Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 265 of 318
Found at i:84974468 original size:15 final size:13
Alignment explanation
Indices: 84974429--84974482 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
84974419 TCAACCCTAT
84974429 TTTTATATTATATA
1 TTTTATATTAT-TA
*
84974443 TTGTATA--ATTA
1 TTTTATATTATTA
84974454 TTTTATGATATATTA
1 TTTTAT-AT-TATTA
84974469 -TTTATATTATTA
1 TTTTATATTATTA
84974481 TT
1 TT
84974483 ACTTATTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
11 7 0.21
12 8 0.24
13 3 0.09
14 11 0.33
15 4 0.12
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (13 bp):
TTTTATATTATTA
Found at i:84974483 original size:15 final size:16
Alignment explanation
Indices: 84974432--84974500 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 16
84974422 ACCCTATTTT
*
84974432 TATATTATATAT-TG-
1 TATATTATTTATATGA
84974446 TATAATTATTT-TATGA
1 TAT-ATTATTTATATGA
*
84974462 TATATTATTTATATTA
1 TATATTATTTATATGA
*
84974478 T-TATTACTTAT-TG-
1 TATATTATTTATATGA
*
84974491 TATAATATTT
1 TATATTATTT
84974501 TTCACAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 1 0.02
14 11 0.25
15 24 0.55
16 8 0.18
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (16 bp):
TATATTATTTATATGA
Found at i:84974594 original size:7 final size:7
Alignment explanation
Indices: 84974560--84974652 Score: 50
Period size: 7 Copynumber: 13.1 Consensus size: 7
84974550 TTTTTACTTG
84974560 TATTATA
1 TATTATA
84974567 TATT-TA
1 TATTATA
*
84974573 TTAATTATT
1 -T-ATTATA
84974582 TA-TATA
1 TATTATA
84974588 TATTATA
1 TATTATA
84974595 TATTAT-
1 TATTATA
* *
84974601 TTTTACA
1 TATTATA
84974608 TA-TATA
1 TATTATA
* *
84974614 CACTTTTA
1 TA-TTATA
84974622 TATTATA
1 TATTATA
*
84974629 AATTATAA
1 TATTAT-A
*
84974637 TTATTTTA
1 -TATTATA
84974645 TATTATA
1 TATTATA
84974652 T
1 T
84974653 CATTTTTTAT
Statistics
Matches: 63, Mismatches: 14, Indels: 18
0.66 0.15 0.19
Matches are distributed among these distances:
6 15 0.24
7 33 0.52
8 10 0.16
9 5 0.08
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (7 bp):
TATTATA
Found at i:84974610 original size:20 final size:20
Alignment explanation
Indices: 84974467--84974610 Score: 59
Period size: 20 Copynumber: 7.2 Consensus size: 20
84974457 TATGATATAT
* *
84974467 TATT-TATATTATTATTACT
1 TATTATATATTATTTTTACA
* *
84974486 TATTGTATAATATTTTTCACA
1 TATTATATATTATTTTT-ACA
*
84974507 AATTAT-TATTA-TTTTACA
1 TATTATATATTATTTTTACA
* **
84974525 TCATTATTTATATATCATTAC-
1 T-ATTATATAT-TATTTTTACA
* *
84974546 TA-TAT-TTTTACTTGTATTATA
1 TATTATATATTA-TT-T-TTACA
* *
84974567 TATT-TATTAATTATTTATATA
1 TATTATA-T-ATTATTTTTACA
84974588 TATTATATATTATTTTTACA
1 TATTATATATTATTTTTACA
84974608 TAT
1 TAT
84974611 ATACACTTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 29
0.67 0.12 0.21
Matches are distributed among these distances:
17 2 0.02
18 6 0.06
19 16 0.17
20 34 0.37
21 21 0.23
22 8 0.09
23 3 0.03
24 3 0.03
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.58
Consensus pattern (20 bp):
TATTATATATTATTTTTACA
Found at i:84974970 original size:17 final size:18
Alignment explanation
Indices: 84974950--84975005 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
84974940 TTATATTTTA
84974950 TATTTTTATATAAT-TAT
1 TATTTTTATATAATATAT
*
84974967 TATTCTTATA-AATATAT
1 TATTTTTATATAATATAT
*
84974984 T-TTTATTATATATTATAT
1 TATTT-TTATATAATATAT
84975002 TATT
1 TATT
84975006 AAATATCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 5 0.16
17 18 0.56
18 7 0.22
19 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATATAATATAT
Found at i:84975004 original size:15 final size:16
Alignment explanation
Indices: 84974939--84975011 Score: 60
Period size: 17 Copynumber: 4.6 Consensus size: 16
84974929 TTTCTAAACC
*
84974939 ATTATATTTTA-TATT
1 ATTATATATTATTATT
*
84974954 TTTATATAATTATTATT
1 ATTATAT-ATTATTATT
* * *
84974971 CTTATAAATATATTTTT
1 ATTATATAT-TATTATT
84974988 ATTATATATTA-TATT
1 ATTATATATTATTATT
*
84975003 ATTAAATAT
1 ATTATATAT
84975012 CACATTTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
15 17 0.37
16 7 0.15
17 22 0.48
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATATATTATTATT
Found at i:84975009 original size:30 final size:31
Alignment explanation
Indices: 84974948--84975011 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
84974938 CATTATATTT
*
84974948 TATATTTTTATATAATTATTATTCTTATAAA
1 TATATTTTTATATAATTATTATTCATATAAA
84974979 TATATTTTTATTATATATTA-TATT-AT-TAAA
1 TATATTTTTA-TATA-ATTATTATTCATATAAA
84975009 TAT
1 TAT
84975012 CACATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 7 0.23
31 11 0.37
32 8 0.27
33 4 0.13
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (31 bp):
TATATTTTTATATAATTATTATTCATATAAA
Found at i:84979207 original size:16 final size:17
Alignment explanation
Indices: 84979174--84979210 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
84979164 TAAAAACTAT
*
84979174 AAAAAATTCAAATGTTC
1 AAAAAATTCAAATATTC
84979191 AAAAAATTCAAA-ATTC
1 AAAAAATTCAAATATTC
84979207 AAAA
1 AAAA
84979211 TCCAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.62, C:0.11, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAAATTCAAATATTC
Found at i:84979695 original size:13 final size:13
Alignment explanation
Indices: 84979677--84979766 Score: 108
Period size: 13 Copynumber: 6.9 Consensus size: 13
84979667 AGTTTGGCAA
84979677 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
84979690 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
84979703 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
84979716 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* * *
84979729 TGCTGTGGAAAGG
1 TGCTTTTGAAAAG
*
84979742 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
84979755 TGCTTTTGAAAA
1 TGCTTTTGAAAA
84979767 ATTTAGTTTA
Statistics
Matches: 61, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 61 1.00
ACGTcount: A:0.27, C:0.08, G:0.31, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:84979765 original size:26 final size:26
Alignment explanation
Indices: 84979684--84979758 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
84979674 CAATGCTTTT
84979684 GAAAAGTGCTTTTGAGAAGTGCTGTG
1 GAAAAGTGCTTTTGAGAAGTGCTGTG
84979710 GAAAAGTGCTTTTGAGAAGTGCTGTG
1 GAAAAGTGCTTTTGAGAAGTGCTGTG
*
84979736 GAAAGGTGCTTTTGAGAAGTGCT
1 GAAAAGTGCTTTTGAGAAGTGCT
84979759 TTTGAAAAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.08, G:0.35, T:0.31
Consensus pattern (26 bp):
GAAAAGTGCTTTTGAGAAGTGCTGTG
Found at i:84982095 original size:44 final size:44
Alignment explanation
Indices: 84982023--84982116 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
84982013 TTCATAGGTC
* *
84982023 AAAC-AATATTAAAATAACCTACAATAATCAGAGTTTAAATGGG
1 AAACTAATATTAAAATAACCTACAATAATCAAAGTTTAAATGGA
* *
84982066 AAACTAATATTAAAATAACCTACAGTAATCAAAGTTTAAGTGGA
1 AAACTAATATTAAAATAACCTACAATAATCAAAGTTTAAATGGA
84982110 AAACTAA
1 AAACTAA
84982117 AAACAAAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 4 0.09
44 42 0.91
ACGTcount: A:0.52, C:0.12, G:0.11, T:0.26
Consensus pattern (44 bp):
AAACTAATATTAAAATAACCTACAATAATCAAAGTTTAAATGGA
Found at i:84984628 original size:15 final size:15
Alignment explanation
Indices: 84984608--84984641 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
84984598 AGAGTGAAGG
84984608 TAAGGAGTGCTTGTT
1 TAAGGAGTGCTTGTT
*
84984623 TAAGGAGTGCTTTTT
1 TAAGGAGTGCTTGTT
84984638 TAAG
1 TAAG
84984642 ATGTCTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (15 bp):
TAAGGAGTGCTTGTT
Found at i:84987796 original size:42 final size:41
Alignment explanation
Indices: 84987741--84988058 Score: 147
Period size: 37 Copynumber: 8.4 Consensus size: 41
84987731 AGGCAACCTT
*
84987741 AAAAAGGTTGGGATGAACCTTCTTATCTAA-GACAACATTTA
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGA-AACATTTA
*
84987782 AAAGAAGGTTGGGATAAACCTTCTTATCTAAGGAAACCTTTA
1 AAA-AAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
* * * *
84987824 AAAAAGGTTGGG-TAGA-C--CTTATCTAAGGTAGC-CTT-
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
* * * *
84987859 AAAAAGGTTGGGATAGACC--C--GTCTAAGGCAAC-CTT-
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
** * * * * * *
84987894 AAAAAGGTTTAGATAGA-C--CTTGTCTAAAGCAACCTATA
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
* * * *
84987932 AAAAAGGTTGGGATAGACC--CGT-T-TAAGGCAAC-CTT-
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
* * * *
84987967 AAAAAGGTTGGGAT-GA-C--CTTGTCTAAGGCAACCTTTA
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
* *
84988004 AAAAAGGTTGGGATAGACC--C--ATCTAAGGAAACCTTTA
1 AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
*
84988041 AAAATGGTTGGGATAAAC
1 AAAAAGGTTGGGATAAAC
84988059 ACATCTAAGG
Statistics
Matches: 236, Mismatches: 26, Indels: 34
0.80 0.09 0.11
Matches are distributed among these distances:
33 3 0.01
34 5 0.02
35 62 0.26
36 20 0.08
37 69 0.29
38 18 0.08
39 6 0.03
40 3 0.01
41 12 0.05
42 36 0.15
43 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.25
Consensus pattern (41 bp):
AAAAAGGTTGGGATAAACCTTCTTATCTAAGGAAACATTTA
Found at i:84987849 original size:37 final size:36
Alignment explanation
Indices: 84987667--84988170 Score: 440
Period size: 35 Copynumber: 13.7 Consensus size: 36
84987657 CCGACCTTTA
*
84987667 AAAAAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTTT
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACC---TT
* * *
84987706 AAGAAGGTTGGGATAGATC-TGTTTAAGGCAACCTT
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTT
* * *
84987741 AAAAAGGTTGGGAT-GAACCTTCTTATCTAAGACAACATTT
1 AAAAAGGTTGGGATAG-A-C--CTTGTCTAAGGCAAC-CTT
* * *
84987781 AAAAGAAGGTTGGGATAAACCTTCTTATCTAAGGAAACCTTT
1 -AAA-AAGGTTGGGATAGA-C--CTTGTCTAAGGCAACC-TT
* * *
84987823 AAAAAAGGTTGGG-TAGACCTTATCTAAGGTAGCCTT
1 -AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTT
*
84987859 AAAAAGGTTGGGATAGACC-CGTCTAAGGCAACCTT
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTT
** *
84987894 AAAAAGGTTTAGATAGACCTTGTCTAAAGCAACCTAT
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCT-T
* *
84987931 AAAAAAGGTTGGGATAGACC-CGTTTAAGGCAACCTT
1 -AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTT
