Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 279 of 318
Found at i:89208306 original size:30 final size:30
Alignment explanation
Indices: 89208270--89208328 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
89208260 CTTAACAAGC
89208270 AAATGTCTCTAAAATAATAACAAAATTAAT
1 AAATGTCTCTAAAATAATAACAAAATTAAT
*
89208300 AAATGTCTTTAAAATAATAACAAAATTAA
1 AAATGTCTCTAAAATAATAACAAAATTAA
89208329 CAATCAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAT
Found at i:89209609 original size:24 final size:23
Alignment explanation
Indices: 89209589--89209633 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
89209579 TTTTTTTGTA
89209589 TTTATATATTCAATTACTTTTAGT
1 TTTATATATTCAATTA-TTTTAGT
* *
89209613 TTTATTTATTTAATTATTTTA
1 TTTATATATTCAATTATTTTA
89209634 TTAGTTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTATATATTCAATTATTTTAGT
Found at i:89209876 original size:28 final size:26
Alignment explanation
Indices: 89209815--89209886 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 26
89209805 AATATTTAAT
89209815 AATTTAGGTACCAAATTGAACTAAAA
1 AATTTAGGTACCAAATTGAACTAAAA
**
89209841 AATCTTAGGTACCAAATTGGGCCTAAAGA
1 AAT-TTAGGTACCAAATT-GAACTAAA-A
* *
89209870 AGTTTAGATACCAAATT
1 AATTTAGGTACCAAATT
89209887 AAAAAAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 3 0.08
27 14 0.36
28 19 0.49
29 3 0.08
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (26 bp):
AATTTAGGTACCAAATTGAACTAAAA
Found at i:89209940 original size:58 final size:59
Alignment explanation
Indices: 89209850--89209964 Score: 164
Period size: 58 Copynumber: 2.0 Consensus size: 59
89209840 AAATCTTAGG
*
89209850 TACCAAATTGGGCCTAAAGAAGTTTAGATACCAAATTA-AAAAAAATGTCAAGTTCAGA
1 TACCAAATTGGGCCTAAAAAAGTTTAGATACCAAATTAGAAAAAAATGTCAAGTTCAGA
* *
89209908 TACCAAATTGGG-CTAAAAAAGTTATA-AGTACCAAATTAGGAAAAATTGTCAAGTTCA
1 TACCAAATTGGGCCTAAAAAAGTT-TAGA-TACCAAATTAGAAAAAAATGTCAAGTTCA
89209965 TATAATGTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
57 11 0.22
58 24 0.47
59 16 0.31
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (59 bp):
TACCAAATTGGGCCTAAAAAAGTTTAGATACCAAATTAGAAAAAAATGTCAAGTTCAGA
Found at i:89212379 original size:17 final size:17
Alignment explanation
Indices: 89212310--89212388 Score: 56
Period size: 17 Copynumber: 4.5 Consensus size: 17
89212300 AGATGACTAT
*
89212310 ATAAAAAA-ATTTAATAA
1 ATAAAAAATATTTTA-AA
*
89212327 ATAGAAAAATA-TATAAA
1 ATA-AAAAATATTTTAAA
* *
89212344 ATTATAAATATTAAATTAAA
1 ATAAAAAATATT---TTAAA
89212364 ATAAAAAATATTTTAAA
1 ATAAAAAATATTTTAAA
89212381 A-AAAAAAT
1 ATAAAAAAT
89212389 TAATATGAGC
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
16 13 0.27
17 14 0.29
18 7 0.14
19 1 0.02
20 14 0.29
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (17 bp):
ATAAAAAATATTTTAAA
Found at i:89217687 original size:39 final size:40
Alignment explanation
Indices: 89217644--89217720 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 40
89217634 AAGAGTGTTG
* *
89217644 CTAATGCTCAACATTTAGCGGTTTTTTACCA-TAGCGCCA
1 CTAATGCTCAACATTTAGCAGTGTTTTACCAGTAGCGCCA
* ** *
89217683 CTAATGTTTGACATTTAGCAGTGTTTTCCCAGTAGCGC
1 CTAATGCTCAACATTTAGCAGTGTTTTACCAGTAGCGC
89217721 TGCTAACATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
39 25 0.81
40 6 0.19
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (40 bp):
CTAATGCTCAACATTTAGCAGTGTTTTACCAGTAGCGCCA
Found at i:89217812 original size:163 final size:159
Alignment explanation
Indices: 89217507--89217825 Score: 408
Period size: 163 Copynumber: 2.0 Consensus size: 159
89217497 TTTTGCGGCA
*
89217507 TTTTTACAATAGCGCCACTAATGATTAACATTTAGCAGTTTACCCAATAGCACCTCTAATGATTT
1 TTTTTACAATAGCGCCACTAATGATTAACATTTAGCAGTTTACCCAATAGCACCTCTAATCATTT
* * *
89217572 TACGCCTTTTGATAAACGACGTCATCTAGCTTACTGCCCATATTTACTTGCGGCATTTTCCCAAG
66 TACGCCTTTTGATAAACGACGTCATCAAGCTTAATGCCCATATATACTTGCGGCATTTTCCCAAG
* *
89217637 AGTGTTGCTAATGCTCAACATTTAGCGGT
131 ACTGTCGCTAATGCTCAACATTTAGCGGT
* * * * * *
89217666 TTTTTACCATAGCGCCACTAATGTTTGACATTTAGCAGTGTTTTCCCAGTAGC-GCTGCTAA-CA
1 TTTTTACAATAGCGCCACTAATGATTAACATTTAGCA--GTTTACCCAATAGCACCT-CTAATCA
* * * *
89217729 TTTTTGCGCCTTTTTGATAAAACGACGTCGTCAAGCTTAATGCCCATATATATTTGCGGTATTTT
63 -TTTTACGCC-TTTTGAT-AAACGACGTCATCAAGCTTAATGCCCATATATACTTGCGGCATTTT
* *
89217794 CCCAATACTGTCGCTAATGCTCGACATTTAGC
125 CCCAAGACTGTCGCTAATGCTCAACATTTAGC
89217826 AACGCTTTAC
Statistics
Matches: 136, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
159 34 0.25
160 3 0.02
161 24 0.18
162 7 0.05
163 68 0.50
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (159 bp):
TTTTTACAATAGCGCCACTAATGATTAACATTTAGCAGTTTACCCAATAGCACCTCTAATCATTT
TACGCCTTTTGATAAACGACGTCATCAAGCTTAATGCCCATATATACTTGCGGCATTTTCCCAAG
ACTGTCGCTAATGCTCAACATTTAGCGGT
Found at i:89218602 original size:22 final size:22
Alignment explanation
Indices: 89218577--89218650 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
89218567 GAATTTTTTT
89218577 GGGTTTAGGGTTTTAGGATTTA
1 GGGTTTAGGGTTTTAGGATTTA
* * **
89218599 GGGTTTATGTTTTTAAAATTTA
1 GGGTTTAGGGTTTTAGGATTTA
** *
89218621 AAGTTTAGGG-TTTAGGAATTA
1 GGGTTTAGGGTTTTAGGATTTA
89218642 GGGGTTTAG
1 -GGGTTTAG
89218651 AGAAAGCCAT
Statistics
Matches: 38, Mismatches: 13, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
21 8 0.21
22 30 0.79
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (22 bp):
GGGTTTAGGGTTTTAGGATTTA
Found at i:89218975 original size:40 final size:40
Alignment explanation
Indices: 89218912--89219076 Score: 140
Period size: 40 Copynumber: 4.1 Consensus size: 40
89218902 CGAAAATGGC
* **
89218912 TGCTCAACTTTTTGCGGTATTTGGACCAAAAACGCCGCTAT
1 TGCTCAAC-TTTTGTGGCGTTTGGACCAAAAACGCCGCTAT
* ** *
89218953 TGATCAACTTTTGTGGCGTTTGGATTAAAAAC-ACGCTAT
1 TGCTCAACTTTTGTGGCGTTTGGACCAAAAACGCCGCTAT
* * *
89218992 TGCT-AAGTTTT-TAGCTGCGTTTGTACC-AAAACGCTGCTAT
1 TGCTCAACTTTTGT-G--GCGTTTGGACCAAAAACGCCGCTAT
** *
89219032 TGCTCAGTTTTTAGTTGCGTTTGGACCAAAAACGCCGCTAT
1 TGCTCAACTTTT-GTGGCGTTTGGACCAAAAACGCCGCTAT
89219073 TGCT
1 TGCT
89219077 GAGTTTTTAC
Statistics
Matches: 97, Mismatches: 19, Indels: 16
0.73 0.14 0.12
Matches are distributed among these distances:
37 1 0.01
38 7 0.07
39 14 0.14
40 46 0.47
41 28 0.29
43 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (40 bp):
TGCTCAACTTTTGTGGCGTTTGGACCAAAAACGCCGCTAT
Found at i:89219076 original size:41 final size:41
Alignment explanation
Indices: 89218931--89219085 Score: 181
Period size: 40 Copynumber: 3.9 Consensus size: 41
89218921 TTTTGCGGTA
* ** *
89218931 TTTGGACCAAAAACGCCGCTATTGATCAACTTTT-GTGGCG
1 TTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTTGCG
** * * *
89218971 TTTGGATTAAAAAC-ACGCTATTGCTAAGTTTTTAGCTGCG
1 TTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTTGCG
* *
89219011 TTTGTACC-AAAACGCTGCTATTGCTCAGTTTTTAGTTGCG
1 TTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTTGCG
*
89219051 TTTGGACCAAAAACGCCGCTATTGCTGAGTTTTTA
1 TTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTA
89219086 CAGTGTTTTC
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
39 19 0.20
40 50 0.54
41 24 0.26
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (41 bp):
TTTGGACCAAAAACGCCGCTATTGCTCAGTTTTTAGTTGCG
Found at i:89220760 original size:12 final size:11
Alignment explanation
Indices: 89220732--89220786 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
89220722 ATATTCTATT
89220732 AATTTAATA-A
1 AATTTAATATA
*
89220742 GATTTAATATTA
1 AATTTAATA-TA
89220754 AATTTAATATA
1 AATTTAATATA
89220765 AATATTAGA-ATA
1 AAT-TTA-ATATA
*
89220777 AATTCAATAT
1 AATTTAATAT
89220787 TAAAGTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 9 0.24
11 9 0.24
12 18 0.49
13 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (11 bp):
AATTTAATATA
Found at i:89241551 original size:2 final size:2
Alignment explanation
Indices: 89241544--89241574 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
89241534 ACTAAAGTTT
89241544 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
89241575 TATATCATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:89245448 original size:31 final size:31
Alignment explanation
Indices: 89245410--89245472 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
89245400 ATGGGTAAAA
* * *
89245410 TATATAAATGGTCATCCGTCTATGTTTGCAT
1 TATATAAATGGCCATCCATCTATGTCTGCAT
89245441 TATATAAATGGCCATCCATCTATGTCTGCAT
1 TATATAAATGGCCATCCATCTATGTCTGCAT
89245472 T
1 T
89245473 CTTGTTTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (31 bp):
TATATAAATGGCCATCCATCTATGTCTGCAT
Found at i:89246849 original size:21 final size:21
Alignment explanation
Indices: 89246825--89246865 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
89246815 TGCATATATA
89246825 TATTAGTATATATATTAATTT
1 TATTAGTATATATATTAATTT
*
89246846 TATTAGTATATGTATTAATT
1 TATTAGTATATATATTAATT
89246866 GAACAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (21 bp):
TATTAGTATATATATTAATTT
Found at i:89247788 original size:16 final size:16
Alignment explanation
Indices: 89247767--89247818 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
89247757 TTTGGTTCGC
89247767 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
89247783 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
89247799 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
89247815 TGTA
1 TGTA
89247819 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:89247904 original size:39 final size:43
Alignment explanation
Indices: 89247799--89247908 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
89247789 GGATTAGAGG
89247799 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * * ***
89247844 TGTAATGGAATATAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
89247884 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
89247909 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 19 0.35
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.40
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:89247985 original size:16 final size:16
Alignment explanation
Indices: 89247961--89247998 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
89247951 TTTGGTTCGC
* *
89247961 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
89247977 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
89247993 TGTAAT
1 TGTAAT
89247999 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:89248043 original size:45 final size:44
Alignment explanation
Indices: 89247977--89248067 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
89247967 GGATTAGAGG
*
89247977 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* * ***
89248022 TGTAATGGAATATAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
89248066 TG
1 TG
89248068 GAATAGGGGC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:89248084 original size:178 final size:178
Alignment explanation
Indices: 89247783--89248122 Score: 662
Period size: 178 Copynumber: 1.9 Consensus size: 178
89247773 GGATTAGAGG
89247783 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGTA
1 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGTA
*
89247848 ATGGAATATAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATAGAGGTGTAATAGCATAAT
66 ATGGAATATAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATAGAGGCGTAATAGCATAAT
89247913 GGAAAAAACTAAAATGACTAGAATACCCTTAGGGCACGTTTGGTTCGC
131 GGAAAAAACTAAAATGACTAGAATACCCTTAGGGCACGTTTGGTTCGC
89247961 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGTA
