Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 27 of 318
Found at i:10171457 original size:21 final size:21
Alignment explanation
Indices: 10171431--10171501 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
10171421 CTACAACTTA
* *
10171431 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
10171452 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
10171473 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
10171494 AAGCAGAG
1 AAGCAGAG
10171502 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:10171744 original size:14 final size:14
Alignment explanation
Indices: 10171725--10171758 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10171715 ATTGCTATTG
10171725 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
10171739 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
10171753 TTTGCT
1 GTTGCT
10171759 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:10171927 original size:43 final size:41
Alignment explanation
Indices: 10171825--10171987 Score: 139
Period size: 41 Copynumber: 3.9 Consensus size: 41
10171815 GTTTTTGTAT
* * * * *
10171825 AAAAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTGTA
1 AAAAACGCCACTAAAGAACATATTCTTTAGCGGCGTTAGAA
*
10171866 AAAAATGCCACTAAAGAACATATTCTTTAGCGGCGATTAGAAA
1 AAAAACGCCACTAAAGAACATATTCTTTAGCGGCG-TTAG-AA
* * ***
10171909 AAAAACGCCGCTACAGAACATGA-TCTTTAGCGGCGTTTTCCA
1 AAAAACGCCACTAAAGAACAT-ATTCTTTAGCGGCG-TTAGAA
** * * *
10171951 TTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTT
1 AAAAACGCCACTAAAGAACATATTCTTTAGCGGCGTT
10171988 TTTTCCAAAG
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
41 33 0.33
42 33 0.33
43 33 0.33
44 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (41 bp):
AAAAACGCCACTAAAGAACATATTCTTTAGCGGCGTTAGAA
Found at i:10171967 original size:126 final size:125
Alignment explanation
Indices: 10171827--10172114 Score: 344
Period size: 126 Copynumber: 2.3 Consensus size: 125
10171817 TTTTGTATAA
* * * *
10171827 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTGTAAAAAATGCCACTAAAGAACATATTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAACGCCACTAAAGAACATAGTCT
*
10171892 TTAGCGGCGATTAGAAAAAAAACGCCGCTACAGAACATGATCTTTAGCGGCGTTTTCCAT-T
66 TTAGCGGC-ATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-CATCT
* ** * * *
10171953 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCAAAGCGCCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAACGCCACTAAAGAACATAGTC
* ***** * * **
10172018 TTTAGTGGCATTTTTTTACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
65 TTTAGCGGCATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCATCT
*
10172079 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT
10172115 TTTTCTAAGC
Statistics
Matches: 138, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
125 4 0.03
126 103 0.75
127 31 0.22
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (125 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTAAAAAACGCCACTAAAGAACATAGTCT
TTAGCGGCATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCATCT
Found at i:10171972 original size:42 final size:42
Alignment explanation
Indices: 10171914--10172200 Score: 425
Period size: 42 Copynumber: 6.8 Consensus size: 42
10171904 AGAAAAAAAA
* **
10171914 CGCCGCTACAGAACATGATCTTTAGCGGCGTTTTCCAT-TAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-TTTCTAAG
* * *
10171956 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCAAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* * * *
10171998 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTAAG
*
10172040 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
10172082 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
10172124 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* *
10172166 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
10172201 GTTTGTAAAC
Statistics
Matches: 224, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
41 1 0.00
42 222 0.99
43 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
Found at i:10173309 original size:19 final size:19
Alignment explanation
Indices: 10173273--10173311 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10173263 TATTATTAAT
**
10173273 ATATTTATAATTGTAATAA
1 ATATTTATAATTAAAATAA
*
10173292 ATATTTATTATTAAAATAA
1 ATATTTATAATTAAAATAA
10173311 A
1 A
10173312 ATTGAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:10173362 original size:16 final size:16
Alignment explanation
Indices: 10173341--10173373 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10173331 AATAAATTAT
*
10173341 ATTTATTATATTAATA
1 ATTTATTATATGAATA
10173357 ATTTATTATATGAATA
1 ATTTATTATATGAATA
10173373 A
1 A
10173374 ATATAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
ATTTATTATATGAATA
Found at i:10174578 original size:33 final size:33
Alignment explanation
Indices: 10174535--10174607 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
10174525 AATGTTCAAA
* *
10174535 TGTCATTATTTTTTTAAAAATATAATATATTTT
1 TGTCACTATTTTCTTAAAAATATAATATATTTT
*
10174568 TGTCACTATTTTCTTAAAAATATAATATGTTTT
1 TGTCACTATTTTCTTAAAAATATAATATATTTT
10174601 TGTCACT
1 TGTCACT
10174608 GCACTTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.53
Consensus pattern (33 bp):
TGTCACTATTTTCTTAAAAATATAATATATTTT
Found at i:10176085 original size:197 final size:197
Alignment explanation
Indices: 10175750--10176138 Score: 778
Period size: 197 Copynumber: 2.0 Consensus size: 197
10175740 AAGTTGGAAT
10175750 TAATTGAGTACTCTTTATCTTTTTTTGAAAAGTTTGGATTCACGTGAATCATGATATATATACAC
1 TAATTGAGTACTCTTTATCTTTTTTTGAAAAGTTTGGATTCACGTGAATCATGATATATATACAC
10175815 TATATATATAAGATTATATAAGACACTGATGTTCATAATTCCTAGGTAAATCTTAGGTTGCAATT
66 TATATATATAAGATTATATAAGACACTGATGTTCATAATTCCTAGGTAAATCTTAGGTTGCAATT
10175880 ACCAATACCTGGTGTGAGCCGCAACTTTGATTAATGAAAAGTAGCGTGGATTTTGTTGCTTGATA
131 ACCAATACCTGGTGTGAGCCGCAACTTTGATTAATGAAAAGTAGCGTGGATTTTGTTGCTTGATA
10175945 TA
196 TA
10175947 TAATTGAGTACTCTTTATCTTTTTTTGAAAAGTTTGGATTCACGTGAATCATGATATATATACAC
1 TAATTGAGTACTCTTTATCTTTTTTTGAAAAGTTTGGATTCACGTGAATCATGATATATATACAC
10176012 TATATATATAAGATTATATAAGACACTGATGTTCATAATTCCTAGGTAAATCTTAGGTTGCAATT
66 TATATATATAAGATTATATAAGACACTGATGTTCATAATTCCTAGGTAAATCTTAGGTTGCAATT
10176077 ACCAATACCTGGTGTGAGCCGCAACTTTGATTAATGAAAAGTAGCGTGGATTTTGTTGCTTG
131 ACCAATACCTGGTGTGAGCCGCAACTTTGATTAATGAAAAGTAGCGTGGATTTTGTTGCTTG
10176139 GTATTATCCC
Statistics
Matches: 192, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
197 192 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (197 bp):
TAATTGAGTACTCTTTATCTTTTTTTGAAAAGTTTGGATTCACGTGAATCATGATATATATACAC
TATATATATAAGATTATATAAGACACTGATGTTCATAATTCCTAGGTAAATCTTAGGTTGCAATT
ACCAATACCTGGTGTGAGCCGCAACTTTGATTAATGAAAAGTAGCGTGGATTTTGTTGCTTGATA
TA
Found at i:10181035 original size:18 final size:19
Alignment explanation
Indices: 10180998--10181046 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 19
10180988 CTTAAAAGTA
10180998 AAATTAAACAGATAACTTTT
1 AAATTAAA-AGATAACTTTT
10181018 GAAATTAAAAG-T-ACTTTT
1 -AAATTAAAAGATAACTTTT
10181036 AAATTTAAAAG
1 AAA-TTAAAAG
10181047 CAAAAGCAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 1 0.04
20 2 0.07
21 8 0.30
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (19 bp):
AAATTAAAAGATAACTTTT
Found at i:10182014 original size:17 final size:19
Alignment explanation
Indices: 10181971--10182014 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 19
10181961 TTGAAATTCC
10181971 TTAT-TAAAATTTAGAAAA
1 TTATATAAAATTTAGAAAA
*
10181989 TTCTA-AAAA-TTA-AAAA
1 TTATATAAAATTTAGAAAA
10182005 TTATATAAAA
1 TTATATAAAA
10182015 ATAGATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 8 0.36
17 7 0.32
18 7 0.32
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
TTATATAAAATTTAGAAAA
Found at i:10187837 original size:17 final size:16
Alignment explanation
Indices: 10187817--10187862 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
10187807 TATATACGTA
10187817 TAATAAATATATAAAAT
1 TAATAAATAT-TAAAAT
*
10187834 TAATAATTATTAAAAT
1 TAATAAATATTAAAAT
10187850 CT-ATAAA-ATTAAA
1 -TAATAAATATTAAA
10187863 CTTTAATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 6 0.23
16 10 0.38
17 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAAATATTAAAAT
Found at i:10187849 original size:16 final size:17
Alignment explanation
Indices: 10187817--10187849 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10187807 TATATACGTA
10187817 TAATAAATATATAAAAT
1 TAATAAATATATAAAAT
*
10187834 TAATAATTAT-TAAAAT
1 TAATAAATATATAAAAT
10187850 CTATAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATAAATATATAAAAT
Found at i:10192844 original size:8 final size:8
Alignment explanation
Indices: 10192804--10192842 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
10192794 ATGGTGTGAC
10192804 ATTTTAAT
1 ATTTTAAT
*
10192812 ATTATAAT
1 ATTTTAAT
*
10192820 ATTTTATT
1 ATTTTAAT
*
10192828 ATTTTAAA
1 ATTTTAAT
10192836 ATTTTAA
1 ATTTTAA
10192843 AAAATATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
ATTTTAAT
Found at i:10193804 original size:29 final size:29
Alignment explanation
Indices: 10193762--10193819 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
10193752 GTTGTATCTT
10193762 AATTCAATTCATTATTTTCATTTTTAATC
1 AATTCAATTCATTATTTTCATTTTTAATC
10193791 AATTCAATTCATTATTTTCATTTTTAATC
1 AATTCAATTCATTATTTTCATTTTTAATC
10193820 TTTTTCTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (29 bp):
AATTCAATTCATTATTTTCATTTTTAATC
Found at i:10194074 original size:75 final size:72
Alignment explanation
Indices: 10193951--10194150 Score: 285
Period size: 72 Copynumber: 2.7 Consensus size: 72
10193941 CTAACGCACA
* *
10193951 AGATTATTTTCACTCTTTTATTTAAGTTGTTGCCCACATGCATATACTTTAATTCTTCAAGTTGA
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACATGCATATAC--T--TTCTTCAAGTTGA
10194016 -TTATCACACG
62 TTTATCACACG
* * *
10194026 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTGTATATACTTTCTTCAAGTTGATTTT
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACATGCATATACTTTCTTCAAGTTGATTTA
10194091 TCACACG
66 TCACACG
* * *
10194098 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCTACCTACATATACTTTCTT
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACATGCATATACTTTCTT
10194151 TCTTTTATTT
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 13 0.11
72 58 0.50
73 1 0.01
75 43 0.37
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.46
Consensus pattern (72 bp):
AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACATGCATATACTTTCTTCAAGTTGATTTA
TCACACG
Found at i:10197348 original size:366 final size:367
Alignment explanation
Indices: 10196624--10198070 Score: 2022
Period size: 366 Copynumber: 3.9 Consensus size: 367
10196614 GATTATTCTA
* * * * *
10196624 TGTATTTATGCAAGTTTCGTTTTGGATTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATATCTTGTTCGTACAGAATACACAAATTCC
* * * *
10196689 AACTGTAACAACCTGCATTATTGCTGGAACT-AAAAAAAGATATACAAATTTTAGGAAGAAAAAA
66 AACTATAACAACCTGCATTATTGCTAGAACTAAAAAAAAGATATATAAATTTAAGGAAGAAAAAA
* * * *
10196753 TGATTATCGACAAATGGCACCACCTCTTACCAAATAGGTTACAATTATAGTGTAAAGCCAACTAG
131 TGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAAAGCCAACTAG
* * *
10196818 AACCACGTAAGCTTTTTTTTTTCCAACGTAAGTATATCTCACGTGCTTCGTGTGCAGAGACTATG
196 AATCACATAAGC-TTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATG
* * * *
10196883 AGAATAAATAAAGGACTTCTTACTAGATTCACCAAACTCCATTGGGTGGTGCATCAGTGACTAAT
260 AGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGAT
*
10196948 GACATTTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
325 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * * * *
10196991 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATATTTTGTTCATACATAATACAAAAATGCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATATCTTGTTCGTACAGAATACACAAATTCC
* * * * **
10197056 AACTATAATAACCTGCATTATTGTTGGAACT-AAAAAGAGATATATAAATTTAATAAAGAAAAAA