84987967 AAAAAGGTTGGGAT-GACCTTGTCTAAGGCAACCTTT
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TT
** *
84988003 AAAAAAGGTTGGGATAGACC-CATCTAAGGAAACCTTT
1 -AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TT
* * *
84988040 AAAAATGGTTGGGATAAACAC--ATCTAAGGCAACCCT
1 AAAAA-GGTTGGGATAGAC-CTTGTCTAAGGCAACCTT
* *
84988076 AAAAAGGTTCAGG-TAGACC-TGTCTAAGGCAACCCT
1 AAAAAGGTT-GGGATAGACCTTGTCTAAGGCAACCTT
*
84988111 AAAAAGGTTAGGG-TAGACC-TGTCTAAGGCAAACTT
1 AAAAAGGTT-GGGATAGACCTTGTCTAAGGCAACCTT
*
84988146 AAAAAGGTTGGGATAGATCTTGTCT
1 AAAAAGGTTGGGATAGACCTTGTCT
84988171 CAGGTCTCAT
Statistics
Matches: 395, Mismatches: 46, Indels: 51
0.80 0.09 0.10
Matches are distributed among these distances:
34 9 0.02
35 150 0.38
36 42 0.11
37 79 0.20
38 35 0.09
39 28 0.07
40 5 0.01
41 12 0.03
42 35 0.09
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.26
Consensus pattern (36 bp):
AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTT
Found at i:84988000 original size:72 final size:72
Alignment explanation
Indices: 84987667--84988162 Score: 474
Period size: 72 Copynumber: 6.8 Consensus size: 72
84987657 CCGACCTTTA
* * * * *
84987667 AAAAAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTTTAAGAAGGTTGGGATAGATCTGTTTAA
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACC--TTTAAAAAGGTTGGGATAGACCCGTCTAA
84987732 GGCAACCTT
64 GGCAACCTT
* * * *
84987741 AAAAAGGTTGGGAT-GAACCTTCTTATCTAAGACAACATTTAAAAGAAGGTTGGGATAAACCTTC
1 AAAAAGGTTGGGATAG-A-C--CTTGTCTAAGGCAACCTTT-AAA-AAGGTTGGGATAGACC--C
* *
84987805 TTATCTAAGGAAACCTTT
58 --GTCTAAGGCAACC-TT
* * *
84987823 AAAAAAGGTTGGG-TAGACCTTATCTAAGGTAGCC-TTAAAAAGGTTGGGATAGACCCGTCTAAG
1 -AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTGGGATAGACCCGTCTAAG
84987886 GCAACCTT
65 GCAACCTT
** * * *
84987894 AAAAAGGTTTAGATAGACCTTGTCTAAAGCAACCTATAAAAAAGGTTGGGATAGACCCGTTTAAG
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCT-TTAAAAAGGTTGGGATAGACCCGTCTAAG
84987959 GCAACCTT
65 GCAACCTT
*
84987967 AAAAAGGTTGGGAT-GACCTTGTCTAAGGCAACCTTTAAAAAAGGTTGGGATAGACCCATCTAAG
1 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTT-AAAAAGGTTGGGATAGACCCGTCTAAG
*
84988031 GAAACCTTT
65 GCAACC-TT
* * * * *
84988040 AAAAATGGTTGGGATAAACAC--ATCTAAGGCAACC-CTAAAAAGGTTCAGG-TAGACCTGTCTA
1 AAAAA-GGTTGGGATAGAC-CTTGTCTAAGGCAACCTTTAAAAAGGTT-GGGATAGACCCGTCTA
*
84988101 AGGCAACCCT
63 AGGCAACCTT
*
84988111 AAAAAGGTTAGGG-TAGACC-TGTCTAAGGCAAAC-TTAAAAAGGTTGGGATAGA
1 AAAAAGGTT-GGGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTGGGATAGA
84988163 TCTTGTCTCA
Statistics
Matches: 351, Mismatches: 46, Indels: 54
0.78 0.10 0.12
Matches are distributed among these distances:
69 3 0.01
70 43 0.12
71 29 0.08
72 86 0.25
73 58 0.17
74 37 0.11
75 6 0.02
76 18 0.05
77 29 0.08
78 2 0.01
79 12 0.03
81 11 0.03
82 4 0.01
83 13 0.04
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (72 bp):
AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTGGGATAGACCCGTCTAAGG
CAACCTT
Found at i:84995029 original size:40 final size:40
Alignment explanation
Indices: 84994974--84995054 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
84994964 TCCAAAAGAA
*
84994974 CAAGCCACATTGCTCTTGTAAATCAATTCAAGCAACTAAC
1 CAAGCCACATTGCTCTTCTAAATCAATTCAAGCAACTAAC
84995014 CAAGCCACATTGCTCTTCTAAATCAATTCAAGCAACTAAC
1 CAAGCCACATTGCTCTTCTAAATCAATTCAAGCAACTAAC
84995054 C
1 C
84995055 CTTTAAATTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.37, C:0.30, G:0.09, T:0.25
Consensus pattern (40 bp):
CAAGCCACATTGCTCTTCTAAATCAATTCAAGCAACTAAC
Found at i:84996749 original size:145 final size:146
Alignment explanation
Indices: 84996486--84996769 Score: 464
Period size: 145 Copynumber: 2.0 Consensus size: 146
84996476 AGAAAGCATT
* * *
84996486 GATTATGAAAGACATTAGCTAGTCTACTTTTATCAACAATCTTATTAAGTAAATATGTCAGGAAT
1 GATTATGAAAGACACTAGCTAATCTACTTTTATCAACAATCTTATTAACTAAATATGTCAGGAAT
* * *
84996551 CCTATCCTTTTACTATTTAAGAAGCTTGTCATTTATAATCCTTCGCTTCTATG-AATAAGATGAA
66 CCTATCCTTTTACTATTTAAGAAGCTTGTCATTTATAATCCTTCGCTTCTATGAAAAAAAAGGAA
84996615 GTTTGTAAGCCTAATC
131 GTTTGTAAGCCTAATC
* *
84996631 GATTATGAAAGACACTAGCTAATCTACTTTTTTCAGCAATCTTATTAACTAAATATG-CTAGGAA
1 GATTATGAAAGACACTAGCTAATCTACTTTTATCAACAATCTTATTAACTAAATATGTC-AGGAA
*
84996695 TCCTATCCTTTTACTATTTAATAAGCTTGTCATTTATAATCCTTCGCTTCTATGAAAAAAAAGGA
65 TCCTATCCTTTTACTATTTAAGAAGCTTGTCATTTATAATCCTTCGCTTCTATGAAAAAAAAGGA
84996760 AGTTTGTAAG
130 AGTTTGTAAG
84996770 GGTCAAGAAA
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
144 1 0.01
145 110 0.86
146 17 0.13
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (146 bp):
GATTATGAAAGACACTAGCTAATCTACTTTTATCAACAATCTTATTAACTAAATATGTCAGGAAT
CCTATCCTTTTACTATTTAAGAAGCTTGTCATTTATAATCCTTCGCTTCTATGAAAAAAAAGGAA
GTTTGTAAGCCTAATC
Found at i:84997828 original size:9 final size:9
Alignment explanation
Indices: 84997803--84997836 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
84997793 TTATTAATAC
*
84997803 AATAATTTT
1 AATAATTAT
84997812 ATATAATTAT
1 A-ATAATTAT
84997822 AATAATTAT
1 AATAATTAT
84997831 AATAAT
1 AATAAT
84997837 AATAGAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
AATAATTAT
Found at i:85001136 original size:16 final size:16
Alignment explanation
Indices: 85001115--85001147 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
85001105 ATGTGATATC
85001115 ACATTACTCAAATTTG
1 ACATTACTCAAATTTG
*
85001131 ACATTATTCAAATTTG
1 ACATTACTCAAATTTG
85001147 A
1 A
85001148 TTTGAAACGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.39
Consensus pattern (16 bp):
ACATTACTCAAATTTG
Found at i:85006037 original size:37 final size:37
Alignment explanation
Indices: 85005987--85006059 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
85005977 TAGTAGAATA
85005987 TAATGTTAGCTTCACAGAAGTTATTGCATAAAAAAAT
1 TAATGTTAGCTTCACAGAAGTTATTGCATAAAAAAAT
*
85006024 TAATGTTAGCTTCACATAAGTTATTGCATAAAAAAA
1 TAATGTTAGCTTCACAGAAGTTATTGCATAAAAAAA
85006060 ATTATCTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (37 bp):
TAATGTTAGCTTCACAGAAGTTATTGCATAAAAAAAT
Found at i:85017042 original size:12 final size:12
Alignment explanation
Indices: 85017027--85017058 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
85017017 TACCGTAAGG
85017027 GTAATAGTAACA
1 GTAATAGTAACA
85017039 GTAATAGTAACA
1 GTAATAGTAACA
85017051 GTAATAGT
1 GTAATAGT
85017059 CAGGTACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (12 bp):
GTAATAGTAACA
Found at i:85017969 original size:5 final size:5
Alignment explanation
Indices: 85017959--85018095 Score: 260
Period size: 5 Copynumber: 27.8 Consensus size: 5
85017949 ATGTATTATA
85017959 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
85018009 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
85018059 ATAAT ATAAT ATAAT AT-A- ATAAT ATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
85018096 GCAAATACTT
Statistics
Matches: 130, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
3 2 0.02
4 2 0.02
5 126 0.97
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:85029076 original size:19 final size:20
Alignment explanation
Indices: 85029054--85029091 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
85029044 TTTTTAAATT
*
85029054 AAATT-ATTTCTTTTTTAAG
1 AAATTAATTTCTTTCTTAAG
85029073 AAATTAATTTCTTTCTTAA
1 AAATTAATTTCTTTCTTAA
85029092 ATTACTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (20 bp):
AAATTAATTTCTTTCTTAAG
Found at i:85029168 original size:24 final size:24
Alignment explanation
Indices: 85029119--85029169 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
85029109 TTATATTTCT
* *
85029119 TTTTCTTTTTCTCTTTATTCTTTC
1 TTTTCTTTTTCTCTTTACTCTCTC
*
85029143 TTTTC-TTTTCTTTTTACTCTCCTC
1 TTTTCTTTTTCTCTTTACTCT-CTC
85029167 TTT
1 TTT
85029170 CTTCCCTACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTCTTTTTCTCTTTACTCTCTC
Found at i:85030758 original size:16 final size:16
Alignment explanation
Indices: 85030721--85030752 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
85030711 AGAATTGAGT
85030721 TAAG-AAATTATTTAA
1 TAAGAAAATTATTTAA
85030736 TAAGAAAATTATTTAA
1 TAAGAAAATTATTTAA
85030752 T
1 T
85030753 TGGAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
TAAGAAAATTATTTAA
Found at i:85032311 original size:29 final size:28
Alignment explanation
Indices: 85032260--85032315 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
85032250 GTATATACAA
*
85032260 TTGAAAATATATAAAAGCCTATAATATT
1 TTGAAAATATATAAAAACCTATAATATT
**
85032288 TTGAAATATATATAAAAATTTATAATAT
1 TTGAAA-ATATATAAAAACCTATAATAT
85032316 AATATATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (28 bp):
TTGAAAATATATAAAAACCTATAATATT
Found at i:85032372 original size:30 final size:28
Alignment explanation
Indices: 85032331--85032392 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
85032321 ATTAATTAAC
85032331 AAAAAAAATATAAATATATAAAAGAACT
1 AAAAAAAATATAAATATATAAAAGAACT
* * *
85032359 AAAAAAATTATATACATATATATAATAACT
1 AAAAAAA--ATATAAATATATAAAAGAACT
85032389 AAAA
1 AAAA
85032393 GTGTGTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 7 0.24
30 22 0.76
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (28 bp):
AAAAAAAATATAAATATATAAAAGAACT
Found at i:85036495 original size:216 final size:216
Alignment explanation
Indices: 85036118--85036549 Score: 801
Period size: 216 Copynumber: 2.0 Consensus size: 216
85036108 ATACATTTAT
* *
85036118 GCATTTAATATCAAAATCCATTTGTCTCAATCATATTGTCCCTTCTGAGGTCATACGAGGCCTTA
1 GCATTTAATATCAAAATCCATTCGTCTCAATCATATTGTCCCTTCTGAGCTCATACGAGGCCTTA
85036183 AAACATGCTTAGAAGTGGTTCGAGACTAAACCGATATCATTTGCAAATTTTGAGAAACTTAGAAA
66 AAACATGCTTAGAAGTGGTTCGAGACTAAACCGATATCATTTGCAAATTTTGAGAAACTTAGAAA
*
85036248 ATTTTAAAACATTTAATGGTCACATGCTCGTGTGAACAGGCCGTGTGAGGACACACCTGTGTCAT
131 ATTTTAAAACATTTAATGGTCACACGCTCGTGTGAACAGGCCGTGTGAGGACACACCTGTGTCAT
*
85036313 AAGCTGTGTGAAAATAGGACA
196 AAGCTGTGTGAAAACAGGACA
*
85036334 GCATTTAATATCAAAATCCATTCGTCTCAATCATATTGTCCCTTCTGAGCTTATACGAGGCCTTA
1 GCATTTAATATCAAAATCCATTCGTCTCAATCATATTGTCCCTTCTGAGCTCATACGAGGCCTTA
* *
85036399 AAACATGCTTAGAAGTGGTTCGAGACTAAACCGATATCATTTGTAAATTTTGATAAACTTAGAAA
66 AAACATGCTTAGAAGTGGTTCGAGACTAAACCGATATCATTTGCAAATTTTGAGAAACTTAGAAA
85036464 ATTTTAAAACATTTAATGGTCACACGCTCGTGTGAACAGGCCGTGTGAGGACACACCTGTGTCAT