1 TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGTA
*
89248026 ATGGAATATAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATAGGGGCGTAATAGCATAAT
66 ATGGAATATAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATAGAGGCGTAATAGCATAAT
89248091 GGAAAAAACTAAAATGACTAGAATACCCTTAG
131 GGAAAAAACTAAAATGACTAGAATACCCTTAG
89248123 CATAAATTTA
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
178 160 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (178 bp):
TGTATTGGATTAGAGGTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGTA
ATGGAATATAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATAGAGGCGTAATAGCATAAT
GGAAAAAACTAAAATGACTAGAATACCCTTAGGGCACGTTTGGTTCGC
Found at i:89248253 original size:18 final size:17
Alignment explanation
Indices: 89248232--89248266 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
89248222 TTATTATTAA
*
89248232 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
89248250 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
89248267 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:89248350 original size:120 final size:120
Alignment explanation
Indices: 89248210--89248737 Score: 884
Period size: 120 Copynumber: 4.4 Consensus size: 120
89248200 ATTTAATCAT
* *
89248210 ATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA
* * * * * * *
89248275 ATCAATATTTTTATCTGAATTTACTAAAATAATAATATATGATACTATAAAATATA
65 TTAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
*
89248331 TTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
**
89248396 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
89248451 ATTTAACAT-A--ATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
*
89248513 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
*
89248568 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATAT-ATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
89248632 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
*
89248687 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
1 ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
89248738 CTAAAGTTTG
Statistics
Matches: 387, Mismatches: 16, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
117 112 0.29
118 1 0.00
119 119 0.31
120 152 0.39
121 3 0.01
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATA
Found at i:89248622 original size:16 final size:16
Alignment explanation
Indices: 89248587--89248621 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
89248577 AATTATTATT
89248587 AAATATAATTTAATAA
1 AAATATAATTTAATAA
89248603 AAATATATATTTAATAA
1 AAATATA-ATTTAATAA
89248620 AA
1 AA
89248622 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:89266056 original size:26 final size:26
Alignment explanation
Indices: 89266025--89266132 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
89266015 TGAAATTCCC
* *
89266025 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
89266051 ATCATGGAACATTTAGCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
89266077 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
89266103 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
89266129 ATCA
1 ATCA
89266133 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:89266484 original size:14 final size:16
Alignment explanation
Indices: 89266465--89266505 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
89266455 GGGGCGTTAC
89266465 AATTTTATATT-A-AT
1 AATTTTATATTAACAT
* *
89266479 ATTTTTTTATTAACAT
1 AATTTTATATTAACAT
89266495 AATTTTATATT
1 AATTTTATATT
89266506 CAAGATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 11 0.52
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
AATTTTATATTAACAT
Found at i:89266574 original size:13 final size:13
Alignment explanation
Indices: 89266540--89266574 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
89266530 ATAAAATAAT
*
89266540 TATAATTATTTTA
1 TATATTTATTTTA
89266553 TATTATTTATTTTA
1 TA-TATTTATTTTA
89266567 TATATTTA
1 TATATTTA
89266575 AAAAATATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATATTTATTTTA
Found at i:89266936 original size:17 final size:19
Alignment explanation
Indices: 89266914--89266957 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
89266904 AATCATTATC
*
89266914 ATATTTA-AAAT-AAAATT
1 ATATTTATAAATAAAAAGT
*
89266931 ATATTTATATATAAAAAGT
1 ATATTTATAAATAAAAAGT
89266950 ATATTTAT
1 ATATTTAT
89266958 TTAATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 3 0.13
19 13 0.57
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATATTTATAAATAAAAAGT
Found at i:89267747 original size:31 final size:31
Alignment explanation
Indices: 89267712--89267783 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
89267702 CTAACCTTTA
*
89267712 AAATTCAAAAAATATAAAGAA-TAAAATTAAC
1 AAATTTAAAAAATA-AAAGAACTAAAATTAAC
*
89267743 AAATTTAAAAAATAAATGAACTAAAATTAAC
1 AAATTTAAAAAATAAAAGAACTAAAATTAAC
*
89267774 CAATTTAAAA
1 AAATTTAAAA
89267784 TAGAGGGACT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 5 0.14
31 32 0.86
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (31 bp):
AAATTTAAAAAATAAAAGAACTAAAATTAAC
Found at i:89267751 original size:22 final size:23
Alignment explanation
Indices: 89267710--89267758 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
89267700 ATCTAACCTT
*
89267710 TAAAATTCAAAAAATATAAAGAA
1 TAAAATTCAAAAAATATAAAAAA
* *
89267733 TAAAATT-AACAAATTTAAAAAA
1 TAAAATTCAAAAAATATAAAAAA
89267755 TAAA
1 TAAA
89267759 TGAACTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (23 bp):
TAAAATTCAAAAAATATAAAAAA
Found at i:89267772 original size:22 final size:22
Alignment explanation
Indices: 89267720--89267772 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
89267710 TAAAATTCAA
* *
89267720 AAAATATAAAGAATAAAATTAAC
1 AAAAT-TAAAAAATAAAATGAAC
*
89267743 AAATTTAAAAAAT-AAATGAAC
1 AAAATTAAAAAATAAAATGAAC
89267764 TAAAATTAA
1 -AAAATTAA
89267773 CCAATTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 7 0.28
22 14 0.56
23 4 0.16
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAATTAAAAAATAAAATGAAC
Found at i:89275917 original size:22 final size:20
Alignment explanation
Indices: 89275891--89275945 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
89275881 ATTATCTATT
89275891 TATTTAATATCATTTTACTAA
1 TATTTAATATCATTTT-CTAA
* * * *
89275912 TAATTTAATCTAATTTTTTTA
1 T-ATTTAATATCATTTTCTAA
89275933 TATTTAATATCAT
1 TATTTAATATCAT
89275946 ACTTTTTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 10 0.37
21 4 0.15
22 13 0.48
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTTAATATCATTTTCTAA
Found at i:89276420 original size:12 final size:11
Alignment explanation
Indices: 89276393--89276419 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
89276383 AATTATTTAA
89276393 ATTTTAAAAAT
1 ATTTTAAAAAT
89276404 ATTTTAAAAAT
1 ATTTTAAAAAT
89276415 ATTTT
1 ATTTT
89276420 TTTATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:89291470 original size:15 final size:15
Alignment explanation
Indices: 89291413--89291473 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
89291403 AAAAATGTTA
*
89291413 AAAAATATTAAAAAT
1 AAAAATATTATAAAT
89291428 AAAAAT-TGGTATAAACTT
1 AAAAATAT--TATAAA--T
*
89291446 AAAAA-GTTATAAAT
1 AAAAATATTATAAAT
89291460 AAAAATATTATAAA
1 AAAAATATTATAAA
89291474 AATATAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
14 7 0.18
15 13 0.34
16 11 0.29
18 7 0.18
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (15 bp):
AAAAATATTATAAAT
Found at i:89291607 original size:38 final size:37
Alignment explanation
Indices: 89291543--89291627 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 37
89291533 ATTTAAAATT
* * *
89291543 TTATAAAAGCGCATTAAAAGTCTATAATAATCAT-AAAA
1 TTATAAAA-AGCATTAAAACTATATAA-AATCATGAAAA
* *
89291581 TTATAAAAAGCATTAAAACTGATATAAACTTATGAAAA
1 TTATAAAAAGCATTAAAACT-ATATAAAATCATGAAAA
89291619 TTATAAAAA
1 TTATAAAAA
89291628 ACAAATCATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
37 14 0.35
38 26 0.65
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.29
Consensus pattern (37 bp):
TTATAAAAAGCATTAAAACTATATAAAATCATGAAAA
Found at i:89291785 original size:17 final size:18
Alignment explanation
Indices: 89291754--89291787 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
89291744 GCTAAATCAA
*
89291754 TTTTTTATTTATTTAATT
1 TTTTTTACTTATTTAATT
89291772 TTTTTTACTT-TTTAAT
1 TTTTTTACTTATTTAAT
89291788 GTATTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTACTTATTTAATT
Found at i:89292112 original size:9 final size:9
Alignment explanation
Indices: 89292088--89292260 Score: 55
Period size: 9 Copynumber: 18.2 Consensus size: 9
89292078 TATAAGTTCA
*
89292088 TATTAATTT
1 TATTATTTT
*
89292097 TAATATTTT
1 TATTATTTT
89292106 TATTATTTTT
1 TATTA-TTTT
* *
89292116 TATAAATTT
1 TATTATTTT
*
89292125 TATAATTTT
1 TATTATTTT
89292134 ATAATTATTTTT
1 -T-ATTA-TTTT
* *
89292146 TAATAATTCT
1 T-ATTATTTT
*
89292156 AATATATTTT
1 TAT-TATTTT
89292166 T-TTAATTTT
1 TATT-ATTTT
* *
89292175 AAATATTTT
1 TATTATTTT
* *
89292184 AAATAATTTT
1 -TATTATTTT
*
89292194 TATTAATTT
1 TATTATTTT
*
89292203 TATAATTTGTT
1 TATTA-TT-TT
*
89292214 TATAATTTAT
1 TATTATTT-T
89292224 TA-TATTTT
1 TATTATTTT
* *
89292232 TATAATGTT
1 TATTATTTT
*
89292241 TATAAGTTTT
1 TATTA-TTTT
89292251 TA-TATTTT
1 TATTATTTT
89292259 TA
1 TA
89292261 ATAAGTTTAT
Statistics
Matches: 124, Mismatches: 27, Indels: 27
0.70 0.15 0.15
Matches are distributed among these distances:
8 10 0.08
9 60 0.48
10 35 0.28
11 15 0.12
12 4 0.03
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.64
Consensus pattern (9 bp):
TATTATTTT
Found at i:89292116 original size:19 final size:19
Alignment explanation
Indices: 89292094--89292320 Score: 75
Period size: 19 Copynumber: 11.7 Consensus size: 19
89292084 TTCATATTAA
*
89292094 TTTTAATATTTTTATTATT
1 TTTTAATATTTTTATAATT
*
89292113 TTTT-ATAAATTTTATAATT
1 TTTTAAT-ATTTTTATAATT
*
89292132 TTATAATTATTTTT-TAATAAT
1 TTTTAA-TATTTTTATAAT--T
* * *
89292153 TCTAATATATTTTTTTAA-T
1 TTTTA-ATATTTTTATAATT
* *
89292172 TTTAAATATTTTAAATAA-T
1 TTTTAATATTTT-TATAATT
* *
89292191 TTTTATTAATTTTATAATT
1 TTTTAATATTTTTATAATT
89292210 TGTTT-ATAATTTATTAT-A-T
1 T-TTTAAT-ATTT-TTATAATT
* *
89292229 TTTT-ATAATGTTTATAAGT
1 TTTTAAT-ATTTTTATAATT
89292248 TTTT-ATATTTTTAATAAGTT
1 TTTTAATATTTTT-ATAA-TT
* *
89292268 TATATAA-ATTTTAATATATAAT
1 T-TTTAATATTTT--TATA-ATT
*
89292290 TTTT-ATTTTTTTATAACTT
1 TTTTAATATTTTTATAA-TT
89292309 TTTT--TATTTTTA
1 TTTTAATATTTTTA
89292321 AATAATTTTC
Statistics
Matches: 160, Mismatches: 25, Indels: 47
0.69 0.11 0.20
Matches are distributed among these distances:
17 4 0.03
18 36 0.22
19 64 0.40
20 16 0.10
21 28 0.17
22 10 0.06
23 2 0.01
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTAATATTTTTATAATT
Found at i:89292143 original size:30 final size:28
Alignment explanation
Indices: 89292065--89292236 Score: 95
Period size: 29 Copynumber: 6.0 Consensus size: 28
89292055 TTTATGATTT
* * ** *
89292065 TTTTAATATTTTTTATAAGTTCATATTAA
1 TTTTAATA-TTTTTATTATTTTTTATAAA
89292094 TTTTAATATTTTTATTATTTTTTATAAA
1 TTTTAATATTTTTATTATTTTTTATAAA
89292122 TTTT-ATAATTTTATAATTATTTTTTA-ATAA
1 TTTTAAT-ATTTT-T-ATTATTTTTTATA-AA
* * *
89292152 TTCTAATATATTTTTTTA-ATTTTA-AATA
1 TTTTAATAT-TTTTATTATTTTTTATAA-A
* *
89292180 TTTTAAATAATTTTTATTA-ATTTTATAAT
1 TTTT-AAT-ATTTTTATTATTTTTTATAAA
* *
89292209 TTGTTTATA-ATTTATTATATTTTTATAA