66 AACTATAACAACCTGCATTATTGCTAGAACTAAAAAAAAGATATATAAATTTAAGGAAGAAAAAA
* * * *
10197120 TGATTATCGACATATGGCACCACCTCTTACCAATGAGGTTTCAATAATTGCGTAATGCCCAACTA
131 TGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAAAG-CCAACTA
* * * *
10197185 GAATCACATAAG-GTTTTTTTTCCAACATAAGAATATCTCACGTGCTTCGTGTGCAAAGATTATG
195 GAATCACATAAGCTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATG
* * * ** *
10197249 AGAACAGATAAAGGACATATTACTAGATTCACCAAACTCCATTGGGTGTTGAATTGGTGACTGAC
260 AGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGAT
* * *
10197314 GGCATCTATAAAAAGTTCGTAATTAATAAAATCCGCAAAAGGT
325 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * * *
10197357 TGTATTTATTCATGTTTTACTTTGGACTTTTATTATATCTTGTTTGTACAGAATATACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATATCTTGTTCGTACAGAATACACAAATTCC
* * *
10197422 AACTATAACAACCTACATTATTGCTAAAACTAAAAAAAAGATATATAAATTCAAGGAAGAAAAAA
66 AACTATAACAACCTGCATTATTGCTAGAACTAAAAAAAAGATATATAAATTTAAGGAAGAAAAAA
* * *
10197487 TGATTATCGACAAATGGTACCACATTTTACCAAAGAGGTTTCAATAATAGCGTAAAGCCAACTAG
131 TGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAAAGCCAACTAG
* * * * *
10197552 AATCACGTAAGCATTTTTTTT-AAACGTAAAAATATCTCACGTGCTTCGTGTGCAGAGGCTATGA
196 AATCACATAAGCTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGA
* * * *
10197616 GAACAAATAAATGACATCTTACTAAATTTACCAAACTCCATTAGGTGTTGCATCAGTGACTGATG
261 GAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGATG
10197681 ACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
326 ACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* *
10197723 TGTATTTATGCATGTTTTGCTTTGGACTTTTTATTATCTCTTGTTCGTATAGAATACACAAATTC
1 TGTATTTATGCATGTTTTGCTTTGGAC-TTTTATTATATCTTGTTCGTACAGAATACACAAATTC
* * * *
10197788 CAACTGTAACAACGTGCATTGTTGCTAGAACTAAAAAAATATATATATAAATTTAAGGAAGAAAA
65 CAACTATAACAACCTGCATTATTGCTAGAACTAAAAAAA-AGATATATAAATTTAAGGAAGAAAA
* * * * * *
10197853 AATGATTATCGATAAATGGCGCCACAC-CTTCCCAAAGAGGTTCCAATCATAGCGTAATGCCCAA
129 AATGATTATCGACAAATGGCACCAC-CTCTTACCAAAGAGGTTTCAATAATAGCGTAAAG-CCAA
*
10197917 CTAGAATCACATAAGCTTTTTTTTTTCCAATGTAAGAATATCTCACGTGCTTCGTGTGCAGAGAC
192 CTAGAATCACATAAGC-TTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGAC
* * *
10197982 TATGAGAACAAATAAATGATATCTTACTAGATTCACCAATCTCCATTGGGTGTTGCATCAGTGAC
256 TATGAGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGAC
* *
10198047 TGATAACATCTACAAAAAGATCGT
321 TGATGACATCTACAAAAAGTTCGT
10198071 CATTGATAAT
Statistics
Matches: 943, Mismatches: 128, Indels: 14
0.87 0.12 0.01
Matches are distributed among these distances:
366 397 0.42
367 314 0.33
368 89 0.09
369 19 0.02
370 8 0.01
371 116 0.12
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (367 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATATCTTGTTCGTACAGAATACACAAATTCC
AACTATAACAACCTGCATTATTGCTAGAACTAAAAAAAAGATATATAAATTTAAGGAAGAAAAAA
TGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAAAGCCAACTAG
AATCACATAAGCTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGA
GAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGATG
ACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
Found at i:10202586 original size:364 final size:366
Alignment explanation
Indices: 10200604--10204261 Score: 5080
Period size: 368 Copynumber: 10.0 Consensus size: 366
10200594 GATTATTCTA
*** * * * **
10200604 TGTATTTATGCATGTTTCATTTTGGATTTTTATTATCTCTTGATCGTACAGAATACACCAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
* * *
10200669 AACTGTAACAACCTGCATTATTGCTGGAACTAAAAAAAGATATATAAATTTTAGAAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * * * * * *
10200734 GATTATCGATAAATGGCACCACCTCTTACTAAAGAGGTTACGAGAATAGCCTAA-AGCCAACTAG
131 GATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
* * *
10200798 AATCACGTAAGCTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCATGTGCAAAGATTATGA
196 AATCACGTAAGC-TTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGA
* * *
10200863 GAACAAATAAAAGATATCTTACTAGATTCGCCAAACTCCATTGGGTGGTGCATCAATGACTGATG
260 GAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATG
* * **
10200928 ACATTTACAAAAAGTTCATAATTAATGAAATCCGCAAAATAT
325 ACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* *
10200970 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCATACATAATACAAAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
* * *
10201035 AACTGCAACAACCTGCATTATTATTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * * *
10201100 GATTATCGATATATGGCACCACCTCTTACCAAAGAGGTTTCAATAATTGCGTAACGCCCAACTAG
131 GATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
* * * * *
10201165 AATCACGTAAGCTTTTTTTTTTCCAACATAAGAATGTCTCATGTGCTTCGTGTACAGAGACTCTG
196 AATCACGTAAGC--TTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATG
* * * * * * *
10201230 AGAATAAATAAATGACACCTTACTAGATTCACCAAAATCCAATGAGTGTTGCATCAGTGACTGAT
259 AGAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGAT
* * * *
10201295 GACGTCTATAAAAAGTTCGTAATTAATGAAATCCGTAAAATGT
324 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * *
10201338 TGTATTTATGCATGTTTTGCTTTGGAATTTTATTGTCTTTTGTTCGTACATAATACAAAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
* *
10201403 AACTATAACAACCAGCATTATTGTTGGAACTAAAAAAAAGATATATAAATTTAAGGAAGAAAAAA
66 AACTGTAACAACCTGCATTATTGTTGGAACT-AAAAAAAGATATATAAATTTAAGGAAGAAAAAA
* * * * *
10201468 TGACTATAAAGAAATGGCACCACTTCTTACCAAAGAGGTTTCAATAATTGCGTAACACCCAACTA
130 TGATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTA
* * *
10201533 GAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACATACTTCGTGTGCAAAGACTATGA
195 GAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGA
* * * * *
10201598 GAATAAATAAAAGACATCTTACTAGATTCGCGAAACTCCATTGGATGTTGCATCAGTGATTGGTG
260 GAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATG
* * * *
10201663 ACACCTACAAAAAATTTGTAATTAATGAAATCCGCAAAAGAT
325 ACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * *
10201705 TGTATTTATGCATGTTTTGATTTGGACTTTTATTATCTTTTGTTCGTACGGAATATAAAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
* * * *
10201770 TACTGTAACAACCTACTTTATTGTTGGAACTAAAAAATATATATATAAATTTAAGGAAGAAAAAA
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAA-AGATATATAAATTTAAGGAAGAAAAAA
* ** *
10201835 TGATTATCAACAAATGGCACCACCTCTTACCAAAAAGGTTTCAATAATAGCGTAATGCCTAACTA
130 TGATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTA
* *
10201900 GAATCATGTAAGCTTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTC-TGTGCAAAGACTAT
195 GAATCACGTAAGC--TTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTAT
*
10201964 GAGAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTAGGTGTTGCATCAGTGACTGA
258 GAGAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGA
* * *
10202029 TGACATTTATAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGT
323 TGACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* *
10202073 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTTTTGGTACAGAATACAAAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
*
10202138 AACTGTAACAACCTGCTTTATTGTTGGAACT-AAAAAA-ATATATAAATTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * *
10202201 GATTATTAACAAATAGCACCACCTTTTACCAAAGAGGTTTCAATAATTGCGTAACACCCAACTAG
131 GATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
* * *
10202266 AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTACTTCGTGTGTATAGACTATGAG
196 AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGAG
*
10202331 AACAAATAAATGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATGA
261 AACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATGA
*
10202396 CATCTA-AAAATGTTCGTAATTAATGAAATCCGCAAAAGGT
326 CATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
10202436 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
* *
10202501 AACTGTAACAACCTGTATTATTGTTGGAACT-AAAAAATATATATAAATTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * **
10202565 GATTATCAACAAATGGCACCACCTCTTACCAAATAGGTTTCAATAATAACATAATGCCCAACTAG
131 GATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
* ** * *
10202630 AATCGCGTAAGCTTTTTTTTCCAGTGTAAGAATATCTCACGTGCTTCATGTACAGAGACTATGAG
196 AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGAG
* * * * *
10202695 AACAAATAAAGGACACCTTACTAGATTCGCCAAACGCCATTAGGTGTTGCATCAGTGATTGATGA
261 AACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATGA
* * *
10202760 CAGCTACAAAAAGTTCGTAATTAATGAAATCTGTAAAAGGT
326 CATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* *
10202801 TGTATTTATGCATGTTTTGCTTTGGACTTTTAGTAT-TATTT-TTCATACAGAATACAAAAATTC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCT-TTTGTTCGTACAGAATACAAAAATTC
* * * *
10202864 CAACTGTAACAACTTGCTTTATTTTTGGAACTAAAAAAAAGGTATATAAATTTAAGGAAGAAAAA
65 CAACTGTAACAACCTGCATTATTGTTGGAACT-AAAAAAAGATATATAAATTTAAGGAAGAAAAA
* * *
10202929 ATGATTATCAACAAATGGCACCACCTTTTGCCAAAGAGGTTTCAATAATTGCGTAACACCCAACT
129 ATGATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACT
* * * *
10202994 AGAATCACGAAAG--TTTTTTTCCAACGTTAGAATATCTCACGTACTTCGTGTGCATAGACTATG
194 AGAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATG
* *
10203057 AGAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCTGTGACTGAT
259 AGAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGAT
10203122 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
324 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * *
10203165 TGTATTTATGCATGTTTTGCTTTGGAATTTTATTATCTTTTGTTCGTACGGAATACAAAAATTTC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
*
10203230 AACTGTAACAACCTGCATTATTGTTGGAACT-AAAAAATATATATAAATTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * **
10203294 GATTATCAACAAATGGCACCACCTTTTTCCAAAAAGGTTTCAATAATAGCGTAATGCCCAACTAG
131 GATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
* * * *
10203359 AATCACGAAAGC--TTTTTTCCAACGTAAGAATATCTCACGTGTTTTGTGTGCAGAGACTACGAG
196 AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGAG
* * * *
10203422 AACAAATAAAAGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATTAGTTACTGATGA
261 AACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATGA
* *
10203487 CATCTACAAAAAGTTCGCAATTAATGAAATCCGTAAAAGGT
326 CATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * *
10203528 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATATTTTTTTTTCGTACAGAATACAAAAGTT
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTA-T-TATCTTTTGTTCGTACAGAATACAAAAATT
* * * * * *
10203593 CAAACTATAACAACCAGCATTGTTGTTGGAACCAAAAAAAAAGATATATAAATTGAAGGAAGAAA
64 CCAACTGTAACAACCTGCATTATTGTTGGAA-C-TAAAAAAAGATATATAAATTTAAGGAAGAAA
* * *
10203658 AAATGATTATTAACAAATAGCACCACCTCTTACCAAAGAGGTTTCAATAATTGCGTAACACCCAA
127 AAATGATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAA
* * * *
10203723 CTAGAATCACGTAAGCTTTTTTTTCCAATGTAAGAATATCTCAAGTGCTTCGTATGCACAGACTA
192 CTAGAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTA
* * * * ** **
10203788 TAAGAACAAATAAAGGACATCTTATTAGATTCACCAAACTCCATTCCGTGTTGCATCAGTGGTTG
257 TGAGAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTG
* *
10203853 ATGACATCTACAAAAAGTTTGTAATTAATGATATCCGCAAAAGGT
322 ATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * * *
10203898 TGTATTTATGCATGTTTTGCTTTGAAC-TTTATTATCTCTTATTCGTACAGAATACACAAATTTC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACA-AAAATTC
* * * * * * * *
10203962 AAACTATGACAGCCTGCATTATTAG-TGAAACTAAAAAAATATATATAAATTTAAAGAAGAAAGA
65 CAACTGTAACAACCTGCATTATT-GTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAA
* ** * * **
10204026 ATGATTATCGACAAATGGCACCACCTCTTTGCAATGAGGTTTTAATAATAGCGTAATGCCCAACT
129 ATGATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACT
* * * * *
10204091 AAAATCATGTAAGCTTTTTTTTTCCAACGTAAGAATATCTCATGTGTTTTGTGTGCAGAG-CGTA
194 AGAATCACGTAAGC-TTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGAC-TA
* * * ** * *
10204155 TGAGAATAAATAAAAGATATCTTACTAGATTCTCCAAACTCCATTAAGTATTGCGTCAGTGACTG
257 TGAGAACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTG
* *
10204220 ATGACATCTACAAAAAGTTCGTAATTAATGAATTTCGCAAAA