131 ATTTTAAAACATTTAATGGTCACACGCTCGTGTGAACAGGCCGTGTGAGGACACACCTGTGTCAT
85036529 AAGCTGTGTGAAAACAGGACA
196 AAGCTGTGTGAAAACAGGACA
85036550 TACATACTGA
Statistics
Matches: 209, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
216 209 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (216 bp):
GCATTTAATATCAAAATCCATTCGTCTCAATCATATTGTCCCTTCTGAGCTCATACGAGGCCTTA
AAACATGCTTAGAAGTGGTTCGAGACTAAACCGATATCATTTGCAAATTTTGAGAAACTTAGAAA
ATTTTAAAACATTTAATGGTCACACGCTCGTGTGAACAGGCCGTGTGAGGACACACCTGTGTCAT
AAGCTGTGTGAAAACAGGACA
Found at i:85039893 original size:40 final size:40
Alignment explanation
Indices: 85039810--85040034 Score: 213
Period size: 40 Copynumber: 5.7 Consensus size: 40
85039800 TTGAATGCTG
* * ** * *
85039810 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGATACTAAA
** *
85039850 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
85039890 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * **
85039930 GCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
85039970 TCCGGGTTACGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
85040009 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
85040035 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 33 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:85039947 original size:80 final size:79
Alignment explanation
Indices: 85039810--85040034 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
85039800 TTGAATGCTG
* * * ** * * * * *
85039810 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
85039874 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * * *
85039890 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
85039955 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
85039970 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
85040035 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 38 0.31
80 77 0.64
81 6 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:85040052 original size:79 final size:80
Alignment explanation
Indices: 85039885--85040067 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
85039875 GTGCGAGATA
* * *
85039885 CTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
85039950 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
85039965 TTAAATCCGGGTTACGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
85040029 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
85040044 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
85040068 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 48 0.55
80 25 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:85046352 original size:20 final size:18
Alignment explanation
Indices: 85046329--85046378 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
85046319 AAAATATTTA
85046329 ATTAATTTAATATTAAAGT
1 ATTAATTTAATATTAAA-T
85046348 GATT-ATCTTAATATTAAAT
1 -ATTAAT-TTAATATTAAAT
85046367 -TTAATTTAATAT
1 ATTAATTTAATAT
85046379 AGATAAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 9 0.32
18 2 0.07
19 3 0.11
20 14 0.50
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (18 bp):
ATTAATTTAATATTAAAT
Found at i:85046401 original size:42 final size:42
Alignment explanation
Indices: 85046349--85046450 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
85046339 TATTAAAGTG
** *
85046349 ATTATCTTAATATTAAATTTAATTTAATATAGATAAACATTCT
1 ATTAT-TTAATATTAAATTTAACCTAATATAGATAAACATTAT
* **
85046392 ATTATTTAATATTAAATTTAACCTAATATTGATAAATGTTAT
1 ATTATTTAATATTAAATTTAACCTAATATAGATAAACATTAT
85046434 ATTAATTTAATATTAAA
1 ATT-ATTTAATATTAAA
85046451 GTAATTAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 34 0.65
43 18 0.35
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (42 bp):
ATTATTTAATATTAAATTTAACCTAATATAGATAAACATTAT
Found at i:85052324 original size:43 final size:42
Alignment explanation
Indices: 85052255--85052357 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 42
85052245 TGAAAATGGG
* * * * *
85052255 TGTTTGGCTGCAGGTTTTGGGGATTCTAAGGCTGGAATAGGAT
1 TGTTTGGCTGCAGGATATGGGCATTCT-AGGCTGGAATAGAAC
*
85052298 TGTTTGGCTGCAGAGATAT-GGCATTCTGGGCTGGAATAGAAC
1 TGTTTGGCTGCAG-GATATGGGCATTCTAGGCTGGAATAGAAC
*
85052340 TGTTTGGCAGCATGGATA
1 TGTTTGGCTGCA-GGATA
85052358 GGGTTGTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.53
43 21 0.41
44 3 0.06
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.32
Consensus pattern (42 bp):
TGTTTGGCTGCAGGATATGGGCATTCTAGGCTGGAATAGAAC
Found at i:85052463 original size:5 final size:5
Alignment explanation
Indices: 85052453--85052510 Score: 52
Period size: 5 Copynumber: 12.0 Consensus size: 5
85052443 AATATTTAAC
* *
85052453 TAAAA TAAAA TAAAAA TAAAA GAAAA T--AA TAAAA GAAAA -AAAA T-AAA
1 TAAAA TAAAA T-AAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
85052500 TAAAAA TAAAA
1 T-AAAA TAAAA
85052511 AGAAAGATTG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
3 3 0.07
4 8 0.18
5 24 0.55
6 9 0.20
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
TAAAA
Found at i:85052470 original size:6 final size:6
Alignment explanation
Indices: 85052454--85052511 Score: 52
Period size: 6 Copynumber: 9.7 Consensus size: 6
85052444 ATATTTAACT
85052454 AAAAT- AAAATA AAAATA AAAGA-A AATAATA AAAGA-A AAAA-A ATAAATA
1 AAAATA AAAATA AAAATA AAA-ATA AA-AATA AAA-ATA AAAATA A-AAATA
85052502 AAAATA AAAA
1 AAAATA AAAA
85052512 GAAAGATTGG
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
5 8 0.17
6 30 0.65
7 8 0.17
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:85052485 original size:13 final size:13
Alignment explanation
Indices: 85052467--85052491 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85052457 ATAAAATAAA
85052467 AATAAAAGAAAAT
1 AATAAAAGAAAAT
85052480 AATAAAAGAAAA
1 AATAAAAGAAAA
85052492 AAAATAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (13 bp):
AATAAAAGAAAAT
Found at i:85052491 original size:18 final size:18
Alignment explanation
Indices: 85052454--85052504 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
85052444 ATATTTAACT
*
85052454 AAAATAAAATAAAAATAAAA
1 AAAAT-AAAT-AAAAGAAAA
85052474 GAAAAT-AATAAAAGAAAA
1 -AAAATAAATAAAAGAAAA
85052492 AAAATAAATAAAA
1 AAAATAAATAAAA
85052505 ATAAAAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 5 0.18
18 15 0.54
19 3 0.11
21 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (18 bp):
AAAATAAATAAAAGAAAA
Found at i:85052504 original size:13 final size:14
Alignment explanation
Indices: 85052466--85052509 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
85052456 AATAAAATAA
85052466 AAATAAAAGAAAAT
1 AAATAAAAGAAAAT
*
85052480 -AATAAAAGAAAAA
1 AAATAAAAGAAAAT
85052493 AAATAAATA-AAAAT
1 AAATAAA-AGAAAAT
85052507 AAA
1 AAA
85052510 AAGAAAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 12 0.46
14 13 0.50
15 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.14
Consensus pattern (14 bp):
AAATAAAAGAAAAT
Found at i:85052505 original size:27 final size:25
Alignment explanation
Indices: 85052464--85052515 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
85052454 AAAATAAAAT
85052464 AAAAATAAAAGAAAATAATAAAAGAAA
1 AAAAATAAAAGAAAAT-A-AAAAGAAA
85052491 AAAAATAAATA-AAAATAAAAAGAAA
1 AAAAATAAA-AGAAAATAAAAAGAAA
85052516 GATTGGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 8 0.33
26 1 0.04
27 14 0.58
28 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.12
Consensus pattern (25 bp):
AAAAATAAAAGAAAATAAAAAGAAA
Found at i:85058892 original size:15 final size:15
Alignment explanation
Indices: 85058872--85058902 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85058862 AGTGCTAGGG
85058872 AGATAGTCTAATTGA
1 AGATAGTCTAATTGA
85058887 AGATAGTCTAATTGA
1 AGATAGTCTAATTGA
85058902 A
1 A
85058903 CTTAAATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.32
Consensus pattern (15 bp):
AGATAGTCTAATTGA
Found at i:85060049 original size:24 final size:24
Alignment explanation
Indices: 85060021--85060068 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
85060011 CTTAAATTCC
* * * *
85060021 TCCATGAATTTCTCCTTTCATCAT
1 TCCATAAATTACTCCCTCCATCAT
85060045 TCCATAAATTACTCCCTCCATCAT
1 TCCATAAATTACTCCCTCCATCAT
85060069 GCTTCGACAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.25, C:0.33, G:0.02, T:0.40
Consensus pattern (24 bp):
TCCATAAATTACTCCCTCCATCAT
Found at i:85061844 original size:149 final size:149
Alignment explanation
Indices: 85061569--85061868 Score: 555
Period size: 149 Copynumber: 2.0 Consensus size: 149
85061559 CTTGATTGCC
*
85061569 ATAACCAACTTATCATTTGGAAGTAAAGATCCACTTTCAATGATCGATTCGAGTTTAGAGTGTAC
1 ATAACCAACTTATCATTTGGAAGTAAAGATCCACTTTCAAGGATCGATTCGAGTTTAGAGTGTAC
85061634 CGAGGCTAAGGCTAAGCATTCACATATTTGATTTACCAATTTAATTTAAATTACTTAATTTTATT
66 CGAGGCTAAGGCTAAGCATTCACATATTTGATTTACCAATTTAATTTAAATTACTTAATTTTATT
85061699 TTGCAACTATCATTCTGTT
131 TTGCAACTATCATTCTGTT
* * * *
85061718 ATAAGCAACTTATCGTTTGGAAGTAAATATCCACTTTCAAGGATTGATTCGAGTTTAGAGTGTAC
1 ATAACCAACTTATCATTTGGAAGTAAAGATCCACTTTCAAGGATCGATTCGAGTTTAGAGTGTAC
85061783 CGAGGCTAAGGCTAAGCATTCACATATTTGATTTACCAATTTAATTTAAATTACTTAATTTTATT
66 CGAGGCTAAGGCTAAGCATTCACATATTTGATTTACCAATTTAATTTAAATTACTTAATTTTATT
85061848 TTGCAACTATCATTCTGTT
131 TTGCAACTATCATTCTGTT
85061867 AT
1 AT
85061869 TATTTCACTT
Statistics
Matches: 146, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 146 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (149 bp):
ATAACCAACTTATCATTTGGAAGTAAAGATCCACTTTCAAGGATCGATTCGAGTTTAGAGTGTAC
CGAGGCTAAGGCTAAGCATTCACATATTTGATTTACCAATTTAATTTAAATTACTTAATTTTATT
TTGCAACTATCATTCTGTT
Found at i:85062448 original size:3 final size:3
Alignment explanation
Indices: 85062440--85062500 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
85062430 TGTATATTTA
*
85062440 TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
85062488 TCT TCT TCT TCT T
1 TCT TCT TCT TCT T
85062501 AAATCTTAGC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:85063880 original size:18 final size:18
Alignment explanation
Indices: 85063839--85063874 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
85063829 ATTGCATTCT
*
85063839 ATTTTTGTTTTTAGTTTA
1 ATTTTTGTTTTTAATTTA
85063857 ATTTTTGTTTTCTAATTT
1 ATTTTTGTTTT-TAATTT