1 TT-TTAATATTTTTATTAT-TTTTTATAA
89292237 TGTTTATAAG
Statistics
Matches: 116, Mismatches: 14, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
27 10 0.09
28 35 0.30
29 41 0.35
30 25 0.22
31 5 0.04
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (28 bp):
TTTTAATATTTTTATTATTTTTTATAAA
Found at i:89292179 original size:20 final size:20
Alignment explanation
Indices: 89292122--89292180 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
89292112 TTTTTATAAA
*
89292122 TTTTATAATTTTATAAT-TAT
1 TTTTTTAATTTTA-AATATAT
*
89292142 TTTTTAATAATTCT-AATATAT
1 TTTTT--TAATTTTAAATATAT
89292163 TTTTTTAATTTTAAATAT
1 TTTTTTAATTTTAAATAT
89292181 TTTAAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
19 6 0.19
20 12 0.38
21 8 0.25
22 6 0.19
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTTAATTTTAAATATAT
Found at i:89292274 original size:38 final size:35
Alignment explanation
Indices: 89292064--89292280 Score: 135
Period size: 38 Copynumber: 5.9 Consensus size: 35
89292054 TTTTATGATT
* *
89292064 TTTTTAATATTTTTTATAAGTTCATATTAATTTTA-ATA
1 TTTTT-ATATTTTTAATAA-TTTATA-TAATTTTATA-A
*
89292102 TTTTTATTATTTTTTATAAATTT-TATAATTTTATAA
1 TTTTTA-TATTTTTAAT-AATTTATATAATTTTATAA
* *
89292138 ---TTAT-TTTTTAATAATTCTAATATATTTTTTTAA
1 TTTTTATATTTTTAATAATT-T-ATATAATTTTATAA
* * *
89292171 TTTTAAATATTTTAAATAATTTTTATTAATTTTATAA
1 TTTT-TATATTTTTAATAATTTATA-TAATTTTATAA
*
89292208 TTTGTTTATAATTTATT-AT-ATTTTTATAATGTTTATAA
1 -TT-TTTAT-ATTT-TTAATAATTTATATAAT-TTTATAA
89292246 GTTTTTATATTTTTAATAAGTTTATATAAATTTTA
1 -TTTTTATATTTTTAATAA-TTTATAT-AATTTTA
89292281 ATATATAATT
Statistics
Matches: 145, Mismatches: 13, Indels: 42
0.73 0.06 0.21
Matches are distributed among these distances:
30 4 0.03
31 8 0.06
32 1 0.01
33 14 0.10
35 2 0.01
36 18 0.12
37 26 0.18
38 58 0.40
39 13 0.09
40 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (35 bp):
TTTTTATATTTTTAATAATTTATATAATTTTATAA
Found at i:89292310 original size:17 final size:18
Alignment explanation
Indices: 89292103--89292320 Score: 51
Period size: 18 Copynumber: 11.8 Consensus size: 18
89292093 ATTTTAATAT
*
89292103 TTTTATTATTTTTTATAAA
1 TTTTATTA-TTTTTATAAC
*
89292122 TTTTA-TAATTTTATAA-
1 TTTTATTATTTTTATAAC
*
89292138 --TTATT-TTTTAATAA-
1 TTTTATTATTTTTATAAC
* *
89292152 TTCTAATATATTTTTTTAA-
1 TT-TTAT-TATTTTTATAAC
* * *
89292171 TTTTAAATATTTTAAATAAT
1 TTTT-ATTATTTT-TATAAC
* *
89292191 TTTTATTAATTTTATAATT
1 TTTTATTATTTTTATAA-C
* *
89292210 TGTTTATAATTTATTAT-AT
1 T-TTTATTATTT-TTATAAC
* * *
89292229 TTTTATAATGTTTATAAG
1 TTTTATTATTTTTATAAC
*
89292247 TTTT-TATATTTTTAATAAG
1 TTTTAT-TATTTTT-ATAAC
* *
89292266 TTTATATAAATTTTAATATATAAT
1 TTT-TAT-TA-TTT--T-TATAAC
89292290 TTTTATT-TTTTTATAAC
1 TTTTATTATTTTTATAAC
*
89292307 TTTTTTTATTTTTA
1 TTTTATTATTTTTA
89292321 AATAATTTTC
Statistics
Matches: 153, Mismatches: 24, Indels: 45
0.69 0.11 0.20
Matches are distributed among these distances:
14 10 0.07
15 1 0.01
17 27 0.18
18 40 0.26
19 36 0.24
20 17 0.11
21 7 0.05
22 3 0.02
23 3 0.02
24 8 0.05
25 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTATTATTTTTATAAC
Found at i:89292325 original size:20 final size:19
Alignment explanation
Indices: 89292289--89292329 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
89292279 TAATATATAA
**
89292289 TTTTTATTTTTTTATAACTT
1 TTTTTATTTTTAAATAA-TT
89292309 TTTTTATTTTTAAATAATT
1 TTTTTATTTTTAAATAATT
89292328 TT
1 TT
89292330 CTATGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTATTTTTAAATAATT
Found at i:89302743 original size:3 final size:3
Alignment explanation
Indices: 89302735--89302759 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
89302725 TTTATAAAAG
89302735 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
89302760 GAGTAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:89303453 original size:6 final size:6
Alignment explanation
Indices: 89303442--89303466 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
89303432 CCAATACCAG
89303442 CTCCAA CTCCAA CTCCAA CTCCAA C
1 CTCCAA CTCCAA CTCCAA CTCCAA C
89303467 GTCGGTCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (6 bp):
CTCCAA
Found at i:89303577 original size:51 final size:51
Alignment explanation
Indices: 89303522--89303639 Score: 184
Period size: 51 Copynumber: 2.3 Consensus size: 51
89303512 TCCAGTTCCA
*
89303522 GCACCACCACGCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCT-TCT
1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCT-T
*
89303573 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTCTCTT
1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT
* *
89303624 GCTCCACCACCTAAGG
1 GCACCACCACCCAAGG
89303640 CAGCCACTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 61 0.98
52 1 0.02
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.19
Consensus pattern (51 bp):
GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT
Found at i:89303658 original size:51 final size:51
Alignment explanation
Indices: 89303522--89303665 Score: 148
Period size: 51 Copynumber: 2.8 Consensus size: 51
89303512 TCCAGTTCCA
* ** * *
89303522 GCACCACCACGCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTTCT
1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
** *
89303573 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTC-TCTT
1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTC-T
* * * *
89303624 GCTCCACCACCTAAGGCAGCCACTCCCCCT-TATAAACCCCCA
1 GCACCACCACCCAAGGCACCCACT-CCCCTGTATAAGCCCCCA
89303666 GCTCCTGCAC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
50 2 0.02
51 76 0.93
52 4 0.05
ACGTcount: A:0.24, C:0.44, G:0.13, T:0.19
Consensus pattern (51 bp):
GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
Found at i:89307275 original size:10 final size:10
Alignment explanation
Indices: 89307260--89307293 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
89307250 ACGTGAGCCA
89307260 TTTCTATCTG
1 TTTCTATCTG
89307270 TTTCTATCTG
1 TTTCTATCTG
89307280 TTTTCTATCTG
1 -TTTCTATCTG
89307291 TTT
1 TTT
89307294 GAGGAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (10 bp):
TTTCTATCTG
Found at i:89307286 original size:11 final size:11
Alignment explanation
Indices: 89307260--89307293 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
89307250 ACGTGAGCCA
89307260 TTTCTATCTG-
1 TTTCTATCTGT
89307270 TTTCTATCTGT
1 TTTCTATCTGT
89307281 TTTCTATCTGT
1 TTTCTATCTGT
89307292 TT
1 TT
89307294 GAGGAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (11 bp):
TTTCTATCTGT
Found at i:89309269 original size:37 final size:38
Alignment explanation
Indices: 89309185--89309275 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
89309175 ATATAATAAT
* * * * *
89309185 AAATTTAATATATATAATTAAAAGATATTGTTAACAAC
1 AAATATAATATATAAAATTAAAACATATTGTTAAAAAA
*
89309223 AAATAATAATATATAAAATT-AAACATATTTTTAAAAAA
1 AAAT-ATAATATATAAAATTAAAACATATTGTTAAAAAA
89309261 AAATATAATA-ATAAA
1 AAATATAATATATAAA
89309276 TTTATATTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
36 5 0.11
37 6 0.13
38 22 0.48
39 13 0.28
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (38 bp):
AAATATAATATATAAAATTAAAACATATTGTTAAAAAA
Found at i:89309368 original size:29 final size:29
Alignment explanation
Indices: 89309335--89309404 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
89309325 CCAAATTAAA
89309335 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
89309364 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
89309393 CACCCCCACTAA
1 CA-CCCCACTAA
89309405 CTCCATCACC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.03
29 27 0.75
30 8 0.22
ACGTcount: A:0.33, C:0.50, G:0.01, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:89309403 original size:18 final size:18
Alignment explanation
Indices: 89309380--89309415 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
89309370 ACTAAACCAT
*
89309380 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
89309398 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
89309416 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:89309828 original size:19 final size:18
Alignment explanation
Indices: 89309804--89309840 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
89309794 TTATGTTTCA
89309804 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
89309823 TATTATTATATATTTATT
1 TATTATTATATATTTATT
89309841 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:89309829 original size:63 final size:63
Alignment explanation
Indices: 89309689--89309831 Score: 168
Period size: 63 Copynumber: 2.3 Consensus size: 63
89309679 TTTAACCCCT
* * *
89309689 TTTTTATTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTATTATA
* *
89309753 TTTGTT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTT-TTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTATTATA
89309814 TTATTTATTTATTATTAT
1 TT-TTTATTT-TTATTAT
89309832 ATATTTATTA
Statistics
Matches: 69, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
61 17 0.25
62 8 0.12
63 27 0.39
64 15 0.22
65 2 0.03
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (63 bp):
TTTTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTATTATA
Found at i:89309852 original size:17 final size:14
Alignment explanation
Indices: 89309812--89309842 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
89309802 CATATTATTA
*
89309812 TATTATTTATTTAT
1 TATTATATATTTAT
89309826 TATTATATATTTAT
1 TATTATATATTTAT
89309840 TAT
1 TAT
89309843 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:89310526 original size:125 final size:126
Alignment explanation
Indices: 89310303--89310541 Score: 426
Period size: 125 Copynumber: 1.9 Consensus size: 126
89310293 ATCTTCTCTC
89310303 AAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
1 AAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
*
89310368 ACTGGGTTTTGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCACTTT
66 ACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCACTTT
* * *
89310429 AAAAATTTTCAAAAT-AAAGGCAATGTTTGGTATTTAAATAATTCGAAGAATCGTGCCCTAATGT
1 AAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
*
89310493 ACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
89310542 AGGCTAAAAC
Statistics
Matches: 108, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 93 0.86
126 15 0.14
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (126 bp):
AAAAATTTTCAAAATAAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGT
ACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCACTTT
Found at i:89313524 original size:52 final size:49
Alignment explanation
Indices: 89313439--89313805 Score: 449
Period size: 46 Copynumber: 7.6 Consensus size: 49
89313429 TTTGAGTACT
* ** *
89313439 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
89313485 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
89313537 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
89313583 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
89313635 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
89313681 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* ** *
89313733 TCTGATCAA--GA-GATAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
89313779 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
89313806 GCTGCACTTA
Statistics
Matches: 288, Mismatches: 12, Indels: 42
0.84 0.04 0.12
Matches are distributed among these distances:
46 149 0.52
48 5 0.02
49 6 0.02
50 5 0.02
