Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 281 of 318
Found at i:89976152 original size:6 final size:6
Alignment explanation
Indices: 89976137--89976202 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
89976127 ATTCTGTTAC
* * *
89976137 CTGATA CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTGAAT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
89976186 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
89976203 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.44
Consensus pattern (6 bp):
CTGATT
Found at i:89976170 original size:31 final size:31
Alignment explanation
Indices: 89976127--89976193 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
89976117 CTGATTTTTT
* *
89976127 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTCACCTGATACTGAATCTGATTCTG
*
89976158 ATTCTGTCACCTGATTCTGAATCTGATTCTG
1 ATTCTGTCACCTGATACTGAATCTGATTCTG
89976189 ATTCT
1 ATTCT
89976194 AGTTCTGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (31 bp):
ATTCTGTCACCTGATACTGAATCTGATTCTG
Found at i:89976547 original size:7 final size:7
Alignment explanation
Indices: 89976535--89976566 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
89976525 AATTTTTTGG
89976535 ATTTGAA
1 ATTTGAA
89976542 ATTTGAA
1 ATTTGAA
89976549 ATTTGAA
1 ATTTGAA
89976556 ATTTGAA
1 ATTTGAA
89976563 ATTT
1 ATTT
89976567 TACTTATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (7 bp):
ATTTGAA
Found at i:89978784 original size:32 final size:32
Alignment explanation
Indices: 89978744--89978821 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 32
89978734 AAAAGCTGTG
* *
89978744 TGGG-CACACGGGCAAGGCAAATCTGGCTATC
1 TGGGCCACACGGGCAAGGCAAATCTAGCCATC
* * * *
89978775 TGGGCCACACAGGCAAGGCCAATCTAGCCGTG
1 TGGGCCACACGGGCAAGGCAAATCTAGCCATC
89978807 TGGGCCACACGGGCA
1 TGGGCCACACGGGCA
89978822 TGTAAGCCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 4 0.10
32 35 0.90
ACGTcount: A:0.24, C:0.29, G:0.33, T:0.13
Consensus pattern (32 bp):
TGGGCCACACGGGCAAGGCAAATCTAGCCATC
Found at i:89987100 original size:43 final size:43
Alignment explanation
Indices: 89987051--89987159 Score: 184
Period size: 43 Copynumber: 2.6 Consensus size: 43
89987041 GGCCTTCAAA
*
89987051 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
89987094 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
* *
89987137 CCTAGCAGGC-CTCATGCCGGTGA
1 CCTAGCAGGCTATAATGCCGGTGA
89987160 ATGAGTTCAG
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
42 11 0.17
43 52 0.83
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (43 bp):
CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
Found at i:89992617 original size:46 final size:46
Alignment explanation
Indices: 89992550--89993009 Score: 627
Period size: 46 Copynumber: 10.0 Consensus size: 46
89992540 GCTTTCTGAA
*
89992550 ATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
89992596 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
89992642 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
89992688 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
89992734 ATAAAATGTGTAAGACCATGGTTGAAAGAAACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
89992780 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAATAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
89992826 ATAAAATGTGTGAAAGA-CACTGGTTGAAAGATACCATGGCAATAGGAT
1 ATGAAATGTGT--AAGACCA-TGGTTGAAAGATACCATGGCAACATGAT
* ** * *
89992874 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * *
89992920 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
89992966 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
89993010 TCAAAGATAA
Statistics
Matches: 376, Mismatches: 33, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 329 0.88
47 4 0.01
48 42 0.11
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:89993311 original size:16 final size:17
Alignment explanation
Indices: 89993290--89993322 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
89993280 ATGATGGAGC
89993290 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
89993306 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
89993323 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:90008963 original size:19 final size:18
Alignment explanation
Indices: 90008936--90008982 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
90008926 TTATATATTC
90008936 TTTAGAATTTTTTTAAAAA
1 TTTA-AATTTTTTTAAAAA
90008955 TTTATAA-TTTTTTAAAAA
1 TTTA-AATTTTTTTAAAAA
*
90008973 TATAAATTTT
1 TTTAAATTTT
90008983 AGAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 17 0.68
19 6 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
TTTAAATTTTTTTAAAAA
Found at i:90008980 original size:17 final size:18
Alignment explanation
Indices: 90008944--90008982 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
90008934 TCTTTAGAAT
*
90008944 TTTTTTAAAAATTTATAA
1 TTTTTTAAAAATATATAA
90008962 TTTTTTAAAAATATA-AA
1 TTTTTTAAAAATATATAA
90008979 TTTT
1 TTTT
90008983 AGAATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTTTAAAAATATATAA
Found at i:90008996 original size:18 final size:19
Alignment explanation
Indices: 90008973--90009009 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
90008963 TTTTTAAAAA
90008973 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
90008991 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
90009010 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:90011877 original size:6 final size:6
Alignment explanation
Indices: 90011868--90011933 Score: 123
Period size: 6 Copynumber: 11.0 Consensus size: 6
90011858 ATATATATTG
*
90011868 TTATTT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
90011916 TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT
90011934 AAATATTTTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:90012011 original size:23 final size:24
Alignment explanation
Indices: 90011985--90012034 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
90011975 TATAAAAAGT
*
90011985 AATAATATTAATATATTA-TTTTA
1 AATAATAATAATATATTACTTTTA
* * *
90012008 AATAGTAATATTATTTTACTTTTA
1 AATAATAATAATATATTACTTTTA
90012032 AAT
1 AAT
90012035 GTTAATATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
AATAATAATAATATATTACTTTTA
Found at i:90016078 original size:21 final size:21
Alignment explanation
Indices: 90016054--90016098 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
90016044 AAAAAATTAT
* *
90016054 AAAATTTTATAAAATCGT-AAG
1 AAAATTATACAAAAT-GTAAAG
90016075 AAAATTATACAAAATGTAAAG
1 AAAATTATACAAAATGTAAAG
90016096 AAA
1 AAA
90016099 TATAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATTATACAAAATGTAAAG
Found at i:90016079 original size:29 final size:27
Alignment explanation
Indices: 90016001--90016083 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 27
90015991 ATTAGAAAAA
90016001 AAAATATA-AAAATCGT-AAAAATTAT
1 AAAATATATAAAATCGTAAAAAATTAT
*
90016026 AAAATATATAGAAAT-ATAAAAAAATTAT
1 AAAATATATA-AAATCGT-AAAAAATTAT
*
90016054 AAAATTTTATAAAATCGTAAGAAAATTAT
1 AAAA-TATATAAAATCGTAA-AAAATTAT
90016083 A
1 A
90016084 CAAAATGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
25 8 0.17
26 2 0.04
27 4 0.08
28 19 0.40
29 15 0.31
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (27 bp):
AAAATATATAAAATCGTAAAAAATTAT
Found at i:90016399 original size:25 final size:25
Alignment explanation
Indices: 90016361--90016455 Score: 90
Period size: 25 Copynumber: 3.8 Consensus size: 25
90016351 TTCTTTAACG
* *
90016361 ATTTTTATAAAAAAATATAATTTCTA-
1 ATTTTTA-ATAAAAATTTAATTT-TAT
90016387 ATTTTTAAT-AAAATTTAATTTTTAT
1 ATTTTTAATAAAAATTTAA-TTTTAT
*
90016412 ATTTTT-ATTAAAATTTAATATTTAT
1 ATTTTTAATAAAAATTTAAT-TTTAT
*
90016437 ATTTTT-ATTAAAATTTAAT
1 ATTTTTAATAAAAATTTAAT
90016456 ATTTTTTCTA
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
24 13 0.21
25 43 0.68
26 7 0.11
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (25 bp):
ATTTTTAATAAAAATTTAATTTTAT
Found at i:90016434 original size:19 final size:17
Alignment explanation
Indices: 90016425--90016489 Score: 76
Period size: 19 Copynumber: 3.6 Consensus size: 17
90016415 TTTATTAAAA
*
90016425 TTTAATATTTATATTTT
1 TTTAAAATTTATATTTT
90016442 TATTAAAATTTAATATTTT
1 T-TTAAAATTT-ATATTTT
90016461 TTCTAAAATTTATCATTTT
1 TT-TAAAATTTAT-ATTTT
*
90016480 TTTATAATTT
1 TTTAAAATTT
90016490 TTTCTAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.02
18 18 0.43
19 23 0.55
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTAAAATTTATATTTT
Found at i:90016456 original size:25 final size:25
Alignment explanation
Indices: 90016387--90016459 Score: 128
Period size: 25 Copynumber: 2.9 Consensus size: 25
90016377 ATAATTTCTA
* *
90016387 ATTTTTAATAAAATTTAATTTTTAT
1 ATTTTTATTAAAATTTAATATTTAT
90016412 ATTTTTATTAAAATTTAATATTTAT
1 ATTTTTATTAAAATTTAATATTTAT
90016437 ATTTTTATTAAAATTTAATATTT
1 ATTTTTATTAAAATTTAATATTT
90016460 TTTCTAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTTTTATTAAAATTTAATATTTAT
Found at i:90017606 original size:21 final size:21
Alignment explanation
Indices: 90017565--90017604 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
90017555 GGGGTATATA
90017565 ATTAATATATAATAAAATTTC
1 ATTAATATATAATAAAATTTC
*
90017586 ATTAATTTAT-ATAAAATTT
1 ATTAATATATAATAAAATTT
90017605 TCTTTGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTAATATATAATAAAATTTC
Found at i:90025326 original size:37 final size:37
Alignment explanation
Indices: 90025276--90025354 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
90025266 TTATTACGAA
* *
90025276 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
90025313 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
90025350 GTCTT
1 GTCTT
90025355 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:90025542 original size:47 final size:47
Alignment explanation
Indices: 90025473--90025715 Score: 396
