Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 269 of 318
Found at i:85978686 original size:19 final size:19
Alignment explanation
Indices: 85978638--85978700 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
85978628 TCAATATTAA
85978638 TTTTATAAT-TTTTTATA-
1 TTTTATAATATTTTTATAT
* * *
85978655 GTTTATTAGATTTTTATAT
1 TTTTATAATATTTTTATAT
*
85978674 TTTTATAATATTTATA-AT
1 TTTTATAATATTTTTATAT
85978692 GTTTTATAA
1 -TTTTATAA
85978701 GTTTATATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
17 6 0.17
18 10 0.28
19 20 0.56
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTATAATATTTTTATAT
Found at i:85980160 original size:3 final size:3
Alignment explanation
Indices: 85980152--85980190 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
85980142 CAGTGTCCCA
85980152 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85980191 GTTGTGACTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:85985904 original size:17 final size:19
Alignment explanation
Indices: 85985868--85985911 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
85985858 ATATAATTTT
*
85985868 TAAAAATATATATAATACA
1 TAAAAATATATATAAGACA
85985887 TAAAAATAT-TA-AAGACA
1 TAAAAATATATATAAGACA
*
85985904 TTAAAATA
1 TAAAAATA
85985912 AATGTTTCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 12 0.52
18 2 0.09
19 9 0.39
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (19 bp):
TAAAAATATATATAAGACA
Found at i:85986656 original size:16 final size:15
Alignment explanation
Indices: 85986637--85986676 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
85986627 AAACTATTAG
85986637 AAAAATCATAAAAATA
1 AAAAATCA-AAAAATA
*
85986653 AAAAATTGAAAAAATA
1 AAAAA-TCAAAAAATA
85986669 AAAAATCA
1 AAAAATCA
85986677 GTTCAATCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 2 0.10
16 17 0.81
17 2 0.10
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAAATCAAAAAATA
Found at i:85987256 original size:18 final size:16
Alignment explanation
Indices: 85987179--85987256 Score: 50
Period size: 17 Copynumber: 4.6 Consensus size: 16
85987169 ATTTTTTTTC
*
85987179 ATAATTTTTAATTAAT
1 ATAATTTTTAAATAAT
* *
85987195 AACAAGTTATTTAAA-ATT
1 -ATAA-TT-TTTAAATAAT
*
85987213 AAAATTTATTAAATAAT
1 ATAATTT-TTAAATAAT
*
85987230 ATAAATTTTAAATATAT
1 ATAATTTTTAAATA-AT
85987247 GATAATTTTT
1 -ATAATTTTT
85987257 TATTTATATG
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
15 1 0.02
16 14 0.30
17 15 0.32
18 12 0.26
19 5 0.11
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAATTTTTAAATAAT
Found at i:85990395 original size:177 final size:177
Alignment explanation
Indices: 85990096--85990470 Score: 597
Period size: 177 Copynumber: 2.1 Consensus size: 177
85990086 CTACTGCTTA
* *
85990096 GGAGATAAGATCTGCAATTTTTAGCCTGTTACCCTACAGCTTAGGGGGTTAAGGCTCGTATCTTC
1 GGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACAGCTTAAGGGGTTAAGGCTCGTATCTTC
* * *
85990161 AACCTGCTCTCTTGCTACCTCAGAAAGATAAAGCCGGTGGCTAAAATCTGCTCCATAGTCAATAC
66 AACCTGCTCTCTTGCCACCTCAGAAAGATAAAGCCGGTGGCTAAAACCTGCTCCATAGCCAATAC
* * * *
85990226 ATAGAGATAGGACTCGCCATTTTTGATCTGCTTCATAGCCGATACAT
131 ATAGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
*
85990273 GGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTCGTATCTTC
1 GGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACAGCTTAAGGGGTTAAGGCTCGTATCTTC
* * * * * *
85990338 AACCTGCTCTCTTGCCATCTTAGAGAGATAAGGCCGGTGGCTAAAACCTGTTCCATAGCCGATAC
66 AACCTGCTCTCTTGCCACCTCAGAAAGATAAAGCCGGTGGCTAAAACCTGCTCCATAGCCAATAC
*
85990403 ATGGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
131 ATAGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
85990450 GGAGATAAGATCTGTAATTTT
1 GGAGATAAGATCTGTAATTTT
85990471 CAGTCTGCTT
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
177 181 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (177 bp):
GGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACAGCTTAAGGGGTTAAGGCTCGTATCTTC
AACCTGCTCTCTTGCCACCTCAGAAAGATAAAGCCGGTGGCTAAAACCTGCTCCATAGCCAATAC
ATAGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
Found at i:85990441 original size:45 final size:45
Alignment explanation
Indices: 85990389--85990592 Score: 163
Period size: 45 Copynumber: 4.6 Consensus size: 45
85990379 TAAAACCTGT
85990389 TCCATAGCCGATACATGGAGATAAGACTCGCAATTTCTGATCTGC
1 TCCATAGCCGATACATGGAGATAAGACTCGCAATTTCTGATCTGC
* *
85990434 TCCATAGCCGATACATGGAGATAAGA-TCTGTAATTT-TCAGTCTGC
1 TCCATAGCCGATACATGGAGATAAGACTC-GCAATTTCTGA-TCTGC
* * * * * * * ** *
85990479 TTCC-T-G-CAACTTCAAGAACATAATACTTG---TGGCTAAAATCTGC
1 -TCCATAGCCGA-TACATGGAGATAAGACTCGCAATTTCT--GATCTGC
*
85990522 TCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGC
1 TCCATAGCCGATACATGGAGATAAGACTCGCAATTTCTGATCTGC
* *
85990567 TCTATAGCCGATGCATGGAGATAAGA
1 TCCATAGCCGATACATGGAGATAAGA
85990593 TCTGTAATTT
Statistics
Matches: 121, Mismatches: 24, Indels: 28
0.70 0.14 0.16
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 8 0.07
44 31 0.26
45 71 0.59
46 3 0.02
47 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (45 bp):
TCCATAGCCGATACATGGAGATAAGACTCGCAATTTCTGATCTGC
Found at i:85990546 original size:177 final size:176
Alignment explanation
Indices: 85990096--85990523 Score: 392
Period size: 177 Copynumber: 2.4 Consensus size: 176
85990086 CTACTGCTTA
* * * * **** * * **
85990096 GGAGATAAGATCTGCAATTTTTAGCCTGTTACCCTACAGCTTAGGGGGTTAAGGCTCGTATCTTC
1 GGAGATAAGATCTGTAATTTTCAGCCTGTTA-CCTACAACTTAAGAACATAAGACTCGTAGCTAA
* * * * * * *
85990161 AACCTGCTCTCTTGCTA-CCTCAGAAAGATAAAGCCGGTGGCTAAAATCTGCTCCATAGTCAATA
65 AACCTGCTCTCTAGCCATCAT-AGAGAGATAAGGCCGGTGGCTAAAACCTGCTCCATAGCCAATA
* * * *
85990225 CATAGAGATAGGACTCGCCATTTTTGATCTGCTTCATAGCCGATACAT
129 CATAGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
* ** **** * * **
85990273 GGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTCGTATCTTC
1 GGAGATAAGATCTGTAATTTTCAGCCTGTTA-CCTACAACTTAAGAACATAAGACTCGTAGCTAA
* * * *
85990338 AACCTGCTCTCTTGCCATCTTAGAGAGATAAGGCCGGTGGCTAAAACCTGTTCCATAGCCGATAC
65 AACCTGCTCTCTAGCCATCATAGAGAGATAAGGCCGGTGGCTAAAACCTGCTCCATAGCCAATAC
*
85990403 ATGGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
130 ATAGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
* * * * *
85990450 GGAGATAAGATCTGTAATTTTCAGTCTGCTT-CCTGCAACTTCAAGAACATAATACTTGTGGCTA
1 GGAGATAAGATCTGTAATTTTCAGCCTG-TTACCTACAACTT-AAGAACATAAGACTCGTAGCTA
*
85990514 AAATCTGCTC
64 AAACCTGCTC
85990524 CATAGCCGAT
Statistics
Matches: 215, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
176 7 0.03
177 204 0.95
178 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (176 bp):
GGAGATAAGATCTGTAATTTTCAGCCTGTTACCTACAACTTAAGAACATAAGACTCGTAGCTAAA
ACCTGCTCTCTAGCCATCATAGAGAGATAAGGCCGGTGGCTAAAACCTGCTCCATAGCCAATACA
TAGAGATAAGACTCGCAATTTCTGATCTGCTCCATAGCCGATACAT
Found at i:85990811 original size:133 final size:133
Alignment explanation
Indices: 85990374--85990770 Score: 641
Period size: 133 Copynumber: 3.0 Consensus size: 133
85990364 GATAAGGCCG
* * *
85990374 GTGGCTAAAACCTGTTCCATAGCCGATACATGGAGATAAGACTCGCAATTTCTGATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCAT
* * *
85990439 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAACATAATA
66 AGCCGATGCATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
85990504 CTT
131 CTT
*
85990507 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCTAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCAT
*
85990572 AGCCGATGCATGGAGATAAGATCTGTAATTTACAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
66 AGCCGATGCATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
85990637 CTT
131 CTT
* * * * * *
85990640 GTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAATACTTGCCATTTTTTATTTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCAT
* * *
85990705 AGCTGATGCATGGAGATAAGATCTGTAATTTTTAGTCTGCTTCCTGCAACTTCAGGAAGATAAGA
66 AGCCGATGCATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
85990770 C
131 C
85990771 CTGTATCTTC
Statistics
Matches: 245, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 245 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (133 bp):
GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCAT
AGCCGATGCATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
CTT
Found at i:86000918 original size:16 final size:17
Alignment explanation
Indices: 86000891--86000924 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
86000881 AAATGGATTT
86000891 AATAGAAATTAAATAGA
1 AATAGAAATTAAATAGA
86000908 AATAG-AATTAAATAGA
1 AATAGAAATTAAATAGA
86000924 A
1 A
86000925 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAAATTAAATAGA
Found at i:86003408 original size:2 final size:2
Alignment explanation
Indices: 86003401--86003434 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