52 123 0.43
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:89313559 original size:98 final size:98
Alignment explanation
Indices: 89313439--89313794 Score: 613
Period size: 98 Copynumber: 3.6 Consensus size: 98
89313429 TTTGAGTACT
* *
89313439 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
89313504 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
89313537 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
89313602 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
89313635 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
89313700 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * *
89313733 TCTGATCAAGAGATAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
89313795 AGTGATAAGT
Statistics
Matches: 247, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 247 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (98 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:89313817 original size:37 final size:37
Alignment explanation
Indices: 89313769--89313914 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
89313759 GATAGCTTTA
*
89313769 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
89313806 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
89313843 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
89313880 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
89313915 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:89325128 original size:90 final size:90
Alignment explanation
Indices: 89324920--89325128 Score: 310
Period size: 90 Copynumber: 2.3 Consensus size: 90
89324910 AATACCAGAT
* * * * *
89324920 CTTATTTTCACTGAGCAAGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTTCACGTACTGGC
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTAGAGAATCTTAGCTCCACGTACTGGC
*
89324985 AATGGAGCATATTCCAATCATAAGC
66 AATGGAGCAGATTCCAATCATAAGC
* * *
89325010 CTTATCTTCACTGAGCAGGAGTCAAGCAGATCAAATTTTGGAGAATCTTAGCTCCACGTACTGGT
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTAGAGAATCTTAGCTCCACGTACTGGC
*
89325075 GATGGAGCAGATTCCAATCATAAGC
66 AATGGAGCAGATTCCAATCATAAGC
* *
89325100 CTTATCTTCACTGAGTAGGAGTGGAGCAG
1 CTTATCTTCACTGAGCAGGAGTGAAGCAG
89325129 GCTAAATACC
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 106 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (90 bp):
CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTAGAGAATCTTAGCTCCACGTACTGGC
AATGGAGCAGATTCCAATCATAAGC
Found at i:89325150 original size:43 final size:44
Alignment explanation
Indices: 89325100--89325554 Score: 198
Period size: 45 Copynumber: 10.2 Consensus size: 44
89325090 AATCATAAGC
* *
89325100 CTTATCTTCACTGAGTAGGAGTGGAGCAGGCT-AAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAAATACCAGAT
* * * * * ***
89325143 CTTATCTTCACTGAGCAGAAGTGAAGCAGATTGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAA-ATACCAG-AT
* * * * * * ** *
89325189 CTTAGCTCCAC-GTA-CTGGCGATGGAGCAGATTCCAATCATAAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGACTCAAAT-ACCAGAT
* *
89325233 CTTATCTTCACTGAACAGGAGTGGAGCAGGCT-AAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAAATACCAGAT
* ***
89325276 CTTATCTTCACTGAGCAGGAGTGAAGCAGA-TCAAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAAA--TACCAG-AT
* * * * * ** *
89325322 CTTATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAATCATTAGCT
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGACTCAAAT-ACCAGAT
* *
89325367 -TTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAA-ATACCAGAT
* * * ***
89325411 CTTATCTTCATTGAGCAGGAGTGAAGCAGA-TCGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTC-AA-ATACCAG-AT
* * * * * *
89325457 CTTATCTTCAC-GTA-CCGGCGATGGAGCAGATTCCAATCATCAGCT
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGACTCAAAT-ACCAGAT
* * *
89325502 -TTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATACCAGGT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAA-ATACCAGAT
89325546 CTTATCTTC
1 CTTATCTTC
89325555 GGTAAGCAGG
Statistics
Matches: 298, Mismatches: 83, Indels: 60
0.68 0.19 0.14
Matches are distributed among these distances:
42 4 0.01
43 60 0.20
44 72 0.24
45 84 0.28
46 72 0.24
47 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGACTCAAATACCAGAT
Found at i:89325469 original size:135 final size:135
Alignment explanation
Indices: 89325010--89325778 Score: 1071
Period size: 135 Copynumber: 5.7 Consensus size: 135
89325000 AATCATAAGC
* * * *
89325010 CTTATCTTCACTGAGCAGGAGTCAAGCAGATCAAATTTTGGAGAATCTTAGCTCCACGTACTGGT
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
* * *
89325075 GATGGAGCAGATTCCAATCATAAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCT-AA-ATAC
66 GATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
89325138 CAGAT
131 CAGAT
* ** * *
89325143 CTTATCTTCACTGAGCAGAAGTGAAGCAGATTGAATTTTGGAGAATCTTAGCTCCACGTACTGGC
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
* * *
89325208 GATGGAGCAGATTCCAATCATAAGCCTTATCTTCACTGAACAGGAGTGGAGCAGGCT-AA-ATAC
66 GATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
89325271 CAGAT
131 CAGAT
89325276 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
*
89325341 GATGGAGCAGATTCCAATCATTAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
66 GATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
89325406 CAGAT
131 CAGAT
* * *
89325411 CTTATCTTCATTGAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTTCACGTACCGGC
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
89325476 GATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
66 GATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
*
89325541 CAGGT
131 CAGAT
** * * * * * *
89325546 CTTATCTTCGGTAAGCAGGAGCGGAA-CATATCAAATTTTGGTGAATCTTATCTCCATGTATCGG
1 CTTATCTTCACTGAGCAGGAG-TGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGG
* * * ** * * * ** * * *
89325610 CAATGGAGCAGGTTTCAGCCACCAACTTTATTTTTTCTAAGCAGGAATGGAGCAGGATAAATATA
65 CGATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATA
*
89325675 CTAGAT
130 CCAGAT
* * * * *
89325681 CTTATTTTCATTGAGCAGGAGTGAAGCAGATCGAATTTTGGAGCATCTTATCTCCACGTACCGGT
1 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
89325746 GATGGAGCAGATTCCAATCATCAGCTTTATCTT
66 GATGGAGCAGATTCCAATCATCAGCTTTATCTT
89325779 TACTAAGAAG
Statistics
Matches: 567, Mismatches: 65, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
133 240 0.42
134 5 0.01
135 319 0.56
136 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (135 bp):
CTTATCTTCACTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGC
GATGGAGCAGATTCCAATCATCAGCTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATAC
CAGAT
Found at i:89325924 original size:85 final size:86
Alignment explanation
Indices: 89325781--89326070 Score: 473
Period size: 85 Copynumber: 3.4 Consensus size: 86
89325771 TTTATCTTTA
* * *
89325781 CTAAGAAGTAGGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCTGAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
89325846 CGAAGATC-CGCCTTAACCCC
66 CGAAGATCTCGCCTTAACCCC
* * *
89325866 CTAAGCAGTAGGGTAACAGGCTAAAATTTATAGATCCTGGCTCGCCGAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
89325931 C-AA-ATACTCGCCTTAACCCC
66 CGAAGAT-CTCGCCTTAACCCC
*
89325951 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCAAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
89326016 CGAAGA-CTCGCCTTAACCCC
66 CGAAGATCTCGCCTTAACCCC
89326036 CTAAGCAGTAAGGTAACAGGCTAAAA-TTACAGATC
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATC
89326071 TTATCTTCGT
Statistics
Matches: 193, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
83 2 0.01
84 12 0.06
85 176 0.91
86 2 0.01
87 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (86 bp):
CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
CGAAGATCTCGCCTTAACCCC
Found at i:89326377 original size:18 final size:18
Alignment explanation
Indices: 89326354--89326389 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
89326344 ATTAAACCAT
*
89326354 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
89326372 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
89326390 TGCTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:89326796 original size:64 final size:63
Alignment explanation
Indices: 89326667--89326806 Score: 164
Period size: 63 Copynumber: 2.3 Consensus size: 63
89326657 AACCCCTTTT
* *
89326667 TTTA-TTTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTATTTTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATA
* * * *
89326730 TTTGTTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTTATTTTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTTTTATA
*
89326791 -TTATTTATTTATTATT
1 TTTATTTTTTTATTATT
89326807 ATATATTTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
60 14 0.21
61 13 0.19
62 4 0.06
63 23 0.34
64 13 0.19
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (63 bp):
TTTATTTTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATA
Found at i:89326805 original size:19 final size:18
Alignment explanation
Indices: 89326781--89326817 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
89326771 TTATGTTTCA
89326781 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
89326800 TATTATTATATATTTATT
1 TATTATTATATATTTATT
89326818 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:89326829 original size:17 final size:14
Alignment explanation
Indices: 89326789--89326819 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
89326779 CATATTATTA
*
89326789 TATTATTTATTTAT
1 TATTATATATTTAT
89326803 TATTATATATTTAT
1 TATTATATATTTAT
89326817 TAT
1 TAT
89326820 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:89327160 original size:3 final size:3
Alignment explanation
Indices: 89327128--89327188 Score: 79
Period size: 3 Copynumber: 19.7 Consensus size: 3
89327118 TACTGTTGTT
*
89327128 TTA TTAA TTA TT- TCTA TTAA TTA CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TT-A TTA TTA T-TA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
89327175 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
89327189 TATATATGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
2 1 0.02
3 44 0.85
4 7 0.13
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:89327525 original size:126 final size:126
Alignment explanation
Indices: 89327290--89327526 Score: 411
Period size: 126 Copynumber: 1.9 Consensus size: 126
89327280 CATTGATCTT
* * *
89327290 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCTTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
**
89327355 ACGTACTGGGTTTTGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
89327416 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
* *
89327481 ACGTACTGGGTTTCACTTTTTTTGTTTGTTTTGAATATTCGAATAT
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATAT
89327527 TCTATTAAGG
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 104 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:89328442 original size:30 final size:30
Alignment explanation
Indices: 89328406--89328465 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
89328396 TATTTTATTA
*
89328406 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
89328436 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
89328466 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:89337252 original size:7 final size:7
Alignment explanation
Indices: 89337240--89337324 Score: 54