Period size: 47 Copynumber: 5.1 Consensus size: 47
90025463 CCCTTCGGGA
* * *
90025473 CTTATCACATTTATGCACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90025520 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90025567 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90025616 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90025665 CTTATCACATATATACACTTTCACATTCATCACATCGGCCTTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90025712 CTTA
1 CTTA
90025716 CTATCATTTC
Statistics
Matches: 186, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
47 96 0.52
49 87 0.47
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90025600 original size:49 final size:48
Alignment explanation
Indices: 90025473--90025715 Score: 386
Period size: 49 Copynumber: 5.1 Consensus size: 48
90025463 CCCTTCGGGA
* * * *
90025473 CTTATCAC-ATTTATGCACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCTATTAGGC
90025520 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCTATTAGGC
90025567 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
90025616 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
90025665 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCT-TTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATCGG-CTATTAGGC
90025712 CTTA
1 CTTA
90025716 CTATCATTTC
Statistics
Matches: 186, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
47 91 0.49
48 1 0.01
49 94 0.51
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:90031270 original size:58 final size:58
Alignment explanation
Indices: 90031177--90031286 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
90031167 ATATACTTCA
* * * **
90031177 ATGCTCACACAGAGCTACGGTAGTCTACAATTTATGTGGAATTACTACCAATACATCC
1 ATGCTCACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTACTACCAATACATCC
* *
90031235 ATGCTTACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTGCTACCAAT
1 ATGCTCACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTACTACCAAT
90031287 CACTTACCTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (58 bp):
ATGCTCACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTACTACCAATACATCC
Found at i:90031327 original size:63 final size:57
Alignment explanation
Indices: 90031177--90031328 Score: 151
Period size: 58 Copynumber: 2.5 Consensus size: 57
90031167 ATATACTTCA
* **
90031177 ATGCTCACACAGAGCTACGGTAGTCTACAATTTATGTGGAATTACTACCAATACATCC
1 ATGCTCACACAGAGCTACGGTAGTC-ACAACTTATGCAGAATTACTACCAATACATCC
* * * *
90031235 ATGCTTACACAGAGCTACGGTAGCCCACAACTTATGCAGAATTGCTACCAATCACTTACCTCG
1 ATGCTCACACAGAGCTACGGTAG-TCACAACTTATGCAGAATTACTACCAAT-AC--A--TCC
* *
90031298 ATGCTCACAAAGCGCTACGGTAGTTCACAAC
1 ATGCTCACACAGAGCTACGGTAG-TCACAAC
90031329 ATATACGACT
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
58 44 0.58
59 3 0.04
61 1 0.01
63 28 0.37
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (57 bp):
ATGCTCACACAGAGCTACGGTAGTCACAACTTATGCAGAATTACTACCAATACATCC
Found at i:90032093 original size:36 final size:36
Alignment explanation
Indices: 90032053--90032126 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
90032043 AACCATGTCC
90032053 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
1 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
90032089 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
1 AAAAATCTACTAACTTTCAAAATTTCAACATATACT
90032125 AA
1 AA
90032127 GTAGTATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (36 bp):
AAAAATCTACTAACTTTCAAAATTTCAACATATACT
Found at i:90032346 original size:8 final size:8
Alignment explanation
Indices: 90032309--90032369 Score: 90
Period size: 8 Copynumber: 7.8 Consensus size: 8
90032299 TGTTTTTCAC
90032309 ATATATATA
1 ATATA-ATA
90032318 ATATAAT-
1 ATATAATA
90032325 ATAT-ATA
1 ATATAATA
*
90032332 ATGTAATA
1 ATATAATA
90032340 ATATAATA
1 ATATAATA
90032348 ATATAATA
1 ATATAATA
90032356 ATATAATA
1 ATATAATA
90032364 ATATAA
1 ATATAA
90032370 ATTGATATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
6 2 0.04
7 7 0.15
8 34 0.71
9 5 0.10
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (8 bp):
ATATAATA
Found at i:90036141 original size:42 final size:41
Alignment explanation
Indices: 90036089--90036239 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 41
90036079 CTCTAACGAT
* * *
90036089 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAG
1 CTTCTATTTAAC-CTTATGGGTTTCCATTCAGCTCTTTTGAG
* ** *
90036131 TTTCTATTTAACCTTGATGGGTTTCTGTTCTGCTCTTTTGAG
1 CTTCTATTTAACCTT-ATGGGTTTCCATTCAGCTCTTTTGAG
* * *
90036173 CTTCTATTTAACCCTTATGGGTTTTCATTCAGCTCTTATGAA
1 CTTCTATTTAA-CCTTATGGGTTTCCATTCAGCTCTTTTGAG
* *
90036215 CTTCCATTCAACCCTTATGGGTTTC
1 CTTCTATTTAA-CCTTATGGGTTTC
90036240 TGTTTAGCAC
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.02
42 84 0.93
43 4 0.04
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (41 bp):
CTTCTATTTAACCTTATGGGTTTCCATTCAGCTCTTTTGAG
Found at i:90036209 original size:84 final size:84
Alignment explanation
Indices: 90036089--90036243 Score: 204
Period size: 84 Copynumber: 1.8 Consensus size: 84
90036079 CTCTAACGAT
* * * ** * *
90036089 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAGTTTCTATTTAA-CCTTGATGGGT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCCTT-ATGGGT
90036153 TTCTGTTCTGCTCTTTTGAG
65 TTCTGTTCTGCTCTTTTGAG
* * *
90036173 CTTCTATTTAACCCTTATGGGTTTTCATTCAGCTCTTATGAACTTCCATTCAACCCTTATGGGTT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCCTTATGGGTT
90036238 TCTGTT
66 TCTGTT
90036244 TAGCACTTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
84 56 0.93
85 4 0.07
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (84 bp):
CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCCTTATGGGTT
TCTGTTCTGCTCTTTTGAG
Found at i:90036253 original size:42 final size:42
Alignment explanation
Indices: 90036119--90036264 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
90036109 GTTTCCATTC
* * * *
90036119 AGCTCTTTTGAGTTTCTATTTAA-CCTTGATGGGTTTCTGTTCT
1 AGCTCTTATGAGCTTCCATTCAACCCTT-ATGGGTTTCTGTT-T
* * * * *
90036162 -GCTCTTTTGAGCTTCTATTTAACCCTTATGGGTTT-TCATTC
1 AGCTCTTATGAGCTTCCATTCAACCCTTATGGGTTTCT-GTTT
*
90036203 AGCTCTTATGAACTTCCATTCAACCCTTATGGGTTTCTGTTT
1 AGCTCTTATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTT
* *
90036245 AGCACTTATGTGCTTCCATT
1 AGCTCTTATGAGCTTCCATT
90036265 TAGCCTTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 81 0.93
43 5 0.06
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTT
Found at i:90036260 original size:84 final size:84
Alignment explanation
Indices: 90036089--90036266 Score: 198
Period size: 84 Copynumber: 2.1 Consensus size: 84
90036079 CTCTAACGAT
* * * ** * *
90036089 CTTCTGTTTAACTCATATGAGTTTCCATTCAGCTCTTTTGAGTTTCTATTTAACCTTGATGGGTT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCTTGATGGGTT
* *
90036154 TCTGTTCTGCTCTTTTGAG
66 TCTGTTCTGCACTTATGAG
* * *
90036173 CTTCTATTTAACCCTTATGGGTTTTCATTCAGCTCTTATGAACTTCCATTCAACCCTT-ATGGGT
1 CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAA-CCTTGATGGGT
*
90036237 TTCTGTT-TAGCACTTATGTG
65 TTCTGTTCT-GCACTTATGAG
*
90036257 CTTCCATTTA
1 CTTCTATTTA
90036267 GCCTTCGAGC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
83 1 0.01
84 73 0.94
85 4 0.05
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (84 bp):
CTTCTATTTAACCCATATGAGTTTCCATTCAGCTCTTATGAACTTCCATTCAACCTTGATGGGTT
TCTGTTCTGCACTTATGAG
Found at i:90042298 original size:17 final size:16
Alignment explanation
Indices: 90042269--90042307 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
90042259 GTTTATTTTT
*
90042269 TATTTATAATTATTAA
1 TATTAATAATTATTAA
90042285 TATTAATAATTTATTAA
1 TATTAATAA-TTATTAA
*
90042302 TTTTAA
1 TATTAA
90042308 AAAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTAATAATTATTAA
Found at i:90047188 original size:2 final size:2
Alignment explanation
Indices: 90047181--90047218 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
90047171 AAAGAGCGAC
90047181 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
90047219 TGTGTGAGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:90048173 original size:17 final size:19
Alignment explanation
Indices: 90048151--90048196 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
90048141 ATAATAGAAA
90048151 TAAAAAGTTATTTTT-A-T
1 TAAAAAGTTATTTTTAAGT
*
90048168 TAAAAA-TATTTTTTTAAGT
1 TAAAAAGT-TATTTTTAAGT
90048187 TAAAAAGTTA
1 TAAAAAGTTA
90048197 AAAATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
16 1 0.04
17 12 0.52
18 1 0.04
19 8 0.35
20 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (19 bp):
TAAAAAGTTATTTTTAAGT
Found at i:90048528 original size:3 final size:3
Alignment explanation
Indices: 90048520--90048561 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
90048510 CAAATCAAAC
*
90048520 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
90048562 GTCGTCGTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:90050327 original size:20 final size:20
Alignment explanation
Indices: 90050302--90050421 Score: 118
Period size: 20 Copynumber: 6.0 Consensus size: 20
90050292 TTGTACAAGA
90050302 TTGCACTTCGGTGTCTCTAT
1 TTGCACTTCGGTGTCTCTAT
* **
90050322 TTGCACTTCGGTGCCTCTGC
1 TTGCACTTCGGTGTCTCTAT
* * *
90050342 TTACACTTCGATGTCTCTGT
1 TTGCACTTCGGTGTCTCTAT
*
90050362 TTGCACTTCGGTGTCTCAGAT
1 TTGCACTTCGGTGTCTC-TAT
* *
90050383 TT-CACTTCGATGTCTCTGT
1 TTGCACTTCGGTGTCTCTAT
*
90050402 TTGCACTAT-GGTGCCTCTAT
1 TTGCACT-TCGGTGTCTCTAT
90050422 ATAGCATTCT
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
19 3 0.04
20 73 0.91
21 4 0.05
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.42
Consensus pattern (20 bp):
TTGCACTTCGGTGTCTCTAT
Found at i:90050349 original size:40 final size:40
Alignment explanation
Indices: 90050300--90050419 Score: 161
Period size: 40 Copynumber: 3.0 Consensus size: 40