86003391 ACAAAATTCG
* *
86003401 CA CA CA CA CA CA CA TA CA CA CA TA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
86003435 TAATATGACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.44, G:0.00, T:0.06
Consensus pattern (2 bp):
CA
Found at i:86004562 original size:23 final size:22
Alignment explanation
Indices: 86004522--86004566 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
86004512 AACCAGAATG
*
86004522 AAGAAAAATAAAAAGAATTGAAA
1 AAGAAAAAGAAAAAGAA-TGAAA
**
86004545 AAGAAAAAGAAAGGGAATGAAA
1 AAGAAAAAGAAAAAGAATGAAA
86004567 GAATGATAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (22 bp):
AAGAAAAAGAAAAAGAATGAAA
Found at i:86005091 original size:57 final size:58
Alignment explanation
Indices: 86005030--86005147 Score: 184
Period size: 57 Copynumber: 2.1 Consensus size: 58
86005020 CATTTCCAGA
* *
86005030 TCATTTTTATTTTGAAGAAAACCACATTAATTTCCAAATG-TTTCCATTTCTCCATTT
1 TCATTTTCATTTTGAAAAAAACCACATTAATTTCCAAATGTTTTCCATTTCTCCATTT
* * *
86005087 TCATTTTCATTTTGAAAAAAACCACATTCATTTCTAAATGTTTTCCATTTCTCCTTTT
1 TCATTTTCATTTTGAAAAAAACCACATTAATTTCCAAATGTTTTCCATTTCTCCATTT
86005145 TCA
1 TCA
86005148 CAATTTCTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 36 0.65
58 19 0.35
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (58 bp):
TCATTTTCATTTTGAAAAAAACCACATTAATTTCCAAATGTTTTCCATTTCTCCATTT
Found at i:86005560 original size:12 final size:12
Alignment explanation
Indices: 86005543--86005567 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86005533 CAAGTCATTC
86005543 ATTACAGAAACA
1 ATTACAGAAACA
86005555 ATTACAGAAACA
1 ATTACAGAAACA
86005567 A
1 A
86005568 ACGAGTCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
ATTACAGAAACA
Found at i:86008087 original size:14 final size:13
Alignment explanation
Indices: 86008070--86008100 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
86008060 AAAAAAAATT
86008070 ATATAAAAATAGTA
1 ATATAAAAA-AGTA
86008084 ATATAAAAAAGTA
1 ATATAAAAAAGTA
86008097 ATAT
1 ATAT
86008101 GGTCGGGCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (13 bp):
ATATAAAAAAGTA
Found at i:86018558 original size:26 final size:27
Alignment explanation
Indices: 86018529--86018582 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
86018519 TTTAGTGATG
86018529 ATGGGTTA-TTCCAAGTGTTTAAGCAA
1 ATGGGTTAGTTCCAAGTGTTTAAGCAA
** *
86018555 ATGGGTTAGTTGGAAGTTTTTAAGCAA
1 ATGGGTTAGTTCCAAGTGTTTAAGCAA
86018582 A
1 A
86018583 CGTTTCTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (27 bp):
ATGGGTTAGTTCCAAGTGTTTAAGCAA
Found at i:86020850 original size:15 final size:15
Alignment explanation
Indices: 86020830--86020859 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86020820 AATGTTCATG
86020830 AATAATAAAAAAACA
1 AATAATAAAAAAACA
*
86020845 AATAATAAATAAACA
1 AATAATAAAAAAACA
86020860 TATATAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
AATAATAAAAAAACA
Found at i:86024034 original size:46 final size:46
Alignment explanation
Indices: 86023967--86024263 Score: 380
Period size: 46 Copynumber: 6.6 Consensus size: 46
86023957 AACTTGTGTG
86023967 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
*
86024013 TAAGATCATGGTTGAAAGATACCATGGCAACCTG---TG---TG--
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* *
86024051 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* *
86024097 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* * * *
86024143 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* *
86024189 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATG-A
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGTA
* * *
86024234 GTAAGACCATAGTTGAAAGACACTATGGCA
1 -TAAGACCATGGTTGAAAGATACCATGGCA
86024264 TCACGTCAAA
Statistics
Matches: 228, Mismatches: 13, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
38 33 0.14
40 2 0.01
41 2 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 185 0.81
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
Found at i:86024049 original size:84 final size:84
Alignment explanation
Indices: 86023914--86024219 Score: 459
Period size: 84 Copynumber: 3.5 Consensus size: 84
86023904 AGTGTGCTCT
* *
86023914 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
86023979 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
86023998 CTGATATGAAATGTATAAGATCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
86024063 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
* *
86024082 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
86024147 ACCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * *
86024174 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
86024220 ATGACAGAAA
Statistics
Matches: 202, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
84 125 0.62
89 1 0.00
91 1 0.00
92 75 0.37
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (84 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:86024569 original size:23 final size:25
Alignment explanation
Indices: 86024524--86024570 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
86024514 AATAAATATA
*
86024524 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
86024549 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
86024571 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:86026241 original size:22 final size:22
Alignment explanation
Indices: 86026213--86026256 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86026203 TTTGTGTATC
86026213 CATTTGAGTCCAAATCAAGTTA
1 CATTTGAGTCCAAATCAAGTTA
*
86026235 CATTTGAGTCCAAATTAAGTTA
1 CATTTGAGTCCAAATCAAGTTA
86026257 ACAGGGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (22 bp):
CATTTGAGTCCAAATCAAGTTA
Found at i:86027169 original size:12 final size:12
Alignment explanation
Indices: 86027152--86027177 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86027142 TAATAGCTGA
86027152 ATATATATATAC
1 ATATATATATAC
86027164 ATATATATATAC
1 ATATATATATAC
86027176 AT
1 AT
86027178 GAGAGTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATATAC
Found at i:86033628 original size:34 final size:34
Alignment explanation
Indices: 86033535--86033617 Score: 139
Period size: 34 Copynumber: 2.4 Consensus size: 34
86033525 TAAAAATATT
* *
86033535 TATCTAATTTATTTTAAACAGAATATCATCCATA
1 TATCTAATTTATTTTACACAAAATATCATCCATA
86033569 TATCTAATTTATTTTACACAAAATATCATCCATA
1 TATCTAATTTATTTTACACAAAATATCATCCATA
86033603 TAATCTAATTTATTT
1 T-ATCTAATTTATTT
86033618 AAGTTAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 33 0.72
35 13 0.28
ACGTcount: A:0.40, C:0.14, G:0.01, T:0.45
Consensus pattern (34 bp):
TATCTAATTTATTTTACACAAAATATCATCCATA
Found at i:86036921 original size:20 final size:18
Alignment explanation
Indices: 86036892--86036931 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
86036882 ACATTAATTT
86036892 ATTTTAATATTAAATTAAAA
1 ATTTTAATA-T-AATTAAAA
*
86036912 ATTTTTATATAATTAAAA
1 ATTTTAATATAATTAAAA
86036930 AT
1 AT
86036932 GTCACTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 1 0.05
20 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTTAATATAATTAAAA
Found at i:86037336 original size:18 final size:19
Alignment explanation
Indices: 86037291--86037337 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
86037281 AGTTTTTTTT
*
86037291 TATATTTTAAAATTTTAAAA
1 TATA-TTTATAATTTTAAAA
86037311 TATATTTATAATTTTAAAA
1 TATATTTATAATTTTAAAA
86037330 T-TATTTAT
1 TATATTTAT
86037338 TAAAGAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 7 0.27
19 15 0.58
20 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATTTATAATTTTAAAA
Found at i:86037424 original size:18 final size:18
Alignment explanation
Indices: 86037401--86037438 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
86037391 AAATTAATAT
86037401 TTTAAT-TTATTTAGAAAA
1 TTTAATATTATTT-GAAAA
86037419 TTTAATATTATTTGAAAA
1 TTTAATATTATTTGAAAA
86037437 TT
1 TT
86037439 CCATAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTAATATTATTTGAAAA
Found at i:86043350 original size:26 final size:26
Alignment explanation
Indices: 86043321--86043373 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
86043311 TTGTAAAAGA
*
86043321 TAGAGATAAATAAAGTGAATCAAATC
1 TAGAGATAAATAAAGTCAATCAAATC
86043347 TAGAGATAAATAAAGTCAATCAAATC
1 TAGAGATAAATAAAGTCAATCAAATC
86043373 T
1 T
86043374 GAATATGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.53, C:0.09, G:0.13, T:0.25
Consensus pattern (26 bp):
TAGAGATAAATAAAGTCAATCAAATC
Found at i:86045473 original size:38 final size:38
Alignment explanation
Indices: 86045431--86045513 Score: 112
Period size: 38 Copynumber: 2.2 Consensus size: 38
86045421 TTTATGACGC
* * *
86045431 TGTTATTCGGGCTTTGTGCCTAACAGGTTTTGTGCCAG
1 TGTTATTCGGGCTTTATGCCTAACAAGCTTTGTGCCAG
* * *
86045469 TGTTATTCTGGCTTTATGCCTAGCAAGCTTTGTGCCGG
