Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 284 of 318
Found at i:90814919 original size:16 final size:16
Alignment explanation
Indices: 90814898--90814944 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
90814888 GAAAAACTAT
90814898 ATTTTCTATTATTCTA
1 ATTTTCTATTATTCTA
*
90814914 ATTTTCTATCACTT-TA
1 ATTTTCTATTA-TTCTA
* *
90814930 ATTTTTTATTTTTCT
1 ATTTTCTATTATTCT
90814945 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.21, C:0.13, G:0.00, T:0.66
Consensus pattern (16 bp):
ATTTTCTATTATTCTA
Found at i:90814949 original size:13 final size:13
Alignment explanation
Indices: 90814931--90814956 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90814921 ATCACTTTAA
90814931 TTTTTTATTTTTC
1 TTTTTTATTTTTC
90814944 TTTTTTATTTTTC
1 TTTTTTATTTTTC
90814957 ACTTTACCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTC
Found at i:90815924 original size:168 final size:167
Alignment explanation
Indices: 90815638--90815957 Score: 394
Period size: 168 Copynumber: 1.9 Consensus size: 167
90815628 TATTTAAAAA
* * **
90815638 AAATTCTTTTTTTTAAAAAAATTAAACAATAGCGAAAACCAATCCAACTATTGGTTCACACATCA
1 AAATTATTATTTTTAAAAAAATTAAACAATAGAAAAAACCAATCCAACTATTGGTTCACACATCA
* *
90815703 ACCGATACAACTCTTTATTCTACATAGATACCTCGACCGACCGAATTTTGAATTAACTTTATTTT
66 ACAGATACAACTCTTTATTCTACATAGATACCTCGACCAACCGAATTTTGAATTAACTTTATTTT
* * *
90815768 TTAGAATGTTTTATTATCTTTTTTAATTAAATTGAAT
131 GTAGAATGTATTATTATATTTTTTAATTAAATTGAAT
* * * * ** *
90815805 AAATTATTATTTTTAAAAAAATTTAAACAATAGAAAAAATCAATTCAATTGTTGGTTTGCACGTC
1 AAATTATTATTTTTAAAAAAA-TTAAACAATAGAAAAAACCAATCCAACTATTGGTTCACACATC
* * * **
90815870 AACAGATCCAAC-CTTTTATTCTGGAC-TAG-TATCTCGACCAACCGATTTTTGAATTATTTTTA
65 AACAGATACAACTC-TTTATTCT--ACATAGATACCTCGACCAACCGAATTTTGAATTAACTTTA
90815932 TTTTGTAGAATGTATTATTATATTTT
127 TTTTGTAGAATGTATTATTATATTTT
90815958 ATTCTTTATA
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
167 20 0.16
168 103 0.80
169 3 0.02
170 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (167 bp):
AAATTATTATTTTTAAAAAAATTAAACAATAGAAAAAACCAATCCAACTATTGGTTCACACATCA
ACAGATACAACTCTTTATTCTACATAGATACCTCGACCAACCGAATTTTGAATTAACTTTATTTT
GTAGAATGTATTATTATATTTTTTAATTAAATTGAAT
Found at i:90816021 original size:16 final size:18
Alignment explanation
Indices: 90815993--90816035 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
90815983 AAAAAAATTG
*
90815993 AATTTTT-TAATTT-AAT
1 AATTTTTATATTTTCAAT
*
90816009 AATTTTTATATTTTCTAT
1 AATTTTTATATTTTCAAT
90816027 AATTTTTAT
1 AATTTTTAT
90816036 TGTTCTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 7 0.30
17 5 0.22
18 11 0.48
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
AATTTTTATATTTTCAAT
Found at i:90816248 original size:14 final size:14
Alignment explanation
Indices: 90816229--90816255 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90816219 TATTCTAAAA
90816229 AATTTCAATTTTTG
1 AATTTCAATTTTTG
90816243 AATTTCAATTTTT
1 AATTTCAATTTTT
90816256 TTATAATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (14 bp):
AATTTCAATTTTTG
Found at i:90819075 original size:21 final size:21
Alignment explanation
Indices: 90819049--90819089 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
90819039 ATCTACTCAA
* *
90819049 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
90819070 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
90819090 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:90822150 original size:8 final size:8
Alignment explanation
Indices: 90822137--90822179 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
90822127 CGAAGGAAAG
*
90822137 AAAATTAA
1 AAAATTGA
90822145 AAAATTGA
1 AAAATTGA
*
90822153 AAATTTGA
1 AAAATTGA
*
90822161 AAATTTGA
1 AAAATTGA
90822169 AAAATTGA
1 AAAATTGA
90822177 AAA
1 AAA
90822180 GGTGGAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (8 bp):
AAAATTGA
Found at i:90824865 original size:52 final size:48
Alignment explanation
Indices: 90824846--90825048 Score: 256
Period size: 46 Copynumber: 4.3 Consensus size: 48
90824836 TGACAAGTGG
* *
90824846 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
