24 0.53
42 5 0.11
43 5 0.11
44 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (43 bp):
TAATAATATAAAACATATATACATAATATATATGAAAAATATA
Found at i:84943867 original size:24 final size:24
Alignment explanation
Indices: 84943798--84943903 Score: 106
Period size: 24 Copynumber: 4.2 Consensus size: 24
84943788 ATAATATTAA
* * *
84943798 AATATATACATAATAATATATATAA
1 AATATA-ATATAAAAATATATATAT
*
84943823 AATATAATATTAAAAACATATATACAT
1 AATATAATA-T-AAAA-ATATATATAT
84943850 AATAT-ATATGAAAAATATATATAT
1 AATATAATAT-AAAAATATATATAT
* *
84943874 AATATAATATTAAAATATTTATAT
1 AATATAATATAAAAATATATATAT
84943898 AATATA
1 AATATA
84943904 TATTTATTAG
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
24 34 0.49
25 16 0.23
26 6 0.09
27 13 0.19
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (24 bp):
AATATAATATAAAAATATATATAT
Found at i:84944068 original size:8 final size:8
Alignment explanation
Indices: 84944055--84944088 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
84944045 AAGATATTAA
84944055 AATAAAGT
1 AATAAAGT
84944063 AATAAAGT
1 AATAAAGT
84944071 AATAAAGT
1 AATAAAGT
84944079 AATAAAGT
1 AATAAAGT
84944087 AA
1 AA
84944089 CACCATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (8 bp):
AATAAAGT
Found at i:84946037 original size:21 final size:21
Alignment explanation
Indices: 84946012--84946064 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
84946002 AGATAAGATC
*
84946012 TGCAACTTCAAT-ATGCTCCAA
1 TGCAACTTCAATCA-ACTCCAA
* *
84946033 TGCAACTTCGATCAACTCCAC
1 TGCAACTTCAATCAACTCCAA
84946054 TGCAACTTCAA
1 TGCAACTTCAA
84946065 GGAGGCAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.26
Consensus pattern (21 bp):
TGCAACTTCAATCAACTCCAA
Found at i:84946376 original size:77 final size:77
Alignment explanation
Indices: 84946249--84946403 Score: 213
Period size: 77 Copynumber: 2.0 Consensus size: 77
84946239 AAAAGTAGAG
* *
84946249 TTTGAAAAACAGAAATTGAAAATACCTCGACGTGAGACCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTAGACGTGAGACCCAAGGCTCAACTCACCTCTCGCAATA
84946314 TAAGTTGATTTT
66 TAAGTTGATTTT
* * * * * *
84946326 TTTGAAAAATAGGAGTTGAAAATACCTTAG-CGTGTGAGCCAAGGCTCAACTCACCTCTCGTAAT
1 TTTGAAAAACAGAAATTGAAAATACC-TAGACGTGAGACCCAAGGCTCAACTCACCTCTCGCAAT
*
84946390 ATGAGTTGATTTT
65 ATAAGTTGATTTT
84946403 T
1 T
84946404 GAAAAGTAGA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
77 66 0.97
78 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (77 bp):
TTTGAAAAACAGAAATTGAAAATACCTAGACGTGAGACCCAAGGCTCAACTCACCTCTCGCAATA
TAAGTTGATTTT
Found at i:84946400 original size:166 final size:168
Alignment explanation
Indices: 84946116--84946666 Score: 546
Period size: 166 Copynumber: 3.3 Consensus size: 168
84946106 CTCAACATGT
*
84946116 GACCCGAGGCTCAACTCACCTCTCGCGATATAAGTTGA--TTTTTGAAAACGTAACAGGAATTGA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAAC--AACAGGAATTGA
* *
84946179 AAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGGGTTGATTTTTGAAAAG
64 AAATACCTTAGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAG
*
84946244 TAGAGTTTGAAAAACAGAAATTGAAAATACCTCGACGTGA
129 TAGAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGA
* *
84946284 GACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTG-AAA-AATAGGAGTTGAAA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAACAGGAATTGAAA
* *
84946347 ATACCTTAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGTA
66 ATACCTTAGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAGTA
* * * * * *
84946412 GAATTTGAAAAACGGAATTTGAAAATACTTTGGCGTGT
131 GAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGA
* * * * * *
84946450 GAGCCAAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAGTAGAATTTGAAAAACA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT------TTGAA----AACAACA
* * * * * *
84946515 -GAATTTGAAAATACC-TCGACGTGAGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
56 GGAA-TTGAAAATACCTTAG-CGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
* * *
84946578 TTTT------T---TTTTGAAAAACAGAATTTGAAAATACCTCAACGT--
119 TTTTGAAAAGTAGAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGA
* ** *
84946617 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACA
1 GACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACA
84946667 GAAATAAAAA
Statistics
Matches: 326, Mismatches: 41, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
155 3 0.01
159 4 0.01
165 3 0.01
166 143 0.44
167 32 0.10
168 37 0.11
169 31 0.10
170 6 0.02
172 3 0.01
173 1 0.00
177 6 0.02
178 57 0.17
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (168 bp):
GACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAACAGGAATTGAAA
ATACCTTAGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAGTA
GAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGA
Found at i:84946480 original size:89 final size:89
Alignment explanation
Indices: 84946326--84946581 Score: 386
Period size: 89 Copynumber: 2.9 Consensus size: 89
84946316 AGTTGATTTT
* * * * *
84946326 TTTGAAAAATAGGAGTTGAAAATACCTTAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGTAATA
1 TTTGAAAAACAGAATTTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
84946391 TGAGTTGATTTTTGAAAAGTAGAA
66 TGAGTTGATTTTTGAAAAGTAGAA
* * *
84946415 TTTGAAAAACGGAATTTGAAAATACTTTGGCGTGTGAGCCAAGGCTCAACTTACCTCTCGCAATA
1 TTTGAAAAACAGAATTTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
84946480 TGAGTTGATTTTTGAAAAGTAGAA
66 TGAGTTGATTTTTGAAAAGTAGAA
* * * * * *
84946504 TTTGAAAAACAGAATTTGAAAATACCTCGACGTGAGACCCGAGACTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAATTTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
84946569 TGAGTTGATTTTT
66 TGAGTTGATTTTT
84946582 TTTTTGAAAA
Statistics
Matches: 150, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 150 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (89 bp):
TTTGAAAAACAGAATTTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAGTAGAA
Found at i:84946509 original size:14 final size:14
Alignment explanation
Indices: 84946490--84946525 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
84946480 TGAGTTGATT
**
84946490 TTTGAAAAGTAGAA
1 TTTGAAAAACAGAA
84946504 TTTGAAAAACAGAA
1 TTTGAAAAACAGAA
84946518 TTTGAAAA
1 TTTGAAAA
84946526 TACCTCGACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.28
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:84946563 original size:255 final size:253
Alignment explanation
Indices: 84946171--84946664 Score: 776
Period size: 255 Copynumber: 1.9 Consensus size: 253
84946161 AAACGTAACA
*
84946171 GGAATTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGGGTTGATTT
1 GGAATTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
* *
84946236 TTGAAAAGTAGAGTTTGAAAAACAGAAATTGAAAATACCTCGACGTGAGACCCGAGGCTCAACTC
66 TTGAAAAGTAGAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGAGACCCGAGACTCAACTC
* * * *
84946301 ACCTCTCGCAATATAAGTTGA-TTTTTTTGAAAAATAGGAGTTGAAAATACCTTAGCGTGTGAGC
131 ACCTCTCGCAATATAAGTTGATTTTTTTTGAAAAACAGAAGTTGAAAATACCTCAACGTGT---C
*
84946365 -CAAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGTAGAATTTGAAAAAC
193 TCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTAGAATTTGAAAAAC
* * *