1 TGTTATTCGGGCTTTATGCCTAACAAGCTTTGTGCCAG
86045507 TGTTATT
1 TGTTATT
86045514 AAGTCTTTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.13, C:0.18, G:0.27, T:0.42
Consensus pattern (38 bp):
TGTTATTCGGGCTTTATGCCTAACAAGCTTTGTGCCAG
Found at i:86045536 original size:21 final size:22
Alignment explanation
Indices: 86045496--86045536 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
86045486 GCCTAGCAAG
*
86045496 CTTTGTGCCGGTGTTATTAAGT
1 CTTTGTGCCAGTGTTATTAAGT
86045518 CTTTGTGCCAGTG-TATTAA
1 CTTTGTGCCAGTGTTATTAA
86045537 AAGTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.44
Consensus pattern (22 bp):
CTTTGTGCCAGTGTTATTAAGT
Found at i:86046863 original size:14 final size:13
Alignment explanation
Indices: 86046844--86046900 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 13
86046834 TAATTAGATA
86046844 AATATTATTTTATT
1 AATA-TATTTTATT
*
86046858 AATAT-TTTTAAT
1 AATATATTTTATT
*
86046870 AAGATATTTTATT
1 AATATATTTTATT
86046883 -AT-TATTTTATT
1 AATATATTTTATT
*
86046894 AGTATAT
1 AATATAT
86046901 AAAGAAAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
11 9 0.26
12 12 0.34
13 10 0.29
14 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (13 bp):
AATATATTTTATT
Found at i:86047866 original size:26 final size:29
Alignment explanation
Indices: 86047806--86047867 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 29
86047796 AAATTCTAAA
*
86047806 AATTTTATGGTAAGAATATATATGAGTCT
1 AATTTTATGGTAAGAATATATAAGAGTCT
*
86047835 AGTTTTAT-GTAA-AAT-TATAAGA-TCTT
1 AATTTTATGGTAAGAATATATAAGAGTC-T
86047861 AATTTTA
1 AATTTTA
86047868 AGTTCTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.07
26 13 0.45
27 3 0.10
28 4 0.14
29 7 0.24
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (29 bp):
AATTTTATGGTAAGAATATATAAGAGTCT
Found at i:86052886 original size:12 final size:12
Alignment explanation
Indices: 86052869--86052902 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
86052859 CGTTCATGTG
86052869 CTACCACACGGC
1 CTACCACACGGC
*
86052881 CTACCACACGGG
1 CTACCACACGGC
*
86052893 CGACCACACG
1 CTACCACACG
86052903 CCCGTGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:86083816 original size:18 final size:17
Alignment explanation
Indices: 86083788--86083822 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
86083778 ATTATTAAGA
*
86083788 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
86083805 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
86083823 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:86083874 original size:120 final size:120
Alignment explanation
Indices: 86083738--86083959 Score: 435
Period size: 120 Copynumber: 1.9 Consensus size: 120
86083728 TTGGTCCAAT
*
86083738 TCATATATTATGATTTGAGTCAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTAT
1 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTAT
86083803 ATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAAAGTA
66 ATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAAAGTA
86083858 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTAT
1 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTAT
86083923 ATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 ATATTTTAATTAAAATATATTTAATAATAATTATGTT
86083960 TAAATATGAT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 101 1.00
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (120 bp):
TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTAT
ATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAAAGTA
Found at i:86083936 original size:18 final size:17
Alignment explanation
Indices: 86083908--86083942 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
86083898 ATTATTAAGA
*
86083908 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
86083925 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
86083943 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:86084172 original size:44 final size:45
Alignment explanation
Indices: 86084107--86084197 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
86084097 ACCTCTATTC
* * *
86084107 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
86084151 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
86084196 CA
1 CA
86084198 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:86084199 original size:16 final size:16
Alignment explanation
Indices: 86084178--86084246 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
86084168 GATTAGCTAT
86084178 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
86084194 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
86084211 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
86084227 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
86084243 TACA
1 TACA
86084247 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:86084220 original size:33 final size:32
Alignment explanation
Indices: 86084178--86084246 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
86084168 GATTAGCTAT
86084178 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
86084211 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
86084243 TACA
1 TACA
86084247 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:86084953 original size:2 final size:2
Alignment explanation
Indices: 86084946--86084972 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86084936 AATTGTGGTT
86084946 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
86084973 GAAACTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86090014 original size:24 final size:24
Alignment explanation
Indices: 86089987--86090037 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
86089977 TTTTTATTTC
86089987 AATATAATTAATTTTGAAATGTGT
1 AATATAATTAATTTTGAAATGTGT
86090011 AATATAATTAATTTTGAAATGTGT
1 AATATAATTAATTTTGAAATGTGT
86090035 AAT
1 AAT
86090038 GAATAAGATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (24 bp):
AATATAATTAATTTTGAAATGTGT
Found at i:86091090 original size:31 final size:31
Alignment explanation
Indices: 86091044--86091120 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
86091034 ATAACATCGA
*
86091044 TTTC-AATAGTCCAATAACTTAAATAAAAAC
1 TTTCGAATAGTTCAATAACTTAAATAAAAAC
* ** *
86091074 TTTTGAATAGTTCAATAGTTTAAATGAAAAC
1 TTTCGAATAGTTCAATAACTTAAATAAAAAC
*
86091105 TTTCGAGTAGTTCAAT
1 TTTCGAATAGTTCAAT
86091121 GATCAAATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 3 0.08
31 36 0.92
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (31 bp):
TTTCGAATAGTTCAATAACTTAAATAAAAAC
Found at i:86091680 original size:25 final size:24
Alignment explanation
Indices: 86091646--86091694 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
86091636 AATTTAAAAT
86091646 TTATATTAATATTAAATAAATATAA
1 TTATATTAATATTAAATAAA-ATAA
*
86091671 TTATATTAATATTACATAAAATAA
1 TTATATTAATATTAAATAAAATAA
86091695 AAATCCCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
TTATATTAATATTAAATAAAATAA
Found at i:86091991 original size:6 final size:6
Alignment explanation
Indices: 86091980--86092004 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
86091970 GGGGAAGGGA
86091980 GAGAGG GAGAGG GAGAGG GAGAGG G
1 GAGAGG GAGAGG GAGAGG GAGAGG G
86092005 GTTTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:86092047 original size:25 final size:24
Alignment explanation
Indices: 86092014--86092067 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
86092004 GGTTTTTATT
86092014 TTATTTTATTTAATATTAAGATAA
1 TTATTTTATTTAATATTAAGATAA
*
86092038 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATATTAAGATAA
*
86092063 ATATT
1 TTATT
86092068 AATATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TTATTTTATTTAATATTAAGATAA
Found at i:86092081 original size:12 final size:12
Alignment explanation
Indices: 86092050--86092075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86092040 ATATTTATTT
86092050 AATATTAATATA
1 AATATTAATATA
86092062 AATATTAATATA
1 AATATTAATATA
86092074 AA
1 AA
86092076 ATTTAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AATATTAATATA
Found at i:86099448 original size:105 final size:106
Alignment explanation
Indices: 86099302--86099551 Score: 265
Period size: 107 Copynumber: 2.4 Consensus size: 106
86099292 AGAATGAAAA
* ** * * *
86099302 AATTGAATTGATAAACCATTGTTGTCGGGTAAT-CGGAGGTGGTAAGCCATCGTTG-TGGGGTAA
1 AATTGAATCGATAAACCATCATTGTCGGGCAATCCAG-GGTGGTAAGCCATCGTTGCT-GGGCAA
* *
86099365 CCTGGGG-GTG-GTTCATCATTGCTAGGAAACCCAACATGATAG
64 CCTGGGGTG-GAGGTCATCATTACTAGGAAACCCAACATGATAG
* * *
86099407 AATTAAATCGATAAACCATCATTGTCGGGCAATCCAGGGTGGTAAGCCATTGTTGCTGGGCAATC
1 AATTGAATCGATAAACCATCATTGTCGGGCAATCCAGGGTGGTAAGCCATCGTTGCTGGGCAACC
* * * * ***
86099472 TGGGGTGGCAGGTCATCGTTACTGGGCAGCCCGGGATGATAG
66 TGGGGTGG-AGGTCATCATTACTAGGAAACCCAACATGATAG
*
86099514 AATTGAATCGATAAACCATCATTGTCGAGCAATCCAGG