322 ATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAA
10204262 TGTTACAAAA
Statistics
Matches: 2934, Mismatches: 332, Indels: 51
0.88 0.10 0.02
Matches are distributed among these distances:
363 440 0.15
364 518 0.18
365 264 0.09
366 364 0.12
367 491 0.17
368 553 0.19
369 141 0.05
370 163 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (366 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
GATTATCAACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGAG
AACAAATAAAAGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATGA
CATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
Found at i:10204838 original size:32 final size:32
Alignment explanation
Indices: 10204793--10204856 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
10204783 AACGTCCAAC
10204793 AAGATCTAAAATATCCTTCGA-TTATTTATAAT
1 AAGATCTAAAATATCCTT-GAGTTATTTATAAT
* * *
10204825 AAGATTTAGAATATCCTTTAGTTATTTATAAT
1 AAGATCTAAAATATCCTTGAGTTATTTATAAT
10204857 TGTTATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (32 bp):
AAGATCTAAAATATCCTTGAGTTATTTATAAT
Found at i:10210042 original size:18 final size:18
Alignment explanation
Indices: 10210019--10210054 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
10210009 TATATTGCAT
10210019 GCAACTATGTATTAGGAA
1 GCAACTATGTATTAGGAA
*
10210037 GCAACTATGTTTTAGGAA
1 GCAACTATGTATTAGGAA
10210055 ACTACTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (18 bp):
GCAACTATGTATTAGGAA
Found at i:10210061 original size:18 final size:18
Alignment explanation
Indices: 10210020--10210061 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10210010 ATATTGCATG
*
10210020 CAACTATGTATTAGGAAG
1 CAACTATGTATTAGGAAA
*
10210038 CAACTATGTTTTAGGAAA
1 CAACTATGTATTAGGAAA
*
10210056 CTACTA
1 CAACTA
10210062 AGTCCAGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (18 bp):
CAACTATGTATTAGGAAA
Found at i:10211605 original size:23 final size:23
Alignment explanation
Indices: 10211562--10211605 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
10211552 TTTAGAAAAA
* *
10211562 TCAATTTACTTACGAGTTATTAT
1 TCAATATACTGACGAGTTATTAT
10211585 TCAATATACTGAC-AGTGTATT
1 TCAATATACTGACGAGT-TATT
10211606 TTTTTATTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (23 bp):
TCAATATACTGACGAGTTATTAT
Found at i:10211675 original size:16 final size:15
Alignment explanation
Indices: 10211645--10211673 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10211635 TATTATGTAT
10211645 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
10211660 TTTTTTAAATATTT
1 TTTTTTAAATATTT
10211674 TACTATATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:10221050 original size:43 final size:43
Alignment explanation
Indices: 10220989--10221082 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
10220979 ATCCTAATTG
10220989 AGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-
1 AGAAAATAGTTCCCTTATTCTAATAAACTA-TAAAACATAAAAT
* *
10221032 AGAAAATAGTTCCCTTATTCTAGTAAACTATAAAAGATAAAAT
1 AGAAAATAGTTCCCTTATTCTAATAAACTATAAAACATAAAAT
*
10221075 AAAAAATA
1 AGAAAATA
10221083 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 11 0.23
43 36 0.77
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (43 bp):
AGAAAATAGTTCCCTTATTCTAATAAACTATAAAACATAAAAT
Found at i:10221126 original size:19 final size:18
Alignment explanation
Indices: 10221104--10221143 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
10221094 TGAATAAAAC
10221104 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
10221123 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
10221141 TTA
1 TTA
10221144 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:10225792 original size:43 final size:43
Alignment explanation
Indices: 10225729--10225821 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
10225719 TCCTAATTGG
10225729 AAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-
1 AAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAT
* * *
10225771 AGAAAATAGTTCCCTTGTTCTAGTAAACTACTAAAAGATAAAAT
1 A-AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAT
10225815 AAAAATA
1 AAAAATA
10225822 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 1 0.02
43 44 0.96
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (43 bp):
AAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAT
Found at i:10225865 original size:19 final size:18
Alignment explanation
Indices: 10225843--10225882 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
10225833 TGAATAAAAC
10225843 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
10225862 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
10225880 TTA
1 TTA
10225883 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:10228431 original size:141 final size:143
Alignment explanation
Indices: 10228158--10228438 Score: 426
Period size: 141 Copynumber: 2.0 Consensus size: 143
10228148 TTCACAACAA
10228158 AGCCATAATGAAAAAAACCCATTCCTTACCATAGGAACATTCTTCATAAAGCTGTAGTTACAGCA
1 AGCCATAATGAAAAAAACCCATTCCTTACCATAGGAACATTCTTCATAAAGCTGTAGTTACAGCA
* * * *
10228223 AGCTGTTAAAAGACAGGTGTTTAAAGAAAGTTGCTCCTCCTAGAAGTTGATTCCTATTTGCTCTG
66 AACTGTTAAAAGACAGGTGTTCAAAGAAAGTTGCTCCTCCTACAAGTTGATTCCTATTAGCTCTG
*
10228288 GCTATTGCTTGAT
131 GCTACTGCTTGAT
10228301 AGCCATAATG-AAAAAA-CCATTCCTTACCAT-GGAAACATTCTTCATAAAGCTGTAGTTACAGC
1 AGCCATAATGAAAAAAACCCATTCCTTACCATAGG-AACATTCTTCATAAAGCTGTAGTTACAGC
* ** * *
10228363 AAACTGTTAAAAGACAGGTGTTCAAAGAAAGTTGTTGTTTCC-ACAAGTTGATTCTTATTAGCTT
65 AAACTGTTAAAAGACAGGTGTTCAAAGAAAGTTGCT-CCTCCTACAAGTTGATTCCTATTAGCTC
10228427 TGGCTACTGCTT
129 TGGCTACTGCTT
10228439 TATAAAAGCT
Statistics
Matches: 126, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
140 2 0.02
141 105 0.83
142 9 0.07
143 10 0.08
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (143 bp):
AGCCATAATGAAAAAAACCCATTCCTTACCATAGGAACATTCTTCATAAAGCTGTAGTTACAGCA
AACTGTTAAAAGACAGGTGTTCAAAGAAAGTTGCTCCTCCTACAAGTTGATTCCTATTAGCTCTG
GCTACTGCTTGAT
Found at i:10229097 original size:16 final size:15
Alignment explanation
Indices: 10229073--10229139 Score: 55
Period size: 15 Copynumber: 4.2 Consensus size: 15
10229063 AATATCAAAA
10229073 AAATGTAAAAAAATTT
1 AAAT-TAAAAAAATTT
* *
10229089 AAATCT-AAAAAAGTA
1 AAAT-TAAAAAAATTT
10229104 AAATTAAAAAAATATTT
1 AAATT-AAAAAA-ATTT
*
10229121 AAAATTATAAAAATTT
1 -AAATTAAAAAAATTT
10229137 AAA
1 AAA
10229140 AGAAATAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 1 0.02
15 14 0.34
16 14 0.34
17 7 0.17
18 5 0.12
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (15 bp):
AAATTAAAAAAATTT
Found at i:10236077 original size:8 final size:8
Alignment explanation
Indices: 10236064--10236093 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
10236054 GGGTCTGTCC
10236064 CCCCCCCT
1 CCCCCCCT
10236072 CCCCCCCT
1 CCCCCCCT
10236080 CCCCCCC-
1 CCCCCCCT
10236087 CCCCCCC
1 CCCCCCC
10236094 CGGGAGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.00, C:0.93, G:0.00, T:0.07
Consensus pattern (8 bp):
CCCCCCCT
Found at i:10236084 original size:18 final size:17
Alignment explanation
Indices: 10236061--10236094 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
10236051 CAAGGGTCTG
10236061 TCCCCCCCCCTCCCCCCC
1 TCCCCCCCCC-CCCCCCC
10236079 TCCCCCCCCCCCCCCC
1 TCCCCCCCCCCCCCCC
10236095 GGGAGAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.00, C:0.91, G:0.00, T:0.09
Consensus pattern (17 bp):
TCCCCCCCCCCCCCCCC
Found at i:10236085 original size:15 final size:14
Alignment explanation
Indices: 10236062--10236094 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10236052 AAGGGTCTGT
10236062 CCCCCCCCCTCCCC
1 CCCCCCCCCTCCCC
10236076 CCCTCCCCCC-CCCC
1 CCC-CCCCCCTCCCC
10236090 CCCCC
1 CCCCC
10236095 GGGAGAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 10 0.56
15 6 0.33
ACGTcount: A:0.00, C:0.94, G:0.00, T:0.06
Consensus pattern (14 bp):
CCCCCCCCCTCCCC
Found at i:10236085 original size:16 final size:15
Alignment explanation
Indices: 10236064--10236093 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
10236054 GGGTCTGTCC
10236064 CCCCCCCTCCCCCCCT
1 CCCCCCC-CCCCCCCT
10236080 CCCCCCCCCCCCCC
1 CCCCCCCCCCCCCC
10236094 CGGGAGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.93, G:0.00, T:0.07
Consensus pattern (15 bp):
CCCCCCCCCCCCCCT
Found at i:10236085 original size:17 final size:16
Alignment explanation
Indices: 10236063--10236094 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10236053 AGGGTCTGTC
10236063 CCCCCCCCTCCCCCCCT
1 CCCCCCCC-CCCCCCCT
10236080 CCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCC
10236095 GGGAGAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.00, C:0.94, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCCCCCCCCCCCCCT
Found at i:10250413 original size:13 final size:13
Alignment explanation
Indices: 10250395--10250420 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10250385 ATTATATGAA
10250395 ATTAATATTACTT
1 ATTAATATTACTT
10250408 ATTAATATTACTT
1 ATTAATATTACTT
10250421 TTTACTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTAATATTACTT
Found at i:10253819 original size:6 final size:6
Alignment explanation
Indices: 10253808--10253846 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
10253798 AATTTATCTC
*
10253808 ATATTT ATATTT ATATTT ATATTT ATATTT ATTTTT ATA
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATA
10253847 GTTTGTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
ATATTT
Found at i:10256934 original size:65 final size:65
Alignment explanation
Indices: 10256868--10257006 Score: 172
Period size: 65 Copynumber: 2.1 Consensus size: 65
10256858 CAAGAGCTTT
* *
10256868 GGAAGACTCAATATCT-CATTCAGGATCTTGAAATTGAGAAGACCTGATATCTCATTCAGAAGTT
1 GGAAGA-TCAATAT-TGCATTCAGGAGCTTGAAATTGAGAAGACCTAATATCTCATTCAGAAGTT
10256932 TG
64 TG
* * * * * * *
10256934 GGAAGATCGATATTGCATTTAGGAGCTTGAGATTGAGAAGACTTAATATCTCGTTCAGGAGATTG
1 GGAAGATCAATATTGCATTCAGGAGCTTGAAATTGAGAAGACCTAATATCTCATTCAGAAGTTTG
10256999 GGAAGATC
1 GGAAGATC
10257007 CGATTTTTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
64 1 0.02
65 56 0.89
66 6 0.10
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (65 bp):
GGAAGATCAATATTGCATTCAGGAGCTTGAAATTGAGAAGACCTAATATCTCATTCAGAAGTTTG
Found at i:10259094 original size:36 final size:36
Alignment explanation
Indices: 10259054--10259129 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
10259044 TGTAATAGCT
*
10259054 TTATTTATTTGCAGGCCCCTTTCATTAGTCATCTTG
1 TTATTTATTTGCAGCCCCCTTTCATTAGTCATCTTG
10259090 TTATTTATTTGCAGCCCCCTTTCATTAGTCATCTTG
1 TTATTTATTTGCAGCCCCCTTTCATTAGTCATCTTG
10259126 TTAT
1 TTAT
10259130 GTGTTCGGAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.17, C:0.22, G:0.12, T:0.49
Consensus pattern (36 bp):
TTATTTATTTGCAGCCCCCTTTCATTAGTCATCTTG
Found at i:10259876 original size:18 final size:18
Alignment explanation
Indices: 10259841--10259895 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 18
10259831 CGTGATCCGA
*
10259841 TTGAAAA-ACGAGAATTT
1 TTGAAAACACGAAAATTT
* *
10259858 TTTAAAACACTAAAA-TT
1 TTGAAAACACGAAAATTT
10259875 TTGAAAACACGAAAATTT
1 TTGAAAACACGAAAATTT
10259893 TTG
1 TTG
10259896 GGATCAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 21 0.68
18 10 0.32
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (18 bp):
TTGAAAACACGAAAATTT
Found at i:10260465 original size:26 final size:27
Alignment explanation
Indices: 10260422--10260475 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
10260412 TATGTATACC
* *
10260422 AAATAATACATAATAATA-TTAAAATA
1 AAATAATACATAACAATAGTGAAAATA
10260448 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATAGTGAAAATA
10260475 A
1 A
10260476 TAAGCATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 15 0.62
27 8 0.33
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.26
Consensus pattern (27 bp):
AAATAATACATAACAATAGTGAAAATA
Found at i:10260510 original size:18 final size:17
Alignment explanation