84946425 GGAATTTGAAAATACTTTGGCGTGTGAGCCAAGGCTCAACTTACCTCTCGCAATATGAGTTGATT
1 GGAA-TTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATT
*
84946490 TTTGAAAAGTAGAATTTGAAAAACAGAATTTGAAAATACCTCGACGTGAGACCCGAGACTCAACT
65 TTTGAAAAGTAGAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGAGACCCGAGACTCAACT
* *
84946555 CACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAGAATTTGAAAATACCTCAACGTGTC
130 CACCTCTCGCAATATAAGTTGA--TTTTTTTTGAAAAACAGAAGTTGAAAATACCTCAACGTGTC
**
84946620 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
193 TCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
84946665 CAGAAATAAA
Statistics
Matches: 219, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
254 4 0.02
255 140 0.64
256 41 0.19
258 34 0.16
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (253 bp):
GGAATTGAAAATACCTTGGCGTGTGAGCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
TTGAAAAGTAGAATTTGAAAAACAGAAATTGAAAATACCTCGACGTGAGACCCGAGACTCAACTC
ACCTCTCGCAATATAAGTTGATTTTTTTTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTCA
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTAGAATTTGAAAAAC
Found at i:84946658 original size:78 final size:79
Alignment explanation
Indices: 84946504--84946659 Score: 251
Period size: 78 Copynumber: 2.0 Consensus size: 79
84946494 AAAAGTAGAA
*
84946504 TTTGAAAAACAGAATTTGAAAATACCTCGACGTGAGACCCGAGACTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAATTTGAAAATACCTCAACGT-AGACCCGAGACTCAACTCACCTCTCGCAATA
84946569 TGAGTTGATTTTTTT
65 TGAGTTGATTTTTTT
* ** *
84946584 TTTGAAAAACAGAATTTGAAAATACCTCAACGT-GTCTTGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGAAAAACAGAATTTGAAAATACCTCAACGTAGACCCGAGACTCAACTCACCTCTCGCAATAT
84946648 GAGTTGATTTTT
66 GAGTTGATTTTT
84946660 GAAAACAGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 39 0.55
80 32 0.45
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (79 bp):
TTTGAAAAACAGAATTTGAAAATACCTCAACGTAGACCCGAGACTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTT
Found at i:84954964 original size:22 final size:22
Alignment explanation
Indices: 84954936--84954980 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
84954926 ATACAATGAA
84954936 TGAATAAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
*
84954958 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
84954980 T
1 T
84954981 AGTCATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.04, G:0.20, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:84958967 original size:22 final size:22
Alignment explanation
Indices: 84958942--84958988 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
84958932 ATATATATAT
84958942 ATATTAAAA-TAAATACATAATA
1 ATATTAAAAGTAAATACATAA-A
*
84958964 ATATTAAAAGTATATACATAAA
1 ATATTAAAAGTAAATACATAAA
84958986 ATA
1 ATA
84958989 GTTATTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (22 bp):
ATATTAAAAGTAAATACATAAA
Found at i:84959000 original size:23 final size:22
Alignment explanation
Indices: 84958942--84959002 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
84958932 ATATATATAT
*
84958942 ATATTAAAATAAATACATAATA
1 ATATTAAAATATATACATAATA
84958964 ATATTAAAAGTATATACATAA-A
1 ATATTAAAA-TATATACATAATA
*
84958986 ATAGTTATTAATATATA
1 ATA-TTA-AAATATATA
84959003 TATACATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 13 0.38
23 19 0.56
24 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (22 bp):
ATATTAAAATATATACATAATA
Found at i:84959111 original size:3 final size:3
Alignment explanation
Indices: 84959103--84959138 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
84959093 AAACATATAC
*