1 AATTGAATCGATAAACCATCATTGTCGGGCAATCCAGG
86099552 ATGGCATGTC
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
105 57 0.47
106 4 0.03
107 59 0.49
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (106 bp):
AATTGAATCGATAAACCATCATTGTCGGGCAATCCAGGGTGGTAAGCCATCGTTGCTGGGCAACC
TGGGGTGGAGGTCATCATTACTAGGAAACCCAACATGATAG
Found at i:86115596 original size:15 final size:15
Alignment explanation
Indices: 86115572--86115611 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
86115562 TGTAAATTGA
*
86115572 ATTTCCTTATCATGG
1 ATTTCTTTATCATGG
*
86115587 ATTTCTTTATCTTGG
1 ATTTCTTTATCATGG
86115602 ATTTCTTTAT
1 ATTTCTTTAT
86115612 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.57
Consensus pattern (15 bp):
ATTTCTTTATCATGG
Found at i:86121739 original size:15 final size:16
Alignment explanation
Indices: 86121721--86121754 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
86121711 AAATTAAATT
*
86121721 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
86121736 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
86121752 AAT
1 AAT
86121755 GATATCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:86124329 original size:15 final size:15
Alignment explanation
Indices: 86124309--86124338 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86124299 GTGAAGTGAT
86124309 AACATGGTGATTGAA
1 AACATGGTGATTGAA
86124324 AACATGGTGATTGAA
1 AACATGGTGATTGAA
86124339 GCATGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.27
Consensus pattern (15 bp):
AACATGGTGATTGAA
Found at i:86125697 original size:88 final size:88
Alignment explanation
Indices: 86125594--86125765 Score: 344
Period size: 88 Copynumber: 2.0 Consensus size: 88
86125584 CTTATGCCTA
86125594 GAAGAGATGAAAGAAAGATGAAAGGAATGTGAGTTGAAGGATGGGTGAATAATAAGTGAGGGGTG
1 GAAGAGATGAAAGAAAGATGAAAGGAATGTGAGTTGAAGGATGGGTGAATAATAAGTGAGGGGTG
86125659 GTATTTATAGTAGAGGGATCCTG
66 GTATTTATAGTAGAGGGATCCTG
86125682 GAAGAGATGAAAGAAAGATGAAAGGAATGTGAGTTGAAGGATGGGTGAATAATAAGTGAGGGGTG
1 GAAGAGATGAAAGAAAGATGAAAGGAATGTGAGTTGAAGGATGGGTGAATAATAAGTGAGGGGTG
86125747 GTATTTATAGTAGAGGGAT
66 GTATTTATAGTAGAGGGAT
86125766 GGCATATGAG
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.38, C:0.01, G:0.38, T:0.23
Consensus pattern (88 bp):
GAAGAGATGAAAGAAAGATGAAAGGAATGTGAGTTGAAGGATGGGTGAATAATAAGTGAGGGGTG
GTATTTATAGTAGAGGGATCCTG
Found at i:86127839 original size:16 final size:15
Alignment explanation
Indices: 86127808--86127848 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
86127798 TTATTTATTA
86127808 AATTAATTTT-AATT
1 AATTAATTTTCAATT
86127822 AATTAATTTTCCAATT
1 AATTAATTTT-CAATT
*
86127838 AAATAATTTTC
1 AATTAATTTTC
86127849 TCAACTCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 10 0.42
15 1 0.04
16 13 0.54
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (15 bp):
AATTAATTTTCAATT
Found at i:86139832 original size:23 final size:23
Alignment explanation
Indices: 86139806--86139850 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
86139796 TGGGTATGTG
*
86139806 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
86139829 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
86139851 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:86140543 original size:27 final size:26
Alignment explanation
Indices: 86140513--86140587 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
86140503 CGTTTCTTTG
*
86140513 GACTATCTCGTGTTTAATATCCTATCA
1 GACTATC-CGTGTTTAACATCCTATCA
* * *
86140540 GACTATCCCATGTTTAGCATCCTGTCA
1 GACTAT-CCGTGTTTAACATCCTATCA
*
86140567 AACTATCCTGTGTTTAACATC
1 GACTATCC-GTGTTTAACATC
86140588 ACATTGAACT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.05
27 36 0.92
28 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
GACTATCCGTGTTTAACATCCTATCA
Found at i:86143425 original size:46 final size:46
Alignment explanation
Indices: 86143306--86143573 Score: 201
Period size: 46 Copynumber: 5.7 Consensus size: 46
86143296 GACTAGAGCA
** * *
86143306 AGTGTAAGA-CATGTCTAAGACAT-GTATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGATGT--GTC
* *
86143352 AATGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTGTC
* * *
86143396 AGTGTAAGACCATGTCTAGGACATGGCATCGAC-ACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACG---AGATGTGTC
* *
86143444 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATGTGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGATGT----GTC
* * * * ** *
86143494 TGTGTAAGACCATGTCTGGGACATGGCATTGACT-TGATGAATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGA-G-ATGTGTC
86143541 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
86143574 ATTATACCCT
Statistics
Matches: 180, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
44 9 0.05
45 18 0.10
46 45 0.25
47 31 0.17
48 40 0.22
49 3 0.02
50 32 0.18
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTGTC
Found at i:86143457 original size:48 final size:47
Alignment explanation
Indices: 86143354--86143571 Score: 205
Period size: 48 Copynumber: 4.6 Consensus size: 47
86143344 TGTAAGCCAA
* * *
86143354 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG--AGATGTGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-ACGATAGAGGTGTCAG
*
86143398 TGTAAGACCATGTCTAGGACATGGCATCGACACGTATAGAGGTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACACG-ATAGAGGTGTCAG
* * * **
86143446 TGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACAC-GATA-GAG-GTGTCAG
* ** * *
86143496 TGTAAGACCATGTCTGGGACATGGCATTGACTTGAT-GA-ATAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACACGATAGAGGT--GTCAG
86143543 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
86143572 GCATTATACC
Statistics
Matches: 143, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
44 7 0.05
45 16 0.11
46 7 0.05
47 31 0.22
48 43 0.30
49 6 0.04
50 33 0.23
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACACGATAGAGGTGTCAG
Found at i:86148137 original size:26 final size:27
Alignment explanation
Indices: 86148108--86148167 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
86148098 CCACATATAT
*
86148108 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
86148134 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
86148161 ATATCTG
1 ATATCTG
86148168 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:86152384 original size:23 final size:23
Alignment explanation
Indices: 86152358--86152410 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
86152348 TCATTTCATA
86152358 ATGGATGATTTCATGAATTAAGT
1 ATGGATGATTTCATGAATTAAGT
86152381 ATGGATGATTTCATGAATTAAGT
1 ATGGATGATTTCATGAATTAAGT
86152404 ATGGATG
1 ATGGATG
86152411 TATGCTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (23 bp):
ATGGATGATTTCATGAATTAAGT
Found at i:86156892 original size:20 final size:20
Alignment explanation
Indices: 86156862--86156906 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
86156852 CTGTTTTATT
86156862 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
86156881 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
86156901 ATGGGC
1 ATGGGC
86156907 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:86156972 original size:27 final size:27
Alignment explanation
Indices: 86156942--86157037 Score: 68
Period size: 28 Copynumber: 3.3 Consensus size: 27
86156932 ATAGGGGTAC
86156942 GGCCCAGACTGATACTGATATGGGCTA
1 GGCCCAGACTGATACTGATATGGGCTA
* *
86156969 GGCCCATTATGCTCTGATATTG-TAATAGGGCTA
1 GGCCC---A-G-ACTGATACTGAT-AT-GGGCTA
* *
86157002 TGGCCCAGATTAATACTGATATGGGCTAA
1 -GGCCCAGACTGATACTGATATGGGCT-A
86157031 GGCCCAG
1 GGCCCAG
86157038 TTAACACTGA
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
27 5 0.09
28 12 0.23
29 9 0.17
30 3 0.06
31 3 0.06
32 10 0.19
33 6 0.11
34 5 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (27 bp):
GGCCCAGACTGATACTGATATGGGCTA
Found at i:86157036 original size:28 final size:27
Alignment explanation
Indices: 86156996--86157048 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
86156986 TATTGTAATA
* *
86156996 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAG-TTAACACTGATAT
86157024 GGGCTAAGGCCCAGTTAACACTGAT
1 GGGCTAAGGCCCAGTTAACACTGAT
86157049 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (27 bp):
GGGCTAAGGCCCAGTTAACACTGATAT
Found at i:86157069 original size:62 final size:61
Alignment explanation
Indices: 86156927--86157071 Score: 170
Period size: 61 Copynumber: 2.4 Consensus size: 61
86156917 ATATCTCGAC
* * * * *
86156927 TTGTAATAGGGGTACGGCCCAGACTGATACTGATATGGGCTAGGCCCATTATGCTCTGATA
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCATTATACACTGATA
*
86156988 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGTTA-ACACTGAT-
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCT-AGGCCCA-TTATACACTGATA
*
86157049 TTCTGAATAGGGCT-TAGGCCCAG