90824892 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
90824944 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
* ** *
90824990 AAAGTGATAAGTGACAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
90825036 AAAGTGATAAGTG
1 AAAGTGATAAGTG
90825049 GCTACACTTA
Statistics
Matches: 143, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
46 99 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:90824900 original size:98 final size:98
Alignment explanation
Indices: 90824780--90825048 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
90824770 TTTGAGTACT
*
90824780 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
90824845 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
90824878 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
90824943 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * *
90824976 TCTGATCAAGAGACAAAGTGATAAGTGACAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
90825041 GATAAGTG
65 GAAAAGTG
90825049 GCTACACTTA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 148 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:90825054 original size:37 final size:37
Alignment explanation
Indices: 90825012--90825157 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
90825002 GACAGCTTTA
*
90825012 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
90825049 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
90825086 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
90825123 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
90825158 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:90827154 original size:13 final size:13
Alignment explanation
Indices: 90827136--90827161 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90827126 TAGGAAGCTC
90827136 ATTATGAATTATG
1 ATTATGAATTATG
90827149 ATTATGAATTATG
1 ATTATGAATTATG
90827162 TGTATTCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
ATTATGAATTATG
Found at i:90829915 original size:3 final size:3
Alignment explanation
Indices: 90829907--90830014 Score: 60
Period size: 3 Copynumber: 35.0 Consensus size: 3
90829897 GTACTGCTTC
* * *
90829907 TAT TAT TAT TAT TAT TAT TATT TAC TAT TAT TAT TTT TCA- TACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT T-AT TA-T TAT
* ** * *
90829954 ATAT TAT TAT T-T ATAT TAT TAC TAT CCT T-T TCAT TCT TAT TTT TAT
1 -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
*
90830000 TAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
90830015 AATCTTATTT
Statistics
Matches: 80, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
2 4 0.05
3 65 0.81
4 11 0.14
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:90830034 original size:11 final size:14
Alignment explanation
Indices: 90829988--90830029 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
90829978 TCCTTTTCAT
*
90829988 TCTTATTTTTATTAA
1 TCTTATTATTA-TAA
*
90830003 TATTATTATTATAA
1 TCTTATTATTATAA
90830017 TCTTATT-TTATAA
1 TCTTATTATTATAA
90830030 CTATTATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 6 0.25
14 9 0.38
15 9 0.38
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (14 bp):
TCTTATTATTATAA
Found at i:90831442 original size:19 final size:20
Alignment explanation
Indices: 90831404--90831442 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
90831394 CATGTACATA
90831404 ATAAAAATATATACTAATAC
1 ATAAAAATATATACTAATAC
* *
90831424 ATAACAATA-ATAGTAATAC
1 ATAAAAATATATACTAATAC
90831443 TAATAATACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (20 bp):
ATAAAAATATATACTAATAC
Found at i:90831948 original size:24 final size:24
Alignment explanation
Indices: 90831919--90831971 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
90831909 TTTGTACCGT
*
90831919 GGAGA-GAAAAAAAAGGAGAGAAGG
1 GGAGAGGAAAAAAAAGAAGAG-AGG
* *
90831943 GGAGAGGGAAAGAAAGAAGAGAGG
1 GGAGAGGAAAAAAAAGAAGAGAGG
90831967 GGAGA
1 GGAGA
90831972 AGAGGGAGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (24 bp):
GGAGAGGAAAAAAAAGAAGAGAGG
Found at i:90833554 original size:72 final size:72
Alignment explanation
Indices: 90833318--90833570 Score: 409