90050290 ACTTGTACAA
* * *
90050300 GATTGCACTTCGGTGTCTCTATTTGCACTTCGGTGCCTCT
1 GATTACACTTCGATGTCTCTGTTTGCACTTCGGTGCCTCT
* * *
90050340 GCTTACACTTCGATGTCTCTGTTTGCACTTCGGTGTCTCA
1 GATTACACTTCGATGTCTCTGTTTGCACTTCGGTGCCTCT
*
90050380 GATTTCACTTCGATGTCTCTGTTTGCACTAT-GGTGCCTCT
1 GATTACACTTCGATGTCTCTGTTTGCACT-TCGGTGCCTCT
90050420 ATATAGCATT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 68 0.99
41 1 0.01
ACGTcount: A:0.12, C:0.27, G:0.21, T:0.41
Consensus pattern (40 bp):
GATTACACTTCGATGTCTCTGTTTGCACTTCGGTGCCTCT
Found at i:90052240 original size:30 final size:30
Alignment explanation
Indices: 90052204--90052264 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
90052194 TTCCCGAGCC
90052204 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
90052234 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
90052264 T
1 T
90052265 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:90052990 original size:49 final size:50
Alignment explanation
Indices: 90052910--90053155 Score: 298
Period size: 49 Copynumber: 4.9 Consensus size: 50
90052900 AGCTATTGTG
* *
90052910 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
90052960 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
90053010 CGATCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
90053060 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
90053110 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
90053156 GCTTCGGCTA
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 81 0.49
50 47 0.29
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:90055939 original size:16 final size:15
Alignment explanation
Indices: 90055901--90055939 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
90055891 TGGATTCTCG
*
90055901 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
90055916 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
90055931 TATTCTTGG
1 TA-TCTTGG
90055940 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:90058027 original size:30 final size:29
Alignment explanation
Indices: 90057980--90058038 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
90057970 TTCCCGAGCC
90057980 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAGTGTAATTATGCAAAAGTT
* *
90058009 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAGT-GTAATTATGCAAAAGTT
90058039 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAGTGTAATTATGCAAAAGTT
Found at i:90058759 original size:49 final size:50
Alignment explanation
Indices: 90058679--90058924 Score: 268
Period size: 49 Copynumber: 4.9 Consensus size: 50
90058669 AGCTATTGTG
* *
90058679 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * *
90058729 -GGTCGCATGTGTAGTATTAAGTGTAGGCTACTATGCGTACCTGAAAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
90058779 CA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
90058829 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
* *
90058879 -GGT-AGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCA-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
90058925 GCTTCGGCTA
Statistics
Matches: 163, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
48 1 0.01
49 81 0.50
50 47 0.29
51 34 0.21
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:90058816 original size:28 final size:28
Alignment explanation
Indices: 90058784--90058867 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
90058774 AACTTCAATC
90058784 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
90058812 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
90058834 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
90058862 ACGTGT
1 ACGTGT
90058868 ACCGAATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:90058923 original size:99 final size:100
Alignment explanation
Indices: 90058682--90058924 Score: 287
Period size: 100 Copynumber: 2.4 Consensus size: 100
90058672 TATTGTGAGG
* * * *
90058682 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTATT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
90058747 AAGTGTAGGCTACTATGCGTACCTGAAAACTTCAA
66 AAGTGCAGGCTACTACGCGTACCTGAAAACTTCAA
* * ** *
90058782 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* **
90058847 TAAGTGCAGGCTACTACGTGTACC-GAATAA-TT-GG
65 TAAGTGCAGGCTACTACGCGTACCTGAA-AACTTCAA
* *
90058881 T-AGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCA-CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
90058925 GCTTCGGCTA
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
98 1 0.01
99 37 0.30
100 48 0.39
101 37 0.30
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCTGAAAACTTCAA
Found at i:90064227 original size:62 final size:62
Alignment explanation
Indices: 90064130--90064253 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
90064120 ACGACCATGT
* *
90064130 TTCCCTACTTCGAATGCCCACACAGCTTGGCCACACGACCGTGTGACCCCTGCAGTGTTGAA
1 TTCCCTACTTCGAATGCCCACACACCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
* *
90064192 TTCCCTACTTCGAATGCCCACATACCTTGGCCACACGATCGTGTGACCCCTACAGTGTTGAA
1 TTCCCTACTTCGAATGCCCACACACCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
90064254 AATTTTCATT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (62 bp):
TTCCCTACTTCGAATGCCCACACACCTTGGCCACACGACCGTGTGACCCCTACAGTGTTGAA
Found at i:90067962 original size:34 final size:34
Alignment explanation
Indices: 90067879--90067962 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 34
90067869 AACAAACTTG
* * * *
90067879 TTCTACCAACTTAACACGACACATGGGTAGTTAC
1 TTCTACCAACTTAATACGACACATGGGCAATCAC
90067913 TAT-TCACCAACTTAATACGACACATGGGCAATCAC
1 T-TCT-ACCAACTTAATACGACACATGGGCAATCAC
*
90067948 TTCTGCCAACTTAAT
1 TTCTACCAACTTAAT
90067963 CATAACTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
34 13 0.31
35 29 0.69
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (34 bp):
TTCTACCAACTTAATACGACACATGGGCAATCAC
Found at i:90071096 original size:26 final size:26
Alignment explanation
Indices: 90071048--90071097 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
90071038 TTTCATCCCT
**
90071048 ATTTTACCCTCAGTAAATTTTTGACG
1 ATTTTACCCTCAGTAAAAATTTGACG
**
90071074 ATTTTACCCTTGGTAAAAATTTGA
1 ATTTTACCCTCAGTAAAAATTTGA
90071098 GAAAATATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTCAGTAAAAATTTGACG
Found at i:90072569 original size:25 final size:24
Alignment explanation
Indices: 90072536--90072584 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
90072526 GAGGGATTTT
*
90072536 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAAAATTAATATAA
90072560 TTATATTTATTTAAAATTAATATAA
1 TTAT-TTTATTTAAAATTAATATAA
90072585 AATTTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAAAATTAATATAA
Found at i:90072607 original size:18 final size:18
Alignment explanation
Indices: 90072558--90072607 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
90072548 ATATTAATAT
90072558 AATT-ATATT-TATTTAA
1 AATTAATATTATATTTAA
* *
90072574 AATTAATATAAAATTTAA
1 AATTAATATTATATTTAA
* *
90072592 ATTTATTATTATATTT
1 AATTAATATTATATTT
90072608 TTTTGAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 4 0.15
17 4 0.15
18 18 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTAATATTATATTTAA
Found at i:90072976 original size:3 final size:3
Alignment explanation
Indices: 90072920--90072961 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
90072910 TAGTTTACTC
90072920 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
90072962 ATTTTTCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:90075660 original size:24 final size:24
Alignment explanation
Indices: 90075633--90075689 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
90075623 AAAGGGTTAA
90075633 ATAACTATTTGAGACATGAATTTG
1 ATAACTATTTGAGACATGAATTTG
*
90075657 ATAACTATTTGAGGCATGAATTTG
1 ATAACTATTTGAGACATGAATTTG
90075681 ATAACTATT
1 ATAACTATT
90075690 CTCATATTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (24 bp):
ATAACTATTTGAGACATGAATTTG
Found at i:90088341 original size:16 final size:17
Alignment explanation
Indices: 90088322--90088355 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
90088312 ATATATATTT
*
90088322 TTATTTT-ATTTTTTAA
1 TTATTTTAAATTTTTAA
90088338 TTATTTTAAATTTTTAA
1 TTATTTTAAATTTTTAA
90088355 T
1 T
90088356 ATAACCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTAAATTTTTAA
Found at i:90088428 original size:21 final size:22
Alignment explanation
Indices: 90088402--90088460 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
90088392 GTTTTAAGAA
*
90088402 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
90088423 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
90088445 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
90088461 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:90088475 original size:26 final size:24
Alignment explanation
Indices: 90088431--90088480 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
90088421 ATTTGTTTTA
*
90088431 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
90088455 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
90088481 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:90091837 original size:67 final size:68
Alignment explanation
Indices: 90091727--90091980 Score: 208
Period size: 67 Copynumber: 3.8 Consensus size: 68
90091717 AAAGAGGTTA
* * * ** *** *
90091727 TAAGGTGTAAGACCATAGCTCGGCTATGACAATCAGTACAGTCCACCAGGATGTTAAATAAAAGG
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
90091792 GAT
66 GAT
* * * ***
90091795 TAAGGGGTAATACCA-AGCTCAGCTATGGCAACCAGTGTAGTCCACTAGGACCCTAAACATGGGG
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
90091859 GAT
66 GAT
* * ** ** **
90091862 TAAGGTGTAAGACCATAACTCAGCTATAGCAACCAGTGTAGTCTGCCAGGACATTAAACATGA-G
1 TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
90091926 GAT
66 GAT
* * * * * * *
90091929 TACGGTGTAAGGCCATAACTC-GAATTTGGCAACTAGTGTAGTCCTCCAGGAC