85063875 TTTTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.17, C:0.03, G:0.08, T:0.72
Consensus pattern (18 bp):
ATTTTTGTTTTTAATTTA
Found at i:85065639 original size:67 final size:67
Alignment explanation
Indices: 85065530--85065663 Score: 241
Period size: 67 Copynumber: 2.0 Consensus size: 67
85065520 TTTCTTGAAC
85065530 TTTTCAAACAATTGCATATCAACTTACCTTTTGTTGAAGCTATTTCACAGATGCCCATATATGTA
1 TTTTCAAACAATTGCATATCAACTTACCTTTTGTTGAAGCTATTTCACAGATGCCCATATATGTA
85065595 AA
66 AA
* **
85065597 TTTTCAAACAATTGCATATCAACTTACCTTTTGTTGAGGCTATTTCGTAGATGCCCATATATGTA
1 TTTTCAAACAATTGCATATCAACTTACCTTTTGTTGAAGCTATTTCACAGATGCCCATATATGTA
85065662 AA
66 AA
85065664 AAATTTTAAG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (67 bp):
TTTTCAAACAATTGCATATCAACTTACCTTTTGTTGAAGCTATTTCACAGATGCCCATATATGTA
AA
Found at i:85073552 original size:21 final size:22
Alignment explanation
Indices: 85073526--85073584 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
85073516 GTTTTAATAA
*
85073526 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
85073547 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
85073569 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
85073585 GATTTAGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:85076541 original size:66 final size:65
Alignment explanation
Indices: 85076459--85076587 Score: 197
Period size: 65 Copynumber: 2.0 Consensus size: 65
85076449 TGATTAAACT
* *
85076459 TAATCATTTTAATATTAAATTAATATAATCT-TTATGATAAATATTAAATTAAATTTAATATTAA
1 TAATCAATTTAATATTAAATTAATAT-A-CTATTAAGATAAATATTAAATTAAATTTAATATTAA
85076523 GA
64 GA
* *
85076525 TAATCAATTTAATATTAAATTAATATACTATTAAGATAAGTATTAAATTTAATTTAATATTAA
1 TAATCAATTTAATATTAAATTAATATACTATTAAGATAAATATTAAATTAAATTTAATATTAA
85076588 ACTATTAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
64 2 0.03
65 31 0.53
66 25 0.43
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (65 bp):
TAATCAATTTAATATTAAATTAATATACTATTAAGATAAATATTAAATTAAATTTAATATTAAGA
Found at i:85076548 original size:20 final size:20
Alignment explanation
Indices: 85076451--85076548 Score: 72
Period size: 20 Copynumber: 4.5 Consensus size: 20
85076441 TTCAACTATG
*
85076451 ATTAAACTTAATCATTTTAAT
1 ATTAAA-TTAATCAATTTAAT
* *
85076472 ATTAAATTAATATAATCTTTAT
1 ATTAAATTAAT-CAAT-TTAAT
* *
85076494 GATAAATATTAAATTAAATTTAAT
1 -ATTAA-ATT-AA-TCAATTTAAT
85076518 ATTAAGA-TAATCAATTTAAT
1 ATTAA-ATTAATCAATTTAAT
85076538 ATTAAATTAAT
1 ATTAAATTAAT
85076549 ATACTATTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
19 1 0.02
20 23 0.38
21 10 0.16
22 5 0.08
23 9 0.15
24 7 0.11
25 5 0.08
26 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (20 bp):
ATTAAATTAATCAATTTAAT
Found at i:85077867 original size:23 final size:23
Alignment explanation
Indices: 85077837--85077885 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
85077827 ACTATAAACG
85077837 TCACAAACGGATTCAGAATTAAT
1 TCACAAACGGATTCAGAATTAAT
85077860 TCACAAACGGATTCAGAATTAAT
1 TCACAAACGGATTCAGAATTAAT
85077883 TCA
1 TCA
85077886 TCTTAGGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (23 bp):
TCACAAACGGATTCAGAATTAAT
Found at i:85078816 original size:22 final size:22
Alignment explanation
Indices: 85078791--85078835 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
85078781 TCTCCCCATT
*
85078791 AGGCATCGGTGTCGCAACACCC
1 AGGCATCGATGTCGCAACACCC
* * *
85078813 AGGCTTCGATGTTGCGACACCC
1 AGGCATCGATGTCGCAACACCC
85078835 A
1 A
85078836 AAATAGTGGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (22 bp):
AGGCATCGATGTCGCAACACCC
Found at i:85079968 original size:7 final size:7
Alignment explanation
Indices: 85079958--85080001 Score: 88
Period size: 7 Copynumber: 6.3 Consensus size: 7
85079948 TCATAAATGT
85079958 ATGTTCA
1 ATGTTCA
85079965 ATGTTCA
1 ATGTTCA
85079972 ATGTTCA
1 ATGTTCA
85079979 ATGTTCA
1 ATGTTCA
85079986 ATGTTCA
1 ATGTTCA
85079993 ATGTTCA
1 ATGTTCA
85080000 AT
1 AT
85080002 ATAACATTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (7 bp):
ATGTTCA
Found at i:85080525 original size:17 final size:18
Alignment explanation
Indices: 85080505--85080545 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
85080495 ACAACTATAT
85080505 TTTAAAAGAAGT-TAAAA
1 TTTAAAAGAAGTGTAAAA
* *
85080522 TTT-AAAGAATTGTAAAT
1 TTTAAAAGAAGTGTAAAA
85080539 TTTAAAA
1 TTTAAAA
85080546 TTTCATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 7 0.35
17 10 0.50
18 3 0.15
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (18 bp):
TTTAAAAGAAGTGTAAAA
Found at i:85088328 original size:19 final size:21
Alignment explanation
Indices: 85088296--85088334 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
85088286 TTAAGTCGTT
85088296 TTTTTTTGCAAATTTTTATAA
1 TTTTTTTGCAAATTTTTATAA
85088317 TTTTTTT-C-AATTTTTATA
1 TTTTTTTGCAAATTTTTATA
85088335 TGTTATTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (21 bp):
TTTTTTTGCAAATTTTTATAA
Found at i:85093337 original size:22 final size:22
Alignment explanation
Indices: 85093289--85093337 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
85093279 TGTTAATATT
* *
85093289 ATTAACTAATTATAAATTTTTA
1 ATTAACTAATTATAAAATTTAA
* * *
85093311 TTTAATTAATTTTAAAATTTAA
1 ATTAACTAATTATAAAATTTAA
85093333 ATTAA
1 ATTAA
85093338 ACACTGAAAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTAACTAATTATAAAATTTAA
Found at i:85095952 original size:4 final size:4
Alignment explanation
Indices: 85095943--85095972 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
85095933 TACTCCAATT
85095943 TTTA TTTA TTTA TTTA TTTA TTT- TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
85095973 TTATAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTA
Found at i:85096765 original size:45 final size:45
Alignment explanation
Indices: 85096715--85096821 Score: 169
Period size: 45 Copynumber: 2.4 Consensus size: 45
85096705 GTAACGATAG
* *
85096715 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCGGTAA
* * *
85096760 CAGTAACGGTAACAATATTCGACACACAAAGTGTTGAATCGGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCGGTAA
85096805 CAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
85096822 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCGGTAA
Found at i:85096816 original size:12 final size:12
Alignment explanation
Indices: 85096799--85096823 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85096789 AGTGTTGAAT
85096799 CGGTAACAGTAA
1 CGGTAACAGTAA
85096811 CGGTAACAGTAA
1 CGGTAACAGTAA
85096823 C
1 C
85096824 AGTAGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:85097888 original size:5 final size:5
Alignment explanation
Indices: 85097878--85097919 Score: 70
Period size: 5 Copynumber: 8.8 Consensus size: 5
85097868 TTGTTTCTTT
85097878 TATAA TATAA TATAA TATAA TATAA TAT-A -ATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
85097920 CTTATTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 31 0.89
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:85098569 original size:26 final size:25
Alignment explanation
Indices: 85098518--85098586 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
85098508 AGAAACAGAA
* * *
85098518 AGAAATAGAATAGAAATGAAACAGGG
1 AGAAAAAGAA-AGAAAAGAAAAAGGG
85098544 AGAAAAAGAAAGAAAAGAAAAAAGGG
1 AGAAAAAGAAAGAAAAG-AAAAAGGG
85098570 A-AAGAAAGAAATGAAAA
1 AGAA-AAAGAAA-GAAAA
85098587 ATTAAGGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 8 0.22
26 24 0.65
27 5 0.14
ACGTcount: A:0.68, C:0.01, G:0.25, T:0.06
Consensus pattern (25 bp):
AGAAAAAGAAAGAAAAGAAAAAGGG
Found at i:85099399 original size:18 final size:18
Alignment explanation
Indices: 85099376--85099658 Score: 167
Period size: 18 Copynumber: 15.3 Consensus size: 18
85099366 AAATAATTAT
85099376 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
85099394 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
85099412 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
85099430 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* *
85099456 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
85099474 TTATTTAGTAA-AATCAG
1 TTATTCAGTAACAGTCAG
* * * * *
85099491 ATATTTAGTAGCAATTAAG
1 TTATTCAGTAAC-AGTCAG
*
85099510 TTATTCAGTAACAGTCAT
1 TTATTCAGTAACAGTCAG
* *
85099528 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAGTCAG
* *
85099546 TTATTCAGTAA-TGATCAT
1 TTATTCAGTAACAG-TCAG
* *
85099564 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
85099582 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* *
85099600 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
85099618 TTATTCAATAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * *
85099636 TTATTCAGAAATAATCAG
1 TTATTCAGTAACAGTCAG
85099654 TTATT
1 TTATT
85099659 TTATACATTT
Statistics
Matches: 201, Mismatches: 50, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
17 14 0.07
18 156 0.78
19 15 0.07
21 2 0.01
22 1 0.00
23 2 0.01
26 11 0.05
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:85099418 original size:36 final size:36
Alignment explanation
Indices: 85099376--85099658 Score: 192
Period size: 36 Copynumber: 7.6 Consensus size: 36
85099366 AAATAATTAT
* *
85099376 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
85099412 TTATTCAATAATAACCAGTTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * *
85099448 TTGATCGGTTATCCAGTAACAGTCAATTATTTAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCA-A
* * * * *
85099492 -TATTTAGTAGCAATTAAGTTATTCAGTAACAGTCAT
1 TTATTCAGTAACAA-TCAGTTATTCAGTAACAATCAA
* ** *
85099528 TTATTCAGTGACAATCAGTTATTCAGTAATGATCAT
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
85099564 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
85099600 TTATCCAGTAACAGTCAATTATTCAATAACAGTCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* *
85099636 TTATTCAGAAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
85099659 TTATACATTT
Statistics
Matches: 186, Mismatches: 49, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
35 6 0.03
36 138 0.74
37 16 0.09
42 2 0.01
43 6 0.03
44 18 0.10
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:85099568 original size:54 final size:54
Alignment explanation
Indices: 85099456--85099658 Score: 187
Period size: 54 Copynumber: 3.8 Consensus size: 54