Indices: 10260484--10260537 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
10260474 AATAAGCATA
10260484 ATAATAAATATAATGATAT
1 ATAA-AAATATAAT-ATAT
*
10260503 ATAAAAATACTACTATAT
1 ATAAAAATA-TAATATAT
*
10260521 ATAAAAGTAT-ATATAT
1 ATAAAAATATAATATAT
10260537 A
1 A
10260538 CGTACAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.19
17 1 0.03
18 17 0.55
19 7 0.23
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (17 bp):
ATAAAAATATAATATAT
Found at i:10260601 original size:30 final size:31
Alignment explanation
Indices: 10260558--10260639 Score: 82
Period size: 30 Copynumber: 2.7 Consensus size: 31
10260548 AATATATACT
* *
10260558 AATATTAATAATAAATATAATAG-GGGTAAA
1 AATAATAATAATAAATATAATAGAGAGTAAA
* *
10260588 AATAAGT-ATAAT-AATATATTAGATAGTAAA
1 AATAA-TAATAATAAATATAATAGAGAGTAAA
10260618 AATAATAATAATAACA-ATAATA
1 AATAATAATAATAA-ATATAATA
10260640 ATAATATGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
29 10 0.24
30 24 0.57
31 7 0.17
32 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (31 bp):
AATAATAATAATAAATATAATAGAGAGTAAA
Found at i:10260603 original size:3 final size:3
Alignment explanation
Indices: 10260595--10260645 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
10260585 AAAAATAAGT
* * * *
10260595 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10260640 ATA ATA
1 ATA ATA
10260646 TGTGAAGGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:10260956 original size:29 final size:30
Alignment explanation
Indices: 10260924--10260980 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
10260914 ATTAGCAGCG
* *
10260924 TGAAAATGATAA-AATAACAAATATTTAAA
1 TGAAAATAATAAGAACAACAAATATTTAAA
*
10260953 TGAAGATAATAAGAACAACAAATATTTA
1 TGAAAATAATAAGAACAACAAATATTTA
10260981 GAAAGTAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (30 bp):
TGAAAATAATAAGAACAACAAATATTTAAA
Found at i:10269465 original size:13 final size:14
Alignment explanation
Indices: 10269444--10269472 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10269434 TGAAAAATGG
10269444 ATTAGAAAATATTT
1 ATTAGAAAATATTT
10269458 ATTA-AAAATATTT
1 ATTAGAAAATATTT
10269471 AT
1 AT
10269473 GAATTTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:10270550 original size:15 final size:15
Alignment explanation
Indices: 10270527--10270570 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
10270517 TATCAAATTT
10270527 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
10270542 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
10270557 ATATTGATTGAAAT
1 ATATTGATTGAAAT
10270571 ATAATATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:10270907 original size:27 final size:28
Alignment explanation
Indices: 10270877--10270945 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 28
10270867 AATGCCTTAT
*
10270877 TGGTGTGTTTGGCAGGA-TATGATA-TAC
1 TGGTGTGTTTGG-AGGATTATAATATTAC
*
10270904 TGGTGTGTTATGGAGGATTTATAATATTCC
1 TGGTGTGTT-TGGAGGA-TTATAATATTAC
10270934 TGGTGTGTTTGG
1 TGGTGTGTTTGG
10270946 GTTGGATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
27 13 0.36
28 3 0.08
29 9 0.25
30 11 0.31
ACGTcount: A:0.19, C:0.06, G:0.33, T:0.42
Consensus pattern (28 bp):
TGGTGTGTTTGGAGGATTATAATATTAC
Found at i:10273437 original size:13 final size:13
Alignment explanation
Indices: 10273419--10273446 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10273409 TATATATATA
10273419 AAAGAAACAAAAG
1 AAAGAAACAAAAG
10273432 AAAGAAACAAAAG
1 AAAGAAACAAAAG
10273445 AA
1 AA
10273447 TAAAAAGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAGAAACAAAAG
Found at i:10274221 original size:15 final size:15
Alignment explanation
Indices: 10274201--10274257 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
10274191 CGATGAATTT
10274201 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
10274216 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
10274231 ATTGAATTTATATTG
1 ATTGAATTTATATTG
10274246 ATTGAA-TTATAT
1 ATTGAATTTATAT
10274258 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:10274658 original size:23 final size:23
Alignment explanation
Indices: 10274628--10274710 Score: 84
Period size: 21 Copynumber: 3.8 Consensus size: 23
10274618 GCTTTATCGA
* *
10274628 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
10274651 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
10274672 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
10274694 T-AGGCACTTTATGTGTC
1 TCAGGCACCTCATGTGTC
10274711 ATATACTGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
21 33 0.63
22 1 0.02
23 18 0.35
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:10274675 original size:21 final size:21
Alignment explanation
Indices: 10274640--10274700 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 21
10274630 AGGCACTTTA
10274640 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
10274663 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
10274684 TGTGTCGTTTTAGGCAC
1 TGTGTCGTATCAGGCAC
10274701 TTTATGTGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 27 0.75
23 9 0.25
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:10274897 original size:18 final size:19
Alignment explanation
Indices: 10274876--10274916 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
10274866 AATGAAATGA
10274876 GAAATTGA-AT-TGAGAATT
1 GAAATTGATATATGAG-ATT
10274894 GAAATTGATATATGAGATT
1 GAAATTGATATATGAGATT
10274913 GAAA
1 GAAA
10274917 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (19 bp):
GAAATTGATATATGAGATT
Found at i:10279995 original size:18 final size:17
Alignment explanation
Indices: 10279965--10279998 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10279955 GATCCGATTG
*
10279965 AAAAACGAGAATTTTTT
1 AAAAACGAAAATTTTTT
10279982 AAAACACGAAAATTTTT
1 AAAA-ACGAAAATTTTT
10279999 GGGATCCGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (17 bp):
AAAAACGAAAATTTTTT
Found at i:10280573 original size:26 final size:27
Alignment explanation
Indices: 10280530--10280583 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
10280520 TATATATACC
*
10280530 AAATAATACATAATAATACT-AAAATA
1 AAATAATACATAACAATACTGAAAATA
*
10280556 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATACTGAAAATA
10280583 A
1 A
10280584 TAAGCATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 16 0.67
27 7 0.29
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (27 bp):
AAATAATACATAACAATACTGAAAATA
Found at i:10280618 original size:18 final size:17
Alignment explanation
Indices: 10280592--10280645 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
10280582 AATAAGCATA
10280592 ATAATAAATATAATGATAT
1 ATAA-AAATATAAT-ATAT
*
10280611 ATAAAAATAATACTATAT
1 ATAAAAAT-ATAATATAT
*
10280629 ATAAAAGTAT-ATATAT
1 ATAAAAATATAATATAT
10280645 A
1 A
10280646 CGTACAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 15 0.48
19 8 0.26
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
ATAAAAATATAATATAT
Found at i:10280711 original size:3 final size:3
Alignment explanation
Indices: 10280703--10280753 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
10280693 AAAAATAAGT
* * * *
10280703 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10280748 ATA ATA
1 ATA ATA
10280754 TATGAAGGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:10281063 original size:29 final size:30
Alignment explanation
Indices: 10281031--10281087 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
10281021 ATTAGCAGCG
* *
10281031 TGAAAATGATAA-AATAACAAATATTTAAA
1 TGAAAATAATAAGAACAACAAATATTTAAA
*
10281060 TGAAGATAATAAGAACAACAAATATTTA
1 TGAAAATAATAAGAACAACAAATATTTA
10281088 GAAAGTAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (30 bp):
TGAAAATAATAAGAACAACAAATATTTAAA
Found at i:10285203 original size:20 final size:20
Alignment explanation
Indices: 10285149--10285203 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
10285139 TGAGTAAATT
10285149 AATTT-AAATTTAATTTATAA
1 AATTTCAAATTT-ATTTATAA
* **
10285169 TATTTCAAAAATATTT-TAA
1 AATTTCAAATTTATTTATAA
10285188 GAATTTCAAATTTATT
1 -AATTTCAAATTTATT
10285204 ATCAAATATG
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
19 3 0.11
20 20 0.74
21 4 0.15
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (20 bp):
AATTTCAAATTTATTTATAA
Found at i:10298281 original size:235 final size:225
Alignment explanation
Indices: 10297953--10298421 Score: 638
Period size: 235 Copynumber: 2.0 Consensus size: 225
10297943 ATGATTAATA
* **
10297953 TTTAGGGCTAATGTTTTAGTTTTCAACTTTCAAGGTTTAGTGTTCATGTTCCAAGATTTTCTTTT
1 TTTAGGGTTAATGTTTTAGTTTTCAACTTTCAAGGTTTAGTGTTCACATTCCAAGATTTTCTTTT
***
10298018 AGGGTTTATGGTCTTGGTACCCAATGCTTTTA-TTT-CACCTTTTATGATTTTTAGGGTTTAAAA
66 AGGGTTTACAATCTTGGTACCCAATGCTTTTATTTTGCA-CTTTTATGATTTTTAGGGTTTAAAA
* *
10298081 GGTAAGGCTAGGGCTTATGAATTTTGTTTTATGGTTTAGGATTTAGGATTTTA-AGGTTTATAAT
130 GGTAAGACTAGGGCTTATGAAATTTGTTTTATGGTTT---A---A-GA-TTTACA-GTTTATAAT
*
10298145 TTTATTGTTTATATTTGTGTTTTAAGGTTTTATCTTTTTTCT
186 TTTATTGTTTATATTTGGGTTTTAAGGTTTTA--TTTTTTCT
* * **
10298187 TTTAGGGTTAATGTTTTAGTGTTTTAATTTTCAAGGTTTAGTGTTCACATTTTAAGATTTTCTTT
1 TTTAGGGTTAATGTTTTAGT-TTTCAACTTTCAAGGTTTAGTGTTCACATTCCAAGATTTTCTTT
* * *
10298252 TGGGGTTTACAATCTTGGTACCCAATGCTTTTATTTTGCAGTTTTATGATTTTTAGGGTTTAAGA
65 TAGGGTTTACAATCTTGGTACCCAATGCTTTTATTTTGCACTTTTATGATTTTTAGGGTTTAAAA
* *
10298317 GGTAAGATTAGTGCTTATGAAATTTGTTTTATGGTTTAAGATTTACAGTTTATAATTTTATTGTT
130 GGTAAGACTAGGGCTTATGAAATTTGTTTTATGGTTTAAGATTTACAGTTTATAATTTTATTGTT
10298382 TATATTTGGGTTTTAAGGTTTTATTTTTTCT
195 TATATTTGGGTTTTAAGGTTTTATTTTTTCT
10298413 TTTAGGGTT
1 TTTAGGGTT
10298422 TCAAGGCTAG
Statistics
Matches: 213, Mismatches: 18, Indels: 16
0.86 0.07 0.06
Matches are distributed among these distances:
226 17 0.08
228 44 0.21
229 3 0.01
230 1 0.00
233 1 0.00
234 19 0.09
235 67 0.31
236 59 0.28
237 2 0.01
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (225 bp):
TTTAGGGTTAATGTTTTAGTTTTCAACTTTCAAGGTTTAGTGTTCACATTCCAAGATTTTCTTTT
AGGGTTTACAATCTTGGTACCCAATGCTTTTATTTTGCACTTTTATGATTTTTAGGGTTTAAAAG
GTAAGACTAGGGCTTATGAAATTTGTTTTATGGTTTAAGATTTACAGTTTATAATTTTATTGTTT
ATATTTGGGTTTTAAGGTTTTATTTTTTCT
Found at i:10298420 original size:28 final size:28
Alignment explanation
Indices: 10298372--10298427 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
10298362 CAGTTTATAA
*
10298372 TTTTATTGTTTATATTTGGGTTTTAAGG
1 TTTTATTGTTTATATTTGGGTTTCAAGG
* *
10298400 TTTTATTTTTTCT-TTTAGGGTTTCAAGG
1 TTTTATTGTTTATATTT-GGGTTTCAAGG
10298428 CTAGAGTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.16, C:0.04, G:0.20, T:0.61
Consensus pattern (28 bp):
TTTTATTGTTTATATTTGGGTTTCAAGG
Found at i:10308336 original size:17 final size:16
Alignment explanation
Indices: 10308316--10308361 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
10308306 AAAAAAACTT
*
10308316 AAAATTTTAAAAATTAC
1 AAAATTTTAAAAA-TAA
10308333 AAAATTTTAAAAATAA
1 AAAATTTTAAAAATAA
10308349 AAAATATTTAAAA
1 AAAAT-TTTAAAA
10308362 TTCAAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 7 0.26
17 20 0.74
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATTTTAAAAATAA
Found at i:10308344 original size:16 final size:16
Alignment explanation
Indices: 10308316--10308368 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
10308306 AAAAAAACTT
10308316 AAAATTTTAAAAATTAC
1 AAAATTTT-AAAATTAC
* *
10308333 AAAATTTTAAAAATAA
1 AAAATTTTAAAATTAC
10308349 AAAATATTTAAAATT-C
1 AAAAT-TTTAAAATTAC
10308365 AAAA
1 AAAA
10308369 CTTAAAATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 15 0.48
17 16 0.52
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAATTTTAAAATTAC
Found at i:10314505 original size:19 final size:19
Alignment explanation
Indices: 10314481--10314518 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
10314471 ATATTCATAC
*
10314481 GGTTCATGATTAAGAAAAT
1 GGTTCATAATTAAGAAAAT
*
10314500 GGTTCATAATTGAGAAAAT
1 GGTTCATAATTAAGAAAAT
10314519 TATGCATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (19 bp):
GGTTCATAATTAAGAAAAT