Period size: 7 Copynumber: 12.9 Consensus size: 7
89337230 ATCAAATCAT
89337240 TAAACCC
1 TAAACCC
89337247 TAAA-CC
1 TAAACCC
89337253 TAAA-CC
1 TAAACCC
**
89337259 TAAACTT
1 TAAACCC
*
89337266 TGAACCC
1 TAAACCC
*
89337273 CAAACCC
1 TAAACCC
89337280 -AAA-CC
1 TAAACCC
89337285 TAAACCC
1 TAAACCC
* *
89337292 AAAACCT
1 TAAACCC
*
89337299 TAAATCC
1 TAAACCC
*
89337306 TAAA-TC
1 TAAACCC
89337312 TAAACCC
1 TAAACCC
*
89337319 TGAACC
1 TAAACC
89337325 TCAAGGTTTG
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
5 2 0.03
6 23 0.39
7 34 0.58
ACGTcount: A:0.45, C:0.35, G:0.02, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:89337258 original size:13 final size:13
Alignment explanation
Indices: 89337240--89337325 Score: 59
Period size: 13 Copynumber: 6.5 Consensus size: 13
89337230 ATCAAATCAT
89337240 TAAACCCTAAA-CC
1 TAAA-CCTAAACCC
**
89337253 TAAACCTAAACTT
1 TAAACCTAAACCC
* *
89337266 TGAACCCCAAACCC
1 T-AAACCTAAACCC
89337280 -AAACCTAAACCC
1 TAAACCTAAACCC
* *
89337292 AAAACCTTAAATCC
1 TAAACC-TAAACCC
*
89337306 TAAATCTAAACCC
1 TAAACCTAAACCC
*
89337319 TGAACCT
1 TAAACCT
89337326 CAAGGTTTGG
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
12 16 0.29
13 21 0.38
14 18 0.33
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.19
Consensus pattern (13 bp):
TAAACCTAAACCC
Found at i:89337382 original size:21 final size:21
Alignment explanation
Indices: 89337344--89337388 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
89337334 GGGGTTCAGA
*
89337344 GTTTAAGGTTAAACGTTTAAG
1 GTTTAAGGCTAAACGTTTAAG
* * *
89337365 GTTTAAGGCTCAAGGTTTGAG
1 GTTTAAGGCTAAACGTTTAAG
89337386 GTT
1 GTT
89337389 AGAGGTTCTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.38
Consensus pattern (21 bp):
GTTTAAGGCTAAACGTTTAAG
Found at i:89338844 original size:17 final size:17
Alignment explanation
Indices: 89338812--89338864 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
89338802 TTTTAGTCCT
89338812 AATTATAAAAATATTAAA
1 AATTATAAAAA-ATTAAA
89338830 AATTATAAAAAATT-AA
1 AATTATAAAAAATTAAA
*
89338846 CATTATAAAAAAATTAAA
1 AATTAT-AAAAAATTAAA
89338864 A
1 A
89338865 TTTTTCAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 7 0.23
17 11 0.35
18 13 0.42
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
AATTATAAAAAATTAAA
Found at i:89339041 original size:20 final size:20
Alignment explanation
Indices: 89339018--89339055 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
89339008 TATTTACTTA
* *
89339018 ATTTATTTTTTAAAATTTAT
1 ATTTAGTTTTAAAAATTTAT
89339038 ATTTAGTTTTAAAAATTT
1 ATTTAGTTTTAAAAATTT
89339056 TAAGACTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
ATTTAGTTTTAAAAATTTAT
Found at i:89343434 original size:60 final size:59
Alignment explanation
Indices: 89343333--89343449 Score: 171
Period size: 60 Copynumber: 2.0 Consensus size: 59
89343323 GGGTGAGATG
* *
89343333 TTAATGTAAATCTGTATTTTACCATGTAAATTAGGCTATAACTTAAGATTTTAACTATT
1 TTAATGTAAATCTGTATTTTACCATGGAAATTAAGCTATAACTTAAGATTTTAACTATT
* * * *
89343392 TTAATGTAAATTTGTATTTTTAGCATGGAAATTAAGCTATAACTTAGGATTTTGACTA
1 TTAATGTAAATCTGTA-TTTTACCATGGAAATTAAGCTATAACTTAAGATTTTAACTA
89343450 GTTAGTTTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
59 15 0.29
60 36 0.71
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.44
Consensus pattern (59 bp):
TTAATGTAAATCTGTATTTTACCATGGAAATTAAGCTATAACTTAAGATTTTAACTATT
Found at i:89344054 original size:23 final size:23
Alignment explanation
Indices: 89343990--89344054 Score: 55
Period size: 23 Copynumber: 2.9 Consensus size: 23
89343980 ATGAATGTGT
* *
89343990 ATTTGAAATAATTATTTAA-AAT
1 ATTTGAAATAATTAATTAATAAC
* *
89344012 ATTTCACATATAA--AAATAATAAC
1 ATTTGA-A-ATAATTAATTAATAAC
89344035 ATTTGAAATAATTAATTAAT
1 ATTTGAAATAATTAATTAAT
89344055 TTTATAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 9
0.68 0.13 0.19
Matches are distributed among these distances:
21 4 0.12
22 10 0.31
23 14 0.44
24 4 0.12
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (23 bp):
ATTTGAAATAATTAATTAATAAC
Found at i:89351490 original size:30 final size:30
Alignment explanation
Indices: 89351449--89351513 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
89351439 TTCAAATTCA
89351449 CCTTA-TTTTCATTTGAGAATATTCAATTT
1 CCTTATTTTTCATTTGAGAATATTCAATTT
* *
89351478 CCTTATTTTTCATTTGATAATATTCAGTTT
1 CCTTATTTTTCATTTGAGAATATTCAATTT
*
89351508 CTTTAT
1 CCTTAT
89351514 CAAAAACAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.25, C:0.14, G:0.06, T:0.55
Consensus pattern (30 bp):
CCTTATTTTTCATTTGAGAATATTCAATTT
Found at i:89362152 original size:13 final size:13
Alignment explanation
Indices: 89362134--89362158 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89362124 TTTAATTAAT
89362134 AATTATTTATTTA
1 AATTATTTATTTA
89362147 AATTATTTATTT
1 AATTATTTATTT
89362159 GCTACTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTATTTATTTA
Found at i:89365823 original size:7 final size:7
Alignment explanation
Indices: 89365811--89365845 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
89365801 ATAAAAAGGT
89365811 AATAATA
1 AATAATA
89365818 AATAATA
1 AATAATA
89365825 AATAATA
1 AATAATA
89365832 AATAATA
1 AATAATA
89365839 CAATAAT
1 -AATAAT
89365846 TATAAATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (7 bp):
AATAATA
Found at i:89372439 original size:24 final size:24
Alignment explanation
Indices: 89372392--89372440 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
89372382 TAAAATATCG
*
89372392 TGTTCCTTTTAATAAAAAATTATT
1 TGTTCCTTTTAATAAAAAAGTATT
*
89372416 TGTTCCTTTTTAAT-TAAAAGTATT
1 TGTTCC-TTTTAATAAAAAAGTATT
89372440 T
1 T
89372441 ATATTATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (24 bp):
TGTTCCTTTTAATAAAAAAGTATT
Found at i:89373138 original size:47 final size:47
Alignment explanation
Indices: 89373034--89373168 Score: 155
Period size: 47 Copynumber: 2.9 Consensus size: 47
89373024 ATGCCATTTA
* * * *
89373034 TGGACAAGCCACCACATAGA-TGCCAATAAATGGCCACATAACATATCG
1 TGGACAAGCCACCACATA-ATTACCAAT-AACGACCACATAACACATCG
* *
89373082 TGGACAAGCCACCACATAATTTCCAATAACGACCACATAGCACATCG
1 TGGACAAGCCACCACATAATTACCAATAACGACCACATAACACATCG
* * * *
89373129 TGGATAAGCCATCACATAATTACCGATAACAACCACATAA
1 TGGACAAGCCACCACATAATTACCAATAACGACCACATAA
89373169 TCGCAGTTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
47 51 0.68
48 24 0.32
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (47 bp):
TGGACAAGCCACCACATAATTACCAATAACGACCACATAACACATCG
Found at i:89373733 original size:243 final size:243
Alignment explanation
Indices: 89373305--89373768 Score: 928
Period size: 243 Copynumber: 1.9 Consensus size: 243
89373295 CTCGATTTTT
89373305 ACACATGCATGTATCATGCTCACAATTTCACATATCACATAATTTTCACTTTAGTATGCTTTAAT
1 ACACATGCATGTATCATGCTCACAATTTCACATATCACATAATTTTCACTTTAGTATGCTTTAAT
89373370 ATACACATTTATATTAAAACATTGATTTTAACATGCACATACATATATCACATGTTTAGATCATC
66 ATACACATTTATATTAAAACATTGATTTTAACATGCACATACATATATCACATGTTTAGATCATC
89373435 ACATATCAATCTAGCCATAAATCATATAACATAGAGTTGAGATCAATATTACATCATCAGATATA
131 ACATATCAATCTAGCCATAAATCATATAACATAGAGTTGAGATCAATATTACATCATCAGATATA
89373500 AAAAATCATGGATTTTCACATCACTTTCACATCACTTAATAGTTTAAG
196 AAAAATCATGGATTTTCACATCACTTTCACATCACTTAATAGTTTAAG
89373548 ACACATGCATGTATCATGCTCACAATTTCACATATCACATAATTTTCACTTTAGTATGCTTTAAT
1 ACACATGCATGTATCATGCTCACAATTTCACATATCACATAATTTTCACTTTAGTATGCTTTAAT
89373613 ATACACATTTATATTAAAACATTGATTTTAACATGCACATACATATATCACATGTTTAGATCATC
66 ATACACATTTATATTAAAACATTGATTTTAACATGCACATACATATATCACATGTTTAGATCATC
89373678 ACATATCAATCTAGCCATAAATCATATAACATAGAGTTGAGATCAATATTACATCATCAGATATA
131 ACATATCAATCTAGCCATAAATCATATAACATAGAGTTGAGATCAATATTACATCATCAGATATA
89373743 AAAAATCATGGATTTTCACATCACTT
196 AAAAATCATGGATTTTCACATCACTT
89373769 AATAGTTTAA
Statistics
Matches: 221, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
243 221 1.00
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.35
Consensus pattern (243 bp):
ACACATGCATGTATCATGCTCACAATTTCACATATCACATAATTTTCACTTTAGTATGCTTTAAT
ATACACATTTATATTAAAACATTGATTTTAACATGCACATACATATATCACATGTTTAGATCATC
ACATATCAATCTAGCCATAAATCATATAACATAGAGTTGAGATCAATATTACATCATCAGATATA
AAAAATCATGGATTTTCACATCACTTTCACATCACTTAATAGTTTAAG
Found at i:89373851 original size:4 final size:4
Alignment explanation
Indices: 89373842--89373870 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
89373832 TAATATACTC
89373842 ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
89373871 CATTTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:89379509 original size:132 final size:131
Alignment explanation
Indices: 89379327--89379579 Score: 452
Period size: 132 Copynumber: 1.9 Consensus size: 131
89379317 CTGCTATCTT
*
89379327 CGATCTACTTCACGCCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTCCTATCAATATA
1 CGATCTACTTCACACCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTCCTATCAATATA
*
89379392 GGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTCCT
66 GGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTACTTCCT
89379457 G
131 G
*
89379458 CGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTCCTATCAATAT
1 CGATCTACTTC-ACACCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTCCTATCAATAT
**
89379523 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAGACAAGAT
65 AGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGAT
89379580 TTGTATCTTG
Statistics
Matches: 116, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
131 11 0.09
132 105 0.91
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (131 bp):
CGATCTACTTCACACCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTCCTATCAATATA
GGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTACTTCCT
G
Found at i:89379603 original size:219 final size:219
Alignment explanation
Indices: 89379224--89379857 Score: 1018
Period size: 219 Copynumber: 2.9 Consensus size: 219
89379214 ATACAGGGAT
* * * * *
89379224 AAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATTTGTATCTTGGATCC
1 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCC
89379289 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
66 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
89379354 ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
131 ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
89379419 TACTTCACGCCAATACATGAAGAC
196 TACTTCACGCCAATACATGAAGAC
89379443 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCC
1 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCC
89379508 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
66 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
89379573 ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
131 ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
89379638 TACTTCACGCCAATACATGAAGAC
196 TACTTCACGCCAATACATGAAGAC
* * *
89379662 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCC
* * * * ***
89379727 ATTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAG
66 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
* * * * * * * * * *
89379792 ACAAGATCTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGA
131 ACAAGATTTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGA
89379856 TC
194 TC
89379858 CATTCCTACC
Statistics
Matches: 388, Mismatches: 25, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
219 343 0.88
220 24 0.06
221 21 0.05
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (219 bp):
AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCC
ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
TACTTCACGCCAATACATGAAGAC
Found at i:89379881 original size:263 final size:263
Alignment explanation
Indices: 89379536--89380057 Score: 913
Period size: 263 Copynumber: 2.0 Consensus size: 263
89379526 AAGATAGGAC
* * * *
89379536 CTGCTATCTTCGATCTACTTCACGCCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTCC
1 CTGCTATCTTCGATCTACTTCACACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCC
* *
89379601 TATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
66 TACCAATATAGGAAGATAGGACCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
89379666 TCTACT-TCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATT
131 TCTACTCT-CTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATT
89379730 TCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
195 TCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
89379795 AGAT
260 AGAT
* *
89379799 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA-TTC
1 CTGCTATCTTCGATCTACTTC-ACACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC
*
89379863 CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
65 CTACCAATATAGGAAGATAGGACCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* *
89379928 ATCTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATT
130 ATCTACTCTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATT
89379993 TCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
195 TCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
89380058 TGACCTGCAA
Statistics
Matches: 246, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
263 211 0.86
264 35 0.14
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (263 bp):
CTGCTATCTTCGATCTACTTCACACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCC
TACCAATATAGGAAGATAGGACCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
TCTACTCTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTT
CCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
GAT
Found at i:89379902 original size:219 final size:219
Alignment explanation
Indices: 89379224--89380038 Score: 971
Period size: 219 Copynumber: 3.7 Consensus size: 219
89379214 ATACAGGGAT
* * * * * * * *
89379224 AAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATTTGTATCTTGGATCC
1 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
* *
89379289 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
66 ACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATAGGAAG
* *
89379354 ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
131 ACAAGATCTGTATCTTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
89379419 TACTTCACGCCAATACATGAAGAC
196 TACTTCACGCCAATACATGAAGAC
* * *
89379443 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATTTGTATCTTGGATCC
1 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
* *
89379508 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATGGGAAG
66 ACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATAGGAAG
* *
89379573 ACAAGATTTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
131 ACAAGATCTGTATCTTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
89379638 TACTTCACGCCAATACATGAAGAC
196 TACTTCACGCCAATACATGAAGAC
89379662 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
1 AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
* * * * *
89379727 ATTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAG
66 ACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATAGGAAG
* * * * * * * *
89379792 ACAAGATCTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGA
131 ACAAGATCTG-TATCTTCGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGA
* * * * *
89379856 TCCA-TTC-CTACCAATATAGGAAGAT
194 TCTACTTCAC-GCCAATACATGAAGAC
* * * * *** *
89379881 AGGATC-AGCTAT-CTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTCTCTTCGA
1 AAGATCTA-CT-TCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGA
* * * * * * * * *
89379943 TCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCATTTC-CTACCAATATA
63 TCCACTTC-CTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATATA
* * * *
89380006 GGAAGATAGGATCAGCTATCTTCGATCTACTTC
126 GGAAGACAAGATCTG-TATCTTCGATCCACTTC
89380039 ACGCCAATAC
Statistics
Matches: 534, Mismatches: 54, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
218 25 0.05
219 440 0.82
220 48 0.09
221 21 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (219 bp):
AAGATCTACTTCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
ACTTCCTACCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATATAGGAAG
ACAAGATCTGTATCTTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATC
TACTTCACGCCAATACATGAAGAC
Found at i:89379932 original size:131 final size:132
Alignment explanation
Indices: 89379536--89380057 Score: 906
Period size: 132 Copynumber: 4.0 Consensus size: 132
89379526 AAGATAGGAC
* * * * * * *
89379536 CTGCTATCTTCGATCTACTTC-ACGCCAATATGGGAAGACAAGATTTGTATCTTGGATCCACTTC
1 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTC
* * *
89379600 CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
89379665 AT
131 AT
* *
89379667 CTACT-TCCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTT
1 CTGCTCT-CTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTT
89379731 CCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
65 CCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
89379796 GAT
130 GAT
89379799 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA-TTC
1 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTC
89379863 CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
66 CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
89379928 AT
131 AT
89379930 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTC
1 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTC
89379995 CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
66 CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
89380058 TGACCTGCAA
Statistics
Matches: 374, Mismatches: 13, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
130 1 0.00
131 148 0.40
132 224 0.60
133 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTC
CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
AT
Found at i:89402773 original size:79 final size:84
Alignment explanation
Indices: 89402690--89403470 Score: 314
Period size: 87 Copynumber: 9.3 Consensus size: 84
89402680 GGGATAAGAT
*
89402690 CTGCTTTCTTCGATCTACTTCA-CCACATATGGGAAGACAAGA-TTGTATC-TGAT-CACTTCCT
1 CTGCTATCTTCGATCTACTTCACCCA-ATAT-GGAAGACAAGATTTGTATCTTGATCCACTTCCT
89402751 A-CAATATAGGAA-ATAGGA-
64 ATCAATATAGGAAGATAGGAC
89402769 CTGCTATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTTGTATCTTGATCCACTTCCTAT
1 CTGCTATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTTGTATCTTGATCCACTTCCTAT
89402834 CAATATAGGAAGATAGGAC
66 CAATATAGGAAGATAGGAC
** * *
89402853 CTGCTATCTTCGATCTACTTCACGCCAATACAT-GAAGACAAGATCTACT-TCCTGCGATCTACT
1 CTGCTATCTTCGATCTACTTCAC-CCAAT--ATGGAAGACAAGAT-TTGTAT-CT-TGATCCACT
* * *
89402916 TCGC-ACCAATAT-GGAAGACA--AT
60 TC-CTATCAATATAGGAAGATAGGAC
* * * * *
89402938 TTG-T-T-TT-GATC-ACTTC-CACAATATAGGAAG--AAGA-CTGCT-T-TCGATCTACTT-C-
1 CTGCTATCTTCGATCTACTTCACCCAATAT-GGAAGACAAGATTTG-TATCTTGATCCACTTCCT
* *
89402990 ACGCAATAT-GGAAGA-AAGA-
64 A-TCAATATAGGAAGATAGGAC
* * * * * ** *
89403009 TTG-TATCTTCGATCCACTTC-CTACAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCAC-CCAATAT-GGAAGACAAGATTTG-TATCTT-GATCCACTTC
** * * * * *
89403072 AC-GCCAATACATGAAGACAAGAT
62 -CTATCAATATAGGAAGATAGGAC
* * * * * *
89403095 CTACTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA-TTC
1 CTGCTATCTTCGATCTACTTC-AC-CCAATAT-GGAAGACAAGATTTGTATCTT-GATCCACTTC
* *
89403159 CTACCAATATAGGAAGATAGGAT
62 CTATCAATATAGGAAGATAGGAC
* * * *
89403182 CAGCTATCTTCGATCTACTTCACGCCAATACAT-GAAGACAAGATCTGCTCTCTTCGATCTACTT
1 CTGCTATCTTCGATCTACTTCAC-CCAAT--ATGGAAGACAAGATTTG-TATCTT-GATCCACTT
* * * * *
89403246 CGCCACCAA-AT-GGAAGACAAGAT
61 C-CTATCAATATAGGAAGATAGGAC
* * * * ** *
89403269 CTGC-ATCTTCGATCCATTTC-CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTT
1 CTGCTATCTTCGATCTACTTCAC--CCAATAT-GGAAGACAAGATTTG-TATCTT-GATCCACTT
** * * * * *
89403332 CAC-GCCAATACATGAAGACAAGAT
61 C-CTATCAATATAGGAAGATAGGAC
* * * *
89403356 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA-TT-
1 CTGCTATCTTCGATCTACTTC-AC-CCAATAT-GGAAGACAAGATTTGTATCTT-GATCCACTTC
* *
89403419 CT-CCAATATAGGAAGATAGGAT
62 CTATCAATATAGGAAGATAGGAC
*
89403441 CAGCTATCTTCGATCTACTTCACGCCAATA
1 CTGCTATCTTCGATCTACTTCAC-CCAATA
89403471 CATGAAGACA
Statistics
Matches: 569, Mismatches: 79, Indels: 103
0.76 0.11 0.14
Matches are distributed among these distances:
70 3 0.01
71 16 0.03
72 12 0.02
73 3 0.01
74 4 0.01
75 8 0.01
76 19 0.03
78 22 0.04
79 38 0.07
80 13 0.02
81 14 0.02
82 22 0.04
83 12 0.02
84 39 0.07
85 53 0.09
86 83 0.15
87 103 0.18
88 58 0.10
89 46 0.08
90 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (84 bp):
CTGCTATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTTGTATCTTGATCCACTTCCTAT
CAATATAGGAAGATAGGAC
Found at i:89402882 original size:44 final size:44
Alignment explanation
Indices: 89402685--89403480 Score: 623
Period size: 44 Copynumber: 19.0 Consensus size: 44
89402675 ATACAGGGAT
* *
89402685 AAGATCTGCTTTCTTCGATCTACTT--CACCACATATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCA-ATATAGGAAGAC
*
89402728 AAGAT-TG-TATC-T-GATC-ACTTC-CTA-CAATATAGGAA-AT
1 AAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGAC
*
89402765 AGGA-CTGCTATCTTCGATCTACTTCAC-CCAATAT-GGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* * * *
89402806 AAGATTTG-TATCTT-GATCCACTTC-CTATCAATATAGGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGAC
* * * * *
89402848 AGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* * *
89402892 AAGATCTACT-TCCTGCGATCTACTTCGCACCAATAT-GGAAGAC
1 AAGATCTGCTAT-CTTCGATCTACTTCACACCAATATAGGAAGAC
*
89402935 -A-ATTTG-T-T-TT-GATC-ACTTC-CA-CAATATAGGAAG--
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
*
89402968 AAGA-CTGC--T-TTCGATCTACTTCAC-GCAATAT-GGAAGA-
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* *
89403005 AAGAT-TG-TATCTTCGATCCACTTC-CTA-CAATATAGGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGAC
* * * * *
89403046 AGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* * * * *
89403090 AAGATCTACTTTCTGCGATCTACTTCGCCACCAATATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGAC
* *
89403135 AAGATCTGC-ATCTTCGATCCA-TTC-CTACCAATATAGGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGAC
* * * * *
89403177 AGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* *
89403221 AAGATCTGCTCTCTTCGATCTACTTCGCCACCAA-AT-GGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGAC
* * *
89403264 AAGATCTGC-ATCTTCGATCCATTTC-CTACCAATATAGGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGAC
* * * * *
89403307 AGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* * *
89403351 AAGATCTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGAC
* * *
89403396 AAGATCTGC-ATCTTCGATCCA-TT--CTCCAATATAGGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
* * * * *
89403436 AGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
89403480 A
1 A
89403481 TGACCTGCAA
Statistics
Matches: 597, Mismatches: 101, Indels: 109
0.74 0.13 0.14
Matches are distributed among these distances:
34 12 0.02
35 12 0.02