1 TAAGGTGTAAGACCATAGCTCAG-CTATGGCAACCAGTGTAGTCCACCAGGAC
90091981 AATAAACACG
Statistics
Matches: 151, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
66 1 0.01
67 98 0.65
68 52 0.34
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (68 bp):
TAAGGTGTAAGACCATAGCTCAGCTATGGCAACCAGTGTAGTCCACCAGGACCCTAAACAAAAGG
GAT
Found at i:90115309 original size:9 final size:9
Alignment explanation
Indices: 90115297--90115357 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
90115287 TTTTTTTCTT
90115297 TTTTTATAA
1 TTTTTATAA
90115306 TTTTTAAATAA
1 TTTTT--ATAA
*
90115317 TTTTTAATAT
1 TTTTT-ATAA
90115327 TTTTTATAA
1 TTTTTATAA
*
90115336 TTTCTA-AA
1 TTTTTATAA
*
90115344 CTTTTTATAG
1 -TTTTTATAA
90115354 TTTT
1 TTTT
90115358 AGATTTAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.05
9 22 0.51
10 10 0.23
11 9 0.21
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:90115309 original size:10 final size:10
Alignment explanation
Indices: 90115296--90115338 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
90115286 TTTTTTTTCT
*
90115296 TTTTTTATAA
1 TTTTTAATAA
90115306 TTTTTAAATAA
1 TTTTT-AATAA
90115317 TTTTTAAT-A
1 TTTTTAATAA
*
90115326 TTTTTTATAA
1 TTTTTAATAA
90115336 TTT
1 TTT
90115339 CTAAACTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.28
10 12 0.41
11 9 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:90116596 original size:22 final size:22
Alignment explanation
Indices: 90116571--90116612 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
90116561 AAATATTATA
*
90116571 ATATCATGTAATATTATATTTT
1 ATATCATATAATATTATATTTT
* *
90116593 ATATTATATAATGTTATATT
1 ATATCATATAATATTATATT
90116613 AGTATATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
ATATCATATAATATTATATTTT
Found at i:90116611 original size:15 final size:15
Alignment explanation
Indices: 90116571--90116628 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
90116561 AAATATTATA
* *
90116571 ATATCATGTAATATT
1 ATATAATGTTATATT
90116586 ATAT--T-TTATATT
1 ATATAATGTTATATT
90116598 ATATAATGTTATATT
1 ATATAATGTTATATT
*
90116613 AGTATATATTTTATAT
1 A-TATA-ATGTTATAT
90116629 GAAATCATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 10 0.28
13 1 0.03
14 1 0.03
15 12 0.33
16 4 0.11
17 8 0.22
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (15 bp):
ATATAATGTTATATT
Found at i:90116747 original size:16 final size:17
Alignment explanation
Indices: 90116728--90116760 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
90116718 TAGTTTATAG
90116728 ATTTTA-ATAATTATTA
1 ATTTTATATAATTATTA
*
90116744 ATTTTATATATTTATTA
1 ATTTTATATAATTATTA
90116761 TACATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTATATAATTATTA
Found at i:90117542 original size:18 final size:18
Alignment explanation
Indices: 90117519--90117557 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
90117509 TTATAAAGAA
90117519 AAACTTACGTCTTTACAT
1 AAACTTACGTCTTTACAT
** *
90117537 AAACTTGTGTTTTTACAT
1 AAACTTACGTCTTTACAT
90117555 AAA
1 AAA
90117558 AAATTAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (18 bp):
AAACTTACGTCTTTACAT
Found at i:90118280 original size:5 final size:6
Alignment explanation
Indices: 90118267--90118302 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
90118257 ATAATTTAAT
90118267 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAAT
90118303 TTTACAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 22 0.79
8 6 0.21
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:90118289 original size:14 final size:14
Alignment explanation
Indices: 90118270--90118296 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90118260 ATTTAATAAA
90118270 TAAAAATAAAAATC
1 TAAAAATAAAAATC
90118284 TAAAAATAAAAAT
1 TAAAAATAAAAAT
90118297 AAAAATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAATAAAAATC
Found at i:90118301 original size:21 final size:22
Alignment explanation
Indices: 90118244--90118301 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 22
90118234 CAACCCAATC
*
90118244 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
90118269 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
90118289 ATAAAAATAAAAA
1 ATAAAAATAAAAA
90118302 TTTTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 10 0.32
21 10 0.32
22 3 0.10
24 1 0.03
25 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:90118323 original size:9 final size:9
Alignment explanation
Indices: 90118311--90118387 Score: 93
Period size: 9 Copynumber: 8.6 Consensus size: 9
90118301 ATTTTACAAA
*
90118311 TAATTCCGT
1 TAATTCGGT
*
90118320 TAATTTGGT
1 TAATTCGGT
90118329 TAATTCGGT
1 TAATTCGGT
* *
90118338 TAATTTGGA
1 TAATTCGGT
90118347 TAATTCAGG-
1 TAATTC-GGT
*
90118356 TAATTCAGT
1 TAATTCGGT
90118365 TAATTCGGT
1 TAATTCGGT
90118374 TAATTCGGT
1 TAATTCGGT
90118383 TAATT
1 TAATT
90118388 TTATACTTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
8 1 0.02
9 55 0.95
10 2 0.03
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:90119495 original size:16 final size:16
Alignment explanation
Indices: 90119471--90119504 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
90119461 ATTTCATTAA
90119471 ATAAAAAATTAAATAT
1 ATAAAAAATTAAATAT
*
90119487 ATAATAAATTAAATAT
1 ATAAAAAATTAAATAT
90119503 AT
1 AT
90119505 TTAAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAAAAAATTAAATAT
Found at i:90121581 original size:115 final size:115
Alignment explanation
Indices: 90121443--90121820 Score: 580
Period size: 115 Copynumber: 3.3 Consensus size: 115
90121433 CCAGATTGAT
* *
90121443 TCTGGTTTAGATTATCATATTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
90121508 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* *
90121558 TCTAGTTTAGATTATCAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
*
90121623 CTTTCGTATTTAGAATTTTTGGGATTTAA-TTTTTCATATCCGGACTGGG
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
* * * * *
90121672 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGCG
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
* * * * *
90121737 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATA-CGCAGACTGGT
66 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATC-CGGACTGGG
* *
90121787 TTTGGTTTAGAATATCATATTTTTTATTTGAAGT
1 TCTGGTTTAGATTATCATATTTTTTATTTGAAGT
90121821 TTTCTGAATG
Statistics
Matches: 239, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
114 105 0.44
115 134 0.56
ACGTcount: A:0.22, C:0.10, G:0.20, T:0.48
Consensus pattern (115 bp):
TCTGGTTTAGATTATCATATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCG
CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGG
Found at i:90121864 original size:229 final size:229
Alignment explanation
Indices: 90121443--90121871 Score: 576
Period size: 229 Copynumber: 1.9 Consensus size: 229
90121433 CCAGATTGAT
* * * * *
90121443 TCTGGTTTAGATTATCATATTTTTTATTTGGAGTATCTAGGATTTGGATTTGTTAAGCTTAGGCG
1 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGCG
* * * * *
90121508 CTTTCGTGTTTAGAATTTTTGGGATTTAATTTTTTCATATCCGGACTGGGTCTAGTTTAGATTAT
66 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATATCCAGACTGGGTCTAGTTTAGAATAT
* * * *
90121573 CAAATTTTTTATTTGAAGTATCTTGGATTTGGATTTGTTAAGCTTAGGCGCTTTCGTATTTAGAA
131 CAAATTTTTTATTTGAAGTATCTTGAATGTGGATTTGTTAAGCTCAGGCGCTTTCATATTTAGAA
90121638 TTTTTGGGATTTAATTTTTCATATCCGGACTGGG
196 TTTTTGGGATTTAATTTTTCATATCCGGACTGGG
* *
90121672 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTTTCTTGGATTTGGATTTGTTAAACTTAAGCG
1 TCTGGTTTAGATTATCATACTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGCG
* * *
90121737 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATA-CGCAGACTGGTTTTGGTTTAGAATA
66 CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATATC-CAGACTGGGTCTAGTTTAGAATA
* * * * **
90121801 TCATATTTTTTATTTGAAGT-TTTCTGAATGTGGACTTTTTTAATCTCAGGTTC-TTCATATTTA
130 TCAAATTTTTTATTTGAAGTATCT-TGAATGTGGA-TTTGTTAAGCTCAGGCGCTTTCATATTTA
*
90121864 GATTTTTT
193 GAATTTTT
90121872 AGTTTTGAAT
Statistics
Matches: 171, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
228 3 0.02
229 155 0.91
230 13 0.08
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (229 bp):
TCTGGTTTAGATTATCATACTTCTTATTTGAAGTATCTAGGATTTGGATTTGTTAAACTTAAGCG
CTTCCATGTTTAGAATTTTTGGGATTTAATTTTTTAATATCCAGACTGGGTCTAGTTTAGAATAT
CAAATTTTTTATTTGAAGTATCTTGAATGTGGATTTGTTAAGCTCAGGCGCTTTCATATTTAGAA
TTTTTGGGATTTAATTTTTCATATCCGGACTGGG
Found at i:90125636 original size:34 final size:34
Alignment explanation
Indices: 90125588--90125658 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
90125578 GTTAACTTAG
* *
90125588 TGTTTTGCAAATGATGAAATATTCTACGGTTGAA
1 TGTTGTGCAAATGATGAAATATTCTACGGCTGAA
* *
90125622 TGTTGTGCAAATGATGAATTATTCTATGGCTGAA
1 TGTTGTGCAAATGATGAAATATTCTACGGCTGAA
90125656 TGT
1 TGT
90125659 AGATGTATCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (34 bp):
TGTTGTGCAAATGATGAAATATTCTACGGCTGAA
Found at i:90126036 original size:22 final size:22
Alignment explanation
Indices: 90125993--90126042 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
90125983 GTGCTTATGG
*
90125993 ATATGAAAGCCCTTTATAGGTA
1 ATATGAAAGCCCTTGATAGGTA
*
90126015 GTATGAAAGCCCTTGA-AGGGTA
1 ATATGAAAGCCCTTGATA-GGTA
90126037 ATATGA
1 ATATGA
90126043 GATTTTGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (22 bp):
ATATGAAAGCCCTTGATAGGTA
Found at i:90128298 original size:36 final size:38
Alignment explanation
Indices: 90128223--90128305 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
90128213 AATTGTTTTT
*
90128223 CAGAATGTTTTCGGTTGAGGAAAATCCTCTGACTGTTG
1 CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
*
90128261 CAGAATATTTTTGGTTGAGGAAAAT-C-CTGACTGTTG
1 CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
90128297 CAGAATATT
1 CAGAATATT
90128306 AATCCTCTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 19 0.44