85099446 AATTGATCGG
* * * * * * *
85099456 TTATCCAGTAACAGTCAATTATTTAGTAA-AATCAGATATTTAGTAGCAATTAA
1 TTATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
* * * *
85099509 GTTATTCAGTAACAGTCATTTATTCAGTGACAATCAGTTATTCAGTAA-TGATCAT
1 -TTATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATTCAGTAACAG-TCAA
* * * * *
85099564 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTA-TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAATTATTCAGTAACAATC-AGTTATTCAGTAACAGTCAA
* * *
85099618 TTATTCAATAACAGTCAATTATTCAGAAATAATCAGTTATT
1 TTATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATT
85099659 TTATACATTT
Statistics
Matches: 117, Mismatches: 27, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 98 0.84
55 18 0.15
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (54 bp):
TTATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATTCAGTAACAGTCAA
Found at i:85099833 original size:6 final size:6
Alignment explanation
Indices: 85099822--85099846 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
85099812 ACAAATCCGA
85099822 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
85099847 TTCAACACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:85099883 original size:45 final size:45
Alignment explanation
Indices: 85099827--85099936 Score: 193
Period size: 45 Copynumber: 2.4 Consensus size: 45
85099817 TCCGAAACAG
85099827 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGA
* * *
85099872 TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGA
85099917 TAACAGTAACAGTAACAGTA
1 TAACAGTAACAGTAACAGTA
85099937 ACAGTAGTCG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGA
Found at i:85099927 original size:6 final size:6
Alignment explanation
Indices: 85099916--85099942 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
85099906 TGCTGAATCG
85099916 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
85099943 GTCGGCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:85099932 original size:51 final size:49
Alignment explanation
Indices: 85099822--85099951 Score: 178
Period size: 45 Copynumber: 2.7 Consensus size: 49
85099812 ACAAATCCGA
*
85099822 AACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
1 AACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCG
*
85099871 ---A-TAACGGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCGG
1 AACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC-G
* *
85099917 TAACAGTAACAGTAACAGTAACAGTAGTCGGCACA
1 -AACAGTAACAGTAACAGTAACAGTATTCGACACA
85099952 TAAGTGCCTG
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 41 0.59
46 2 0.03
50 1 0.01
51 26 0.37
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.18
Consensus pattern (49 bp):
AACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCG
Found at i:85101784 original size:27 final size:26
Alignment explanation
Indices: 85101754--85101929 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
85101744 AATTGTACAG
85101754 CACTAAGTGTGCGATTTGACTATGTTA
1 CACTAAGTGTGCGATTTGACTATG-TA
** * *
85101781 CACTAAGTGTGCGAAATGAATATGATG
1 CACTAAGTGTGCGATTTGACTATG-TA
* * **
85101808 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATG-TA
85101835 CACTAAGTGTGCGAGTTTGACTATGTA
1 CACTAAGTGTGCGA-TTTGACTATGTA
* *
85101862 GCACTAAGTGTGCGATTTGATTACGTA
1 -CACTAAGTGTGCGATTTGACTATGTA
* * *
85101889 GCACTAAGTGTGCGAGTTGATTATATA
1 -CACTAAGTGTGCGATTTGACTATGTA
*
85101916 GCACTGAGTGTGCG
1 -CACTAAGTGTGCG
85101930 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
CACTAAGTGTGCGATTTGACTATGTA
Found at i:85101813 original size:54 final size:54
Alignment explanation
Indices: 85101752--85101929 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
85101742 TAAATTGTAC
*
85101752 AGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGAATTGAATATGAT
* * ** * *
85101807 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGA-ATTGAATATGAT
* * * *
85101861 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTA-CACTAAGTGTGCGAATTGAATATGAT
*
85101915 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85101930 GACTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
54 60 0.59
55 42 0.41
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTACACTAAGTGTGCGAATTGAATATGAT
Found at i:85101867 original size:82 final size:81
Alignment explanation
Indices: 85101753--85101908 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
85101743 AAATTGTACA
*
85101753 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
85101817 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
85101834 GCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
85101898 GTGCGAGTTGA
64 GTGCGAATTGA
85101909 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:85101920 original size:82 final size:81
Alignment explanation
Indices: 85101749--85101929 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
85101739 GATTAAATTG
*
85101749 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
85101814 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
85101830 TGCGGCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
85101893 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
85101912 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85101930 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85104856 original size:16 final size:17
Alignment explanation
Indices: 85104835--85104866 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
85104825 TTAAACCTCA
85104835 ATTTTC-CCTTTCTTTT
1 ATTTTCTCCTTTCTTTT
85104851 ATTTTCTCCTTTCTTT
1 ATTTTCTCCTTTCTTT
85104867 CTTTCTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTCTCCTTTCTTTT
Found at i:85111484 original size:26 final size:26
Alignment explanation
Indices: 85111448--85111501 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
85111438 TCAATCTAAC
85111448 ATCTGATTTATAAAAGGCAACGAAAA
1 ATCTGATTTATAAAAGGCAACGAAAA
*
85111474 ATCTGATTTATAAAAGGCAATGAAAA
1 ATCTGATTTATAAAAGGCAACGAAAA
85111500 AT
1 AT
85111502 GGTCCTTCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (26 bp):
ATCTGATTTATAAAAGGCAACGAAAA
Found at i:85129385 original size:9 final size:9
Alignment explanation
Indices: 85129324--85129390 Score: 80
Period size: 9 Copynumber: 7.4 Consensus size: 9
85129314 TTTGGTTAAA
*
85129324 AATTAACCG
1 AATTACCCG
*
85129333 AATTAACCG
1 AATTACCCG
85129342 AATTACCCG
1 AATTACCCG
*
85129351 AATTACTCG
1 AATTACCCG
*
85129360 AATTAACCG
1 AATTACCCG
85129369 AATTACCCG
1 AATTACCCG
* *
85129378 AATCACCCA
1 AATTACCCG
85129387 AATT
1 AATT
85129391 TGAATCATTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.40, C:0.27, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:85129390 original size:27 final size:27
Alignment explanation
Indices: 85129333--85129390 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
85129323 AAATTAACCG
* * *
85129333 AATTAACCGAATTACCCGAATTACTCG
1 AATTAACCGAATTACCCGAATCACCCA
85129360 AATTAACCGAATTACCCGAATCACCCA
1 AATTAACCGAATTACCCGAATCACCCA
85129387 AATT
1 AATT
85129391 TGAATCATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.24
Consensus pattern (27 bp):
AATTAACCGAATTACCCGAATCACCCA
Found at i:85129416 original size:17 final size:17
Alignment explanation
Indices: 85129396--85129459 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
85129386 AAATTTGAAT
85129396 CATTACATAATTAAAAA
1 CATTACATAATTAAAAA
** *
85129413 CATTACATAAGTCTTTGAAT
1 CATTACATAA---TTAAAAA
* *
85129433 CACTAAATAATTAAAAA
1 CATTACATAATTAAAAA
85129450 CATTACATAA
1 CATTACATAA
85129460 GTCTTGAAAT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
17 22 0.65
20 12 0.35
ACGTcount: A:0.52, C:0.14, G:0.03, T:0.31
Consensus pattern (17 bp):
CATTACATAATTAAAAA
Found at i:85129430 original size:37 final size:37
Alignment explanation
Indices: 85129389--85129464 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
85129379 ATCACCCAAA
* *
85129389 TTTGAATCATTACATAATTAAAAACATTACATAAGTC
1 TTTGAATCACTAAATAATTAAAAACATTACATAAGTC
85129426 TTTGAATCACTAAATAATTAAAAACATTACATAAGTC
1 TTTGAATCACTAAATAATTAAAAACATTACATAAGTC
85129463 TT
1 TT
85129465 GAAATTAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.36
Consensus pattern (37 bp):
TTTGAATCACTAAATAATTAAAAACATTACATAAGTC
Found at i:85131442 original size:46 final size:46
Alignment explanation
Indices: 85131375--85131463 Score: 169
Period size: 46 Copynumber: 1.9 Consensus size: 46
85131365 GTAGTTCGTG
*
85131375 AAGGAATATGAAACCTAGGACATGCCACAACCATAAATTTATTTAA
1 AAGGAATATAAAACCTAGGACATGCCACAACCATAAATTTATTTAA
85131421 AAGGAATATAAAACCTAGGACATGCCACAACCATAAATTTATT
1 AAGGAATATAAAACCTAGGACATGCCACAACCATAAATTTATT
85131464 AAAGCCTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (46 bp):
AAGGAATATAAAACCTAGGACATGCCACAACCATAAATTTATTTAA
Found at i:85135158 original size:18 final size:18
Alignment explanation
Indices: 85135135--85135170 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
85135125 TTTGCTATTA
*
85135135 TGTTTCTTTGTTTCTTTT
1 TGTTTCTTTATTTCTTTT
85135153 TGTTTCTTTATTTCTTTT
1 TGTTTCTTTATTTCTTTT
85135171 ATTTACCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.03, C:0.11, G:0.08, T:0.78
Consensus pattern (18 bp):
TGTTTCTTTATTTCTTTT
Found at i:85135324 original size:13 final size:14
Alignment explanation
Indices: 85135308--85135336 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
85135298 CATAATTTGA
85135308 TTTATTTA-TTTAT
1 TTTATTTACTTTAT
85135321 TTTATTTACTTTAT
1 TTTATTTACTTTAT
85135335 TT
1 TT
85135337 AATTAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTACTTTAT
Found at i:85139614 original size:47 final size:46
Alignment explanation
Indices: 85139548--85139813 Score: 263
Period size: 47 Copynumber: 5.7 Consensus size: 46
85139538 ATTGTTGGCT
*
85139548 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACA-GATGAGAGCC
* * *
85139594 AGTGTAAGACGATGTCTGGGACATGGCATC-GACATTGAGATGAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGCCA--CAGATGAGAGCC
* *
85139642 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-AGATG-AGAGCC
* ** * *
85139688 AGTGTAAGACATGTCTGGGACATGG-ATCCGTTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-AGATGAGAGCC
* *** *
85139734 AGTGTAAGATCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACAGATGAGAGCC
*
85139781 AGTGTAAAACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
85139814 ATTTTACCCA
Statistics
Matches: 183, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 67 0.37
47 87 0.48
48 27 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACAGATGAGAGCC
Found at i:85139763 original size:94 final size:92
Alignment explanation
Indices: 85139545--85139810 Score: 319
Period size: 94 Copynumber: 2.8 Consensus size: 92
85139535 GTTATTGTTG
* *
85139545 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCCAGTGTAAGACGATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGAC-ATG
85139608 TCTGGGACATGGCATCGACATTGAGATGAGA
63 TCTGGGACATGGCATC-ACATTGAGATGAGA
*
85139639 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTCT
* *
85139704 GGGACATGG-ATC-CGTTACGAGATGATA
66 GGGACATGGCATCACATT--GAGATGAGA
* * * *
85139731 G-TCAGTGTAAGATCATGTCTGGGACATGGCATC-GACTTGAGATGTGAGCCAGTGTAAAACCAT
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CAT
85139794 GTCTGGGACATGGCATC
62 GTCTGGGACATGGCATC
85139811 GGCATTTTAC
Statistics
Matches: 153, Mismatches: 10, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
90 3 0.02
91 1 0.01
92 21 0.14
93 50 0.33
94 73 0.48
95 5 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTCT
GGGACATGGCATCACATTGAGATGAGA
Found at i:85139800 original size:140 final size:141
Alignment explanation
Indices: 85139548--85139813 Score: 387
Period size: 140 Copynumber: 1.9 Consensus size: 141
85139538 ATTGTTGGCT
* *
85139548 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACGATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCCGCCACATGATGAGAGCCAGTGTAAGACGATGTCTGG
* *
85139613 GACATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGATGAGAGCCAGTGTAAAACATGTCTGGGACATGGCATCGGCCTCG
85139677 AGACGTAAGCC
131 AGACGTAAGCC
* ** * *
85139688 AGTGTAAGACATGTCTGGGACATGGATCCGTTACGA-GATGATAGTCAGTGTAAGATC-ATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCCGCCAC-ATGATGAGAGCCAGTGTAAGA-CGATGTCT
*
85139751 GGGACATGGCATCGAC-TTGAGATGTGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGC
64 GGGACATGGCATCGACATTGAGATGAGAGCCAGTGTAAAA-CATGTCTGGGACATGGCATCGGC
85139814 ATTTTACCCA
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
139 20 0.18
140 82 0.73
141 10 0.09
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCCGCCACATGATGAGAGCCAGTGTAAGACGATGTCTGG
GACATGGCATCGACATTGAGATGAGAGCCAGTGTAAAACATGTCTGGGACATGGCATCGGCCTCG
AGACGTAAGCC
Found at i:85141361 original size:36 final size:36
Alignment explanation
Indices: 85141320--85141432 Score: 104
Period size: 36 Copynumber: 3.2 Consensus size: 36
85141310 CGACAATAAA
* *
85141320 TGTGCCCTGCACTAGTCGGTAGAATCGACAAATATG
1 TGTGCCCTGCACTAGTCAGTAAAATCGACAAATATG
* * **
85141356 TGTG-CCTAGCACTGGTCAGTATAATCGAC-AATAAA
1 TGTGCCCT-GCACTAGTCAGTAAAATCGACAAATATG
** * * *
85141391 TGCACCCTGCGCTAGTTAGTAAAACCGACAAATATG
1 TGTGCCCTGCACTAGTCAGTAAAATCGACAAATATG
85141427 TGTGCC
1 TGTGCC
85141433 TACACTGGTT
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
35 25 0.43
36 33 0.57
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (36 bp):
TGTGCCCTGCACTAGTCAGTAAAATCGACAAATATG
Found at i:85141406 original size:71 final size:70
Alignment explanation
Indices: 85141307--85141495 Score: 252
Period size: 70 Copynumber: 2.7 Consensus size: 70
85141297 TGGCCGATAA
* * * * *
85141307 AACCGACAATAAATGTGCCCTGCACTAGTCGGTAGAATCGACAAATATGTGTGCCTAGCACTGGT
1 AACCGACAATAAATGCGCCCTGCGCTAGTTGGTAAAACCGACAAATATGTGTGCCTA-CACTGGT
85141372 CAGTAT
65 CAGTAT
* * * *
85141378 AATCGACAATAAATGCACCCTGCGCTAGTTAGTAAAACCGACAAATATGTGTGCCTACACTGGTT
1 AACCGACAATAAATGCGCCCTGCGCTAGTTGGTAAAACCGACAAATATGTGTGCCTACACTGGTC
*
85141443 GGTAT
66 AGTAT
* * *
85141448 AACCGACAATAAATGCGCCTTGAGCTGGTTGGTAAAACCGACAAATAT
1 AACCGACAATAAATGCGCCCTGCGCTAGTTGGTAAAACCGACAAATAT
85141496 ATCTGAAATC
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
70 53 0.52
71 49 0.48
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (70 bp):
AACCGACAATAAATGCGCCCTGCGCTAGTTGGTAAAACCGACAAATATGTGTGCCTACACTGGTC
AGTAT
Found at i:85141452 original size:35 final size:35
Alignment explanation
Indices: 85141345--85141495 Score: 99
Period size: 35 Copynumber: 4.3 Consensus size: 35
85141335 TCGGTAGAAT
* * *
85141345 CGACAAATATGTGTGCCTAGCACTGGTCAGTATAAT
1 CGACAAATATGTGTGCCTA-CACTGGTTAGTAAAAC
* *** * * *
85141381 CGACAATAAATG-CACCCTGCGCTAGTTAGTAAAAC
1 CGACAA-ATATGTGTGCCTACACTGGTTAGTAAAAC
* *
85141416 CGACAAATATGTGTGCCTACACTGGTTGGTATAAC
1 CGACAAATATGTGTGCCTACACTGGTTAGTAAAAC
** * ** *
85141451 CGAC-AATAAATGCGCCTTGAGCTGGTTGGTAAAAC
1 CGACAAATATGTGTGCCTACA-CTGGTTAGTAAAAC
85141486 CGACAAATAT
1 CGACAAATAT
85141496 ATCTGAAATC
Statistics
Matches: 85, Mismatches: 26, Indels: 8
0.71 0.22 0.07
Matches are distributed among these distances:
34 15 0.18
35 53 0.62
36 13 0.15
37 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (35 bp):
CGACAAATATGTGTGCCTACACTGGTTAGTAAAAC
Found at i:85148620 original size:32 final size:32
Alignment explanation
Indices: 85148562--85148635 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
85148552 CCCACCTTGC
* * *
85148562 AATGATTAACTAGGGTTTAGAGACATGGTTAT
1 AATGATTAATTTGGGTTTAGACACATGGTTAT
*
85148594 AATGGTTAATTTGGGTTTAGACACATGGTTAT
1 AATGATTAATTTGGGTTTAGACACATGGTTAT
*
85148626 AGTGATTAAT
1 AATGATTAAT
85148636 GATGGTCTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.38
Consensus pattern (32 bp):
AATGATTAATTTGGGTTTAGACACATGGTTAT
Found at i:85153680 original size:117 final size:117
Alignment explanation
Indices: 85153552--85154062 Score: 817
Period size: 117 Copynumber: 4.3 Consensus size: 117
85153542 CAAACTTTAG
*
85153552 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTTTAAATTATATTTTATAGTATTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
*
85153617 TATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
85153669 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTA
1 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
*
85153734 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
63 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
85153789 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
* *
85153854 TATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTT
66 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
85153906 ATTAAATTATATA-TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
* * * * * *
85153970 TCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
63 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
85154025 ATTAAATTATATATTTTAATTAAAATATATTTAATAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAAT
85154063 AATTATGTTT
Statistics
Matches: 370, Mismatches: 17, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
116 15 0.04
117 132 0.36
118 2 0.01
119 94 0.25
120 127 0.34
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (117 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
Found at i:85153736 original size:120 final size:120
Alignment explanation
Indices: 85153552--85154076 Score: 848
Period size: 120 Copynumber: 4.4 Consensus size: 120
85153542 CAAACTTTAG
85153552 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
85153614 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
85153669 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
85153734 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
85153789 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
* *
85153851 TTATATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
85153906 ATTAAATTATATA-TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
* * * * * *
85153970 TCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
85154025 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTTAAAT
85154077 ATGATTAAAT
Statistics
Matches: 381, Mismatches: 19, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
116 15 0.04
117 125 0.33
118 2 0.01
119 92 0.24
120 142 0.37
121 5 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
Found at i:85153816 original size:237 final size:236
Alignment explanation
Indices: 85153552--85154062 Score: 869
Period size: 236 Copynumber: 2.2 Consensus size: 236
85153542 CAAACTTTAG
*
85153552 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTTTAAATTATATTTTATAGTATTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
** *
85153617 TATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
66 TATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
* * *
85153682 TTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTATTATATATTATGA
131 -TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTATATAGTATCATATATTATGA
* * * *
85153747 TTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
195 TTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
85153789 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
85153854 TATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
66 TATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
* *
85153919 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTTTATAGTATCATATATTATTAT
131 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTATATAGTATCATATATTATGAT
*
85153984 TTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
196 TTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
* *
85154025 ATTAAATTATATATTTTAATTAAAATATATTTAATAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAAT
85154063 AATTATGTTT
Statistics
Matches: 258, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
236 132 0.51
237 126 0.49
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (236 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
TATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATATTATATAGTATCATATATTATGAT
TTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
Found at i:85153894 original size:15 final size:15
Alignment explanation
Indices: 85153874--85153906 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
85153864 TTTTAGAAAA
85153874 TTAATA-TAAGAATAT
1 TTAATATTAAGAAT-T
85153889 TTAATATTAAGAATT
1 TTAATATTAAGAATT
85153904 TTA
1 TTA
85153907 TTAAATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
TTAATATTAAGAATT