1 TTGT-AATAGGGCTAT-GGCCCAG
86157072 TAAAGTTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
61 41 0.56
62 29 0.40
63 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCATTATACACTGATA
Found at i:86157274 original size:9 final size:10
Alignment explanation
Indices: 86157253--86157285 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
86157243 ATTAGCTTCC
86157253 TTTT-ATTAT
1 TTTTGATTAT
86157262 TTTTGATTAT
1 TTTTGATTAT
86157272 TTTTGATTAT
1 TTTTGATTAT
86157282 TTTT
1 TTTT
86157286 ATTCTGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (10 bp):
TTTTGATTAT
Found at i:86158784 original size:18 final size:18
Alignment explanation
Indices: 86158739--86158786 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
86158729 GATGACTTTA
86158739 ATAACGATC-CTCGAGTGC
1 ATAACGATCTC-CGAGTGC
86158757 ATAACGATCTCCGAGTGC
1 ATAACGATCTCCGAGTGC
*
86158775 GTAACGATCTCC
1 ATAACGATCTCC
86158787 AAAATCTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (18 bp):
ATAACGATCTCCGAGTGC
Found at i:86165174 original size:46 final size:48
Alignment explanation
Indices: 86165002--86165273 Score: 197
Period size: 46 Copynumber: 5.8 Consensus size: 48
86164992 TTATTTGTCT
* * * *
86165002 GCTAGTGTAAGA-CACGTCTGGGACATACATCGGCCAC-ATTATG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * * *
86165048 TCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
** * *
86165096 GCTAGTGTAAGA-CATGTCTAAGATATGTATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
*
86165142 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT---
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGA
* * * *** * *
86165186 GTTAGTGTAAGACCATATCTAGGACATTGCATCGATATGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACA-TGCATCGGCCTCGAGATGT-AGA
* *
86165236 GGTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCT
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCT
86165274 TGGTTTCGAT
Statistics
Matches: 175, Mismatches: 38, Indels: 22
0.74 0.16 0.09
Matches are distributed among these distances:
44 10 0.06
45 13 0.07
46 73 0.42
47 26 0.15
48 22 0.13
49 2 0.01
50 29 0.17
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:86167561 original size:35 final size:35
Alignment explanation
Indices: 86167521--86167679 Score: 192
Period size: 35 Copynumber: 4.5 Consensus size: 35
86167511 GTCTGTACAT
86167521 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
86167556 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
86167591 ATGTGATGTTATATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * *
86167626 ATATGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
86167661 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
86167680 CTTGAGTATT
Statistics
Matches: 102, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 102 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:86180989 original size:17 final size:19
Alignment explanation
Indices: 86180955--86180989 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
86180945 AAATATTTTT
86180955 TTTATAATCTATTAAATAC
1 TTTATAATCTATTAAATAC
86180974 TTTAT-ATCTA-TAAATA
1 TTTATAATCTATTAAATA
86180990 TTAATTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTATAATCTATTAAATAC
Found at i:86181188 original size:17 final size:17
Alignment explanation
Indices: 86181166--86181209 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
86181156 TTCATTATAT
86181166 TTACATTTTATTACATA
1 TTACATTTTATTACATA
*
86181183 TTACATTTTATTATATA
1 TTACATTTTATTACATA
*
86181200 -TATATTTTAT
1 TTACATTTTAT
86181210 GTTACTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (17 bp):
TTACATTTTATTACATA
Found at i:86181229 original size:21 final size:19
Alignment explanation
Indices: 86181191--86181242 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
86181181 TATTACATTT
86181191 TATTATATATATAT--TTTA
1 TATTAT-TATATATGGTTTA
*
86181209 TGTTACTTATTATATGGTTTA
1 TATTA-TTA-TATATGGTTTA
86181230 TATTATTATATAT
1 TATTATTATATAT
86181243 TTTGGTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 6 0.21
19 11 0.39
20 3 0.11
21 8 0.29
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.60
Consensus pattern (19 bp):
TATTATTATATATGGTTTA
Found at i:86184951 original size:28 final size:30
Alignment explanation
Indices: 86184920--86184983 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
86184910 ATTATAAAAA
86184920 ATAAAAATCAATAAAAGTTAA-AAAAAT-T
1 ATAAAAATCAATAAAAGTTAATAAAAATAT
* * **
86184948 ATAAAAATTATTAAATTTTAATAAAAATAT
1 ATAAAAATCAATAAAAGTTAATAAAAATAT
86184978 ATAAAA
1 ATAAAA
86184984 TTACAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 17 0.57
29 6 0.20
30 7 0.23
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (30 bp):
ATAAAAATCAATAAAAGTTAATAAAAATAT
Found at i:86184962 original size:10 final size:9
Alignment explanation
Indices: 86184909--86184993 Score: 59
Period size: 9 Copynumber: 9.3 Consensus size: 9
86184899 GTTGCAAAAG
86184909 AATTATAAA
1 AATTATAAA
86184918 AA--ATAAA
1 AATTATAAA
*
86184925 AATCAATAAA
1 AAT-TATAAA
* *
86184935 AGTTAAAAA
1 AATTATAAA
86184944 AATTATAAA
1 AATTATAAA
86184953 AATTATTAAA
1 AATTA-TAAA
**
86184963 TTTTAATAAA
1 AATT-ATAAA
86184973 AA-TATATAA
1 AATTATA-AA
*
86184982 AATTACAAA
1 AATTATAAA
86184991 AAT
1 AAT
86184994 CGTAAAAAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
7 7 0.12
8 3 0.05
9 28 0.47
10 20 0.34
11 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (9 bp):
AATTATAAA
Found at i:86185089 original size:31 final size:31
Alignment explanation
Indices: 86185034--86185102 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
86185024 TATAAAAATC
*
86185034 AAAAATTTTATAAAATATATAG-AAATATAGA
1 AAAAAATTTATAAAATATATAGAAAAT-TAGA
* *
86185065 AAAAAATTTATAAAATCGTA-AGAAAATTATA
1 AAAAAATTTATAAAAT-ATATAGAAAATTAGA
86185096 AAAAAAT
1 AAAAAAT
86185103 AAAGAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 27 0.82
32 6 0.18
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (31 bp):
AAAAAATTTATAAAATATATAGAAAATTAGA
Found at i:86185351 original size:8 final size:9
Alignment explanation
Indices: 86185339--86185389 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
86185329 TTTTACAATT
86185339 TTTTTTATA
1 TTTTTTATA
*
86185348 TTTTTTACAA
1 TTTTTTA-TA
86185358 TTTTTTATA
1 TTTTTTATA
86185367 TTTTTCTA-A
1 TTTTT-TATA
* *
86185376 GTTTTAATA
1 TTTTTTATA
86185385 TTTTT
1 TTTTT
86185390 ATGTTTTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
8 1 0.03
9 23 0.68
10 10 0.29
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTTTATA
Found at i:86185364 original size:19 final size:20
Alignment explanation
Indices: 86185329--86185371 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
86185319 ATTTATAAAA
86185329 TTTTACAATTTTTTTTATATT
1 TTTTACAA-TTTTTTTATATT
86185350 TTTTACAA-TTTTTTATATT
1 TTTTACAATTTTTTTATATT
86185369 TTT
1 TTT
86185372 CTAAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 14 0.64
21 8 0.36
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTACAATTTTTTTATATT
Found at i:86185389 original size:19 final size:19
Alignment explanation
Indices: 86185340--86185389 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
86185330 TTTACAATTT
*
86185340 TTTTTATATTTTTTACAAT
1 TTTTTATATTTTTTACAAG
86185359 TTTTTATA-TTTTT-CTAAG
1 TTTTTATATTTTTTAC-AAG
*
86185377 TTTTAATATTTTT
1 TTTTTATATTTTT
86185390 ATGTTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 14 0.52
19 12 0.44
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTATATTTTTTACAAG
Found at i:86189542 original size:110 final size:110
Alignment explanation
Indices: 86189349--86189571 Score: 437
Period size: 110 Copynumber: 2.0 Consensus size: 110
86189339 CATTTCAAAT
*
86189349 AACAACTTATAAACATGTATAACCAAGTACTCTATTTGGTCAAAATAAACAACTAACTTCCAATT
1 AACAACTAATAAACATGTATAACCAAGTACTCTATTTGGTCAAAATAAACAACTAACTTCCAATT
86189414 TGATTTGGATCTATACATACCATAAATCTTTTTTACCAAAACACA
66 TGATTTGGATCTATACATACCATAAATCTTTTTTACCAAAACACA
86189459 AACAACTAATAAACATGTATAACCAAGTACTCTATTTGGTCAAAATAAACAACTAACTTCCAATT
1 AACAACTAATAAACATGTATAACCAAGTACTCTATTTGGTCAAAATAAACAACTAACTTCCAATT
86189524 TGATTTGGATCTATACATACCATAAATCTTTTTTACCAAAACACA
66 TGATTTGGATCTATACATACCATAAATCTTTTTTACCAAAACACA
86189569 AAC
1 AAC
86189572 CATTTGGTAC
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 112 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (110 bp):
AACAACTAATAAACATGTATAACCAAGTACTCTATTTGGTCAAAATAAACAACTAACTTCCAATT
TGATTTGGATCTATACATACCATAAATCTTTTTTACCAAAACACA
Found at i:86192565 original size:18 final size:18
Alignment explanation
Indices: 86192542--86192579 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
86192532 TAGGGTTCAT
*
86192542 AATGAAAAGGAAGTTGAG
1 AATGAAAAGGAAGCTGAG
*
86192560 AATGAAGAGGAAGCTGAG
1 AATGAAAAGGAAGCTGAG