Period size: 73 Copynumber: 3.5 Consensus size: 72
90833308 ACATGTGAAC
* *
90833318 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
*
90833382 CAGCGTGTCT
63 CAACGTGTCT
*
90833392 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
90833457 ACGTGTCT
65 ACGTGTCT
*
90833465 TGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
90833530 TGTGTCT
66 CGTGTCT
90833537 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
90833571 TTCTTTCAAA
Statistics
Matches: 169, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
72 67 0.40
73 72 0.43
74 30 0.18
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:90833652 original size:88 final size:87
Alignment explanation
Indices: 90833503--90833749 Score: 264
Period size: 88 Copynumber: 2.8 Consensus size: 87
90833493 AGTTGAATTT
* ** * * **
90833503 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
90833568 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTAAAAAACA-AA-AA
* *
90833591 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAAT
1 TGAAAACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
90833656 TGATTTTTTTTAAAAAACAGAAA
66 TGA-TTTCTTTAAAAAACAAAAA
* ** * *
90833679 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTATCCTAAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTCGGTGTG-A-CCTGAGGCTCAACTCACCTCTCGCAATAT
90833743 GAGTTGA
62 GAGTTGA
90833750 AATTAAAACG
Statistics
Matches: 134, Mismatches: 19, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
88 66 0.49
89 20 0.15
90 14 0.10
91 34 0.25
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (87 bp):
TGAAAACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTAAAAAACAAAAA
Found at i:90834194 original size:72 final size:73
Alignment explanation
Indices: 90833971--90834395 Score: 507
Period size: 72 Copynumber: 5.7 Consensus size: 73
90833961 AGTGTGTAAT
* * * * *
90833971 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TATTTTGAAAACAGAAATTGAAATTACC
**
90834036 TCAGCATGTGAA
64 TCAGC--GTGTC
* * *
90834048 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAATAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA---TATTTTGAAAACAGAAATTGAAATTAC
*
90834113 CTCAACGTGTC
63 CTCAGCGTGTC
* **
90834124 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAATTACCTC
90834188 AGCGTGTC
66 AGCGTGTC
* **
90834196 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAATTACCTC
90834260 AGCGTGTC
66 AGCGTGTC
** * * *
90834268 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TATTTTGAA-AACAGAAATTGAAATTACC
90834333 TCAGCGTGTC
64 TCAGCGTGTC
* * *
90834343 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG--ATTTTGAAAAACAAAAATT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTG-AAAACAGAAATT
90834396 AAAAGCCTTA
Statistics
Matches: 319, Mismatches: 24, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
72 151 0.47
73 2 0.01
74 6 0.02
75 60 0.19
76 35 0.11
77 33 0.10
78 32 0.10
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAATTACCTC
AGCGTGTC
Found at i:90834281 original size:144 final size:144
Alignment explanation
Indices: 90833971--90834399 Score: 549
Period size: 147 Copynumber: 2.9 Consensus size: 144
90833961 AGTGTGTAAT
* ** *
90833971 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTAAAACAGAAATTGAAATTACC
* * *
90834036 TCAGCATGTGAACTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAATAGA
64 TCAGC--GTG-TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA----ATTTTGAAAACAGA
90834101 AATTGAAAATACCTCAACGTGTC
122 AATTGAAAATACCTCAACGTGTC
* * * *
90834124 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAATTACCTC
**
90834188 AGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAA
66 AGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAA
* *
90834253 TTACCTCAGCGTGTC
130 ATACCTCAACGTGTC
90834268 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTAA-AACAGAAATTGAAATTACC
* * *
90834333 TCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-
64 TCAGCGTGT-CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTG-AAAACAGAAATTG
90834396 AAAA
127 AAAA
90834400 GCCTTAACTC
Statistics
Matches: 245, Mismatches: 25, Indels: 19