Found at i:85153913 original size:38 final size:38
Alignment explanation
Indices: 85153738--85153919 Score: 120
Period size: 38 Copynumber: 4.7 Consensus size: 38
85153728 ATAGTATTAT
* *
85153738 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATTAATATAAGAATATTTA
**** *
85153775 ATATTAAGAATTTTATTAAATT-ATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTAATATAAGAATATT---TA
* * * * * * *
85153815 ATATTTAATAATTATGTTAAATTATATTTTATAGTA-TTA
1 ATA-TTAAGAATTTTATTAAATTA-ATATAAGAATATTTA
* **
85153854 TATATTATG-ATTTTAGAAAATTAATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATTAATATAAGAATATTTA
85153892 ATATTAAGAATTTTATTAAATTATATAT
1 ATATTAAGAATTTTATTAAATTA-ATAT
85153920 TTTATTAAAT
Statistics
Matches: 106, Mismatches: 28, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
37 30 0.28
38 38 0.36
39 8 0.08
40 7 0.07
41 16 0.15
42 1 0.01
43 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.51
Consensus pattern (38 bp):
ATATTAAGAATTTTATTAAATTAATATAAGAATATTTA
Found at i:85153921 original size:17 final size:17
Alignment explanation
Indices: 85153901--85153934 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
85153891 AATATTAAGA
85153901 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
85153918 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
85153935 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:85154037 original size:61 final size:60
Alignment explanation
Indices: 85153850--85154039 Score: 156
Period size: 61 Copynumber: 3.2 Consensus size: 60
85153840 ATTTTATAGT
* * * * *
85153850 ATTATATATTATGATTTTAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTATTATTTTAGTAAATTAA-ATAAAAATATTGATTATTAAGAATTTTATTAA
** * * * * * * *
85153911 ATTATATATT-TTATTAAATTATATTTAATAATAAT-TATG-TTA-AAATATATTTTA-TAGT
1 ATTATATATTATTATTTTAGTAAATTAAATAAAAATAT-TGATTATTAAGA-ATTTTATTA-A
* *
85153969 ATCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTTATTAA
1 ATTATATATTATTATTTTAGTAAATT-AAATAAAAATATTGATTATTAAGAATTTTATTAA
85154030 ATTATATATT
1 ATTATATATT
85154040 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
57 5 0.05
58 18 0.19
59 19 0.20
60 19 0.20
61 29 0.31
62 5 0.05
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (60 bp):
ATTATATATTATTATTTTAGTAAATTAAATAAAAATATTGATTATTAAGAATTTTATTAA
Found at i:85154048 original size:18 final size:17
Alignment explanation
Indices: 85154020--85154054 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
85154010 ATTATTAAGA
*
85154020 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
85154037 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
85154055 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:85154304 original size:45 final size:44
Alignment explanation
Indices: 85154219--85154309 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
85154209 ACTTCTATTC
*
85154219 CATTCAACCAAACACAAGATTACTATTACGCCTATATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTATATTCCATTA
*** * *
85154263 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTATATTCCATTA
85154308 CA
1 CA
85154310 CCTCTATTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTATATTCCATTA
Found at i:85154309 original size:16 final size:16
Alignment explanation
Indices: 85154288--85154357 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
85154278 TTGATTTGCT
*
85154288 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
85154304 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
85154320 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
85154336 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
85154352 AATACA
1 ATTACA
85154358 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:85155255 original size:20 final size:20
Alignment explanation
Indices: 85155218--85155256 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
85155208 AAGGGAAAGA
*
85155218 AAGGAGAAGAGAAGAAGAAG
1 AAGGAGAAGAGAAAAAGAAG
85155238 AAGGAGAACGA-AAAAAGAA
1 AAGGAGAA-GAGAAAAAGAA
85155257 AGAAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.64, C:0.03, G:0.33, T:0.00
Consensus pattern (20 bp):
AAGGAGAAGAGAAAAAGAAG
Found at i:85156698 original size:72 final size:72
Alignment explanation
Indices: 85156574--85156709 Score: 184
Period size: 72 Copynumber: 1.9 Consensus size: 72
85156564 CTGGCGAGCC
* *
85156574 CGGGAAATAGTTATTGCCCGAAAAATTCGGATGATAAGAAGTACCAACCGAATGTGAATGCGATG
1 CGGGAAATAGTCATTGCCCGAAAAATTCGGATGATAAGAAGTACCAACCGAATATGAATGCGATG
85156639 ACAAGCT
66 ACAAGCT
* ** * **
85156646 CGGGAAATAGTCATTGCCTGCCAAA-TCTGGATGATAAGAAGTATCAGTCGAATATGAATGCGAT
1 CGGGAAATAGTCATTGCCCGAAAAATTC-GGATGATAAGAAGTACCAACCGAATATGAATGCGAT
85156710 CGCTCGGACT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
71 2 0.04
72 53 0.96
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (72 bp):
CGGGAAATAGTCATTGCCCGAAAAATTCGGATGATAAGAAGTACCAACCGAATATGAATGCGATG
ACAAGCT
Found at i:85156745 original size:18 final size:18
Alignment explanation
Indices: 85156718--85156757 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
85156708 ATCGCTCGGA
85156718 CTCGGCCTCCACCTGTGC
1 CTCGGCCTCCACCTGTGC
* **
85156736 CTCGGGCTCCGGCTGTGC
1 CTCGGCCTCCACCTGTGC
85156754 CTCG
1 CTCG
85156758 AGCTTCAGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.45, G:0.30, T:0.23
Consensus pattern (18 bp):
CTCGGCCTCCACCTGTGC
Found at i:85158467 original size:18 final size:17
Alignment explanation
Indices: 85158426--85158467 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
85158416 TAAATTTCGG
85158426 TTATTA-ATTTTAATAT
1 TTATTAGATTTTAATAT
85158442 TTGA-TAGATTTTAAATAT
1 TT-ATTAGATTTT-AATAT
85158460 TTATTAGA
1 TTATTAGA
85158468 ATAACTTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.18
17 7 0.32
18 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
TTATTAGATTTTAATAT
Found at i:85158958 original size:14 final size:14
Alignment explanation
Indices: 85158901--85158961 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
85158891 GTATTTTTTA
85158901 TTTTTGTATATTAT
1 TTTTTGTATATTAT
*
85158915 TTTTTAAAATATATTA-
1 TTTTT---GTATATTAT
* *
85158931 TTTTCGTATTTTAT
1 TTTTTGTATATTAT
*
85158945 TTTTTTTATATTAT
1 TTTTTGTATATTAT
85158959 TTT
1 TTT
85158962 AGCAAAAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
13 6 0.17
14 19 0.53
16 4 0.11
17 7 0.19
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTTTGTATATTAT
Found at i:85159220 original size:15 final size:16
Alignment explanation
Indices: 85159189--85159250 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 16
85159179 TAGCACTTTA
*
85159189 TTCGTAT-TTTTTATT
1 TTCGTATATTATTATT
85159204 TTCGTATATTATT-TT
1 TTCGTATATTATTATT
***
85159219 TTAAAATA-TATTATT
1 TTCGTATATTATTATT
*
85159234 TTCGTATTTTATT-TT
1 TTCGTATATTATTATT
85159249 TT
1 TT
85159251 ATATTATTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
14 4 0.11
15 24 0.67
16 8 0.22
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (16 bp):
TTCGTATATTATTATT
Found at i:85159356 original size:149 final size:149
Alignment explanation
Indices: 85158599--85159863 Score: 1889
Period size: 150 Copynumber: 8.5 Consensus size: 149
85158589 ATAAGTAAAA
*
85158599 TATTTTCGTATATTAATTTTTAAAATATATTAATTTT-GTATTTTATTTTTTATATTATTTTAGC
1 TATTTTCGTATATTATTTTTTAAAATATATT-ATTTTCGTATTTTATTTTTTATATTATTTTAGC
* * *
85158663 AAAAAATGTTGCAAATGTATTATTTAAGTTTTTTTTATATTAATTTCATAAATAACCCTAATTTT
65 AAAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTTT
* *
85158728 GGCACTTTCTTCGTATTTTTT
130 AGCACTTTATTCGTA-TTTTT
* * *
85158749 TATTTTCGTATCTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGT
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGC
* * * * **
85158814 ACATAATGTTTCAAATATATTATTTAAGTGTTTTTTATATTTTTTTAATAAATAACCCTGATTTT
65 AAAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTTT
85158879 AGCACTTTATTCGTATTTTT
130 AGCACTTTATTCGTATTTTT
*
85158899 TATTTTTGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTTATATTATTTTAG
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA--TTTTTTATATTATTTTAG
*
85158964 CAAAAAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTAATTTAATAAATAACCCTGATTT
64 CAAAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTT
85159029 TAGCACTTTA-TCGTATTTTT
129 TAGCACTTTATTCGTATTTTT
* * *
85159049 TATTTTCGTATATTATTTTTTAAAATATATTGTTTTTGTATTTTATTTCTTTATATTATTTTAGT
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGC
* * * ** *
85159114 ACATAATGTTTCAAATGTATTATTCAAGTGTTTTTTTATATTTTTTTAATACATAACCCTGATTT
65 AAAAAATGTTTCAAATGTATTATTTAAGT-TTTTTTTATATTAATTTAATAAATAACCCTGATTT
85159179 TAGCACTTTATTCGTATTTTT
129 TAGCACTTTATTCGTATTTTT
85159200 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCA
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCA
* *
85159265 AAAAATGTTTCAAATGTATTATTTAAATTTTTTTTATATTAATTTAATAAATACCCCTGATTTTA
66 AAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTTTA
85159330 GCACTTTATTCGTATTTTT
131 GCACTTTATTCGTATTTTT
* *
85159349 TATTTTCGTATATTATTTTTTAAAATATATTATTTTTGTATATTATTTTTTATATTATTTTAGCA
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCA
*
85159414 AAAAGTGTTTCAAATGTATTATTTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTT
66 AAAAATGTTTCAAATGTATTATTTAAGT-TTTTTTTATATTAATTTAATAAATAACCCTGATTTT
* * *
85159479 GGTACTTTCTTCGTATTTTT
130 AGCACTTTATTCGTATTTTT
* * * *
85159499 TATTTTCGTATCTT-TTTTTT-AAATATATTATTTTCATATATTATTTCTTTATATTATTTTAGT
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGC
* * * * * * *
85159562 ACATAACGTTTTAAATGCATTATTTAAGTGTTTTTTATATT-TTTTAATAAATAACCCTGATTTT
65 AAAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTTT
*
85159626 AGCACTTTATTCCTATTTTT
130 AGCACTTTATTCGTATTTTT
85159646 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTATATTATTTTAGCA
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCA
* *
85159710 AAAAATGTTTCAAATGTATTATTTAA--TTTTTTTATATTAATTTAATAAATAACCCTGACTTTG
66 AAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTTTA
*
85159773 GCACTTTGTTCGTATTTTTT
131 GCACTTTATTCGTA-TTTTT
* * * * *
85159793 TATTTTCGGATTTTATTTTTTAAAATATAATATTTTCATATTTTATTTTTTTATATTATTTTAAC
1 TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTTATATTATTTTAGC
85159858 AAAAAA
65 AAAAAA
85159864 CTCGTCAGCA
Statistics