86192578 AA
1 AA
86192580 CAAATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.34, T:0.13
Consensus pattern (18 bp):
AATGAAAAGGAAGCTGAG
Found at i:86195070 original size:6 final size:6
Alignment explanation
Indices: 86195059--86195171 Score: 52
Period size: 6 Copynumber: 18.8 Consensus size: 6
86195049 GGATTTCAGC
* *
86195059 TCATCA TCATCA TCATTA TCAT-A TTCATCA TC-TCTA TCTTCA TCATCA
1 TCATCA TCATCA TCATCA TCATCA -TCATCA TCATC-A TCATCA TCATCA
* * * * * * * * * *
86195107 CCATC- GCTATCA CCATCG CCATCG CCATCG CCATCA TTATCA TCATCA
1 TCATCA TC-ATCA TCATCA TCATCA TCATCA TCATCA TCATCA TCATCA
* *
86195155 TCATCT TCATCT TCATC
1 TCATCA TCATCA TCATC
86195172 TACATCTCCA
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
5 4 0.04
6 82 0.91
7 4 0.04
ACGTcount: A:0.26, C:0.35, G:0.04, T:0.35
Consensus pattern (6 bp):
TCATCA
Found at i:86195118 original size:12 final size:12
Alignment explanation
Indices: 86195102--86195142 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
86195092 CTATCTTCAT
86195102 CATCACCATCGC
1 CATCACCATCGC
*
86195114 TATCACCATCGC
1 CATCACCATCGC
*
86195126 CATCGCCATCGC
1 CATCACCATCGC
86195138 CATCA
1 CATCA
86195143 TTATCATCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.24, C:0.46, G:0.10, T:0.20
Consensus pattern (12 bp):
CATCACCATCGC
Found at i:86195172 original size:6 final size:6
Alignment explanation
Indices: 86195149--86195227 Score: 56
Period size: 6 Copynumber: 13.2 Consensus size: 6
86195139 ATCATTATCA
* * *
86195149 TCATCA TCATCT TCATCT TCATCT ACATCT CCATC- TCTAT-T TCCATCT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC-ATCT T-CATCT
* * *
86195197 TCATCT CCAACAT T-ATCT TCATTT TCATCT T
1 TCATCT TCATC-T TCATCT TCATCT TCATCT T
86195228 GTTCTTCAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 50 0.88
7 4 0.07
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.46
Consensus pattern (6 bp):
TCATCT
Found at i:86207827 original size:26 final size:26
Alignment explanation
Indices: 86207797--86207880 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86207787 CGTGAAATTC
* *
86207797 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
86207823 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86207849 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86207875 TTATCA
1 TTATCA
86207881 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:86213649 original size:26 final size:26
Alignment explanation
Indices: 86213611--86213694 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
86213601 CATGAAATTC
* *
86213611 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
86213637 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86213663 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86213689 TTATCA
1 TTATCA
86213695 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:86214241 original size:18 final size:18
Alignment explanation
Indices: 86214218--86214252 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86214208 GAGTTAAACA
86214218 AATCGAGTTATCCGAGTT
1 AATCGAGTTATCCGAGTT
*
86214236 AATCGAGTTATTCGAGT
1 AATCGAGTTATCCGAGT
86214253 CAACTCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (18 bp):
AATCGAGTTATCCGAGTT
Found at i:86214590 original size:30 final size:30
Alignment explanation
Indices: 86214541--86214599 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86214531 AACTTTTTAT
*
86214541 TTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTCCCCCAAAACTTTTACTCCCTTCCCAC
86214570 TTTCCCCCTAAAACTTTTACTCCCTTCCCA
1 TTTCCCCC-AAAACTTTTACTCCCTTCCCA
86214600 TTCCACCTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 14 0.52
31 5 0.19
ACGTcount: A:0.20, C:0.44, G:0.00, T:0.36
Consensus pattern (30 bp):
TTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:86215745 original size:47 final size:49
Alignment explanation
Indices: 86215686--86215785 Score: 111
Period size: 50 Copynumber: 2.1 Consensus size: 49
86215676 AATTCATTTG
*
86215686 ATTTCATCAC-TTTCATAA-ACATAAGTATACTTCCTTT-AA-AGCTTACC
1 ATTTCATCACTTTTCATAATACATAA-TATACTTCATTTGAACA-CTTACC
*
86215733 ATTTCAAT-ACTTTTCATAATTACATAATATATTTCATTTGAACACTTACC
1 ATTTC-ATCACTTTTCATAA-TACATAATATACTTCATTTGAACACTTACC
86215783 ATT
1 ATT
86215786 CCTTTCCTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
47 7 0.16
48 10 0.22
49 10 0.22
50 17 0.38
51 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (49 bp):
ATTTCATCACTTTTCATAATACATAATATACTTCATTTGAACACTTACC
Found at i:86219308 original size:23 final size:22
Alignment explanation
Indices: 86219226--86219307 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 22
86219216 TAACACTCTA
86219226 CAGAATGTAA-TGCACTGAAATGC
1 CAGAATG-AATTGCACT-AAATGC
* *
86219249 CAGAATGAATTGCACTATAGTGT
1 CAGAATGAATTGCACTA-AATGC
86219272 C--AATGAATTGCACCTAAATGC
1 CAGAATGAATTGCA-CTAAATGC
86219293 CAGAATGAATTGCAC
1 CAGAATGAATTGCAC
86219308 CAAAGTATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
21 15 0.30
22 7 0.14
23 28 0.56
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (22 bp):
CAGAATGAATTGCACTAAATGC
Found at i:86222193 original size:43 final size:42
Alignment explanation
Indices: 86222119--86222241 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
86222109 TAAAAAACAT
* * *
86222119 ATACAATGCCAACGTCCCAGAC-GCGGTCTTACATGTAATCAA
1 ATACGATGCCAAAGTCCCAGACAG-GGTCTTACATGAAATCAA
* ** * *
86222161 ATATCGATTCCACTGTCCCAGACAGGGTCTTACACGAAATCAG
1 ATA-CGATGCCAAAGTCCCAGACAGGGTCTTACATGAAATCAA
*
86222204 ATACGATGCCAAAGTCCCAGACATGGTCTTACATGAAA
1 ATACGATGCCAAAGTCCCAGACAGGGTCTTACATGAAA
86222242 AATAGAAATC
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 33 0.49
43 33 0.49
44 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ATACGATGCCAAAGTCCCAGACAGGGTCTTACATGAAATCAA
Found at i:86222232 original size:42 final size:43
Alignment explanation
Indices: 86222124--86222295 Score: 154
Period size: 44 Copynumber: 4.0 Consensus size: 43
86222114 AACATATACA
** * * *
86222124 ATGCCAACGTCCCAGACGCGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAGATATCG
* *
86222167 ATTCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAGATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAGATATCG
* * *
86222209 ATGCCAAAGTCCCAGACATGGTCTTACATGAAAAAT-AGAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG--AAATCAGATATCG
* * *
86222253 ATGCCAACTTCTCAGATATGGTCTTACACGCAGAA-CAGATATC
1 ATGCCAACGTCCCAGACATGGTCTTACACG-A-AATCAGATATC
86222296 AGAATTCCTA
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
42 28 0.27
43 37 0.36
44 39 0.38
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAGATATCG
Found at i:86228238 original size:31 final size:31
Alignment explanation
Indices: 86228200--86228263 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
86228190 AGAGGCCATG
86228200 TTGGATAAAAAGTCGCTAATGATAGAACTAC
1 TTGGATAAAAAGTCGCTAATGATAGAACTAC
* *
86228231 TTGGATAAAATGTTGCTAATGATAGAACTAC
1 TTGGATAAAAAGTCGCTAATGATAGAACTAC
86228262 TT
1 TT
86228264 CGACAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (31 bp):
TTGGATAAAAAGTCGCTAATGATAGAACTAC
Found at i:86228941 original size:18 final size:20
Alignment explanation
Indices: 86228915--86228955 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
86228905 TTTAAATTCG
*
86228915 TTTTGATTT-TAAATT-TTA
1 TTTTCATTTGTAAATTATTA
*
86228933 TTTTCATTTGTAATTTATTA
1 TTTTCATTTGTAAATTATTA
86228953 TTT
1 TTT
86228956 CTTTTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.42
19 5 0.26
20 6 0.32
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTCATTTGTAAATTATTA
Found at i:86230592 original size:21 final size:21
Alignment explanation
Indices: 86230566--86230628 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
86230556 ACATAGAAAG
*
86230566 CCAGTGTCGCAACACT-AGGTT
1 CCAGTGTTGCAACACTGA-GTT
86230587 CCAGTGTTGCAACACTGAGTT
1 CCAGTGTTGCAACACTGAGTT
*
86230608 CCAGTGTTGCAACACCGAGTT
1 CCAGTGTTGCAACACTGAGTT
86230629 GGTGTCGTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
21 38 0.97
22 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (21 bp):
CCAGTGTTGCAACACTGAGTT
Found at i:86231959 original size:163 final size:163
Alignment explanation
Indices: 86231671--86231965 Score: 409
Period size: 163 Copynumber: 1.8 Consensus size: 163
86231661 TCTATAAAAC
* * * *
86231671 ACCTTGGTATAAACCAGATTTTTATGAAAACTTATATAAAGAATAGGTGAATTATGACGAGATCA
1 ACCTTGGTATAAACCAGATTTTTATGAAAAATTACATAAAGAAGAGGTGAATTATGAAGAGATCA
** * *
86231736 TCAATTTTTTAACTGAAGGTTGAGGAAATTAGGTTCGAAAAGTCATAACTGAAAAACCAATAAGA
66 TCAATTTTTTAACTGAAGGTCAAGGAAATTAGGTTCGAAAAGCCACAACTGAAAAACCAATAAGA
86231801 TTCTATGATTACGATCGAAGCCGTCCATAAGAA
131 TTCTATGATTACGATCGAAGCCGTCCATAAGAA
*
86231834 ACCTTGGTAT-AACCTGGATTTTTATGAAAAATTACATGAAA-AAGAGGTGAATTATGAAGAGAT