0.85 0.09 0.07
Matches are distributed among these distances:
144 66 0.27
146 15 0.06
147 69 0.28
148 36 0.15
150 29 0.12
153 30 0.12
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (144 bp):
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAATTACCTC
AGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAAA
TACCTCAACGTGTC
Found at i:90834518 original size:69 final size:71
Alignment explanation
Indices: 90834405--90834572 Score: 211
Period size: 69 Copynumber: 2.4 Consensus size: 71
90834395 TAAAAGCCTT
* * * **
90834405 AACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCTG
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGTGCCCTG
90834468 AGGCTC
66 AGGCTC
* * *
90834474 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAA-A-AAATTAAAAATACCTCAACGTGTCTTG
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGTGCCCTG
90834537 AGGCTC
66 AGGCTC
*
90834543 AACTCA-TCTCTCGCAATATAAGTTGATTTT
1 AACTCACT-TCTCGCAATATGAGTTGATTTT
90834573 CCTTGGAAAG
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
68 1 0.01
69 76 0.87
70 3 0.03
71 7 0.08
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (71 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGTGCCCTG
AGGCTC
Found at i:90846629 original size:30 final size:28
Alignment explanation
Indices: 90846587--90846664 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 28
90846577 ACATACACAC
**
90846587 TATATAT-AAATATAAAAATAGTATTAAA
1 TATATATAAAATATAAAAATAG-AAAAAA
* *
90846615 TATATATAAGAATATAATATTAGAAAAAA
1 TATATATAA-AATATAAAAATAGAAAAAA
90846644 TATTATATAATAATATAAAAA
1 TA-TATATAA-AATATAAAAA
90846665 ATAATGATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 7 0.17
29 7 0.17
30 26 0.65
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (28 bp):
TATATATAAAATATAAAAATAGAAAAAA
Found at i:90846652 original size:22 final size:22
Alignment explanation
Indices: 90846626--90846667 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
90846616 ATATATAAGA
*
90846626 ATATAATATTAGAAAAAATATT
1 ATATAATAATAGAAAAAATATT
*
90846648 ATATAATAATATAAAAAATA
1 ATATAATAATAGAAAAAATA
90846668 ATGATAAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
ATATAATAATAGAAAAAATATT
Found at i:90846697 original size:16 final size:16
Alignment explanation
Indices: 90846678--90846737 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
90846668 ATGATAAGTA
90846678 TAATAAAATATAATAT
1 TAATAAAATATAATAT
*
90846694 TAATAATATATAATTAT
1 TAATAAAATATAA-TAT
* * *
90846711 AAAATAAAA-GTAAGAT
1 -TAATAAAATATAATAT
90846727 TAAT-AAATATA
1 TAATAAAATATA
90846738 TTAATTAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
14 3 0.09
15 5 0.15
16 14 0.41
17 6 0.18
18 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
TAATAAAATATAATAT
Found at i:90846699 original size:9 final size:10
Alignment explanation
Indices: 90846642--90846794 Score: 54
Period size: 10 Copynumber: 15.4 Consensus size: 10
90846632 TATTAGAAAA
*
90846642 AATATTATAT
1 AATAATATAT
90846652 AATAATATA-
1 AATAATATAT
*
90846661 AAAAATA-AT
1 AATAATATAT
* *
90846670 GATAA-GTAT
1 AATAATATAT
*
90846679 AATAAAATAT
1 AATAATATAT
*
90846689 AATATTA-AT
1 AATAATATAT
90846698 AAT-ATATAAT
1 AATAATAT-AT
* * *
90846708 TATAAAATAA
1 AATAATATAT
*
90846718 AAGTAAGAT-T
1 AA-TAATATAT
90846728 AATAAATATATT
1 AAT-AATATA-T
*
90846740 AATTAAGATAT
1 AA-TAATATAT
90846751 AAATAA-ATAT
1 -AATAATATAT
90846761 -ATAATATA-
1 AATAATATAT
* *
90846769 AGCTAATAAAGT
1 A-ATAATATA-T
90846781 AATAATATAT
1 AATAATATAT
90846791 AATA
1 AATA
90846795 TAAATACAAT
Statistics
Matches: 104, Mismatches: 22, Indels: 34
0.65 0.14 0.21
Matches are distributed among these distances:
8 7 0.07
9 24 0.23
10 43 0.41
11 18 0.17
12 11 0.11
13 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.35
Consensus pattern (10 bp):
AATAATATAT
Found at i:90846742 original size:12 final size:12
Alignment explanation
Indices: 90846725--90846766 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
90846715 TAAAAGTAAG
90846725 ATTAATAAATAT
1 ATTAATAAATAT
* *
90846737 ATTAATTAAGAT
1 ATTAATAAATAT
*
90846749 ATAAATAAATAT