Found at i:10315667 original size:15 final size:15
Alignment explanation
Indices: 10315644--10315681 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
10315634 AATTCAGTAC
*
10315644 TTAAATTTTTAA-TA
1 TTAATTTTTTAACTA
10315658 TTTAATTTTTTAACTA
1 -TTAATTTTTTAACTA
10315674 TTAATTTT
1 TTAATTTT
10315682 CAATTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 19 0.90
16 2 0.10
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAATTTTTTAACTA
Found at i:10321761 original size:22 final size:22
Alignment explanation
Indices: 10321733--10321777 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
10321723 ACCAGCTGTT
10321733 TAAATATATATTTATATATTCA
1 TAAATATATATTTATATATTCA
10321755 TAAATATATATTTATATATTCA
1 TAAATATATATTTATATATTCA
10321777 T
1 T
10321778 TTATTTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
TAAATATATATTTATATATTCA
Found at i:10337313 original size:31 final size:31
Alignment explanation
Indices: 10337276--10337364 Score: 92
Period size: 31 Copynumber: 2.9 Consensus size: 31
10337266 AAATGCCTAT
*
10337276 AATTAAAATAAAATTAAAATTTTATGTATAC
1 AATTAAAATAAAATTAAAATTTTATATATAC
* * * * * *
10337307 ATTTAAATTAAAATCAAAGTATTATATATAT
1 AATTAAAATAAAATTAAAATTTTATATATAC
*
10337338 AATT-ACATAAAATTAAAA-TTTATATAT
1 AATTAAAATAAAATTAAAATTTTATATAT
10337365 CAAAATATAC
Statistics
Matches: 45, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 8 0.18
30 10 0.22
31 27 0.60
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.40
Consensus pattern (31 bp):
AATTAAAATAAAATTAAAATTTTATATATAC
Found at i:10337376 original size:31 final size:28
Alignment explanation
Indices: 10337283--10337389 Score: 70
Period size: 31 Copynumber: 3.5 Consensus size: 28
10337273 TATAATTAAA
* * * *
10337283 ATAAAATTAAAATTTTATGTATACATTTAA
1 ATAAAA-TAAAA-TTTATATATAAAATTAC
* *
10337313 ATTAAAATCAAAGTATTATATATATAATTAC
1 A-TAAAAT-AAAAT-TTATATATAAAATTAC
10337344 ATAAAATTAAAATTTATATATCAAAATATAC
1 ATAAAA-TAAAATTTATATAT-AAAAT-TAC
* *
10337375 ATTAAATCAAATTTA
1 ATAAAATAAAATTTA
10337390 GTATCCTGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 8 0.13
30 24 0.39
31 30 0.48
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (28 bp):
ATAAAATAAAATTTATATATAAAATTAC
Found at i:10341673 original size:20 final size:20
Alignment explanation
Indices: 10341648--10341688 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10341638 TTCAACATTA
10341648 ATAGAATATTATGTACGTTG
1 ATAGAATATTATGTACGTTG
10341668 ATAGAATATTATGTACGTTG
1 ATAGAATATTATGTACGTTG
10341688 A
1 A
10341689 CAATTGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.39
Consensus pattern (20 bp):
ATAGAATATTATGTACGTTG
Found at i:10343371 original size:29 final size:29
Alignment explanation
Indices: 10343338--10343400 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
10343328 CCAAATTAAA
10343338 CACCCTACTAAACCGAT-CACTAACTCCAT
1 CACCCTACTAAACC-ATCCACTAACTCCAT
*
10343367 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCTACTAAACCATCCACTAACTCCAT
10343396 CACCC
1 CACCC
10343401 CCACACCCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 2 0.06
29 30 0.94
ACGTcount: A:0.32, C:0.48, G:0.02, T:0.19
Consensus pattern (29 bp):
CACCCTACTAAACCATCCACTAACTCCAT
Found at i:10343413 original size:37 final size:37
Alignment explanation
Indices: 10343367--10343441 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
10343357 CTAACTCCAT
10343367 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
* *
10343404 CACCCTACTAAACCGTCCACTACCTCTATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
10343441 C
1 C
10343442 TACATCCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.28, C:0.53, G:0.01, T:0.17
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:10343443 original size:18 final size:18
Alignment explanation
Indices: 10343383--10343455 Score: 60
Period size: 18 Copynumber: 4.0 Consensus size: 18
10343373 ACTAAACCAT
10343383 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
10343401 CCAC-ACC-CTACTAAACCGT
1 CCACTACCTCCA-T-CACC-C
*
10343420 CCACTACCTCTATCACCC
1 CCACTACCTCCATCACCC
*
10343438 CCACTACATCCATCACCC
1 CCACTACCTCCATCACCC
10343456 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 23 0.53
19 7 0.16
20 4 0.09
21 3 0.07
ACGTcount: A:0.26, C:0.55, G:0.01, T:0.18
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:10343540 original size:11 final size:12
Alignment explanation
Indices: 10343515--10343545 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
10343505 TTGTATGGGA
10343515 AGGATTTTGGAG
1 AGGATTTTGGAG
10343527 AGGATTTT-GAG
1 AGGATTTTGGAG
10343538 AGGATTTT
1 AGGATTTT
10343546 TGGAAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (12 bp):
AGGATTTTGGAG
Found at i:10343899 original size:19 final size:18
Alignment explanation
Indices: 10343875--10343911 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
10343865 TTATGTTTCA
10343875 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
10343894 TATTATTATATATTTATT
1 TATTATTATATATTTATT
10343912 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:10343923 original size:17 final size:14
Alignment explanation
Indices: 10343883--10343913 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10343873 CATATTATTA
*
10343883 TATTATTTATTTAT
1 TATTATATATTTAT
10343897 TATTATATATTTAT
1 TATTATATATTTAT
10343911 TAT
1 TAT
10343914 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:10344232 original size:21 final size:21
Alignment explanation
Indices: 10344189--10344241 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
10344179 AGCACAATGT
*
10344189 TTATTAC-ATTATTGTATTTA
1 TTATTACTATTATTGTATTAA
* *
10344209 TTATTACTATTGTTTTATTAA
1 TTATTACTATTATTGTATTAA
*
10344230 TTATTTCTATTA
1 TTATTACTATTA
10344242 ATTACTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (21 bp):
TTATTACTATTATTGTATTAA
Found at i:10344270 original size:13 final size:13
Alignment explanation
Indices: 10344221--10344271 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
10344211 ATTACTATTG
10344221 TTTTATTAATTAT
1 TTTTATTAATTAT
* *
10344234 TTCTATTAATTAC
1 TTTTATTAATTAT
* *
10344247 TATTATT-TTTAT
1 TTTTATTAATTAT
*
10344259 TTTTATTATTTAT
1 TTTTATTAATTAT
10344272 ATATGGTTAG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
12 9 0.30
13 21 0.70
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATTAATTAT
Found at i:10344595 original size:126 final size:126
Alignment explanation
Indices: 10344370--10344613 Score: 434
Period size: 126 Copynumber: 1.9 Consensus size: 126
10344360 CATTGATCTT
* * *
10344370 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATATAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATATAAAGAATTCGAAGAACCATGCCCTA
10344435 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
* *
10344496 CTCTCAAAAATTTTCAAAATAAAGGTAATGTTCGGTATTTAAAGAATTCGAAGAACCATGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATATAAAGAATTCGAAGAACCATGCCCTA
*
10344561 ACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
10344614 AGGTACAAAC
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 112 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATATAAAGAATTCGAAGAACCATGCCCTA
ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:10345567 original size:18 final size:18
Alignment explanation
Indices: 10345535--10345569 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10345525 CCTACCCTAG
10345535 TTAGGGTTACGCCAAATC
1 TTAGGGTTACGCCAAATC
10345553 TTAGTGGTTAC-CCAAAT
1 TTAG-GGTTACGCCAAAT
10345570 AGGTGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (18 bp):
TTAGGGTTACGCCAAATC
Found at i:10345958 original size:19 final size:19
Alignment explanation
Indices: 10345936--10345982 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
10345926 GACGTCTTCT
*
10345936 TTTGCATT-CATCCCATGCA
1 TTTGCATTACATCACAT-CA
10345955 TTTGCATTACATCACATCA
1 TTTGCATTACATCACATCA
*
10345974 TGTGCATTA
1 TTTGCATTA
10345983 ATTCAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (19 bp):
TTTGCATTACATCACATCA
Found at i:10355800 original size:26 final size:25
Alignment explanation
Indices: 10355758--10355835 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
10355748 TTCACTTTAA
* *
10355758 AAAAAAAAGAAGAGAAAAAGGAAAG
1 AAAAAAAAGAAAAGAAAAAGAAAAG
*
10355783 AAAAAAAGGAAAAGGAAAAAGAAAAG
1 AAAAAAAAGAAAA-GAAAAAGAAAAG
* *
10355809 -AAAAACA-AAAAGAGAAAGAAAAG
1 AAAAAAAAGAAAAGAAAAAGAAAAG
10355832 AAAA
1 AAAA
10355836 GCAAATGAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 11 0.24
24 7 0.16
25 16 0.36
26 11 0.24
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (25 bp):
AAAAAAAAGAAAAGAAAAAGAAAAG
Found at i:10355809 original size:5 final size:5
Alignment explanation
Indices: 10355757--10355836 Score: 54
Period size: 5 Copynumber: 15.0 Consensus size: 5
10355747 CTTCACTTTA
* * * *
10355757 AAAAA AAAAG AAGAG AAAAAG GAAAG AAAA- AAAGG AAAAGG AAAAAG
1 AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAAA-G -AAAAG
*
10355804 AAAAG AAAAACA AAAAG AGAAAG AAAAG AAAAG
1 AAAAG -AAAA-G AAAAG A-AAAG AAAAG AAAAG
10355837 CAAATGAGAG
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
4 3 0.05
5 33 0.56
6 19 0.32
7 4 0.07
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:10355813 original size:6 final size:6
Alignment explanation
Indices: 10355756--10355835 Score: 62
Period size: 6 Copynumber: 13.7 Consensus size: 6
10355746 ACTTCACTTT
* *
10355756 AAAAA- AAAAAG -AAGAG AAAAAGG AAAGAA- AAAAAGG AAAAGG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAA-G AAA-AAG AAAAA-G AAAAAG AAAAAG
* *
10355804 -AAAAG AAAAAC AAAAAG AGAAAG -AAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA
10355836 GCAAATGAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
5 20 0.34
6 29 0.49
7 8 0.14
8 2 0.03
ACGTcount: A:0.79, C:0.01, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:10355818 original size:23 final size:23
Alignment explanation
Indices: 10355770--10355840 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
10355760 AAAAAAGAAG
* *
10355770 AGAAAAAGGAAAGAAAAAAAGGAAA
1 AGAAAAAGAAAAGAAAAACA--AAA
10355795 AGGAAAAAGAAAAGAAAAACAAAA
1 A-GAAAAAGAAAAGAAAAACAAAA
* *
10355819 AGAGAAAGAAAAGAAAAGCAAA
1 AGAAAAAGAAAAGAAAAACAAA
10355841 TGAGAGGCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.46
24 4 0.10
25 1 0.02
26 17 0.41
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (23 bp):
AGAAAAAGAAAAGAAAAACAAAA
Found at i:10355835 original size:17 final size:16
Alignment explanation
Indices: 10355756--10355835 Score: 61
Period size: 17 Copynumber: 4.6 Consensus size: 16
10355746 ACTTCACTTT
* *
10355756 AAAAAAAAAAGAAGAG
1 AAAAGAAAAAGAAAAG
*
10355772 AAAAAGGAAAGAAAAAAAGG
1 -AAAA-GAAA-AAGAAAA-G
10355792 AAAAGGAAAAAGAAAAG
1 AAAA-GAAAAAGAAAAG
*
10355809 AAAAACAAAAAGAGAAAG
1 -AAAAGAAAAAGA-AAAG
10355827 AAAAGAAAA
1 AAAAGAAAA
10355836 GCAAATGAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
17 20 0.38
18 17 0.33
19 14 0.27
20 1 0.02
ACGTcount: A:0.79, C:0.01, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAG
Found at i:10357412 original size:135 final size:133
Alignment explanation
Indices: 10357073--10357761 Score: 878
Period size: 135 Copynumber: 5.2 Consensus size: 133
10357063 GATTTCGGCA
* * *
10357073 AGCCTTATC-CCACTGAGCAGGAATGGAGCAGGCTAA-ATACTAGATCTTATCTTCGCTGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGATCTTATCTTCGCTGAGCAG
* *
10357136 GAACG-GAA-TAGATCAAATTTTGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCCA
66 G-A-GTGAAGCAGATCAAATTTTGAGAATCTTATCTCCATGTATCAGCAATGGAGCAGATT-CCA
10357199 ATCATC
128 ATCATC
* *
10357205 AGCCTTATCTTCACTGAGCAGGGAGTGGAGCAGGCTAACATAACAGATC-TATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCA-GGAGTGGAGCAGGCTAACATACCAGATCTTATCTTCGCTGAGCA
* * *
10357269 GGAGTGAAGCAAATCAAATTTTGAAGAATCTTATCTCCATGTATCGGCAATTGAGCA-ATTCCAA
65 GGAGTGAAGCAGATCAAATTTTG-AGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAA
10357333 TCATC
129 TCATC
*