1 ACCTTGGTATAAACC-AGATTTTTATGAAAAATTACAT-AAAGAAGAGGTGAATTATGAAGAGAT
* * * *
86231897 CATCAATTTTTTAATTGAGGGTCAAGGAACTTGGGTTC-AAAAGACCACAACT-AAAGAACCAAT
64 CATCAATTTTTTAACTGAAGGTCAAGGAAATTAGGTTCGAAAAG-CCACAACTGAAA-AACCAAT
86231960 AAGATT
127 AAGATT
86231966 TAAACAATCT
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
162 12 0.10
163 100 0.87
164 3 0.03
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (163 bp):
ACCTTGGTATAAACCAGATTTTTATGAAAAATTACATAAAGAAGAGGTGAATTATGAAGAGATCA
TCAATTTTTTAACTGAAGGTCAAGGAAATTAGGTTCGAAAAGCCACAACTGAAAAACCAATAAGA
TTCTATGATTACGATCGAAGCCGTCCATAAGAA
Found at i:86233281 original size:6 final size:6
Alignment explanation
Indices: 86233262--86233324 Score: 81
Period size: 6 Copynumber: 10.3 Consensus size: 6
86233252 TCTCAATGAA
* * *
86233262 TTCATT TCTCATT TTCATT TTTATT TTCATT TTCGTT TTCGTT TTCATT
1 TTCATT T-TCATT TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT
*
86233311 TACATT TTCATT TT
1 TTCATT TTCATT TT
86233325 GAGAAAACCA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
6 44 0.88
7 6 0.12
ACGTcount: A:0.14, C:0.16, G:0.03, T:0.67
Consensus pattern (6 bp):
TTCATT
Found at i:86235725 original size:48 final size:48
Alignment explanation
Indices: 86235612--86236181 Score: 584
Period size: 48 Copynumber: 11.8 Consensus size: 48
86235602 GTAAGATGCT
* * * *
86235612 GATGCCATGTCCCAGACATGGTCTTACACTTACTCTCATATATCG-GTGCC
1 GATGCCATGTTCCAAACATGGTCTTACAC-TA-GCTCACATATCGAG-GCC
* *
86235662 GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * * ** * *
86235710 GATTCCATGTCCCAAACATGATCTTACACAAGCTCTCCCATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * *
86235758 GATGCCATGTTCCAAACATGGTCTTATATTGGCTCACATATCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * * **
86235806 GATGCAATGTCCCAAGCATGGTCTTACACTAGCTCTCATATCAATACC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* *
86235854 GATGCCATGTTCCAAACATGGTTTTACACTGGCTCACATATCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
** * * * * **
86235902 GATTTCATGTCCCAAACATGGCCTTACACTAGCTCTCATATCAATACC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * *
86235950 GATGCCATGTTCTAAACATGGTCTTACATTGGCTCACATATCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * *
86235998 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* *
86236046 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * ** *
86236094 GATGCCATGTTCCAGACATGGTCTTACACTAGTTCTCATATCAATACT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * *
86236142 GATGTCATGTTCCAAACATGGTATTATACTGGTTCACATA
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
86236182 ACCCTAGTAT
Statistics
Matches: 418, Mismatches: 101, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
48 388 0.93
49 3 0.01
50 27 0.06
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
Found at i:86235782 original size:96 final size:96
Alignment explanation
Indices: 86235612--86236181 Score: 791
Period size: 96 Copynumber: 5.9 Consensus size: 96
86235602 GTAAGATGCT
* ** *
86235612 GATGCCATGTCCCAGACATGGTCTTACACTTA-CTCTCATATATCGGTGCCGATGCCATGTTCCA
1 GATGCCATGTCCCAAACATGGTCTTACAC-TAGCTCTC--ATATCAATACCGATGCCATGTTCCA
* * *
86235676 AACATGGTCTTACACTAGCCCACATGTCGAGGCC
63 AACATGGTCTTACACTGGCTCACATATCGAGGCC
* * * ** *
86235710 GATTCCATGTCCCAAACATGATCTTACACAAGCTCTCCCATCAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
* * *
86235775 ATGGTCTTATATTGGCTCACATATCGAGGCT
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* *
86235806 GATGCAATGTCCCAAGCATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
*
86235871 ATGGTTTTACACTGGCTCACATATCGAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
** * *
86235902 GATTTCATGTCCCAAACATGGCCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCTAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
*
86235967 ATGGTCTTACATTGGCTCACATATCGAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* *
86235998 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
*
86236063 ATGGTCTTACACTGGCTCACATATCGAGGTC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* * * * *
86236094 GATGCCATGTTCCAGACATGGTCTTACACTAGTTCTCATATCAATACTGATGTCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
* * *
86236159 ATGGTATTATACTGGTTCACATA
66 ATGGTCTTACACTGGCTCACATA
86236182 ACCCTAGTAT
Statistics
Matches: 419, Mismatches: 52, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
96 387 0.92
97 1 0.00
98 31 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCACATATCGAGGCC
Found at i:86242156 original size:18 final size:18
Alignment explanation
Indices: 86242133--86242177 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
86242123 CTACAATTCC
*
86242133 CTCCATGGTCGTCAATAA
1 CTCCATAGTCGTCAATAA
86242151 CTCCATAGTCGTCAATAA
1 CTCCATAGTCGTCAATAA
86242169 CTCCATAGT
1 CTCCATAGT
86242178 AGGTTTCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (18 bp):
CTCCATAGTCGTCAATAA
Found at i:86245535 original size:56 final size:56
Alignment explanation
Indices: 86245448--86245560 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
86245438 AGGGAAAAAG
86245448 AATGTAAATTTCAAATATTGTATTCACAGTTCATATGACCATATCAGAGACAGGAC
1 AATGTAAATTTCAAATATTGTATTCACAGTTCATATGACCATATCAGAGACAGGAC
* *
86245504 AATGTAAATTTCAAATATTGTATTCATAGTTCATATGACCATATCAGAGACTGGAC
1 AATGTAAATTTCAAATATTGTATTCACAGTTCATATGACCATATCAGAGACAGGAC
86245560 A
1 A
86245561 GACACAAATA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (56 bp):
AATGTAAATTTCAAATATTGTATTCACAGTTCATATGACCATATCAGAGACAGGAC
Found at i:86248945 original size:14 final size:15
Alignment explanation
Indices: 86248910--86248939 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86248900 AATAATTTTA
86248910 AAAAATATTTAAAAT
1 AAAAATATTTAAAAT
86248925 AAAAATATTTAAAAT
1 AAAAATATTTAAAAT
86248940 TCAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAAATATTTAAAAT
Found at i:86248967 original size:19 final size:19
Alignment explanation
Indices: 86248923--86248968 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
86248913 AATATTTAAA
*
86248923 ATAAAAATATTTAAAATTC
1 ATAAAAATATTAAAAATTC
86248942 A-ATAAAATA-TAAAAAGTTC
1 ATA-AAAATATTAAAAA-TTC
86248961 ATAAAAAT
1 ATAAAAAT
86248969 TCAAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 6 0.26
19 16 0.70
20 1 0.04
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (19 bp):
ATAAAAATATTAAAAATTC
Found at i:86256204 original size:5 final size:5
Alignment explanation
Indices: 86256196--86256227 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
86256186 AATATAGTGG
86256196 TAAAA TAAAA TAAAA TAAAA TAAAA GTAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA -TAAAA T
86256228 CCATATGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:86258912 original size:79 final size:79
Alignment explanation
Indices: 86258813--86258968 Score: 294
Period size: 79 Copynumber: 2.0 Consensus size: 79
86258803 TAGAGTTGCT
* *
86258813 TCTTCACCACAGTTACCACCATAATATTTTATTTCCAAGAACAGACCTAAAAGAGAAATTAAAAC
1 TCTTCACCACAGCTACCACCATAATATTTTATTGCCAAGAACAGACCTAAAAGAGAAATTAAAAC
86258878 TCCAAAAAGGTATG
66 TCCAAAAAGGTATG
86258892 TCTTCACCACAGCTACCACCATAATATTTTATTGCCAAGAACAGACCTAAAAGAGAAATTAAAAC
1 TCTTCACCACAGCTACCACCATAATATTTTATTGCCAAGAACAGACCTAAAAGAGAAATTAAAAC
86258957 TCCAAAAAGGTA
66 TCCAAAAAGGTA
86258969 CGTCAAGGCT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.44, C:0.22, G:0.10, T:0.24
Consensus pattern (79 bp):
TCTTCACCACAGCTACCACCATAATATTTTATTGCCAAGAACAGACCTAAAAGAGAAATTAAAAC
TCCAAAAAGGTATG
Found at i:86261791 original size:39 final size:39
Alignment explanation
Indices: 86261747--86261840 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 39
86261737 GGTCTTTAAC
* * * *
86261747 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAACACATAGCCTGCGAACCTCAAGT
* * * *
86261786 TCGGATATATTTCCAACATATAGCCTGCGAACCTTATGT
1 CCGGATATATTTCCAACACATAGCCTGCGAACCTCAAGT
86261825 CCGGATATATTTCCAA
1 CCGGATATATTTCCAA
86261841 TCTCATATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAACACATAGCCTGCGAACCTCAAGT
Found at i:86275616 original size:3 final size:3
Alignment explanation
Indices: 86275608--86275654 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
86275598 GTATTCATCC
*
86275608 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT CCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
86275655 AAGGTTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TCT
Found at i:86276924 original size:12 final size:12
Alignment explanation
Indices: 86276909--86276978 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 12
86276899 ATAAGTAATT
86276909 AATTAATATATA
1 AATTAATATATA
* *
86276921 AATTAAAAAAT-
1 AATTAATATATA
*
86276932 AA-TAAGTATTTA
1 AATTAA-TATATA
*
86276944 TTATTAATATATA
1 -AATTAATATATA
*
86276957 AATTAATATATT
1 AATTAATATATA