84959103 TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
84959139 GATGTATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:84959362 original size:24 final size:25
Alignment explanation
Indices: 84959335--84959421 Score: 77
Period size: 26 Copynumber: 3.4 Consensus size: 25
84959325 TAGATATAAT
*
84959335 AATATATACATAATATGGTATTAAA
1 AATATATACATAACATGGTATTAAA
* * *
84959360 ATATATATATATAACATAGTATTCAAG
1 A-ATATATACATAACATGGTATT-AAA
* * * *
84959387 AATATGTACATGAGATGATA-TAAA
1 AATATATACATAACATGGTATTAAA
84959411 AATATATACAT
1 AATATATACAT
84959422 GGAATAGTAA
Statistics
Matches: 48, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
24 12 0.25
25 2 0.04
26 31 0.65
27 3 0.06
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (25 bp):
AATATATACATAACATGGTATTAAA
Found at i:84959474 original size:9 final size:10
Alignment explanation
Indices: 84959460--84959491 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
84959450 AACATTAAAA
84959460 ATATATA-AT
1 ATATATACAT
84959469 ATATATACA-
1 ATATATACAT
84959478 ATATATACAT
1 ATATATACAT
84959488 ATAT
1 ATAT
84959492 TTAAAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATACAT
Found at i:84959665 original size:38 final size:38
Alignment explanation
Indices: 84959632--84959712 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
84959622 TATATAACTA
*
84959632 ATAATATTAAAATATATACATA-ATAATATATATAAAAT
1 ATAATATTAAAA-ACATACATACATAATATATATAAAAT
*
84959670 ATAATATTAAAAACATATATACATAATATATATGAAAAAT
1 ATAATATTAAAAACATACATACATAATATATAT--AAAAT
84959710 ATA
1 ATA
84959713 TATAATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
37 7 0.18
38 23 0.61
40 8 0.21
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (38 bp):
ATAATATTAAAAACATACATACATAATATATATAAAAT
Found at i:84959700 original size:13 final size:12
Alignment explanation
Indices: 84959616--84959748 Score: 78
Period size: 13 Copynumber: 10.9 Consensus size: 12
84959606 ATAATAGTAT
*
84959616 AAAAGATATATA
1 AAAATATATATA
*
84959628 ACTAATA-ATATTA
1 A-AAATATATA-TA
*
84959641 AAATATATACATA
1 AAA-ATATATATA
*
84959654 ATAATATATAT-
1 AAAATATATATA
84959665 AAAATATAATATTA
1 AAAATAT-ATA-TA
*
84959679 AAAACATATATA
1 AAAATATATATA
*
84959691 CATAATATATATGA
1 -AAAATATATAT-A
84959705 AAAATATATAT-
1 AAAATATATATA
* *
84959716 AATATA-ATATT
1 AAAATATATATA
*
84959727 AAAATATTTAT-
1 AAAATATATATA
*
84959738 ATAATATATAT
1 AAAATATATAT
84959749 TTATTAGGAA
Statistics
Matches: 94, Mismatches: 16, Indels: 23
0.71 0.12 0.17
Matches are distributed among these distances:
10 4 0.04
11 25 0.27
12 20 0.21
13 36 0.38
14 9 0.10
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.37
Consensus pattern (12 bp):
AAAATATATATA
Found at i:84959738 original size:22 final size:22
Alignment explanation
Indices: 84959645--84959749 Score: 86
Period size: 23 Copynumber: 4.5 Consensus size: 22
84959635 ATATTAAAAT
* * *
84959645 ATATACATAATAATATATATAAA
1 ATATA-ATATTAAAATATATATA
*
84959668 ATATAATATTAAAAACATATATA
1 ATATAATATT-AAAATATATATA
*
84959691 CATAATATATATGAAAAATATATATA
1 -AT-ATA-ATAT-TAAAATATATATA
84959717 ATATAATATTAAAATATTTATATA
1 ATATAATATTAAAATA--TATATA
84959741 ATAT-ATATT
1 ATATAATATT
84959750 TATTAGGAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
22 10 0.15
23 23 0.34
24 15 0.22
25 5 0.07
26 15 0.22
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (22 bp):
ATATAATATTAAAATATATATA
Found at i:84959818 original size:18 final size:19
Alignment explanation
Indices: 84959789--84959826 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
84959779 TGCTACATAA
*
84959789 ATATATTAAAAACATATAC