37 1 0.02
38 23 0.53
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (38 bp):
CAGAATATTTTCGGTTGAGGAAAATCCTCTGACTGTTG
Found at i:90130480 original size:29 final size:26
Alignment explanation
Indices: 90130448--90130500 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
90130438 CAACGTCAAT
*
90130448 AAATAATTCAAAAGTTATAAAATAAATTA
1 AAATAAATCAAAA-TTA-AAAA-AAATTA
90130477 AAATAAATCAAAATTAAAAAAAAT
1 AAATAAATCAAAATTAAAAAAAAT
90130501 ATGAAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 4 0.17
28 3 0.13
29 12 0.52
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (26 bp):
AAATAAATCAAAATTAAAAAAAATTA
Found at i:90132565 original size:23 final size:23
Alignment explanation
Indices: 90132539--90132594 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
90132529 TATTTATATT
90132539 ATTTTTA-ATTTAATATTTAATAA
1 ATTTTTATATTT-ATATTTAATAA
* * *
90132562 ATTTATATATTTTTATTTATTAA
1 ATTTTTATATTTATATTTAATAA
*
90132585 AATTTTATAT
1 ATTTTTATAT
90132595 ATAGTCATCT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATTTTTATATTTATATTTAATAA
Found at i:90134213 original size:13 final size:12
Alignment explanation
Indices: 90134157--90134217 Score: 56
Period size: 13 Copynumber: 5.2 Consensus size: 12
90134147 ACCTATTGAA
*
90134157 ATAT-TACATAA
1 ATATATACATAT
90134168 ATATATAC-T-T
1 ATATATACATAT
* *
90134178 ATATATACTAGAG
1 ATATATAC-ATAT
90134191 ATATATACATAT
1 ATATATACATAT
90134203 ATATATAACATAT
1 ATATAT-ACATAT
90134216 AT
1 AT
90134218 TAAGATTAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 8 0.20
11 5 0.12
12 11 0.28
13 16 0.40
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (12 bp):
ATATATACATAT
Found at i:90134215 original size:21 final size:20
Alignment explanation
Indices: 90134164--90134217 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 20
90134154 GAAATATTAC
*
90134164 ATAAATATATACTTATATAT
1 ATAAATATATACATATATAT
90134184 ACTAGAGATATATACATATATAT
1 A-TA-A-ATATATACATATATAT
90134207 ATAACATATAT
1 ATAA-ATATAT
90134218 TAAGATTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 1 0.03
21 9 0.31
22 3 0.10
23 16 0.55
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (20 bp):
ATAAATATATACATATATAT
Found at i:90150999 original size:21 final size:21
Alignment explanation
Indices: 90150975--90151014 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
90150965 GGAATAAATC
90150975 GAAAAC-TTAGAAAATTTTCCA
1 GAAAACATT-GAAAATTTTCCA
90150996 GAAAACATTGAAAATTTTC
1 GAAAACATTGAAAATTTTC
90151015 AACACTGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
GAAAACATTGAAAATTTTCCA
Found at i:90152449 original size:25 final size:24
Alignment explanation
Indices: 90152420--90152499 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 24
90152410 TCCTGTACAT
90152420 GTATGGTCATACGAGCTGTGAATCG
1 GTATGGTCATACGAGCTGT-AATCG
* *
90152445 ATATGGTTACT-CGAGCTGTAGATCG
1 GTATGGTCA-TACGAGCTGTA-ATCG
*
90152470 GTATGCTC-TCACGAGCTGTAAATCG
1 GTATGGTCAT-ACGAGCTGT-AATCG
90152495 GTATG
1 GTATG
90152500 CTTTCATGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 41 0.91
26 2 0.04
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (24 bp):
GTATGGTCATACGAGCTGTAATCG
Found at i:90152500 original size:25 final size:24
Alignment explanation
Indices: 90152430--90152513 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
90152420 GTATGGTCAT
* * *
90152430 ACGAGCTGTGAATCGATATGGTTAC
1 ACGAGCTGTAAATCGGTATGCTT-C
* *
90152455 TCGAGCTGTAGATCGGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCT-TC
90152480 ACGAGCTGTAAATCGGTATGCTTTC
1 ACGAGCTGTAAATCGGTATGC-TTC
*
90152505 ATGAGCTGT
1 ACGAGCTGT
90152514 GGGTCAGAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 47 0.96
26 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (24 bp):
ACGAGCTGTAAATCGGTATGCTTC
Found at i:90154317 original size:13 final size:14
Alignment explanation
Indices: 90154288--90154323 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
90154278 AATTTTTAAT
90154288 AAGATAAAAATATTA
1 AAGA-AAAAATATTA
90154303 AAGAAAAAATA-TA
1 AAGAAAAAATATTA
90154316 AAGAAAAA
1 AAGAAAAA
90154324 GAAAATGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.48
14 7 0.33
15 4 0.19
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (14 bp):
AAGAAAAAATATTA
Found at i:90159274 original size:23 final size:23
Alignment explanation
Indices: 90159242--90159285 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
90159232 AAAAATTGAA
*
90159242 ATAAACAAAT-AAAATAGAAATTT
1 ATAAAAAAATGAAAATA-AAATTT
90159265 ATAAAAAAATGAAAATAAAAT
1 ATAAAAAAATGAAAATAAAAT
90159286 GAATTTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (23 bp):
ATAAAAAAATGAAAATAAAATTT
Found at i:90159296 original size:29 final size:29
Alignment explanation
Indices: 90159248--90159305 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
90159238 TGAAATAAAC
90159248 AAATAAAATAGAAATTTATAAAAAAATGA
1 AAATAAAATAGAAATTTATAAAAAAATGA
90159277 AAATAAAAT-G-AATTTATATATAAAAATGA
1 AAATAAAATAGAAATTTATA-A-AAAAATGA
90159306 TAAGTAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.30
28 2 0.07
29 17 0.63
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (29 bp):
AAATAAAATAGAAATTTATAAAAAAATGA
Found at i:90159372 original size:3 final size:3
Alignment explanation
Indices: 90159364--90159396 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
90159354 TAATAGTATG
90159364 ATA ATA ATA ATA ATA GA-A ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
90159397 CATCTAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 1 0.04
3 26 0.93
4 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:90161219 original size:13 final size:13
Alignment explanation
Indices: 90161201--90161262 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
90161191 AGTTTGGCAA
90161201 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
90161214 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* * *
90161227 TGATGTGGAAAAG
1 TGCTTTTGAAAAG
*
90161240 TGTTTTTGAGAAA-
1 TGCTTTTGA-AAAG
90161253 TGCTTTTGAA
1 TGCTTTTGAA
90161263 CAATTTGGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
12 1 0.02
13 37 0.90
14 3 0.07
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:90162499 original size:28 final size:28
Alignment explanation
Indices: 90162467--90162522 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
90162457 GGGATATTTT
90162467 AGAGATTTTAGCTTTAGAGTGTTCGGAA
1 AGAGATTTTAGCTTTAGAGTGTTCGGAA
90162495 AGAGATTTTAGCTTTAGAGTGTTCGGAA
1 AGAGATTTTAGCTTTAGAGTGTTCGGAA
90162523 TTTTGTGACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (28 bp):
AGAGATTTTAGCTTTAGAGTGTTCGGAA
Found at i:90162937 original size:28 final size:28
Alignment explanation
Indices: 90162904--90162959 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
90162894 TTGCCAAGCT
90162904 TTCAAGTTTTTTGGGTTTTCGATCAAAC
1 TTCAAGTTTTTTGGGTTTTCGATCAAAC
*
90162932 TTCAAGTTTTTTGGGTTTTTGATCAAAC
1 TTCAAGTTTTTTGGGTTTTCGATCAAAC
90162960 GCTCAGTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.48
Consensus pattern (28 bp):
TTCAAGTTTTTTGGGTTTTCGATCAAAC
Found at i:90162970 original size:29 final size:28
Alignment explanation
Indices: 90162905--90162970 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
90162895 TGCCAAGCTT
*
90162905 TCAAGTTTTTTGGGTTTTCGATCAAACT
1 TCAAGTTTTTTGGGTTTTCGATCAAACC
*
90162933 TCAAGTTTTTTGGGTTTTTGATCAAACGC
1 TCAAGTTTTTTGGGTTTTCGATCAAAC-C
90162962 TC-AGTTTTT
1 TCAAGTTTTT
90162971 CATCAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.20, C:0.14, G:0.18, T:0.48
Consensus pattern (28 bp):
TCAAGTTTTTTGGGTTTTCGATCAAACC
Found at i:90166856 original size:126 final size:126
Alignment explanation
Indices: 90166689--90166920 Score: 315
Period size: 126 Copynumber: 1.8 Consensus size: 126
90166679 ATTCATGCAT
* * * * *
90166689 TGAAATTTTAAAAGGATATTTGGCTATTTGGTCAACGG-AAAATCGAAACTCAGCACGTTAGGGC
1 TGAAATTTGAAAAGGATATTTAGCTATTCGGTCAACGGAAAAATCGAAACCCAGCACGTTAGGAC
* *
90166753 ACGATTTCTCAAATTTCCAAACACGAAATATTACCTTGTTTTTTAATTTAAGAAAACATGGA
66 ACAATTTCTCAAATTTCCAAAC-CAAAATATTACCTTGTTTTTTAATTTAAGAAAACATGGA
* * * *
90166815 TGAAATTTGGAAAGGATATTTAGTTATTCGGTCAAAC-GAAAAATTGAAACCCAGCACGTTATGA
1 TGAAATTTGAAAAGGATATTTAGCTATTCGGTC-AACGGAAAAATCGAAACCCAGCACGTTAGGA
* *
90166879 CACAATTTCTCGAATTTTCAAACCAAAATATTACCTTGTTTT
65 CACAATTTCTCAAATTTCCAAACCAAAATATTACCTTGTTTT
90166921 GATAAGTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
126 47 0.52
127 44 0.48
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (126 bp):
TGAAATTTGAAAAGGATATTTAGCTATTCGGTCAACGGAAAAATCGAAACCCAGCACGTTAGGAC
ACAATTTCTCAAATTTCCAAACCAAAATATTACCTTGTTTTTTAATTTAAGAAAACATGGA
Found at i:90167420 original size:16 final size:18
Alignment explanation
Indices: 90167390--90167435 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
90167380 GAAATCAATT
*
90167390 ATAAAATAAAAATAA-AA
1 ATAAAATATAAATAATAA
*
90167407 ATAAAA-ATAAATAATAC
1 ATAAAATATAAATAATAA
90167424 ATAAAATATAAA
1 ATAAAATATAAA
90167436 CTTCAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 13 0.52
18 5 0.20
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAAAATATAAATAATAA
Found at i:90167430 original size:12 final size:11
Alignment explanation
Indices: 90167390--90167431 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
90167380 GAAATCAATT
90167390 ATAAAATAAAA
1 ATAAAATAAAA
90167401 ATAAAAATAAAA
1 AT-AAAATAAAA
*
90167413 AT-AAATAATAC
1 ATAAAATAA-AA
90167424 ATAAAATA
1 ATAAAATA
90167432 TAAACTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
10 6 0.22
11 5 0.19
12 16 0.59
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:90167435 original size:7 final size:6
Alignment explanation
Indices: 90167392--90167422 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
90167382 AATCAATTAT