36 15 0.03
37 23 0.04
38 19 0.03
39 27 0.05
40 49 0.08
41 53 0.09
42 57 0.10
43 78 0.13
44 201 0.34
45 51 0.09
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (44 bp):
AAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGAC
Found at i:89403003 original size:36 final size:34
Alignment explanation
Indices: 89402907--89403006 Score: 89
Period size: 36 Copynumber: 2.8 Consensus size: 34
89402897 CTACTTCCTG
*
89402907 CGATCTACTTCGCACCAATATGGAAGACAATTTGTTT
1 CGATCTACTT--CACCAATATGGAAGA-AATCTGTTT
*
89402944 TGATC-ACTTC-CACAATATAGGAAGAAGA-CTGCTTT
1 CGATCTACTTCAC-CAATAT-GGAAGAA-ATCTG-TTT
89402979 CGATCTACTTCACGCAATATGGAAGAAA
1 CGATCTACTTCAC-CAATATGGAAGAAA
89403007 GATTGTATCT
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
33 1 0.02
34 10 0.19
35 15 0.28
36 16 0.30
37 11 0.21
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (34 bp):
CGATCTACTTCACCAATATGGAAGAAATCTGTTT
Found at i:89403049 original size:198 final size:207
Alignment explanation
Indices: 89402685--89403225 Score: 761
Period size: 198 Copynumber: 2.6 Consensus size: 207
89402675 ATACAGGGAT
* *
89402685 AAGATCTGCTTTCTTCGATCTACTT--CACCACATATGGGAAGACAAGATTGTATCTGATCACTT
1 AAGATCTACTTTCTGCGATCTACTTCGCACCA-ATATGGGAAGACAAGATTGTATCTGATCACTT
89402748 CCTACAATATAGGAAATAGGACTGCTATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTT
65 CCTACAATATAGGAAATAGGACTGC-ATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTT
89402813 GTATCTTGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGC
129 GTATCTTGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGC
89402878 CAATACATGAAGAC
194 CAATACATGAAGAC
* * *
89402892 AAGATCTACTTCCTGCGATCTACTTCGCACCAATAT-GGAAGACAA-TTTGT-TTTGATCACTTC
1 AAGATCTACTTTCTGCGATCTACTTCGCACCAATATGGGAAGACAAGATTGTATCTGATCACTTC
*
89402954 C-ACAATATAGGAAGA-A-GACTGC-T-TTCGATCTACTTCACGCAATATGGAAGA-AAGA-TTG
66 CTACAATATAGGAA-ATAGGACTGCATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTTG
89403012 TATCTTCGATCCACTTCCTA-CAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGC
130 TATCTT-GATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGC
89403076 CAATACATGAAGAC
194 CAATACATGAAGAC
*
89403090 AAGATCTACTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATC-
1 AAGATCTACTTTCTGCGATCTACTTCG-CACCAATATGGGAAGACAAGAT-TGTATC-T-GATCA
*
89403154 CATTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACAT-GAA
62 C-TTCCTA-CAATATAGGAA-ATAGGA-CTGC-ATCTTCGATCTACTTCAC-CCAAT--ATGGAA
89403218 GACAAGAT
119 GACAAGAT
89403226 CTGCTCTCTT
Statistics
Matches: 297, Mismatches: 12, Indels: 40
0.85 0.03 0.11
Matches are distributed among these distances:
198 93 0.31
199 26 0.09
200 36 0.12
201 2 0.01
202 2 0.01
203 7 0.02
204 15 0.05
205 21 0.07
206 5 0.02
207 44 0.15
208 5 0.02
209 7 0.02
210 3 0.01
212 1 0.00
213 15 0.05
214 4 0.01
215 5 0.02
216 6 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (207 bp):
AAGATCTACTTTCTGCGATCTACTTCGCACCAATATGGGAAGACAAGATTGTATCTGATCACTTC
CTACAATATAGGAAATAGGACTGCATCTTCGATCTACTTCACCCAATATGGAAGACAAGATTTGT
ATCTTGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCA
ATACATGAAGAC
Found at i:89403348 original size:130 final size:131
Alignment explanation
Indices: 89402977--89403480 Score: 850
Period size: 130 Copynumber: 3.9 Consensus size: 131
89402967 GAAGACTGCT
*
89402977 TTCGATCTACTT---CACGCAATAT-GGAAGA-AAGAT-TGTATCTTCGATCCACTTCCTA-CAA
1 TTCGATCTACTTCGCCAC-CAATATGGGAAGACAAGATCTGCATCTTCGATCCA-TTCCTACCAA
* * *
89403035 TATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACT
64 TATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
*
89403100 TTC
129 CTC
*
89403103 TGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTCCTACCAATA
1 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTCCTACCAATA
89403168 TAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTCT
66 TAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTCT
89403233 C
131 C
89403234 TTCGATCTACTTCGCCACCAA-AT-GGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAAT
1 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA-TTCCTACCAAT
89403297 ATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTC
65 ATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTC
89403362 TC
130 TC
89403364 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATT-CT-CCAATA
1 TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTCCTACCAATA
89403427 TAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
66 TAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
89403481 TGACCTGCAA
Statistics
Matches: 361, Mismatches: 7, Indels: 17
0.94 0.02 0.04
Matches are distributed among these distances:
126 11 0.03
128 6 0.02
129 97 0.27
130 114 0.32
131 105 0.29
132 28 0.08
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (131 bp):
TTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTCCTACCAATA
TAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTCT
C
Found at i:89419187 original size:88 final size:88
Alignment explanation
Indices: 89419038--89419210 Score: 337
Period size: 88 Copynumber: 2.0 Consensus size: 88
89419028 GAATTACGGT
*
89419038 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAGGTGATTGAGA
1 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
89419103 TACGTTGTTGATTGTTGATTGGA
66 TACGTTGTTGATTGTTGATTGGA
89419126 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
1 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
89419191 TACGTTGTTGATTGTTGATT
66 TACGTTGTTGATTGTTGATT
89419211 TATGTCAATT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.21, C:0.10, G:0.19, T:0.50
Consensus pattern (88 bp):
TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
TACGTTGTTGATTGTTGATTGGA
Found at i:89420812 original size:17 final size:17
Alignment explanation
Indices: 89420790--89420827 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
89420780 CGTAAGCTCA
89420790 TTTGAGACTCAGTTTAG
1 TTTGAGACTCAGTTTAG
89420807 TTTGAGACTCAGTTTAG
1 TTTGAGACTCAGTTTAG
89420824 TTTG
1 TTTG
89420828 TAAATCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.11, G:0.24, T:0.45
Consensus pattern (17 bp):
TTTGAGACTCAGTTTAG
Found at i:89421256 original size:33 final size:33
Alignment explanation
Indices: 89421219--89421284 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
89421209 TAGATAAGTC
*
89421219 GTCCATAAACAAAAAAGTAGATGAAAAACAATT
1 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
89421252 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
1 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
89421285 ATGGGCATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.59, C:0.11, G:0.12, T:0.18
Consensus pattern (33 bp):
GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
Found at i:89422284 original size:14 final size:15
Alignment explanation
Indices: 89422259--89422288 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
89422249 GAGTATAGTA
89422259 AAATATTTTAAAAAT
1 AAATATTTTAAAAAT
*
89422274 AAATATTTAAAAAAT
1 AAATATTTTAAAAAT
89422289 GAGAAATCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATATTTTAAAAAT
Found at i:89426668 original size:22 final size:22
Alignment explanation
Indices: 89426643--89426704 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 22
89426633 TAGCCTAAAG
89426643 ATTTACATGCCAACATTAGCTA
1 ATTTACATGCCAACATTAGCTA
* *
89426665 ATTTATA-GCCTA-A--AG---
1 ATTTACATGCCAACATTAGCTA
89426680 ATTTACATGCCAACATTAGCTA
1 ATTTACATGCCAACATTAGCTA
89426702 ATT
1 ATT
89426705 AACCTATACA
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
15 6 0.21
16 4 0.14
17 1 0.03
18 2 0.07
19 2 0.07
20 1 0.03
21 4 0.14
22 9 0.31
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (22 bp):
ATTTACATGCCAACATTAGCTA
Found at i:89426680 original size:37 final size:37
Alignment explanation
Indices: 89426630--89426704 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
89426620 CAATGGCTAG
89426630 TTATAGCCTAAAGATTTACATGCCAACATTAGCTAAT
1 TTATAGCCTAAAGATTTACATGCCAACATTAGCTAAT
89426667 TTATAGCCTAAAGATTTACATGCCAACATTAGCTAAT
1 TTATAGCCTAAAGATTTACATGCCAACATTAGCTAAT
89426704 T
1 T
89426705 AACCTATACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (37 bp):
TTATAGCCTAAAGATTTACATGCCAACATTAGCTAAT
Found at i:89430751 original size:131 final size:131
Alignment explanation
Indices: 89430402--89430769 Score: 348
Period size: 135 Copynumber: 2.8 Consensus size: 131
89430392 TTCACGATTG
* * * * * * * *
89430402 TTTAAAACGAATGCGATATTCGATACTTGATAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTTAAAACGAAGGCAAGACTCGATATTTGACAATTCGCGGAATCGTGCCCTATCGTGTTGGGTTG
* * *
89430467 CAATTTCGCGTTGACTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATATCTTTAAAAAAA
66 CAATTTCTCTTTG-CTCAAAATAATCAAATATCCCTTCAAAATTTCACTCATATCTTT---AAAA
*
89430532 AATTC
127 AATCC
* ** * *
89430537 TTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAAT-GTGTTGGGTT
1 TTTAAAACGAAGGCAAGACTCGATATTTGACAATTCGCGGAATCGTGCCCT-ATCGTGTTGGGTT
* * *
89430601 GCAATTTCTTGTTTGCTCAAAATAATCAAATGA-CCCTTCAAAATTTCACTCGTGTCTTCT-AAA
65 GCAATTTC-TCTTTGCTCAAAATAATCAAAT-ATCCCTTCAAAATTTCACTCATATCTT-TAAAA
89430664 AATCC
127 AATCC
* * * * * *
89430669 TTTAAAACGGAGGCAATACTCGGTGTTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGCAAGACTCGATATTTGACAATTCGCGGAATCGTGCCCTATCGTGTTGGGTTG
** * * *
89430733 TGATTTCTCATTTGCTCAAAACAATCGAATATTCCTT
66 CAATTTCTC-TTTGCTCAAAATAATCAAATATCCCTT
89430770 TAGGTTTTCA
Statistics
Matches: 193, Mismatches: 33, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
130 4 0.02
131 49 0.25
132 35 0.18
135 99 0.51
136 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (131 bp):
TTTAAAACGAAGGCAAGACTCGATATTTGACAATTCGCGGAATCGTGCCCTATCGTGTTGGGTTG
CAATTTCTCTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCACTCATATCTTTAAAAAATC
C
Found at i:89430779 original size:131 final size:131
Alignment explanation
Indices: 89430644--89430895 Score: 283
Period size: 131 Copynumber: 1.9 Consensus size: 131
89430634 CCCTTCAAAA
* * * * *
89430644 TTTCACTCGTGTCTT-CTAAAAATCCTTT-AAAACGGAGGCAATACTCGGTGTTTGACAATTCGG
1 TTTCACGCGTG-CTTACTAAAAA-CCTTTCAAAACGAAGGCAAGACTCGATGTTTGACAATTCGA
* *
89430707 GAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTCAAAACAATCGAATATTCCTTTA
64 GAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTAAAAACAATCGAATATTCCTTTA
89430772 GGT
129 GGT
* * * ** * * *
89430775 TTTCACGCTTGCTTATTAAAAACCTTTCAAAACGAAGGCGAGGTTCGATGTTTGGCGATTTGAGA
1 TTTCACGCGTGCTTACTAAAAACCTTTCAAAACGAAGGCAAGACTCGATGTTTGACAATTCGAGA
* * * * * *
89430840 ATCCTGCCCTATTGTGCTGGGTTGCGCTTTTTCATTTGTTAAAAATAATCGAATAT
66 ATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTAAAAACAATCGAATAT
89430896 CTCTTCGGAA
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
130 8 0.08
131 90 0.92
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (131 bp):
TTTCACGCGTGCTTACTAAAAACCTTTCAAAACGAAGGCAAGACTCGATGTTTGACAATTCGAGA
ATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTAAAAACAATCGAATATTCCTTTAGG
T
Found at i:89448286 original size:8 final size:8
Alignment explanation
Indices: 89448266--89448302 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
89448256 TTATTTCTTT
89448266 TATT-TTA
1 TATTATTA
*
89448273 TGTTATTA
1 TATTATTA
89448281 TATTATTA
1 TATTATTA
89448289 TATTATTA
1 TATTATTA
89448297 TATTAT
1 TATTAT
89448303 ATTATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 3 0.11
8 24 0.89