1 ATATATTAAAAAAATATAC
84959808 ATATA-TAAAAAAATATAC
1 ATATATTAAAAAAATATAC
84959826 A
1 A
84959827 CTAATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
ATATATTAAAAAAATATAC
Found at i:84959910 original size:8 final size:8
Alignment explanation
Indices: 84959897--84959930 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
84959887 AAGATATTAA
84959897 AATAAAGT
1 AATAAAGT
84959905 AATAAAGT
1 AATAAAGT
84959913 AATAAAGT
1 AATAAAGT
84959921 AATAAAGT
1 AATAAAGT
84959929 AA
1 AA
84959931 CACCATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (8 bp):
AATAAAGT
Found at i:84963804 original size:29 final size:29
Alignment explanation
Indices: 84963754--84963810 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
84963744 ATAGGATATG
* * *
84963754 AAAAAATAAATTTGATGTGATGTATTTTA
1 AAAAAATAAATTTGAAGAGATGAATTTTA
* *
84963783 AAAAAATTATTTTGAAGAGATGAATTTT
1 AAAAAATAAATTTGAAGAGATGAATTTT
84963811 TTTTTGGTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.40
Consensus pattern (29 bp):
AAAAAATAAATTTGAAGAGATGAATTTTA
Found at i:84967588 original size:18 final size:18
Alignment explanation
Indices: 84967562--84967604 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
84967552 AAGTGGAAAA
* *
84967562 AGGAAACATATAAGGGTT
1 AGGATACATATAAGAGTT
84967580 AGGATACATATAAGAGTT
1 AGGATACATATAAGAGTT
84967598 AGGATAC
1 AGGATAC
84967605 GCACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGAGTT
Found at i:84968197 original size:7 final size:7
Alignment explanation
Indices: 84968187--84968217 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
84968177 TTATATACAT
84968187 AATACTA
1 AATACTA
84968194 AATACTA
1 AATACTA
84968201 AATACTA
1 AATACTA
*
84968208 AATACGA
1 AATACTA
84968215 AAT
1 AAT
84968218 CGACTATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:84969129 original size:10 final size:11
Alignment explanation
Indices: 84969114--84969183 Score: 51
Period size: 10 Copynumber: 6.8 Consensus size: 11
84969104 CTATCAACTG
84969114 TTATAAAAA-A
1 TTATAAAAATA
84969124 TTATAAAAATA
1 TTATAAAAATA
**
84969135 TTA-ATTAA-A
1 TTATAAAAATA
*
84969144 TTACAAAAATA
1 TTATAAAAATA
**
84969155 AAATAAAAATA
1 TTATAAAAATA
*
84969166 TTA-AATAATA
1 TTATAAAAATA
84969176 TTA-AAAAA
1 TTATAAAAA
84969184 AATAAAATTA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
9 4 0.09
10 28 0.61
11 14 0.30
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (11 bp):
TTATAAAAATA
Found at i:84969162 original size:31 final size:33
Alignment explanation
Indices: 84969126--84969191 Score: 100
Period size: 31 Copynumber: 2.1 Consensus size: 33
84969116 ATAAAAAATT
* *
84969126 ATAAAAATATTAATTAA-ATT-ACAAAAATAAA
1 ATAAAAATATTAAATAATATTAAAAAAAATAAA
84969157 ATAAAAATATTAAATAATATTAAAAAAAATAAA
1 ATAAAAATATTAAATAATATTAAAAAAAATAAA
84969190 AT
1 AT
84969192 TAACCCTTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 16 0.52
32 3 0.10
33 12 0.39
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (33 bp):
ATAAAAATATTAAATAATATTAAAAAAAATAAA
Found at i:84970946 original size:38 final size:38
Alignment explanation
Indices: 84970873--84970948 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
84970863 AGCCACTAAC
*
84970873 GTTATTGAAAAGTGACAAATCAGTCACCTATTAACATT
1 GTTATTGAAAAGTGACAAATCAGTCACCTACTAACATT
* *
84970911 GTTATTGAAAAGTTACAAATCAGTTA-CTGACTAACATT
1 GTTATTGAAAAGTGACAAATCAGTCACCT-ACTAACATT
84970949 TTCTGTTACA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 2 0.06
38 32 0.94
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (38 bp):
GTTATTGAAAAGTGACAAATCAGTCACCTACTAACATT
Done.