90167392 AAAATA AAAATA AAAATA AAAATA AATAATA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA
90167423 CATAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:90170640 original size:35 final size:35
Alignment explanation
Indices: 90170601--90170672 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
90170591 AAAAAAATGT
*
90170601 AAATAAATTAATATGCTGATGTGTTTCTCAAATTG
1 AAATAAATTAATATGCTGATGTGTTACTCAAATTG
90170636 AAATAAATTAATATGCTGATGTGTTACTCAAATTG
1 AAATAAATTAATATGCTGATGTGTTACTCAAATTG
90170671 AA
1 AA
90170673 TGTCTTCTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (35 bp):
AAATAAATTAATATGCTGATGTGTTACTCAAATTG
Found at i:90171032 original size:129 final size:127
Alignment explanation
Indices: 90170747--90171090 Score: 512
Period size: 129 Copynumber: 2.7 Consensus size: 127
90170737 TTCTTACGTC
* *
90170747 ACTCAAATTGGATGTCTATTTGCCATAAATATAAGGATGTCATGTTGGAATGTTTCTTTAGTTAG
1 ACTCAAATTGGATGTCTATTTGTCATAAATAT-AGGATGTCATGTTGGAATGTTTCTTTAATTAG
* *
90170812 TAGTATATAGC-T-TAATATATATATATATATATTAATTTTCTTACTTCACGATGTTGATTTGTT
65 TAG--TATAGCTTATAATATATATATATATATATTAATTTTCTTACGTCACGATGTTGATGTGTT
* *
90170875 ACTCAAATTGGATGTCTATTTGTGATAAATATAGGATGTCATGTTGGAATGTTTCTTTACTTAGT
1 ACTCAAATTGGATGTCTATTTGTCATAAATATAGGATGTCATGTTGGAATGTTTCTTTAATTAGT
* * *
90170940 AGTATAGCTTATAATATATATATATGTATATCTTAGTTTTTTTACGTCACGATGTTGATGTGTT
66 AGTATAGCTTATAATATATATATA--TATATATTAATTTTCTTACGTCACGATGTTGATGTGTT
* * *
90171004 ACTCAAATTGGATGTCTATTAGTCATAAATATATGGATTTCATGTTGGAATGTTTCTTTAATTAT
1 ACTCAAATTGGATGTCTATTTGTCATAAATATA-GGATGTCATGTTGGAATGTTTCTTTAATTAG
90171069 TAGTATAGCTTATAATATATAT
65 TAGTATAGCTTATAATATATAT
90171091 TAGTTTTTTT
Statistics
Matches: 198, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
125 6 0.03
126 1 0.01
127 47 0.24
128 30 0.15
129 64 0.32
130 50 0.25
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (127 bp):
ACTCAAATTGGATGTCTATTTGTCATAAATATAGGATGTCATGTTGGAATGTTTCTTTAATTAGT
AGTATAGCTTATAATATATATATATATATATTAATTTTCTTACGTCACGATGTTGATGTGTT
Found at i:90171541 original size:18 final size:18
Alignment explanation
Indices: 90171518--90171553 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
90171508 ATTTTTAAAT
*
90171518 ATATAAAATACATCAAAA
1 ATATAAAAAACATCAAAA
*
90171536 ATATAAAAAATATCAAAA
1 ATATAAAAAACATCAAAA
90171554 TAAATATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (18 bp):
ATATAAAAAACATCAAAA
Found at i:90171670 original size:30 final size:30
Alignment explanation
Indices: 90171636--90171698 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
90171626 ACTTAACAAG
*
90171636 CAAATGCTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
*
90171666 CAAATGCCTCTAAAATAATAAGAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
90171696 CAA
1 CAA
90171699 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:90181607 original size:420 final size:416
Alignment explanation
Indices: 90180948--90182093 Score: 1198
Period size: 419 Copynumber: 2.7 Consensus size: 416
90180938 GTACGCTCAG
* * * * **
90180948 ATAAATAAGGT-GAA-ACATATTTGGTATTGCTTTTCTCAAAAGGAATCGAAAAACAAAGCCGAA
1 ATAAAGAAGGTGGAACACA-ATTT-GTATTACTCTTCTCGAAAGGAATCG-AAAACAAAGAAGAA
* * * * *
90181011 AATGTAGTCAGAAATTTGAATGAAAAATTTCTAAAAAGAAAACAAACGAGAGAAAAGGAGAATGA
63 AATGTAGTAAGAAATTTGATTGAAAAATTGCT-AAAAGAAAACAAACAAGAGAAAAGTAGAATGA
* *
90181076 GAGAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGATCTGCTATTTATACGGTTTTC
127 GAGAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGA-CTGCTATTTATACTGTTTTA
* ** * *
90181141 TTAAGGGGTAAAACAATAAAACACGCAATGTTTGTTTCCT-AAAAAATGCAACTGA-TCAAATTT
191 TGAAGGGGTAAAATGATAAAACACACAATGTTAGTTTCCTCAAAAAATGCAACTGACT-AAATTT
* * * *
90181204 TCTACAACAGTCATGATTTTCCACAACTAAAAATATTTTGAAAATAATTTCAAAAAG-AAAAACA
255 TCTACAATAGTCAGGATTTTCCACAACTGAAAATATTCTGAAAATAATTT-AAAAAGAAAAAACA
** *
90181268 GAAATTTTATCC-AAAAGAAA-ATACACGT-GGTA-CGTAGACATGTGTTAACAAGGACACGGAC
319 GAAATTTTATCCAAAAAGAAACATACACGTAGGTACCGTAGACACATGTTAACAAGGACACAGAC
* * * *
90181329 ACAGATTGGGTTGGGCCGGGCAGCGGTTCATACAC-CAGA
384 AC-GAATAGG-TCGG--GGG-A-CGGCTCATACACTC-GA
* *
90181368 ATAAAGGAGGTGGAACACAA-TTGTTATTACTCTTCTCGAAAGGAATCAGAAAACAAAGTAGAAA
1 ATAAAGAAGGTGGAACACAATTTG-TATTACTCTTCTCGAAAGGAATC-GAAAACAAAGAAGAAA
* **
90181432 ATGTAGTAAAAAATTTGATTGAAAAACCGCTAAAAGAAAACAAACAAGAGAAAAGTAGAATGAGA
64 ATGTAGTAAGAAATTTGATTGAAAAATTGCTAAAAGAAAACAAACAAGAGAAAAGTAGAATGAGA
* * * *
90181497 GAAGGATTGTTGTTTGTTTGTTATGTAAAATAAGGAAAATGACATACTATTTATACTGTTTTATG
129 GAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGAC-TGCTATTTATACTGTTTTATG
* * ** * * *
90181562 AAGGGGTAAAATGGTAAAATACACAATGCCAATTTCCTCAAAAAATGCAATTGACTAGATTTTCC
193 AAGGGGTAAAATGATAAAACACACAATGTTAGTTTCCTCAAAAAATGCAACTGACTAAATTTT-C
* * * * * *
90181627 T-TAATAGTTAAAGGATTTTCCGA-AATTGAAAATATTCTGACAATAATTTACAAAGAAAAAATA
257 TACAATAG-T-CAGGATTTTCC-ACAACTGAAAATATTCTGAAAATAATTTAAAAAGAAAAAACA
* ** * * * *
90181690 GAAATTTTATCCAAAAAGAAACATGCTGGTATGTACCGTAGACACATGTTAACATGGGCGCAGAC
319 GAAATTTTATCCAAAAAGAAACATACACGTAGGTACCGTAGACACATGTTAACAAGGACACAGAC
* *
90181755 ACGAATAGGTCGGGTGACGGCTCGTACACTCGA
384 ACGAATAGGTCGGGGGACGGCTCATACACTCGA
* * * *
90181788 ATAAAGAAGGTGGAACACAATTTGTATTGCTCTTCCCGAAAGGGATTGAAAAGCAAAGAAGAAAA
1 ATAAAGAAGGTGGAACACAATTTGTATTACTCTTCTCGAAAGGAATCGAAAA-CAAAGAAGAAAA
* * *
90181853 TGTAGTAGGGAATTTGATTG-AAAATTGCTAAAA-AGAAACAGACAAGAGAAAA-TGAGAATGAG
65 TGTAGTAAGAAATTTGATTGAAAAATTGCTAAAAGA-AAACAAACAAGAGAAAAGT-AGAATGAG
* * * *
90181915 AGAAAGAATGTTGTTTGCTTGTTATGTTAAATGAGGAAAATGACCTGCTATTTTTATTGTTTTCA
128 AGAAAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGA-CTGCTATTTATACTGTTTT-A
* * * *
90181980 -GAAGGGGCAAAATGACAAAACA-AGCAATTTTAGTTTCCTCAAAATATGCAACTGACTAGAATT
191 TGAAGGGGTAAAATGATAAAACACA-CAATGTTAGTTTCCTCAAAAAATGCAACTGACTA-AATT
*
90182043 TT-TACAATAGTCAGAGGATTTTCCGCAACTGAAAATATTCTGAAAA-AATTT
254 TTCTACAATAGTC--AGGATTTTCCACAACTGAAAATATTCTGAAAATAATTT
90182094 TATCCAAAAA
Statistics
Matches: 602, Mismatches: 95, Indels: 60
0.80 0.13 0.08
Matches are distributed among these distances:
418 11 0.02
419 290 0.48
420 178 0.30
421 19 0.03
422 54 0.09
423 9 0.01
424 8 0.01
425 8 0.01
426 25 0.04
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (416 bp):
ATAAAGAAGGTGGAACACAATTTGTATTACTCTTCTCGAAAGGAATCGAAAACAAAGAAGAAAAT
GTAGTAAGAAATTTGATTGAAAAATTGCTAAAAGAAAACAAACAAGAGAAAAGTAGAATGAGAGA
AAGATTGTTGTTTGCTTGTTATGTAAAATGAGGAAAATGACTGCTATTTATACTGTTTTATGAAG
GGGTAAAATGATAAAACACACAATGTTAGTTTCCTCAAAAAATGCAACTGACTAAATTTTCTACA
ATAGTCAGGATTTTCCACAACTGAAAATATTCTGAAAATAATTTAAAAAGAAAAAACAGAAATTT
TATCCAAAAAGAAACATACACGTAGGTACCGTAGACACATGTTAACAAGGACACAGACACGAATA
GGTCGGGGGACGGCTCATACACTCGA
Found at i:90188355 original size:22 final size:23
Alignment explanation
Indices: 90188327--90188369 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
90188317 TTTATTTTAA
*
90188327 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
90188349 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
90188370 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:90192711 original size:14 final size:14
Alignment explanation
Indices: 90192667--90192711 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
90192657 AACTTTTGAC
90192667 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
* * * *
90192681 TCATAAAACATAAA
1 CCCTAAACCTTAAA
90192695 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
90192709 CCC
1 CCC
90192712 CAACCCCTCT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
CCCTAAACCTTAAA
Found at i:90192729 original size:23 final size:23
Alignment explanation
Indices: 90192697--90192740 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
90192687 AACATAAACC
*
90192697 CTAAACCTTAAACCCCAACCCCT
1 CTAAAACTTAAACCCCAACCCCT
*
90192720 CTAAAACTTAAACCCTAACCC
1 CTAAAACTTAAACCCCAACCC
90192741 TTAACCCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.43, G:0.00, T:0.18
Consensus pattern (23 bp):
CTAAAACTTAAACCCCAACCCCT
Found at i:90192768 original size:22 final size:21
Alignment explanation
Indices: 90192730--90192779 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
90192720 CTAAAACTTA
*
90192730 AACCC-TAACCCTTAACCCAT
1 AACCCATAACCCTAAACCCAT
90192750 AACCCATAATCCCTAAACCCAT
1 AACCCATAA-CCCTAAACCCAT
*
90192772 AATCCATA
1 AACCCATA
90192780 TAAACCTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 5 0.19
21 3 0.12
22 18 0.69
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCCATAACCCTAAACCCAT
Found at i:90193268 original size:41 final size:40
Alignment explanation
Indices: 90193221--90193409 Score: 243
Period size: 41 Copynumber: 4.7 Consensus size: 40
90193211 TTATTTTTTT
* **
90193221 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGATTAATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACT-GAGCAATA
*
90193262 GTGGCGTTTTTTCAAAAAGCGCCGCTAAAAACTGAGCAATA
1 GCGGCGTTTTTTC-AAAAGCGCCGCTAAAAACTGAGCAATA
* *
90193303 GCGGCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCACTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTGAGCAATA
* * * * * *
90193343 GCGACGTTTTTTAAAAAGCGCAGCTAAAAGCTGGATCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACT-GAGCAATA
90193384 GCGGCGTTTTTTCAAAAGCGCCGCTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTA
90193410 TTGTTTAGTT
Statistics
Matches: 128, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 53 0.41
41 57 0.45
42 18 0.14
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (40 bp):
GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTGAGCAATA
Found at i:90193401 original size:81 final size:82
Alignment explanation
Indices: 90193221--90193409 Score: 256
Period size: 81 Copynumber: 2.3 Consensus size: 82
90193211 TTATTTTTTT
* ** * * *
90193221 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGATTAATAGTGGCGTTTTTTCAAAAAGCGCCG
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATAGCGACGTTTTTTCAAAAAGCGCAG