1 ATTAATAAATAT
90846761 A-TAATA
1 ATTAATA
90846767 TAAGCTAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (12 bp):
ATTAATAAATAT
Found at i:90846758 original size:24 final size:22
Alignment explanation
Indices: 90846721--90846789 Score: 72
Period size: 21 Copynumber: 3.1 Consensus size: 22
90846711 AAAATAAAAG
90846721 TAAGATTAATAAATATATTAAT-
1 TAAGATTAATAAATATA-TAATA
90846743 TAAGATATAAATAAATATATAATA
1 TAAGAT-T-AATAAATATATAATA
*
90846767 TAAG-CTAATAAAGTA-ATAATA
1 TAAGATTAATAAA-TATATAATA
90846788 TA
1 TA
90846790 TAATATAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
21 14 0.33
22 9 0.21
23 5 0.12
24 14 0.33
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (22 bp):
TAAGATTAATAAATATATAATA
Found at i:90847372 original size:16 final size:16
Alignment explanation
Indices: 90847351--90847381 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90847341 AATCGCCTTA
90847351 TTTTCTTTTTGTTCTC
1 TTTTCTTTTTGTTCTC
*
90847367 TTTTCTTTTTTTTCT
1 TTTTCTTTTTGTTCT
90847382 ATCGTTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTCTTTTTGTTCTC
Found at i:90862379 original size:3 final size:3
Alignment explanation
Indices: 90862358--90862399 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
90862348 AAGCATAAAC
* * *
90862358 TAA TAA AAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
90862400 CATTGGAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:90862512 original size:23 final size:23
Alignment explanation
Indices: 90862494--90862547 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
90862484 TGTATACATG
90862494 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* *
90862517 TACATAATAATAATA-ATAGTAA
1 TACATAATAAAAATATATACTAA
90862539 TAC-TAATAA
1 TACATAATAA
90862548 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:90862519 original size:29 final size:26
Alignment explanation
Indices: 90862497--90862556 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
90862487 ATACATGTAC
90862497 ATAATAAAAATATATACTAATACATA
1 ATAATAAAAATATATACTAATACATA
*
90862523 ATAATAATAATAGTAATACTAATA-ATA
1 ATAATAAAAATA-T-ATACTAATACATA
*
90862550 CTAATAA
1 ATAATAA
90862557 TATAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 11 0.37
27 10 0.33
28 9 0.30
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.32
Consensus pattern (26 bp):
ATAATAAAAATATATACTAATACATA
Found at i:90862528 original size:3 final size:3
Alignment explanation
Indices: 90862497--90862567 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
90862487 ATACATGTAC
* * * *
90862497 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
90862544 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
90862568 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:90863875 original size:3 final size:3
Alignment explanation
Indices: 90863867--90863931 Score: 69
Period size: 3 Copynumber: 22.0 Consensus size: 3
90863857 GTACAAATAC
* * * * *
90863867 ATT ATT ATT ACT ATT TTT GTT ATT ATT ATT ATT ACT ATT -GT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
90863914 ACT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
90863932 TTGTATTTAC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
2 1 0.02
3 49 0.98
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:90863941 original size:26 final size:30
Alignment explanation
Indices: 90863886--90863956 Score: 87
Period size: 28 Copynumber: 2.5 Consensus size: 30
90863876 ACTATTTTTG
90863886 TTATTATTATTATTACTATTGTATTATTAC
1 TTATTATTATTATTACTATTGTATTATTAC
*
90863916 -TATTATTATTATTA-TTTTGTA-T-TTAC
1 TTATTATTATTATTACTATTGTATTATTAC
*
90863942 TTATACATTATTATT
1 TTAT-TATTATTATT
90863957 TTTATATCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 4 0.11
27 4 0.11
28 15 0.41
29 14 0.38
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.62
Consensus pattern (30 bp):
TTATTATTATTATTACTATTGTATTATTAC
Found at i:90864353 original size:6 final size:6
Alignment explanation
Indices: 90864080--90864335 Score: 205
Period size: 6 Copynumber: 42.3 Consensus size: 6
90864070 TCAACTTTAG
* * **
90864080 ATTATTT ATTATT -TGTATT ATTGTT ATTATT ACTATTT ATTATT ACCATT