Matches: 1009, Mismatches: 91, Indels: 31
0.89 0.08 0.03
Matches are distributed among these distances:
145 11 0.01
146 33 0.03
147 134 0.13
148 46 0.05
149 275 0.27
150 284 0.28
151 223 0.22
152 3 0.00
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (149 bp):
TATTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCA
AAAAATGTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGATTTTA
GCACTTTATTCGTATTTTT
Found at i:85159402 original size:12 final size:13
Alignment explanation
Indices: 85159374--85159409 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
85159364 TTTTTTAAAA
85159374 TATATTATTTTTG
1 TATATTATTTTTG
85159387 TATATTATTTTT-
1 TATATTATTTTTG
85159399 TATATTATTTT
1 TATATTATTTT
85159410 AGCAAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TATATTATTTTTG
Found at i:85159539 original size:13 final size:14
Alignment explanation
Indices: 85159521--85159558 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
85159511 TTTTTTTTAA
85159521 ATATATTATTTTC-
1 ATATATTATTTTCT
85159534 ATATATTA-TTTCT
1 ATATATTATTTTCT
*
85159547 TTATATTATTTT
1 ATATATTATTTT
85159559 AGTACATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 4 0.18
13 15 0.68
14 3 0.14
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (14 bp):
ATATATTATTTTCT
Found at i:85160448 original size:3 final size:3
Alignment explanation
Indices: 85160442--85160498 Score: 57
Period size: 3 Copynumber: 20.0 Consensus size: 3
85160432 GCTCCTCCTC
* * *
85160442 CTT CTT CTT C-T CTT CTT -TC CTT CTT CTC CTT CTT -TT CTT TTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
85160487 CTT CTC CTT CTT
1 CTT CTT CTT CTT
85160499 TGTTCCCGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 5 0.12
3 38 0.88
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:85161072 original size:37 final size:39
Alignment explanation
Indices: 85161031--85161113 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
85161021 ATTTTTAAAT
85161031 ATAAAAATGAA-AAATAA-AAA-TTCTTT-AAAATAAAAAA
1 ATAAAAA-GAATAAA-AAGAAATTTCTTTAAAAATAAAAAA
* *
85161068 ATAAAAAGAATAAAAAGAAATTTTTTTAAAAATAAAAAT
1 ATAAAAAGAATAAAAAGAAATTTCTTTAAAAATAAAAAA
85161107 ATAAAAA
1 ATAAAAA
85161114 ATTCTTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
36 5 0.12
37 13 0.32
38 5 0.12
39 17 0.43
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (39 bp):
ATAAAAAGAATAAAAAGAAATTTCTTTAAAAATAAAAAA
Found at i:85161548 original size:40 final size:40
Alignment explanation
Indices: 85161480--85161585 Score: 97
Period size: 40 Copynumber: 2.5 Consensus size: 40
85161470 TTATCCATAT
* * * *
85161480 TTTAGAAAACATAAAAAATTCTTAAAAAATCTTGTGTATTTTTA
1 TTTA-AAAA-ATAAATAATT-TT-AAAAATCTTATGTACTTTGA
* * *
85161524 TTTTTAAAAATATAT-ATTTTAAAAATTTTATGTACTTTGA
1 -TTTAAAAAATAAATAATTTTAAAAATCTTATGTACTTTGA
85161564 TTTAAAAAATAAATAATTTTAA
1 TTTAAAAAATAAATAATTTTAA
85161586 TTTTTAAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
39 12 0.24
40 23 0.45
41 2 0.04
42 3 0.06
43 4 0.08
44 4 0.08
45 3 0.06
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (40 bp):
TTTAAAAAATAAATAATTTTAAAAATCTTATGTACTTTGA
Found at i:85161588 original size:22 final size:21
Alignment explanation
Indices: 85161563--85161605 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
85161553 ATGTACTTTG
85161563 ATTTAAAAAATAAATAATTTTA
1 ATTTAAAAAA-AAATAATTTTA
** *
85161585 ATTTTTAAAAAAATATTTTTA
1 ATTTAAAAAAAAATAATTTTA
85161606 TTTTTAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTAAAAAAAAATAATTTTA
Found at i:85161604 original size:21 final size:21
Alignment explanation
Indices: 85161569--85161613 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
85161559 TTTGATTTAA
85161569 AAAATAAATAATTTTAATTTTT
1 AAAATAAATAATTTT-ATTTTT
*
85161591 AAAA-AAATATTTTTATTTTT
1 AAAATAAATAATTTTATTTTT
85161611 AAA
1 AAA
85161614 CAGATTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.41
21 9 0.41
22 4 0.18
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AAAATAAATAATTTTATTTTT
Found at i:85161694 original size:31 final size:31
Alignment explanation
Indices: 85161633--85161694 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
85161623 GTTTTCATAA
*
85161633 TTTTTATTTTTTAAAATTAAAATTACAGTTT
1 TTTTTATTTTTTAAAATTAAAATAACAGTTT
* * *
85161664 TTTTTGTTTTTTTAAATATAAAA-AATAGTTT
1 TTTTTATTTTTTAAAAT-TAAAATAACAGTTT
85161695 CCCAATGCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (31 bp):
TTTTTATTTTTTAAAATTAAAATAACAGTTT
Found at i:85165659 original size:162 final size:164
Alignment explanation
Indices: 85165263--85165662 Score: 531
Period size: 169 Copynumber: 2.4 Consensus size: 164
85165253 TTTTTACCCC
* * * * * * *
85165263 AAACTCTCAAATCTTTTTACTTTTTCCTCAAAATTTTTACTCTTTCCCACTTTCCCTCCAAAACT
1 AAACACTCAAAACCTTTTA-TTTTCCCCCAAAATTTTTACCCTCTCCCACTTTCCC-CCAAAACT
* *
85165328 TTTATTCCCCTCCCACCTCAATCCTCCAATCTACCCAAAATTCATTTCCCACCAAAATTTTATTC
64 TTTATTCCCCTCCCACCCCAATCCTCCAATCTACCCAAAATTCATTTCCCACCAAAATTTTACTC
*
85165393 TCCCATTTACTTTTTTTTTTCTTCAGAATTTTACTCCTAA
129 TCCCATTTAC----TTTTTTCTTCAAAATTTTACTCCTAA
* *
85165433 AAACCCTCAAAACCTTTTATTTTCCCCCAAAATTTTTACTCC-CTCCCACTTTCCCTCAAAAACT
1 AAACACTCAAAACCTTTTATTTTCCCCCAAAATTTTTAC-CCTCTCCCACTTTCCC-CCAAAACT
* *
85165497 TTTATTCCCCTCCCACCCCAAT-CTCCTAATCTACCCAAAATTCATTTCCTACTAAAATTTTACT
64 TTTATTCCCCTCCCACCCCAATCCTCC-AATCTACCCAAAATTCATTTCCCACCAAAATTTTACT
85165561 CT-CCATTTAC-TTTTTC-TCAAAATTTTACTCCTAA
128 CTCCCATTTACTTTTTTCTTCAAAATTTTACTCCTAA
* *
85165595 AATCACTCAAAACCTTTTATTTTCCCCCCAAATTTTTACCCTCTCCCACTTTCCCCCTAAAACTT
1 AAACACTCAAAACCTTTTATTTTCCCCCAAAATTTTTACCCTCTCCCACTTTCCCCC-AAAACTT
85165660 TTA
65 TTA
85165663 CTTGCTTCTC
Statistics
Matches: 209, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
161 3 0.01
162 76 0.36
163 6 0.03
168 12 0.06
169 95 0.45
170 17 0.08
ACGTcount: A:0.27, C:0.34, G:0.00, T:0.39
Consensus pattern (164 bp):
AAACACTCAAAACCTTTTATTTTCCCCCAAAATTTTTACCCTCTCCCACTTTCCCCCAAAACTTT
TATTCCCCTCCCACCCCAATCCTCCAATCTACCCAAAATTCATTTCCCACCAAAATTTTACTCTC
CCATTTACTTTTTTCTTCAAAATTTTACTCCTAA
Found at i:85166062 original size:18 final size:18
Alignment explanation
Indices: 85166039--85166098 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
85166029 CAAATTCACA
85166039 TTTTATCTTTAAAATAAT
1 TTTTATCTTTAAAATAAT
*
85166057 TTTTAT-TATAAAATTACAT
1 TTTTATCTTTAAAA-TA-AT
* *
85166076 TTTTA-CATTTAATATATT
1 TTTTATC-TTTAAAATAAT
85166094 TTTTA
1 TTTTA
85166099 ATCCCAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 6 0.18
18 14 0.41
19 9 0.26
20 5 0.15
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTATCTTTAAAATAAT
Found at i:85170418 original size:57 final size:57
Alignment explanation
Indices: 85170301--85170416 Score: 157
Period size: 57 Copynumber: 2.0 Consensus size: 57
85170291 TCAGGTCATC
**
85170301 TTCATTTTTATTTTGGAGAAAATCACATTCATTTCCAAATGATTTCATTTCTTTATT
1 TTCATTTTTATTTTGGAGAAAATCACATTCATTTCCAAATGATTTCATTTCTCCATT
85170358 TTCATTTTTATTTTGGAGAAAACTTCA-ATT-ATTTCCAAATG-TTTCTTATTTCTCCATT
1 TTCATTTTTATTTTGGAGAAAA--TCACATTCATTTCCAAATGATTTC--ATTTCTCCATT
85170416 T
1 T
85170417 CACCATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
56 4 0.08
57 33 0.62
58 13 0.25
59 3 0.06
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.52
Consensus pattern (57 bp):
TTCATTTTTATTTTGGAGAAAATCACATTCATTTCCAAATGATTTCATTTCTCCATT
Found at i:85171017 original size:5 final size:5
Alignment explanation
Indices: 85171007--85171033 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
85170997 TCTGTGTGTT
85171007 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
85171034 CACAAATTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:85179210 original size:19 final size:19
Alignment explanation
Indices: 85179186--85179223 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
85179176 GTTTGCACCC
*
85179186 AACACTCGTCAATATGTTT
1 AACACTCATCAATATGTTT
*
85179205 AACACTCATCAATGTGTTT
1 AACACTCATCAATATGTTT
85179224 GGAACTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (19 bp):
AACACTCATCAATATGTTT
Found at i:85179270 original size:36 final size:37
Alignment explanation
Indices: 85179230--85179314 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 37
85179220 GTTTGGAACT
* *
85179230 AGTGCCTCATCGGTATAACC-GAAGT-ATTTGGCACCC
1 AGTGCCTCATCAGTAT-ACCTGAAGTAATTTGACACCC
*
85179266 AGTGCCTCATCAGTATACCTGAAGTAATTTGACACCT
1 AGTGCCTCATCAGTATACCTGAAGTAATTTGACACCC
85179303 AGTGCCTCATCA
1 AGTGCCTCATCA
85179315 ACACATAGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
35 3 0.07
36 20 0.45
37 21 0.48
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (37 bp):
AGTGCCTCATCAGTATACCTGAAGTAATTTGACACCC
Found at i:85179307 original size:37 final size:36
Alignment explanation
Indices: 85179228--85179314 Score: 122
Period size: 36 Copynumber: 2.4 Consensus size: 36
85179218 GTGTTTGGAA
* *
85179228 CTAGTGCCTCATCGGTATAACCGAAGTATTTGGCAC
1 CTAGTGCCTCATCAGTATAACCGAAGTATTTGACAC
*
85179264 CCAGTGCCTCATCAGTAT-ACCTGAAGTAATTTGACAC
1 CTAGTGCCTCATCAGTATAACC-GAAGT-ATTTGACAC
85179301 CTAGTGCCTCATCA
1 CTAGTGCCTCATCA
85179315 ACACATAGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
35 3 0.07
36 21 0.47
37 21 0.47
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (36 bp):
CTAGTGCCTCATCAGTATAACCGAAGTATTTGACAC
Found at i:85180999 original size:38 final size:38
Alignment explanation
Indices: 85180930--85181083 Score: 202
Period size: 38 Copynumber: 4.1 Consensus size: 38
85180920 AACTTTTAAT
* *
85180930 ACACCAGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
1 ACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATA
* * *
85180968 ACATCGGCACTATGCCTACTAGGCACAAAGCCTGAA-A
1 ACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATA
* * *
85181005 ACACCAGCATTAAGTCTGCTAGGCACAAAGCCTGAATA
1 ACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATA
* * *
85181043 ACACCGACACTAAGCCTGTTAGGTACAAAGCCTGAATA
1 ACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATA
85181081 ACA
1 ACA
85181084 ATTTAATTCA
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
37 31 0.32
38 67 0.68
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.16
Consensus pattern (38 bp):
ACACCGGCACTAAGCCTGCTAGGCACAAAGCCTGAATA
Done.