90193286 CTAAAAACTGAGCAATA
66 CTAAAAACTGAGCAATA
* *
90193303 GCGGCGTTTTTCCAAAAGCGCCGCTAAAAACT-GAGCACTAGCGACGTTTTTT-AAAAAGCGCAG
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATAGCGACGTTTTTTCAAAAAGCGCAG
* * *
90193366 CTAAAAGCTGGATCTATA
66 CTAAAAACT-GAGCAATA
90193384 GCGGCGTTTTTTCAAAAGCGCCGCTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTA
90193410 TTGTTTAGTT
Statistics
Matches: 94, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 18 0.19
81 46 0.49
82 30 0.32
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (82 bp):
GCGGCGTTTTTTCAAAAGCGCCGCTAAAAACTCGAGCAATAGCGACGTTTTTTCAAAAAGCGCAG
CTAAAAACTGAGCAATA
Found at i:90193464 original size:41 final size:42
Alignment explanation
Indices: 90193382--90193504 Score: 148
Period size: 41 Copynumber: 3.0 Consensus size: 42
90193372 GCTGGATCTA
** * *
90193382 TAGCGGCGTTTTTTC-AAAAGCGCCGCTATTG-TTTAGTTTT
1 TAGCGGCGTTTTGACTAAAAACGCCGCTATTGCTCTAGTTTT
*
90193422 TAGCGGCGTTTTGACTAAAAACGCCACTATTGCTCTA-TTTT
1 TAGCGGCGTTTTGACTAAAAACGCCGCTATTGCTCTAGTTTT
*
90193463 TAGCGGCGTTTGGA-TCAAAAACGCCGCTATTGCTC-AGTTTT
1 TAGCGGCGTTTTGACT-AAAAACGCCGCTATTGCTCTAGTTTT
90193504 T
1 T
90193505 TGCGACATTT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 15 0.21
41 54 0.75
42 3 0.04
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37
Consensus pattern (42 bp):
TAGCGGCGTTTTGACTAAAAACGCCGCTATTGCTCTAGTTTT
Found at i:90193744 original size:31 final size:29
Alignment explanation
Indices: 90193704--90193766 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
90193694 GGACTACCCA
90193704 TATTAATTTTTAATTTA-ATATTTAATAATTT
1 TATTAATTTTT-ATTTATATA-TTAA-AATTT
* *
90193735 TATTCATTTTTATTTATTTATTAAAATTT
1 TATTAATTTTTATTTATATATTAAAATTT
90193764 TAT
1 TAT
90193767 ATATAGTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.28
30 9 0.31
31 12 0.41
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (29 bp):
TATTAATTTTTATTTATATATTAAAATTT
Found at i:90194758 original size:16 final size:15
Alignment explanation
Indices: 90194724--90194780 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 15
90194714 ATGGCATTAG
90194724 TCATGTAATACTCAAT
1 TCATG-AATACTCAAT
*
90194740 TCATGAATACATCATT
1 TCATGAATAC-TCAAT
90194756 TCAT-ACCATACTCAAT
1 TCATGA--ATACTCAAT
90194772 TCATGAATA
1 TCATGAATA
90194781 TATAACTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 9 0.26
16 21 0.60
17 5 0.14
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.35
Consensus pattern (15 bp):
TCATGAATACTCAAT
Found at i:90197959 original size:22 final size:22
Alignment explanation
Indices: 90197864--90197960 Score: 62
Period size: 22 Copynumber: 4.4 Consensus size: 22
90197854 TTACTAATGC
*
90197864 TAGGGTTCACATATTAATC--TA
1 TAGGGTTCACATATTAA-CAACA
*
90197885 TATGGTTCACATATATAGAC-ACA
1 TAGGGTTCACATAT-TA-ACAACA
*
90197908 TA-GGTTCACAT-GTAACAACA
1 TAGGGTTCACATATTAACAACA
*
90197928 TGAAGGGTTCACATATTAATC-ACC
1 T--AGGGTTCACATATTAA-CAACA
90197952 TAGGGTTCA
1 TAGGGTTCA
90197961 GATGTATATA
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
19 2 0.03
20 6 0.10
21 13 0.21
22 21 0.34
23 13 0.21
24 6 0.10
25 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (22 bp):
TAGGGTTCACATATTAACAACA
Found at i:90198211 original size:18 final size:18
Alignment explanation
Indices: 90198188--90198250 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 18
90198178 AAAAAGGGTT
90198188 CACATACAAGAGGGTTCA
1 CACATACAAGAGGGTTCA
* * *
90198206 CACATACTAGGGGGTTCT
1 CACATACAAGAGGGTTCA
* * *
90198224 CACATGCTA-AGGGTTCG
1 CACATACAAGAGGGTTCA
*
90198241 CACATGCAAG
1 CACATACAAG
90198251 GATCTTGCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
17 14 0.38
18 23 0.62
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (18 bp):
CACATACAAGAGGGTTCA
Found at i:90201201 original size:17 final size:18
Alignment explanation
Indices: 90201151--90201201 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
90201141 CCCGATTACA
90201151 TCAAAACCCAACTAAACC
1 TCAAAACCCAACTAAACC
90201169 TCAAAACCCAACTAAACC
1 TCAAAACCCAACTAAACC
*
90201187 TCTAAACCC-ACTAAA
1 TCAAAACCCAACTAAA
90201202 ACCCTTAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 6 0.19
18 26 0.81
ACGTcount: A:0.49, C:0.37, G:0.00, T:0.14
Consensus pattern (18 bp):
TCAAAACCCAACTAAACC
Found at i:90201634 original size:17 final size:17
Alignment explanation
Indices: 90201612--90201650 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
90201602 CCTAAAGGTG
*
90201612 ATTTTA-TCTTCTTTATT
1 ATTTTACTCTTATTT-TT
90201629 ATTTTACTCTTATTTTT
1 ATTTTACTCTTATTTTT
90201646 ATTTT
1 ATTTT
90201651 TATTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTACTCTTATTTTT
Found at i:90201716 original size:13 final size:14
Alignment explanation
Indices: 90201698--90201751 Score: 51
Period size: 13 Copynumber: 4.0 Consensus size: 14
90201688 TATATACATC
90201698 ATAATAAAA-AAAT
1 ATAATAAAACAAAT
* *
90201711 ATAATAAAATATAT
1 ATAATAAAACAAAT
*
90201725 ATATACAAAACAAAT
1 ATA-ATAAAACAAAT
90201740 ATAA-AAAA-AAAT
1 ATAATAAAACAAAT
90201752 TACCTATTCC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 4 0.11
13 13 0.37
14 7 0.20
15 11 0.31
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAATAAAACAAAT
Found at i:90202422 original size:11 final size:11
Alignment explanation
Indices: 90202398--90202440 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
90202388 TTCTAATACG
*
90202398 TATATATATTA
1 TATATATTTTA
*
90202409 TATGTATTTTA
1 TATATATTTTA
* *
90202420 TATATATTATG
1 TATATATTTTA
90202431 TATATATTTT
1 TATATATTTT
90202441 TTAATGCCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:90214838 original size:73 final size:73
Alignment explanation
Indices: 90214763--90215664 Score: 535
Period size: 73 Copynumber: 11.7 Consensus size: 73
90214753 TGATGTTTTT
*
90214763 ATTTCTGTTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
1 ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
**
90214828 TATTTTTT
66 TATTTTCA
* * *
90214836 ATTTCTGTTTGAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAACCTCAAGACACATTGAG
1 ATTTCTGTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAG
90214901 GTATTTTCA
65 GTATTTTCA
* * * ** *
90214910 ATTTCTACTTTTTAAAAAAATCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCT--GTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
90214975 GGTATTTTCA
64 GGTATTTTCA
*
90214985 ATTTCTG-TTCAATTTATGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAA
1 ATTTCTGTTTC-A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
**
90215049 GACACGCTGAGGTATTTTCA
54 GACACATTGAGGTATTTTCA
*** *** * **
90215069 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGG
1 ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
*
90215134 TATTGTCA
66 TATTTTCA
* * * ** *
90215142 ATTTTTGTGTTTAAATCTATTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAG
1 A--TTTCTG-TT---TC-A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
** *
90215207 GACACGCTGAGGTAATTTCA
54 GACACATTGAGGTATTTTCA
*** * **
90215227 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCATGTTGAGG
1 ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
*
90215292 TAATTTCA
66 TATTTTCA
* * * * * *
90215300 ATTTCTGCTTTTCAATTTATATCTTTCAAA-AAAATCA-ACT-C-ATACCGCGAGAGGTGAG--T
1 ATTTCTG--TTTCAA---A-A------AAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
** * * * * ** **
90215359 TGAGCCTCA-GGACACGCTGAGGTAATTT
51 CAAGACACATTG--A-GGT-A--TTTTCA
* * ** * * **
90215387 CAATCTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAGGACACGCTG
1 --ATTTCTGTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
*
90215452 AGGTAATTTCA
63 AGGTATTTTCA
** *
90215463 ATTTCTGTTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
1 ATTTCTG-TTTC-AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
90215528 AGGTATTTTCA
63 AGGTATTTTCA
* * *
90215539 ATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCT
1 ATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACAT--T
90215603 GAGGTATTTTCA
62 GAGGTATTTTCA
* *
90215615 ATTTCCGTCTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 ATTTCTGT-TT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
90215665 TTCAGATCAC
Statistics
Matches: 650, Mismatches: 112, Indels: 130
0.73 0.13 0.15
Matches are distributed among these distances:
72 2 0.00
73 128 0.20
74 104 0.16
75 87 0.13
76 91 0.14
77 36 0.06
78 5 0.01
79 16 0.02
80 3 0.00
81 8 0.01
82 10 0.02
83 9 0.01
84 78 0.12
85 61 0.09
87 3 0.00
88 3 0.00
89 6 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (73 bp):
ATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
TATTTTCA
Found at i:90215181 original size:85 final size:82
Alignment explanation
Indices: 90215076--90215669 Score: 384
Period size: 74 Copynumber: 7.6 Consensus size: 82
90215066 TCAATTTCTG
** *
90215076 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGT-ATTGT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-T
90215140 CAATTTTTGTGTTTAAATCTA
65 CAA-TTTTGT-TTT-AATCTA
* **
90215161 TTTTTCAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
90215226 AA-------TT--TCTG
66 AATTTTGTTTTAATCTA
* * *
90215234 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CATGTTGAGGTAATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTT
*
90215298 CAATTTCTGCTTTTCAATTTA
65 CAATTT-TG-TTTT-AATCTA
**
90215319 TATCTTTCAAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
1 T-T-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
*
90215384 TTTCAATCTCTGTTGTT-A---A
62 TTTCAAT-TTTGTT-TTAATCTA
** *
90215403 ------AAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
90215462 AATTTCTGTTTTCAA---A
66 AATTT-TGTTTT-AATCTA
** * * *
90215478 ------AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
90215537 CAATTTCTG-TTT--TC-A
65 CAATTT-TGTTTTAATCTA
* * * *