1 ATTA-TT ATTATT AT-TATT ATTATT ATTATT ATTA-TT ATTATT ATTATT
* * * * *
90864130 ATTATT ACTATT ACTATT ACTATT ACTATT ACTATT ACTT-TT ACTT-TT
1 ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT A-TTATT A-TTATT
* * * * * * *
90864178 ATTACT ATCACT A-TATT ATTTTT ATTTTCT ATTACT ATTATC ATTATT
1 ATTATT ATTATT ATTATT ATTATT ATTAT-T ATTATT ATTATT ATTATT
* * * * * * *
90864226 ATTACT AATATT AATATT CTTATT ATTACT ATTATT ATTATC ATTAGT
1 ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT
* *
90864274 ATTATT ATTACT ATTATT ATTATT ATTATT ACTATT ATTATT ATTATT
1 ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT ATTATT
90864322 ATTATT ATTATT AT
1 ATTATT ATTATT AT
90864336 CATTGTCATT
Statistics
Matches: 206, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
5 6 0.03
6 185 0.90
7 15 0.07
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.59
Consensus pattern (6 bp):
ATTATT
Found at i:90871094 original size:64 final size:64
Alignment explanation
Indices: 90871014--90871139 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
90871004 ATTCAAGACG
* *
90871014 CATCTAGTTAGGAGCATTGGATTCATTTCGGTCATAGCATCCTAATTATTTGACATAAGCATTA
1 CATCTAGCTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATTA
* * * * *
90871078 CATCTAGCTAGGAGCATTTGATTCATTTCGATTATCGTATCCTAATTATTTGGCATAAGCAT
1 CATCTAGCTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
90871140 AGATACATGA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (64 bp):
CATCTAGCTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATTA
Found at i:90871347 original size:88 final size:88
Alignment explanation
Indices: 90871192--90871586 Score: 526
Period size: 88 Copynumber: 4.5 Consensus size: 88
90871182 TGAATTTACT
* *
90871192 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCTTAAGTC-G
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAG-CAG
*
90871256 TAGCGGAGCAGATCGAACACTGTG
65 TAGCGGAGCAGATCGAAGACTGTG
* **
90871280 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTATTTCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
** *
90871345 AGCGGAGCAGATAAAAGACGGTG
66 AGCGGAGCAGATCGAAGACTGTG
* *
90871368 AGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTACAAATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
* **
90871433 AGCGGAGAAGATCGAAGACAATG
66 AGCGGAGCAGATCGAAGACTGTG
** * * * *
90871456 AGCCTTAA-CCCCTAAAAAGTAGGGAAACAGGCTAAAAATTATAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
* *
90871520 AGTGGAGCAGATCGAAGA-TGATA
66 AGCGGAGCAGATCGAAGACTG-TG
* **
90871543 AGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGGAAATTACA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACA
90871587 ATTCGTATCT
Statistics
Matches: 266, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
87 74 0.28
88 192 0.72
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
AGCGGAGCAGATCGAAGACTGTG
Found at i:90871428 original size:44 final size:43
Alignment explanation
Indices: 90871202--90871434 Score: 113
Period size: 44 Copynumber: 5.3 Consensus size: 43
90871192 AGCCTTAACC
90871202 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTGTCT
* * * * * * * ** *
90871246 CCTTAAGTC-GTAGCGG-AGCAGATCGAACACTGT-GAG-CCTTAACC
1 CCCTAAG-CAGTAG-GGTAACAG-GCTAA-AAT-TACAGATCTTGTCT
*
90871290 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTAT
1 CCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTGTCT
** * * * * * **
90871334 TTCTAAGCAGTAGCGG-AGCA-GATAAAA-GACGGTGAGCCTTAAC-
1 CCCTAAGCAGTAG-GGTAACAGGCTAAAATTAC--AGA-TCTTGTCT
90871377 CCTCTAAGCAGTAGGGTAACAGGCTACAAATTACAGATCTTGTCT
1 CC-CTAAGCAGTAGGGTAACAGGCTA-AAATTACAGATCTTGTCT
90871422 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
90871435 CGGAGAAGAT
Statistics
Matches: 129, Mismatches: 40, Indels: 40
0.62 0.19 0.19
Matches are distributed among these distances:
41 2 0.02
42 5 0.04
43 14 0.11
44 85 0.66
45 17 0.13
46 4 0.03
47 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTGTCT
Found at i:90871668 original size:44 final size:43
Alignment explanation
Indices: 90871617--90872090 Score: 118