86276969 AATTAATATA
1 AATTAATATA
86276979 CCCAAGAAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
10 3 0.07
11 4 0.09
12 29 0.64
13 6 0.13
14 3 0.07
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (12 bp):
AATTAATATATA
Found at i:86277679 original size:11 final size:11
Alignment explanation
Indices: 86277663--86277692 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
86277653 ACTTGTCGCA
86277663 TGAATCATCAC
1 TGAATCATCAC
86277674 TGAATCATCAC
1 TGAATCATCAC
*
86277685 TAAATCAT
1 TGAATCAT
86277693 ATTAAGATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (11 bp):
TGAATCATCAC
Found at i:86281027 original size:24 final size:24
Alignment explanation
Indices: 86281000--86281057 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
86280990 TAGATAGTTG
86281000 ATAGTTGATACATGTCGTAATTAC
1 ATAGTTGATACATGTCGTAATTAC
86281024 ATAGTTGATACATGTCGTAATTAC
1 ATAGTTGATACATGTCGTAATTAC
86281048 ATAGTTGATA
1 ATAGTTGATA
86281058 GTTGATACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (24 bp):
ATAGTTGATACATGTCGTAATTAC
Found at i:86281031 original size:31 final size:31
Alignment explanation
Indices: 86280993--86281080 Score: 127
Period size: 31 Copynumber: 3.1 Consensus size: 31
86280983 TGGCAGGTAG
86280993 ATAGTTGATAGTTGATACATGTCGTAATTAC
1 ATAGTTGATAGTTGATACATGTCGTAATTAC
86281024 -------ATAGTTGATACATGTCGTAATTAC
1 ATAGTTGATAGTTGATACATGTCGTAATTAC
86281048 ATAGTTGATAGTTGATACATGTCGTAATTAC
1 ATAGTTGATAGTTGATACATGTCGTAATTAC
86281079 AT
1 AT
86281081 TCTTCACAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
24 24 0.48
31 26 0.52
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (31 bp):
ATAGTTGATAGTTGATACATGTCGTAATTAC
Found at i:86281306 original size:36 final size:36
Alignment explanation
Indices: 86281257--86281334 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
86281247 TAGCACCGGC
*
86281257 TGTGTTTCAGGATTCTCTTTTGTATCAGGTTTAGGT
1 TGTGTTTCAGGATTCTCTTTTGTATCAAGTTTAGGT
**
86281293 TGTGTTTTGGGATTCTCTTTTGTATCAAGTTTAGGT
1 TGTGTTTCAGGATTCTCTTTTGTATCAAGTTTAGGT
*
86281329 AGTGTT
1 TGTGTT
86281335 GATTCCAGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.14, C:0.09, G:0.26, T:0.51
Consensus pattern (36 bp):
TGTGTTTCAGGATTCTCTTTTGTATCAAGTTTAGGT
Found at i:86282240 original size:17 final size:16
Alignment explanation
Indices: 86282218--86282260 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
86282208 GCTCTTTCTG
86282218 CAAGAGTACAATAATTC
1 CAAGAG-ACAATAATTC
*
86282235 CAAGAG-GAATAATTC
1 CAAGAGACAATAATTC
86282250 CAAGAGGACAA
1 CAAGA-GACAA
86282261 AGGGATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 13 0.59
16 1 0.05
17 8 0.36
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (16 bp):
CAAGAGACAATAATTC
Found at i:86282247 original size:15 final size:15
Alignment explanation
Indices: 86282227--86282257 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86282217 GCAAGAGTAC
86282227 AATAATTCCAAGAGG
1 AATAATTCCAAGAGG
86282242 AATAATTCCAAGAGG
1 AATAATTCCAAGAGG
86282257 A
1 A
86282258 CAAAGGGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (15 bp):
AATAATTCCAAGAGG
Found at i:86289067 original size:17 final size:17
Alignment explanation
Indices: 86289045--86289078 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86289035 AGCCACTGTT
* *
86289045 GTTGATTTCATGTCCTG
1 GTTGATATCAGGTCCTG
86289062 GTTGATATCAGGTCCTG
1 GTTGATATCAGGTCCTG
86289079 CCCTAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.18, G:0.26, T:0.41
Consensus pattern (17 bp):
GTTGATATCAGGTCCTG
Found at i:86290330 original size:27 final size:26
Alignment explanation
Indices: 86290300--86290355 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
86290290 AATCTTAAAA
**
86290300 TTTTTTAATTTATATTCTAATAAGGTT
1 TTTTTTAATAAATATTCTAATAA-GTT
*
86290327 TTTTTTAATAAATATTTTAATAAGTT
1 TTTTTTAATAAATATTCTAATAAGTT
86290353 TTT
1 TTT
86290356 AACCATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (26 bp):
TTTTTTAATAAATATTCTAATAAGTT
Found at i:86295386 original size:15 final size:15
Alignment explanation
Indices: 86295347--86295386 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
86295337 AAATTCAGTT
86295347 CTTAAATTTTTAGCA
1 CTTAAATTTTTAGCA
** *
86295362 CTTATTTTTTTATCA
1 CTTAAATTTTTAGCA
86295377 CTTAAATTTT
1 CTTAAATTTT
86295387 CAGTTTATCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (15 bp):
CTTAAATTTTTAGCA
Found at i:86300582 original size:24 final size:24
Alignment explanation
Indices: 86300549--86300606 Score: 98
Period size: 24 Copynumber: 2.3 Consensus size: 24
86300539 TACATTTAAT
86300549 TTTAGTTTTCAGTTTTCTTTCGTTC
1 TTTA-TTTTCAGTTTTCTTTCGTTC
86300574 TTTATTTTCAGTTTTCTTTCGTTC
1 TTTATTTTCAGTTTTCTTTCGTTC
86300598 TTTCATTTT
1 TTT-ATTTT
86300607 TAATTTTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 23 0.72
25 9 0.28
ACGTcount: A:0.09, C:0.16, G:0.09, T:0.67
Consensus pattern (24 bp):
TTTATTTTCAGTTTTCTTTCGTTC
Found at i:86300618 original size:31 final size:31
Alignment explanation
Indices: 86300534--86300619 Score: 88
Period size: 32 Copynumber: 2.7 Consensus size: 31
86300524 GTCATACATA
*
86300534 TTTCATACATTTAATTTTAGTTTTCAGTTTTC
1 TTTCATTC-TTTAATTTTAGTTTTCAGTTTTC
* *
86300566 TTTCGTTCTTT-ATTTTCAGTTTTC-TTTCGTTC
1 TTTCATTCTTTAATTTT-AGTTTTCAGTT--TTC
86300598 TTTCATT-TTTAATTTTAGTTTT
1 TTTCATTCTTTAATTTTAGTTTT
86300620 TCTTAAGTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
30 7 0.15
31 19 0.41
32 20 0.43
ACGTcount: A:0.15, C:0.13, G:0.07, T:0.65
Consensus pattern (31 bp):
TTTCATTCTTTAATTTTAGTTTTCAGTTTTC
Found at i:86300750 original size:13 final size:14
Alignment explanation
Indices: 86300734--86300763 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86300724 TTTTCCTTTA
86300734 TTATTT-TATTTTG
1 TTATTTATATTTTG
86300747 TTATTTATATTTTG
1 TTATTTATATTTTG
86300761 TTA
1 TTA
86300764 ACTTGATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (14 bp):
TTATTTATATTTTG
Found at i:86302269 original size:42 final size:42
Alignment explanation
Indices: 86302223--86302372 Score: 167
Period size: 42 Copynumber: 3.5 Consensus size: 42
86302213 TGAGATTACG
* *
86302223 TGTAAAACCATATCTAGGATATGACATCGATATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGACTTCA
* **
86302265 TGTAAGACCATATCTGGGATATGGA-ATTGATATGAGACTTTG
1 TGTAAGACCATATCTGGGATAT-GACATCGATATGAGACTTCA
* * * * *
86302307 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTGGGATA-TGACATCGATATGAGACTTCA
* *
86302350 TGTAAGACCATATTTGAGATATG
1 TGTAAGACCATATCTGGGATATG
86302373 GCATTGGTAC
Statistics
Matches: 88, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
42 56 0.64
43 32 0.36
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAGACTTCA
Found at i:86312694 original size:16 final size:16
Alignment explanation
Indices: 86312673--86312706 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
86312663 TGTTAGTTGG
86312673 GATCTTAGACCTGAAA
1 GATCTTAGACCTGAAA
*
86312689 GATCTTAGAGCTGAAA
1 GATCTTAGACCTGAAA
86312705 GA
1 GA
86312707 ATTTTTGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (16 bp):
GATCTTAGACCTGAAA
Found at i:86315513 original size:18 final size:18
Alignment explanation
Indices: 86315490--86315527 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
86315480 ATTTGTCAAA
86315490 AAGTAAAAGCCGAACACC
1 AAGTAAAAGCCGAACACC
86315508 AAGTAAAAGCCGAACACC
1 AAGTAAAAGCCGAACACC
86315526 AA
1 AA
86315528 ATGCCTTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.26, G:0.16, T:0.05
Consensus pattern (18 bp):
AAGTAAAAGCCGAACACC
Found at i:86318162 original size:19 final size:20
Alignment explanation
Indices: 86318133--86318177 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
86318123 ATGTAATCAA
*
86318133 ATATCGATGCCATTGTCCCAG
1 ATAT-GATGCCAATGTCCCAG
86318154 -TATGATGCCAATGTCCCAG
1 ATATGATGCCAATGTCCCAG
86318173 ATATG
1 ATATG
86318178 GTATTTCATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (20 bp):
ATATGATGCCAATGTCCCAG
Found at i:86325148 original size:43 final size:42
Alignment explanation
Indices: 86325082--86325238 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
86325072 AGCTCGTATA
* * *
86325082 ATGCCAATGTCCCAAA-TGTGGTCTTACATGTAATCAAATATAG
1 ATGCCATTGTCCCAAACAG-GGTCTTACATGAAATCAAATAT-G
* *
86325125 ATGCCACTT-TCCCAAACAGGGTCTTATATGAAATCATATATG
1 ATGCCA-TTGTCCCAAACAGGGTCTTACATGAAATCAAATATG
* *
86325167 ATGCCATTGTCCCATACATGGTCTTACACAT-AAATCACAA-ATCG
1 ATGCCATTGTCCCAAACAGGGTCTT--ACATGAAATCA-AATAT-G
* *
86325211 ATGCCAATGT-CCAAGACATGGTCTTACA
1 ATGCCATTGTCCCAA-ACAGGGTCTTACA
86325239 CGATAACACA
Statistics
Matches: 95, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 24 0.25
43 43 0.45
44 26 0.27
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATTGTCCCAAACAGGGTCTTACATGAAATCAAATATG
Done.