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (8 bp):
TATTATTA
Found at i:89448286 original size:13 final size:13
Alignment explanation
Indices: 89448284--89448321 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
89448274 GTTATTATAT
89448284 TATTATATTATTA
1 TATTATATTATTA
*
89448297 TATTATATTATAA
1 TATTATATTATTA
*
89448310 TAATA-ATTATTA
1 TATTATATTATTA
89448322 CTTAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 6 0.27
13 16 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:89448289 original size:21 final size:20
Alignment explanation
Indices: 89448265--89448307 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
89448255 TTTATTTCTT
89448265 TTATTTTATGTTATTATATTA
1 TTATTTTAT-TTATTATATTA
*
89448286 TTATATTATTATATTATATTA
1 TTATTTTATT-TATTATATTA
89448307 T
1 T
89448308 AATAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTATTTTATTTATTATATTA
Found at i:89463558 original size:5 final size:5
Alignment explanation
Indices: 89463548--89463581 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
89463538 ACAAGATGTG
89463548 AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAA
89463582 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:89463569 original size:16 final size:16
Alignment explanation
Indices: 89463548--89463581 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
89463538 ACAAGATGTG
89463548 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
89463564 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
89463580 AA
1 AA
89463582 GAACACACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:89466510 original size:54 final size:53
Alignment explanation
Indices: 89466373--89466561 Score: 195
Period size: 54 Copynumber: 3.5 Consensus size: 53
89466363 GGTTTAAGGA
* * * *
89466373 TACCGTGTAAGACCATGCCAAGACATGGCAATTTG-TAAGGTTTC-TAAGGCAAGGA
1 TACCATGTAAGACCATGTCAAGACATGGC-A-TTGATAA-G-TTCATAAGGCAAAGC
* *
89466428 AATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAG-
1 TACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGCAAAGC
* * * * * *
89466482 TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGC
1 TACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAAGC
89466535 TACCATGTAAGACCATGTCAAGACATG
1 TACCATGTAAGACCATGTCAAGACATG
89466562 ACAATGGTAA
Statistics
Matches: 113, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
52 12 0.11
53 30 0.27
54 37 0.33
55 34 0.30
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (53 bp):
TACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAAGC
Found at i:89466573 original size:107 final size:109
Alignment explanation
Indices: 89466378--89466623 Score: 285
Period size: 107 Copynumber: 2.3 Consensus size: 109
89466368 AAGGATACCG
* *
89466378 TGTAAGACCATGCCAAGACATGGCAATTTGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
* *
89466443 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGTCCCA
66 TGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGTCCCA
* * **
89466487 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
* * * *
89466549 ATGTCAAGACATGACAATGGTAAGTTTC-AAAAGG---A-TACCA
65 ATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGTCCCA
* * *
89466589 CGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
89466624 ACCCGTGTAT
Statistics
Matches: 117, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
102 30 0.26
103 3 0.03
106 8 0.07
107 47 0.40
108 6 0.05
109 23 0.20
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (109 bp):
TGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGTCCCA
Found at i:89466834 original size:16 final size:16
Alignment explanation
Indices: 89466813--89466843 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
89466803 ATTAATTTGA
89466813 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
89466829 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
89466844 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:89474115 original size:53 final size:52
Alignment explanation
Indices: 89473944--89474139 Score: 205
Period size: 55 Copynumber: 3.6 Consensus size: 52
89473934 GGATACCGTG
* * * *
89473944 TAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAATCATT
1 TAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGCAAGG-TACCATA
* * * *
89473999 TAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATG
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAGGTACCATA
* *
89474054 TAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGCTACCATA
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGG-TACCATA
* *
89474107 TAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTT
89474140 TCAAAAGGAT
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
52 6 0.05
53 43 0.36
54 8 0.07
55 58 0.49
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (52 bp):
TAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGTACCATA
Found at i:89474138 original size:108 final size:110
Alignment explanation
Indices: 89473942--89474139 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
89473932 AAGGATACCG
* *
89473942 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATTTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATATAAGACCA
*
89474007 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
89474052 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATATAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATATAAGACC
*
89474114 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
89474140 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATATAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:89474404 original size:16 final size:16
Alignment explanation
Indices: 89474383--89474413 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
89474373 ATAAATTTGA
89474383 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
89474399 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
89474414 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:89480295 original size:23 final size:22
Alignment explanation
Indices: 89480231--89480297 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
89480221 TGAGTTGATA
***
89480231 AACGGTAAGCTCCGAAGAGCTG
1 AACGGTAAGCTCATTAGAGCTG
*
89480253 AACGGTAAGCTTATTAGAGCTG
1 AACGGTAAGCTCATTAGAGCTG
*
89480275 AAATGGTAAGCTCA-TACGAGCTG
1 -AACGGTAAGCTCATTA-GAGCTG
89480298 TGGTGAGTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
22 20 0.54
23 17 0.46
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (22 bp):
AACGGTAAGCTCATTAGAGCTG
Found at i:89483735 original size:42 final size:42
Alignment explanation
Indices: 89483676--89483759 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
89483666 GCGCCATACT
89483676 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
1 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
89483718 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
1 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
89483760 GAAATATAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (42 bp):
ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTCA
Found at i:89486625 original size:47 final size:48
Alignment explanation
Indices: 89486507--89486679 Score: 166
Period size: 47 Copynumber: 3.7 Consensus size: 48
89486497 GGATGGTTGA
* *
89486507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGCAAAG
* *
89486555 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-G-ATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGCAA--AG
* * * *
89486600 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAAC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGCAAAG
* *
89486647 GC--CC-AAGTTCATTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACT
89486680 TAGGGGCGGG
Statistics
Matches: 106, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 28 0.26
46 30 0.28
47 34 0.32
48 2 0.02
49 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (48 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGCAAAG
Found at i:89486943 original size:19 final size:20
Alignment explanation
Indices: 89486906--89486943 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
89486896 ATAAGGTGGT
89486906 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
89486926 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
89486944 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:89494098 original size:46 final size:46
Alignment explanation
Indices: 89494045--89494217 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
89494035 TGGTTGAGCA
*
89494045 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
89494091 TCCGAACTCTTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
89494138 TCCGAACTTGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
89494184 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
89494218 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 59 0.59
47 26 0.26
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:89494201 original size:93 final size:93
Alignment explanation
Indices: 89494042--89494212 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
89494032 GAATGGTTGA
* * * *
89494042 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
89494107 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
89494135 GCATCCGAACTTGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
89494200 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
89494213 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:89508988 original size:17 final size:19
Alignment explanation
Indices: 89508955--89508991 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
89508945 AGCCACTTAG
89508955 TTAGTTTTGTGATTTTATT
1 TTAGTTTTGTGATTTTATT
89508974 TTAGTTTT-T-ATTTTATT
1 TTAGTTTTGTGATTTTATT
89508991 T
1 T
89508992 CAATTTAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 8 0.44
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (19 bp):
TTAGTTTTGTGATTTTATT
Found at i:89514289 original size:26 final size:26
Alignment explanation
Indices: 89514260--89514367 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
89514250 TGGTACAAAT
89514260 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
89514286 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89514312 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
89514338 TGATAATGGTTTAGCTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
89514364 TGAT
1 TGAT
89514368 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:89518012 original size:21 final size:21
Alignment explanation
Indices: 89517968--89518133 Score: 113
Period size: 21 Copynumber: 8.0 Consensus size: 21
89517958 TCGTGTTTAC
*
89517968 TTTCTGTTTAGCTC--ATGAG
1 TTTCTGTTTAACTCTTATGAG
* *
89517987 CTTCTGTTTAACTCATATGAG
1 TTTCTGTTTAACTCTTATGAG
* * *
89518008 TTTCTGTTCAACTCTAATGGG
1 TTTCTGTTTAACTCTTATGAG
* * * *
89518029 TTTCCGTTCAGCTCTTTTGAG
1 TTTCTGTTTAACTCTTATGAG
* * *
89518050 CTTCTGTTTAACCCTTATGGG
1 TTTCTGTTTAACTCTTATGAG
* * *
89518071 TTTCT-TTTCAGCTTTTAAGAG
1 TTTCTGTTT-AACTCTTATGAG
* * * *
89518092 CTTCTGTTCAACCCTTATGGG
1 TTTCTGTTTAACTCTTATGAG
*
89518113 TTTCTGTTTAGCTCTTATGAG
1 TTTCTGTTTAACTCTTATGAG
89518134 CTTCAGTTCA
Statistics
Matches: 106, Mismatches: 37, Indels: 6
0.71 0.25 0.04
Matches are distributed among these distances:
19 12 0.11
20 3 0.03
21 89 0.84
22 2 0.02
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.46
Consensus pattern (21 bp):
TTTCTGTTTAACTCTTATGAG
Done.