90215552 -----AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAAT
* *
90215611 TTCAATTTCCGTCTTAA---A
63 TTCAATTT-TGTTTTAATCTA
* *
90215629 -----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
90215670 ATCACACACT
Statistics
Matches: 433, Mismatches: 41, Indels: 77
0.79 0.07 0.14
Matches are distributed among these distances:
73 64 0.15
74 95 0.22
75 15 0.03
76 83 0.19
77 40 0.09
78 1 0.00
82 2 0.00
84 1 0.00
85 60 0.14
86 4 0.01
87 4 0.01
88 5 0.01
89 58 0.13
90 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (82 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTTGTTTTAATCTA
Found at i:90215211 original size:158 final size:156
Alignment explanation
Indices: 90214850--90215664 Score: 857
Period size: 158 Copynumber: 5.2 Consensus size: 156
90214840 CTGTTTGAAA
* * **
90214850 AAAAATCAACTCATATTACGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * * ** * *
90214915 TACTTTTTAAAAAAATCAACTCATGTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 T-GTTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-
*
90214980 TTTCAATTTCTG--TTCAATTTATGTTTTTC
128 TTTCAATTTCTGTTTTAAATTTA--TTTTTC
*
90215009 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
** *
90215074 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTG
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-
* *
90215139 TCAATTTTTGTGTTTAAATCTATTTTTC
130 TCAATTTCTGT-TTTAAATTTATTTTTC
* ** * *
90215167 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * *
90215232 TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CATGTTGAGGTAAT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGT-AT
*
90215296 TTCAATTTCTGCTTTTCAATTTATATCTTTC
129 TTCAATTTCTG-TTTTAAATTTAT-T-TTTC
** * * *
90215327 AAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATC
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT
** ** *
90215392 TCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAGGACACGCTGAGGTA
64 TCTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-
90215457 ATTTCAATTTCTGTTTTCAAA---A------
127 ATTTCAATTTCTGTTTT-AAATTTATTTTTC
* ** *
90215479 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* *
90215544 TG-TTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGG
66 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGG
* *
90215607 TATTTTCAATTTCCGTCTTAAA---A------
126 TA-TTTCAATTTCTGTTTTAAATTTATTTTTC
90215630 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
90215665 TTCAGATCAC
Statistics
Matches: 568, Mismatches: 68, Indels: 48
0.83 0.10 0.07
Matches are distributed among these distances:
148 2 0.00
149 3 0.01
150 92 0.16
151 37 0.07
152 25 0.04
156 2 0.00
157 55 0.10
158 141 0.25
159 68 0.12
160 12 0.02
162 70 0.12
163 61 0.11
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (156 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
CAATTTCTGTTTTAAATTTATTTTTC
Found at i:90215530 original size:76 final size:74
Alignment explanation
Indices: 90215309--90215669 Score: 456
Period size: 74 Copynumber: 4.8 Consensus size: 74
90215299 AATTTCTGCT
* * **
90215309 TTTCAATTTATATCTTTCAAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
90215374 GCTGAGGTAA
65 GCTGAGGTAA
* ** *
90215384 TTTCAATCTCTGTTGTT-AAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
90215448 GCTGAGGTAA
65 GCTGAGGTAA
** *
90215458 TTTCAATTTCTGTTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGTTTTC-AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
90215523 CGTTGAGGTAT
64 CGCTGAGGTAA
*
90215534 TTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC
1 TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---AC
* *
90215598 ATGCTGAGGTAT
63 ACGCTGAGGTAA
* ** *
90215610 TTTCAATTTCCGTCTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
90215670 ATCACACACT
Statistics
Matches: 253, Mismatches: 24, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
73 3 0.01
74 96 0.38
75 26 0.10
76 87 0.34
77 40 0.16
78 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAA
Found at i:90215584 original size:150 final size:149
Alignment explanation
Indices: 90215309--90215664 Score: 466
Period size: 150 Copynumber: 2.4 Consensus size: 149
90215299 AATTTCTGCT
* * ** *
90215309 TTTCAATTTATATCTTTC-AAAAAAATCAACTCATACCGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTGT-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
90215373 CGCTGAGGTAATTTCAATCTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGC
65 CGCTGAGGTAATTTCAATCTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGC
90215438 CTCAGG-ACACGCTGAGGTAA
130 CTC-GGTACACGCTGAGGTAA
**
90215458 TTTCAATTTCTGTTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGTTTTCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * * ** *
90215523 CGTTGAGGTATTTTCAATTTCTGTT-TTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAG
65 CGCTGAGGTAATTTCAATCTCTGTTGTT-AAAAAAATCAACTCATATTGCGAGAAATAAGTTGAG
* *
90215587 CCTCGGTTCACATGCTGAGGTAT
129 CCTCGG-T-ACACGCTGAGGTAA
* * *
90215610 TTTCAATTTCCGTCTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
90215665 TTCAGATCAC
Statistics
Matches: 180, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
148 4 0.02
149 22 0.12
150 92 0.51
151 28 0.16
152 34 0.19
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (149 bp):
TTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATCTCTGTTGTTAAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCC
TCGGTACACGCTGAGGTAA
Found at i:90216757 original size:17 final size:17
Alignment explanation
Indices: 90216735--90216773 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
90216725 CCTAAAGGTG
*
90216735 ATTTTA-TCTTCTTTATT
1 ATTTTACTCTTATTT-TT
90216752 ATTTTACTCTTATTTTT
1 ATTTTACTCTTATTTTT
90216769 ATTTT
1 ATTTT
90216774 TATTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTACTCTTATTTTT
Found at i:90216987 original size:11 final size:11
Alignment explanation
Indices: 90216971--90217005 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
90216961 CTTTTCCCCC
90216971 CTCCCTTCTCT
1 CTCCCTTCTCT
90216982 CTCCCTTCTCT
1 CTCCCTTCTCT
90216993 CTTCCC-TCTCT
1 C-TCCCTTCTCT
90217004 CT
1 CT
90217006 TTTTTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:90217520 original size:11 final size:11
Alignment explanation
Indices: 90217491--90217531 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
90217481 TTCTAATACG
90217491 TATATATA-T-
1 TATATATATTA
*
90217500 TATATGTATTA
1 TATATATATTA
90217511 TATATATATTA
1 TATATATATTA
*
90217522 TGTATATATT
1 TATATATATT
90217532 TTTTAATGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 7 0.26
10 1 0.04
11 19 0.70
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (11 bp):
TATATATATTA
Found at i:90222902 original size:75 final size:75
Alignment explanation
Indices: 90222798--90222971 Score: 226
Period size: 75 Copynumber: 2.3 Consensus size: 75
90222788 GCACACCCTC
* ** * * * *
90222798 TATATCTGTCAGTTTATTTGACCAGTGCTGGGCTCAA-TCTTCGTCAGTTTATCTGACTAGTGTA
1 TATATTTGTCAGTTTATCCGACTAATGCTGGGCACAACT-TTCGTCAGTTTATCTGACTAGTGCA
90222862 AGGCACAACAT
65 AGGCACAACAT
*
90222873 TATATTTGTC-GATTTATCCGACTAATGCTGGGCACAACTTTCGTTAGTTTATCTGACTAGTGCA
1 TATATTTGTCAG-TTTATCCGACTAATGCTGGGCACAACTTTCGTCAGTTTATCTGACTAGTGCA
* *
90222937 GGGCACACCAT
65 AGGCACAACAT
90222948 TATATTTGTCAGTTTATCCGACTA
1 TATATTTGTCAGTTTATCCGACTA
90222972 GCATTGGGTG
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
74 1 0.01
75 83 0.97
76 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (75 bp):
TATATTTGTCAGTTTATCCGACTAATGCTGGGCACAACTTTCGTCAGTTTATCTGACTAGTGCAA
GGCACAACAT
Found at i:90222907 original size:40 final size:40
Alignment explanation
Indices: 90222845--90222971 Score: 104
Period size: 40 Copynumber: 3.3 Consensus size: 40
90222835 TCTTCGTCAG
* * * *
90222845 TTTATCTGACTAGTGTAAGGCACAACATTATATTTGTCGA
1 TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
* ** *
90222885 TTTATCCGACTAATGCTGGGCACAAC-TT-T-CGT-TAG-
1 TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
* * *
90222920 TTTATCTGACTAGTGCAGGGCACACCATTATATTTGTC-A
1 TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
90222959 GTTTATCCGACTA
1 -TTTATCCGACTA
90222972 GCATTGGGTG
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
35 22 0.34
36 4 0.06
37 2 0.03
38 2 0.03
39 3 0.05
40 32 0.49
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (40 bp):
TTTATCCGACTAATGCAGGGCACAACATTATATTTGTCGA
Found at i:90222986 original size:75 final size:75
Alignment explanation
Indices: 90222837--90223033 Score: 238
Period size: 75 Copynumber: 2.6 Consensus size: 75
90222827 GGGCTCAATC
* *
90222837 TTCGTCAGTTTATCTGACTAGTGTAAGGCACAACATTATATTTGTC-GATTTATCCGACTAATGC
1 TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCAGATTTATCCGACTAAT-C
90222901 TGGGCACAACT
65 TGGGCACAACT
* *
90222912 TTCGTTAGTTTATCTGACTAGTGCAGGGCACACCATTATATTTGTCAG-TTTATCCGACTAGCAT
1 TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCAGATTTATCCGACTA--AT
**
90222976 -TGGGTGCAACT
64 CTGGGCACAACT
* * * ** *
90222987 TTCATTAGTTTATGTGACTAGTGTTGGGCACATTATTATAATTGTCA
1 TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCA
90223034 ATTATTTGAC
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
75 103 0.97
76 1 0.01
77 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (75 bp):
TTCGTTAGTTTATCTGACTAGTGTAGGGCACAACATTATATTTGTCAGATTTATCCGACTAATCT
GGGCACAACT
Found at i:90224084 original size:24 final size:24
Alignment explanation
Indices: 90224056--90224108 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
90224046 ATAAAAACTA
*
90224056 AACCCCGAAAACCCGAAAACAAAG
1 AACCCCGAAAACCAGAAAACAAAG
* *
90224080 AACCCCGAAAGCCAGAAAATAAAG
1 AACCCCGAAAACCAGAAAACAAAG
90224104 AACCC
1 AACCC
90224109 TCAAACGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.53, C:0.32, G:0.13, T:0.02
Consensus pattern (24 bp):
AACCCCGAAAACCAGAAAACAAAG
Done.