10357338 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AACATACCAGATCTTATCTTCGCT-GAGC
* * *
10357403 AGGAGTGAAGCAGATCAAATTTTGGCGAATCTTACCTCCATGTATCAGCAATTGGAGCAGATTTC
64 AGGAGTGAAGCAGATCAAATTTT-GAGAATCTTATCTCCATGTATCAGCAA-TGGAGCAGATTCC
**
10357468 AGCCATC
127 AATCATC
* * * *
10357475 AGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCTAA-ATACTATATCTTATATTCGCTGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGATCTTATCTTCGCTGAGCAG
* * *
10357539 GAGCGGAGCAGATC-AATTTTGAGAATATTATCTCCATGTATC-GCAATGGAGCA-A-TCC---C
66 GAGTGAAGCAGATCAAATTTTGAGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAATC
10357597 A-C
131 ATC
*
10357599 AGCC-TATCTTCACTGAGCAGGAGTGGAGCAGGGCTAAACATACCAG-GCTTATC-TCGCTGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCA-GGCT-AACATACCAGATCTTATCTTCGCTGAGC
* * *
10357661 AGGAGTGAAGCAG-TCAAAATTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCATATT-CA
64 AGGAGTGAAGCAGATCAAATTTTGA-GAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCA
10357724 ATCATC
128 ATCATC
*
10357730 AGCTTTATCTTCACTGAGCAGGAGTGGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAG
10357762 NNNNNNNNNN
Statistics
Matches: 492, Mismatches: 40, Indels: 51
0.84 0.07 0.09
Matches are distributed among these distances:
123 27 0.05
124 36 0.07
125 28 0.06
126 16 0.03
127 2 0.00
128 3 0.01
129 1 0.00
130 9 0.02
131 9 0.02
132 70 0.14
133 60 0.12
134 75 0.15
135 104 0.21
136 9 0.02
137 43 0.09
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (133 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGATCTTATCTTCGCTGAGCAG
GAGTGAAGCAGATCAAATTTTGAGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAATC
ATC
Found at i:10368722 original size:18 final size:18
Alignment explanation
Indices: 10368690--10368724 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10368680 CCTACCCTAG
10368690 TTAGGGTTACGCCAAATC
1 TTAGGGTTACGCCAAATC
10368708 TTAGTGGTTAC-CCAAAT
1 TTAG-GGTTACGCCAAAT
10368725 AGGTGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (18 bp):
TTAGGGTTACGCCAAATC
Found at i:10369111 original size:19 final size:19
Alignment explanation
Indices: 10369089--10369135 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
10369079 GACGTCTTCT
*
10369089 TTTGCATT-CATCCCATGCA
1 TTTGCATTACATCACAT-CA
10369108 TTTGCATTACATCACATCA
1 TTTGCATTACATCACATCA
*
10369127 TGTGCATTA
1 TTTGCATTA
10369136 ATTCAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (19 bp):
TTTGCATTACATCACATCA
Found at i:10378950 original size:13 final size:12
Alignment explanation
Indices: 10378923--10379004 Score: 62
Period size: 11 Copynumber: 6.8 Consensus size: 12
10378913 ACTTCACTTT
*
10378923 AAAA-AAAAAAG
1 AAAAGAAAAAGG
*
10378934 AAGAGAAAAAGG
1 AAAAGAAAAAGG
10378946 AAAGAGAAAAAAGG
1 AAA-AG-AAAAAGG
10378960 AAAAGGAAAAA-G
1 AAAA-GAAAAAGG
**
10378972 AAAAGAAAAACAA
1 AAAAGAAAAA-GG
*
10378985 AAAAGAGAAA-G
1 AAAAGAAAAAGG
10378996 AAAAGAAAA
1 AAAAGAAAA
10379005 GCAAATGAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
11 17 0.29
12 13 0.22
13 17 0.29
14 11 0.19
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAGG
Found at i:10378977 original size:5 final size:5
Alignment explanation
Indices: 10378924--10379005 Score: 53
Period size: 5 Copynumber: 16.0 Consensus size: 5
10378914 CTTCACTTTA
* * * *
10378924 AAAAA AAAAG AAGAG AAAAAG GAAAG AGAAA- AAAGG AAAAGG AAAAAG
1 AAAAG AAAAG AAAAG -AAAAG AAAAG A-AAAG AAAAG AAAA-G -AAAAG
*
10378972 AAAAG AAAA- ACAA- AAAAG AGAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG
10379006 CAAATGAGAG
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
4 8 0.13
5 35 0.57
6 14 0.23
7 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:10378981 original size:6 final size:6
Alignment explanation
Indices: 10378923--10379004 Score: 55
Period size: 6 Copynumber: 13.7 Consensus size: 6
10378913 ACTTCACTTT
* * *
10378923 AAAAA- AAAAAG -AAGAG AAAAAGG AAAGAG AAAAAAGG AAAAGG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAA-G AAAAAG -AAAAA-G AAAAAG AAAAAG
* *
10378972 -AAAAG AAAAACA AAAAAG AGAAAG -AAAAG AAAA
1 AAAAAG AAAAA-G AAAAAG AAAAAG AAAAAG AAAA
10379005 GCAAATGAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
5 18 0.31
6 22 0.37
7 18 0.31
8 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:10380450 original size:45 final size:45
Alignment explanation
Indices: 10380398--10380606 Score: 162
Period size: 45 Copynumber: 4.6 Consensus size: 45
10380388 AATCATCAGC
10380398 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGAT
* ** ** *
10380443 CTTATCTTCACTGAGCAGGAGTGAAGCA-AATCAAATTTTGA-AGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAA-CATAACAG-AT
* * * * * * * *
10380489 CTTATCTCCA-TGTATC-GGCAATTGAGCAGATTCCAATCAT--CAG-C
1 CTTATCTTCACTG-AGCAGG-AGTGGAGCAG--GCTAAACATAACAGAT
*
10380533 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGAT
*
10380578 CTTATCTTCACTGAGCAGGAGTGAAGCAG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAG
10380607 ATCAAATTTT
Statistics
Matches: 123, Mismatches: 27, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
42 6 0.05
44 23 0.19
45 68 0.55
46 23 0.19
47 1 0.01
48 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (45 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGAT
Found at i:10380516 original size:135 final size:135
Alignment explanation
Indices: 10380263--10381285 Score: 1343
Period size: 135 Copynumber: 7.6 Consensus size: 135
10380253 GATTTCGGCA
* * *
10380263 AGCCTTATC-CCACTGAGCAGGAATGGAGCAGGCT-AA-AT-ACTAGATCTTATCTTCGCTGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAAC-AGATCTTATCTTCACTGAGC
* * *
10380324 AGGAACG-GAA-TAGATCAAATTTTGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTC
65 AGG-A-GTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTC
10380387 CAATCATC
128 CAATCATC
10380395 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* * *
10380460 GGAGTGAAGCAAATCAAATTTTGAAGAATCTTATCTCCATGTATCGGCAATTGAGCAGATTCCAA
66 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
10380525 TCATC
131 TCATC
*
10380530 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
** * * * *
10380595 GGAGTGAAGCAGATCAAATTTTGGCGAATCTTACCTCCATGTATCAGCAATGGAGCAGATTTCAG
66 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
*
10380660 CCATC
131 TCATC
* * * *
10380665 AGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCT-AA-AT-ACTATATCTTATATTCGCTGAGC
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAAC-AGATCTTATCTTCACTGAGC
* * * * * *
10380727 AGGAGCGGAGCAGATCAATTTTTGATGAATATTATCTCCATGTATCGGCAATGGAGCATATTTCA
65 AGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCA
** *
10380792 GCCACC
130 ATCATC
* ** *
10380798 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGGCCTTATCTTCGCTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* * *
10380863 GGAGTGAAGCAGGTCAAAATTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCATATTCCAA
66 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
10380928 TCATC
131 TCATC
* * *
10380933 AGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCATTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* * * * *
10380998 GGAGTGAAGCAAATCAAATTTTGA-CAAGTCTTATCTCCATGTATCGGAAATGGAGTAGATTTCA
66 GGAGTGAAGCAGATCAAATTTTGATGAA-TCTTATCTCCATGTATCGGCAATGGAGCAGATTCCA
** *
10381062 GCCACC
130 ATCATC
* * * * * *
10381068 AGCCTTATTTTCACTAAGCAGGAGTGGAGCAGGCT--ATAT-ACTAGACCTTATCTTCGCTGAGT
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAAC-AGATCTTATCTTCACTGAGC
* *
10381130 AGGAGTGAAGCAGGTCAAATTTTGATGAATCTTATCTCCATGTATCGGCATTGGAGCAGATTCCA
65 AGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCA
10381195 ATCATC
130 ATCATC
* * * *
10381201 AGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTTTCTTTACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
* *
10381266 GGAGTAAAACAGATCAAATT
66 GGAGTGAAGCAGATCAAATT
10381286 ACAGTAGATC
Statistics
Matches: 777, Mismatches: 98, Indels: 29
0.86 0.11 0.03
Matches are distributed among these distances:
132 11 0.01
133 247 0.32
134 14 0.02
135 501 0.64
136 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (135 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTGAGCA
GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAA
TCATC
Found at i:10380815 original size:268 final size:267
Alignment explanation
Indices: 10380263--10381285 Score: 1421
Period size: 268 Copynumber: 3.8 Consensus size: 267
10380253 GATTTCGGCA
* * * *
10380263 AGCCTTATC-CCACTGAGCAGGAATGGAGCAGGCTAA-ATACTAGATCTTATCTTCGCTGAGCAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGACCTTATCTTCGCTGAGCAG
* *
10380326 GAACG-GAA-TAGATCAAATTTTGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCA
66 G-A-GTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCA
10380389 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCAC
129 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACAT-ACAGATCTTATCTTCAC
*
10380454 TGAGCAGGAGTGAAGCAAATCAAATTTTGAAGAATCTTATCTCCATGTATCGGCAATTGAGCAGA
193 TGAGCAGGAGTGAAGCAAATCAAATTTTG-AGAATCTTATCTCCATGTATCGGCAATGGAGCAGA
* ** *
10380519 TTCCAATCATC
257 TTTCAGCCACC
* *
10380530 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AACATACCAGACCTTATCTTCGCTGAGCA
** * * *
10380595 GGAGTGAAGCAGATCAAATTTTGGCGAATCTTACCTCCATGTATCAGCAATGGAGCAGATTTCAG
65 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAA
* * * * *
10380660 CCATCAGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCT-AA-ATACTATATCTTATATTCGCT
130 TCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAC-AGATCTTATCTTCACT
* * * * * *
10380723 GAGCAGGAGCGGAGCAGATCAATTTTTGATGAATATTATCTCCATGTATCGGCAATGGAGCATAT
194 GAGCAGGAGTGAAGCAAATCAAATTTTGA-GAATCTTATCTCCATGTATCGGCAATGGAGCAGAT
10380788 TTCAGCCACC
258 TTCAGCCACC
*
10380798 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGGCCTTATCTTCGCTGAGCA
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AACATACCAGACCTTATCTTCGCTGAGCA
* * * *
10380863 GGAGTGAAGCAGGTCAAAATTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCATATTCCAA
65 GGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAA
* *
10380928 TCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCATT
130 TCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATA-CAGATCTTATCTTCACT
* * *
10380993 GAGCAGGAGTGAAGCAAATCAAATTTTGACAAGTCTTATCTCCATGTATCGGAAATGGAGTAGAT
194 GAGCAGGAGTGAAGCAAATCAAATTTTGAGAA-TCTTATCTCCATGTATCGGCAATGGAGCAGAT
10381058 TTCAGCCACC
258 TTCAGCCACC
* * * * *
10381068 AGCCTTATTTTCACTAAGCAGGAGTGGAGCAGGCT-ATATACTAGACCTTATCTTCGCTGAGTAG
1 AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGACCTTATCTTCGCTGAGCAG
* * *
10381132 GAGTGAAGCAGGTCAAATTTTGATGAATCTTATCTCCATGTATCGGCATTGGAGCAGATTCCAAT
66 GAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAAT
* * *
10381197 CATCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTTTCTTTACTG
131 CATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATA-CAGATCTTATCTTCACTG
* * *
10381262 AGCAGGAGTAAAACAGATCAAATT
195 AGCAGGAGTGAAGCAAATCAAATT
10381286 ACAGTAGATC
Statistics
Matches: 675, Mismatches: 70, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
267 12 0.02
268 424 0.63
269 12 0.02
270 226 0.33
271 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (267 bp):
AGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAACATACCAGACCTTATCTTCGCTGAGCAG
GAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAAT
CATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACAGATCTTATCTTCACTGA
GCAGGAGTGAAGCAAATCAAATTTTGAGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTC
AGCCACC
Found at i:10380988 original size:45 final size:45
Alignment explanation
Indices: 10380801--10381008 Score: 151
Period size: 45 Copynumber: 4.6 Consensus size: 45
10380791 AGCCACCAGC
**
10380801 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGGC
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGAT
* * ***
10380846 CTTATCTTCGCTGAGCAGGAGTGAAGCAGG-TCAAA-ATTTGATGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAACATACCA-G-AT
* * * ** * * *
10380892 CTTATCTCCA-TGTATC-GGCAATGGAGCATATTCCAATCAT--CAGCT
1 CTTATCTTCACTG-AGCAGG-AGTGGAGC--AGGCTAAACATACCAGAT
10380937 -TTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGAT
* *
10380981 CTTATCTTCATTGAGCAGGAGTGAAGCA
1 CTTATCTTCACTGAGCAGGAGTGGAGCA
10381009 AATCAAATTT
Statistics
Matches: 121, Mismatches: 28, Indels: 28
0.68 0.16 0.16
Matches are distributed among these distances:
42 7 0.06
44 25 0.21
45 66 0.55
46 17 0.14
47 1 0.01
48 3 0.02
49 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (45 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGAT
Found at i:10381020 original size:403 final size:403
Alignment explanation
Indices: 10380263--10381270 Score: 1554
Period size: 403 Copynumber: 2.5 Consensus size: 403
10380253 GATTTCGGCA
*
10380263 AGCCTTATC-CCACTGAGCAGGAA-TGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAG
1 AGCCTTATCTTCACTGAGCA-GAAGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAG
* ** * *
10380326 GAACGGAATAGATCAAATTTTGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTCCAAT
65 GAGCGGAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAAT
*
10380391 CATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAACAGATCTTATCTTCACTG
130 CATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTG
* *
10380456 AGCAGGAGTGAAGCAAATCAAATTTTGAAGAATCTTATCTCCATGTATCGGCAATTGAGCAGATT
195 AGCAGGAGTGAAGCAAATCAAAATTTGAAGAATCTTATCTCCATGTATCGGCAATGGAGCAGATT
10380521 CCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTT
260 CCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTT
* * *
10380586 CACTGAGCAGGAGTGAAGCAGATCAAATTTTGGCGAA-TCTTACCTCCATGTATCAGCAATGGAG
325 CACTGAGCAGGAGTGAAGCAAATCAAATTTTGAC-AAGTCTTACCTCCATGTATCAGAAATGGAG
*
10380650 CAGATTTCAGCCATC
389 CAGATTTCAGCCACC
* *
10380665 AGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCTAAATACTATATCTTATATTCGCTGAGCAGG
1 AGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGG
* * * * **
10380730 AGCGGAGCAGATCAATTTTTGATGAATATTATCTCCATGTATCGGCAATGGAGCATATTTCAGCC
66 AGCGGAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATC
* ** *
10380795 ACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGGCCTTATCTTCGCTGA
131 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGA
** * *
10380860 GCAGGAGTGAAGCAGGTCAAAATTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCATATTC
196 GCAGGAGTGAAGCAAATCAAAATTTGAAGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTC
*
10380925 CAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTC
261 CAATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTC
* * * *
10380990 ATTGAGCAGGAGTGAAGCAAATCAAATTTTGACAAGTCTTATCTCCATGTATCGGAAATGGAGTA
326 ACTGAGCAGGAGTGAAGCAAATCAAATTTTGACAAGTCTTACCTCCATGTATCAGAAATGGAGCA
10381055 GATTTCAGCCACC
391 GATTTCAGCCACC
* * * * * *
10381068 AGCCTTATTTTCACTAAGCAGGAGTGGAGCAGGCTATATACTAGACCTTATCTTCGCTGAGTAGG
1 AGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGG
* * * *
10381133 AGTGAAGCAGGTCAAATTTTGATGAATCTTATCTCCATGTATCGGCATTGGAGCAGATTCCAATC
66 AGCGGAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATC
* * *
10381198 ATCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAACATACCAGATCTTTTCTTTACTGA
131 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGA
10381263 GCAGGAGT
196 GCAGGAGT
10381271 AAAACAGATC
Statistics
Matches: 544, Mismatches: 59, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
402 14 0.03
403 530 0.97
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (403 bp):
AGCCTTATCTTCACTGAGCAGAAGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGG
AGCGGAGCAGATCAAATTTTGATGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATC
ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCACTGA
GCAGGAGTGAAGCAAATCAAAATTTGAAGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTC
CAATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTC
ACTGAGCAGGAGTGAAGCAAATCAAATTTTGACAAGTCTTACCTCCATGTATCAGAAATGGAGCA
GATTTCAGCCACC
Found at i:10381536 original size:29 final size:29
Alignment explanation
Indices: 10381498--10381564 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
10381488 CCAAATTAAA
10381498 CACCCCACTAAACCGAT-CACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
10381527 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
10381556 CACCTCCAC
1 CACC-CCAC
10381565 ACCCTACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 28 0.85
30 3 0.09
ACGTcount: A:0.31, C:0.49, G:0.01, T:0.18
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:10381577 original size:37 final size:37
Alignment explanation
Indices: 10381521--10381601 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
10381511 CGATCACTAA
10381521 CTCCATCACCCTACTAAACCATCCACTACCTCCATCAC
1 CTCCA-CACCCTACTAAACCATCCACTACCTCCATCAC
*
10381559 CTCCACACCCTACTAAACCGTCCACTACCTCCATCAC
1 CTCCACACCCTACTAAACCATCCACTACCTCCATCAC
*
10381596 CCCCAC
1 CTCCAC
10381602 TACCTCCATC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 36 0.88
38 5 0.12
ACGTcount: A:0.27, C:0.53, G:0.01, T:0.19
Consensus pattern (37 bp):
CTCCACACCCTACTAAACCATCCACTACCTCCATCAC
Found at i:10381603 original size:18 final size:18
Alignment explanation
Indices: 10381580--10381615 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
10381570 ACTAAACCGT
10381580 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
10381598 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
10381616 TACTTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.61, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:10381716 original size:12 final size:12
Alignment explanation
Indices: 10381674--10381723 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
10381664 ATTGTATGGG
*
10381674 GAGGATTTTGGA
1 GAGGATTTTTGA
10381686 GAGGA-TTTTGA
1 GAGGATTTTTGA
10381697 GAGGATTTTTG-
1 GAGGATTTTTGA
*
10381708 GAGGAATTTTTTA
1 GAGG-ATTTTTGA
10381721 GAG
1 GAG
10381724 AATACATGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 14 0.42
12 16 0.48
13 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (12 bp):
GAGGATTTTTGA
Found at i:10381723 original size:24 final size:23
Alignment explanation
Indices: 10381674--10381717 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10381664 ATTGTATGGG
*
10381674 GAGGATTTTGGAGAGGATTTTGA
1 GAGGATTTTGGAGAGAATTTTGA
10381697 GAGGATTTTTGGAG-GAATTTT
1 GAGGA-TTTTGGAGAGAATTTT
10381718 TTAGAGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (23 bp):
GAGGATTTTGGAGAGAATTTTGA
Found at i:10382005 original size:20 final size:21
Alignment explanation
Indices: 10381972--10382010 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
10381962 CTTTATTCTC
*
10381972 ATTATTTTTATATTTATTTTT
1 ATTATTTTTATATTAATTTTT
*
10381993 ATTA-TTTTCTATTAATTT
1 ATTATTTTTATATTAATTT
10382011 AATTAATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
ATTATTTTTATATTAATTTTT
Found at i:10382013 original size:61 final size:62
Alignment explanation
Indices: 10381944--10382060 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 62
10381934 TGCTTTACTG
10381944 TTAATTAATTAATTTGAGCTTTAT-TCTCATTATT-TT-TA-TATTTATTT-TTATTATTTTCTA
1 TTAATTAATTAATTTGAG--TTATGTCTCA-TATTATTATATTATTTATTTATTATTATTTTCTA
*
10382004 TTAATTTAATTAATTTGAGTTATGTTTCATATTATTATATTATTTATTTATTATTAT
1 TTAA-TTAATTAATTTGAGTTATGTCTCATATTATTATATTATTTATTTATTATTAT
10382061 ATATTTATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
59 8 0.16
60 10 0.20
61 16 0.32
62 9 0.18
63 7 0.14
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (62 bp):
TTAATTAATTAATTTGAGTTATGTCTCATATTATTATATTATTTATTTATTATTATTTTCTA
Found at i:10382057 original size:19 final size:18
Alignment explanation
Indices: 10382033--10382069 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
10382023 TTATGTTTCA
10382033 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
10382052 TATTATTATATATTTATT
1 TATTATTATATATTTATT
10382070 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:10382081 original size:17 final size:14
Alignment explanation
Indices: 10382041--10382071 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10382031 CATATTATTA
*
10382041 TATTATTTATTTAT
1 TATTATATATTTAT
10382055 TATTATATATTTAT
1 TATTATATATTTAT
10382069 TAT
1 TAT
10382072 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:10382298 original size:21 final size:21
Alignment explanation
Indices: 10382274--10382315 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10382264 CTATATTTAA
*
10382274 TGTTATCGTCAACATATTTTT
1 TGTTATCATCAACATATTTTT
* *
10382295 TGTTATTATCATCATATTTTT
1 TGTTATCATCAACATATTTTT
10382316 AATATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.57
Consensus pattern (21 bp):
TGTTATCATCAACATATTTTT
Found at i:10382760 original size:126 final size:126
Alignment explanation
Indices: 10382530--10382773 Score: 425
Period size: 126 Copynumber: 1.9 Consensus size: 126
10382520 CATTGATCTT
* * *
10382530 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAATAATCGTGCCCTA
1 CTCTAAAAAAATTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
* *
10382595 TCGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTACCAGTTCA
66 ACGTACTGGATTTCGCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTACCAGTTCA
10382656 CTCTAAAAAAATTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAAATTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
* *
10382721 ACGTACTGGATTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGATTTCGCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTA
10382774 AGGCAAAAAC
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 111 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (126 bp):
CTCTAAAAAAATTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACGTACTGGATTTCGCTTTCTTTGTTTGTCTTGAATATTCAAATATCCTCTTACCAGTTCA
Found at i:10383610 original size:42 final size:42
Alignment explanation
Indices: 10383524--10383673 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 42
10383514 GTCAATGTCT
* *
10383524 CAGATGTGGTCTTACA-TATAATCAAATATCGATGCC-ACTGTCC
1 CAGACGTGGTCTTACACGA-AATCAAATA-CGATGCCAAC-GTCC
*
10383567 CAGACG-GGTTTTTACACGAAATCAAATACGATGCCAACGTCC
1 CAGACGTGG-TCTTACACGAAATCAAATACGATGCCAACGTCC
* *
10383609 CAAACGTGGTCTTACACGTAAATCATAAGT-CGATGCCAATGTCC
1 CAGACGTGGTCTTACACG-AAATCA-AA-TACGATGCCAACGTCC
10383653 CAGACGTGGTCTTACACGAAA
1 CAGACGTGGTCTTACACGAAA
10383674 ACACATATCG
Statistics
Matches: 93, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
42 26 0.28
43 33 0.35
44 33 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
CAGACGTGGTCTTACACGAAATCAAATACGATGCCAACGTCC
Found at i:10383653 original size:44 final size:41
Alignment explanation
Indices: 10383516--10383673 Score: 167
Period size: 44 Copynumber: 3.7 Consensus size: 41
10383506 CGTACAATGT
* * *
10383516 CAATGTCTCAGATGTGGTCTTACA-TATAATCAAATATCGATGC
1 CAATGTCCCAGACGTGGTCTTACACGA-AATC-AA-ATCGATGC
* *
10383559 CACTGTCCCAGACG-GGTTTTTACACGAAATCAAATACGATGC
1 CAATGTCCCAGACGTGG-TCTTACACGAAATCAAAT-CGATGC
* *
10383601 CAACGTCCCAAACGTGGTCTTACACGTAAATCATAAGTCGATGC
1 CAATGTCCCAGACGTGGTCTTACACG-AAATCA-AA-TCGATGC
10383645 CAATGTCCCAGACGTGGTCTTACACGAAA
1 CAATGTCCCAGACGTGGTCTTACACGAAA
10383674 ACACATATCG
Statistics
Matches: 97, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 32 0.33
44 33 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (41 bp):
CAATGTCCCAGACGTGGTCTTACACGAAATCAAATCGATGC
Found at i:10384104 original size:17 final size:18
Alignment explanation
Indices: 10384082--10384117 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
10384072 TTTAGTTTTT
10384082 AATTCACAAAAT-CACAA
1 AATTCACAAAATACACAA
10384099 AATTCACAAAATACACAA
1 AATTCACAAAATACACAA
10384117 A
1 A
10384118 TTTCTTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.61, C:0.22, G:0.00, T:0.17
Consensus pattern (18 bp):
AATTCACAAAATACACAA
Found at i:10384107 original size:9 final size:9
Alignment explanation
Indices: 10384082--10384117 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
10384072 TTTAGTTTTT
10384082 AATTCACAA
1 AATTCACAA
10384091 AA-TCACAA
1 AATTCACAA
10384099 AATTCACAA
1 AATTCACAA
*
10384108 AATACACAA
1 AATTCACAA
10384117 A
1 A
10384118 TTTCTTTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.61, C:0.22, G:0.00, T:0.17
Consensus pattern (9 bp):
AATTCACAA
Found at i:10395601 original size:12 final size:12
Alignment explanation
Indices: 10395580--10395610 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10395570 GTAAAAAAAA
10395580 CGGTGCGCCCAC
1 CGGTGCGCCCAC
*
10395592 CGGTGTGCCCAC
1 CGGTGCGCCCAC
10395604 CGGTGCG
1 CGGTGCG
10395611 GTACTGACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.42, G:0.39, T:0.13
Consensus pattern (12 bp):
CGGTGCGCCCAC
Found at i:10399855 original size:21 final size:21
Alignment explanation
Indices: 10399829--10399870 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
10399819 ACTTTACTTA
10399829 TGGGTAATATGATTGTAACTC
1 TGGGTAATATGATTGTAACTC
10399850 TGGGTAATATGATTGTAACTC
1 TGGGTAATATGATTGTAACTC
10399871 AAGTTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.38
Consensus pattern (21 bp):
TGGGTAATATGATTGTAACTC
Found at i:10399977 original size:55 final size:57
Alignment explanation
Indices: 10399850--10399995 Score: 260
Period size: 55 Copynumber: 2.6 Consensus size: 57
10399840 ATTGTAACTC
10399850 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
* *
10399907 TGGGTAATATGATTGTAACTCACGTTGGAATGTTATCC-TCT-TAGAACTTTATTTA
1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
10399962 TGGGTAATATGATTGTAACTCAAGTTGGAATGTT
1 TGGGTAATATGATTGTAACTCAAGTTGGAATGTT
10399996 GTCAGCCAGT
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
55 46 0.53
56 3 0.03
57 37 0.43
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (57 bp):
TGGGTAATATGATTGTAACTCAAGTTGGAATGTTATCCTTCTCTAGAACTTTACTTA
Found at i:10405153 original size:29 final size:29
Alignment explanation
Indices: 10405121--10405180 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
10405111 GGTTTGGTGG
*
10405121 TGGGTATATTTTTATTTTAATCATTTTCA
1 TGGGTACATTTTTATTTTAATCATTTTCA
10405150 TGGGTACATTTTTATTTTAATCATTTTCA
1 TGGGTACATTTTTATTTTAATCATTTTCA
10405179 TG
1 TG
10405181 CCCTTTCTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.57
Consensus pattern (29 bp):
TGGGTACATTTTTATTTTAATCATTTTCA
Found at i:10409180 original size:46 final size:44
Alignment explanation
Indices: 10409039--10409538 Score: 293
Period size: 41 Copynumber: 11.7 Consensus size: 44
10409029 TTTTAACCCA
* *
10409039 CTCCACTGTAACTTCAGGGAGATAGGAT-AG-TGTCTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGAT-TCTTCGATCTG
* * * *
10409082 CTCCGCTGTAA-TCTC-GGGAGATAAGATCT-CTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGAT-TCTTCGATCTG
* * *
10409125 CTCCACTGTAACTTCAGGGGGATAAGATCTGCAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG--ATTCTTCGATCTG
* * * *
10409171 CTCCACTGTAA-TCTCAGAGAGATAAGACCTGA---TGCGATCTA
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGATTCTTCGATCTG
* * * * *
10409212 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATT-TT-AATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-C-TGATTCTTCGATCTG
*
10409256 CTCCACTGTAACTTCAGGGAGATAGGAT-T-ATATCTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGAT-TCTTCGATCTG
* * * *
10409299 CTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG--ATTCTTCGATCTG
* * *
10409345 TTCCACTGTAA-TCTCAGGGAGATAAGATCTGA-T-GT-GATCTT
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGATTCTTCGATCTG
* * ** *
10409386 CTCTACTGTAACTTCAGAGAGATAAGATC-----CTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGATTCTTCGATCTG
* * * *
10409425 CTCCATTGTAA-TCTCAAGGAGATAGGAT-T-ACTATCTTTGATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGA-T-TCTTCGATCTG
* * *
10409469 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTGA-T-GT-GATCTT
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGATTCTTCGATCTG
* *
10409510 CTCTACTGTAACTTCAGAGAGATAAGATC
1 CTCCACTGTAACTTCAGGGAGATAAGATC
10409539 CTTTAATCCG
Statistics
Matches: 358, Mismatches: 64, Indels: 72
0.72 0.13 0.15
Matches are distributed among these distances:
38 2 0.01
39 24 0.07
40 2 0.01
41 90 0.25
42 20 0.06
43 67 0.19
44 77 0.22
45 3 0.01
46 70 0.20
47 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTGATTCTTCGATCTG
Found at i:10409236 original size:87 final size:88
Alignment explanation
Indices: 10409039--10409414 Score: 308
Period size: 87 Copynumber: 4.3 Consensus size: 88
10409029 TTTTAACCCA
* * * *
10409039 CTCCACTGTAACTTCAGGGAGATAGGA--T--AGTGTCTTCGATCTGCTCCGCTGTAATCTC-GG
1 CTCCACTGTAACTTCAGAGAGATAAGATCTGCAAT-TCTTCGATCTGCTCCACTGTAATCTCAGG
* * * *
10409099 GAGATAAGATCTCTGGCTTCAATCTG
65 GAGATAAGA-C-CTAGATGCGATCTG
* * * * *
10409125 CTCCACTGTAACTTCAGGGGGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAATCTCAGAG
1 CTCCACTGTAACTTCAGAGAGATAAGATCTGCAATTCTTCGATCTGCTCCACTGTAATCTCAGGG
*
10409190 AGATAAGACCT-GATGCGATCTA
66 AGATAAGACCTAGATGCGATCTG
* ** * *
10409212 CTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAA-CTTCAG
1 CTCCACTGTAACTTCAGAGAGATAAGAT-CTGCAATTCTTCGATCTGCTCCACTGTAATC-TCAG
* * * *
10409273 GGAGATAGGA-TTATATCTTCGATCTG
64 GGAGATAAGACCTAGA--TGCGATCTG
* * * * * *
10409299 CTCCGCTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTCTGTTCCACTGTAATCTCAGGG
1 CTCCACTGTAACTTCAGAGAGATAAGATCTGCAATTCTTCGATCTGCTCCACTGTAATCTCAGGG
* * *
10409364 AGATAAGATCT-GATGTGATCTT
66 AGATAAGACCTAGATGCGATCTG
*
10409386 CTCTACTGTAACTTCAGAGAGATAAGATC
1 CTCCACTGTAACTTCAGAGAGATAAGATC
10409415 CTTTAATCCG
Statistics
Matches: 227, Mismatches: 48, Indels: 29
0.75 0.16 0.10
Matches are distributed among these distances:
84 2 0.01
85 26 0.11
86 29 0.13
87 98 0.43
88 7 0.03
89 51 0.22
90 14 0.06
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (88 bp):
CTCCACTGTAACTTCAGAGAGATAAGATCTGCAATTCTTCGATCTGCTCCACTGTAATCTCAGGG
AGATAAGACCTAGATGCGATCTG
Found at i:10409278 original size:44 final size:43
Alignment explanation
Indices: 10409000--10409622 Score: 249
Period size: 44 Copynumber: 14.6 Consensus size: 43
10408990 ACCTACTCTG
* * * * **
10409000 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAACCCACTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTTATTTTGATCTGCTCCA
* * * * * *
10409044 CTGTAACTTCAGGGAGATAGGATAGTGT-CTTCGATCTGCTCCG
1 CTGTAACTTCAGGGAGATAAGAT-CTTTATTTTGATCTGCTCCA
*** **
10409087 CTGTAA-TCTC-GGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACT-TCAGGGAGATAAGATCT-TTATTTTGATCTGCTCCA
* ** * *
10409130 CTGTAACTTCAGGGGGATAAGATCTGCAATTCTTCGGTCTACTCCA
1 CTGTAACTTCAGGGAGATAAGATCT-TTATT-TT-GATCTGCTCCA
* * * ** * *
10409176 CTGTAA-TCTCAGAGAGATAAGA-CCTGA-TGCGATCTACTCTA
1 CTGTAACT-TCAGGGAGATAAGATCTTTATTTTGATCTGCTCCA
* * *
10409217 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTTATTTTGATCTGCTCCA
* * * *
10409261 CTGTAACTTCAGGGAGATAGGAT-TATATCTTCGATCTGCTCCG
1 CTGTAACTTCAGGGAGATAAGATCTTTAT-TTTGATCTGCTCCA
* * ** * *
10409304 CTGTAACCTCAGGGAGACAAGATCTGCAATTCTTCGGTCTGTTCCA
1 CTGTAACTTCAGGGAGATAAGATCT-TTATT-TT-GATCTGCTCCA
* * * *
10409350 CTGTAA-TCTCAGGGAGATAAGATC-TGA-TGTGATCTTCTCTA
1 CTGTAACT-TCAGGGAGATAAGATCTTTATTTTGATCTGCTCCA
* *
10409391 CTGTAACTTCAGAGAGATAAGATCCTTTA-----ATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTTATTTTGATCTGCTCCA
* * * * *
10409430 TTGTAA-TCTCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCG
1 CTGTAACT-TCAGGGAGATAAGATCT-TTAT-TTTGATCTGCTCCA
* * * *
10409474 CTGTAA-TCTCAGGGAGATAAGATC-TGA-TGTGATCTTCTCTA
1 CTGTAACT-TCAGGGAGATAAGATCTTTATTTTGATCTGCTCCA
* *
10409515 CTGTAACTTCAGAGAGATAAGATCCTTTA-----ATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTTATTTTGATCTGCTCCA
* * * * * *
10409554 TTGTAA-TCTCAAGGAGATAGGAT-TACTATCTTTGATCCGCTCCG
1 CTGTAACT-TCAGGGAGATAAGATCT-TTAT-TTTGATCTGCTCCA
10409598 CTGTAA-TCTCAGGGAGATAAGATCT
1 CTGTAACT-TCAGGGAGATAAGATCT
10409623 GAAATTTTTT
Statistics
Matches: 431, Mismatches: 106, Indels: 83
0.70 0.17 0.13
Matches are distributed among these distances:
37 2 0.00
38 6 0.01
39 48 0.11
41 87 0.20
42 22 0.05
43 77 0.18
44 127 0.29
45 7 0.02
46 55 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (43 bp):
CTGTAACTTCAGGGAGATAAGATCTTTATTTTGATCTGCTCCA
Found at i:10409310 original size:174 final size:170
Alignment explanation
Indices: 10409081--10409499 Score: 560
Period size: 174 Copynumber: 2.4 Consensus size: 170
10409071 TCTTCGATCT
* * * ** * *
10409081 GCTCCGCTGTAATCTC-GGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACTTCAGGG
1 GCTCCACTGTAATCTCAAGGAGATAGGAT-TACTATCTTCGATCTGCTCCGCTGTAACTTCAGGG
*
10409144 GGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGAT
65 AGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGAT
10409209 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCC
130 CTACTCTACTGTAACTTCAGAGAGATAAGATCC-----TTTAATCC
* *
10409255 GCTCCACTGTAA-CTTCAGGGAGATAGGATTA-TATCTTCGATCTGCTCCGCTGTAACCTCAGGG
1 GCTCCACTGTAATC-TCAAGGAGATAGGATTACTATCTTCGATCTGCTCCGCTGTAACTTCAGGG
* ** * * *
10409318 AGACAAGATCTGCAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGATGTGAT
65 AGATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGAT
*
10409383 CTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
130 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
* *
10409424 GCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAA-TCTCAGGG
1 GCTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCGATCTGCTCCGCTGTAACT-TCAGGG
10409488 AGATAAGATCTG
65 AGATAAGATCTG
10409500 ATGTGATCTT
Statistics
Matches: 219, Mismatches: 20, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
169 35 0.16
170 41 0.19
173 1 0.00
174 131 0.60
175 11 0.05
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (170 bp):
GCTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCGATCTGCTCCGCTGTAACTTCAGGGA
GATAAGATCTGCAATTCTTCGGTCTACTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCC
Found at i:10409492 original size:124 final size:124
Alignment explanation
Indices: 10409341--10409624 Score: 541
Period size: 124 Copynumber: 2.3 Consensus size: 124
10409331 AATTCTTCGG
* *
10409341 TCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGATGTGATCTTCTCTACTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATGTGATCTTCTCTACTGTAACTTCAGAGA
10409406 GATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGA
66 GATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGA
10409465 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATGTGATCTTCTCTACTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATGTGATCTTCTCTACTGTAACTTCAGAGA
10409530 GATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGA
66 GATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGA
*
10409589 TCCGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
10409625 AATTTTTTTT
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 157 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (124 bp):
TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATGTGATCTTCTCTACTGTAACTTCAGAGA
GATAAGATCCTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGA
Found at i:10442010 original size:46 final size:46
Alignment explanation
Indices: 10441927--10442081 Score: 184
Period size: 47 Copynumber: 3.3 Consensus size: 46
10441917 TTGCACATAG
* * **
10441927 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGGA
1 TCACATATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGGA
* *
10441975 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GGA
* *
10442022 GCACATATCACACCGATGCCATATCCCGGATATGGTCTTATACGGAAA
1 TCACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGG--A
*
10442070 TCACATTTCACA
1 TCACATATCACA
10442082 TGCTGCCATG
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 28 0.30
47 42 0.46
48 22 0.24
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (46 bp):
TCACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGGA
Done.