Period size: 44 Copynumber: 10.8 Consensus size: 43
90871607 TCAGCGGAGT
*
90871617 AGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGC
1 AGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTA-AGC
* ** * * *
90871661 A-ACTCGAAGCCAC-AAT-TCGTATCTCCTTGAAATTCCGGCGAAGT
1 AGA-TCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGC-ACTAAGC
* *
90871705 AGATCGGAGCTACAAATCTCTTCTCCTTGAAATGGCACTGGAG-
1 AGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACT-AAGC
* * * * * ** * * *
90871748 AGGCTCAAAGCCAC-AAT-TCGTATCTCATTGAAGTTCCAGTGGAGT
1 A-GATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCACT-AAGC
* * *
90871793 ACATCAAAGCTATAAATCTCTTCTCCTTGAAATGGCACTAGAG-
1 AGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTA-AGC
* * * * * ** ** *
90871836 AGGCTTGAAGCCAC-AAT-TAGTATCTCCTTGAAGTTCCAGCGGAGT
1 A-GATCGAAGCTACAAATCT-CT-TCTCCTTGAAATGGCA-CTAAGC
* *
90871881 ACATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTGGAG-
1 AGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACT-AAGC
* * * ** ** *
90871924 AGGCTCGAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAGCGGAGT
1 A-GATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCA-CTAAGC
* **
90871969 AGATCGAAGCTACAAATCTCTTCTTCC-TGAAATGACACCGGAG-
1 AGATCGAAGCTACAAATCTCTTC-TCCTTGAAATGGCA-CTAAGC
* * * * ** *
90872012 AGGCTCGAAGCCAC-AAT-TCGTATATCCTTGAATTTCCAGC-AGAGT
1 A-GATCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCA-CTA-AGC
90872057 AGATCGAAGCTACAAATCTCTTCTCCTTGAAATG
1 AGATCGAAGCTACAAATCTCTTCTCCTTGAAATG
90872091 ACATTGGAAC
Statistics
Matches: 311, Mismatches: 80, Indels: 78
0.66 0.17 0.17
Matches are distributed among these distances:
42 9 0.03
43 30 0.10
44 231 0.74
45 32 0.10
46 9 0.03
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
AGATCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAAGC
Found at i:90872093 original size:88 final size:88
Alignment explanation
Indices: 90871584--90872090 Score: 775
Period size: 88 Copynumber: 5.8 Consensus size: 88
90871574 GCTGGAAATT
* *
90871584 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
* *
90871649 TGGCACTAGAGCA-ACTCGAAGCC
66 TGGCACTGGAG-AGGCTCGAAGCC
* * * *
90871672 ACAATTCGTATCTCCTTGAAATTCCGGCGAAGTAGATCGGAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
*
90871737 TGGCACTGGAGAGGCTCAAAGCC
66 TGGCACTGGAGAGGCTCGAAGCC
* * * * *
90871760 ACAATTCGTATCTCATTGAAGTTCCAGTGGAGTACATCAAAGCTATAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
* *
90871825 TGGCACTAGAGAGGCTTGAAGCC
66 TGGCACTGGAGAGGCTCGAAGCC
* *
90871848 ACAATTAGTATCTCCTTGAAGTTCCAGCGGAGTACATCGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
90871913 TGGCACTGGAGAGGCTCGAAGCC
66 TGGCACTGGAGAGGCTCGAAGCC
90871936 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTTCC-TGAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTC-TCCTTGAA
* *
90872000 ATGACACCGGAGAGGCTCGAAGCC
65 ATGGCACTGGAGAGGCTCGAAGCC
* * *
90872024 ACAATTCGTATATCCTTGAATTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
90872089 TG
66 TG
90872091 ACATTGGAAC
Statistics
Matches: 381, Mismatches: 35, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
87 4 0.01
88 374 0.98
89 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAA
TGGCACTGGAGAGGCTCGAAGCC
Found at i:90873752 original size:3 final size:3
Alignment explanation
Indices: 90873744--90873982 Score: 82
Period size: 3 Copynumber: 80.3 Consensus size: 3
90873734 GTACTGCTTC
* * *
90873744 TAT TAT TAT TAT TAT TAT TATT TAC TAT TAT TAT TTT TCA- TACA TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT T-AT TA-T TAT
* ** * *
90873791 ATAT TAT TAT T-T ATAT TAT TAC TAT CCT T-T TCAT TCT TAT TTT TAT
1 -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
* * * * * * * *
90873837 TAA TAT TAT TA- TAA TCT TAT T-T TAT AAC TAT TAT CAT T-T TTT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
90873882 AAT TAT TGT TAC TAT TAT TCT T-T TAC CAT T-T AAT ACAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * * * *
90873926 TAC TAT TTT TGT TAT TAT TAT TAT TAC TAT T-G TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
90873973 TAT TAT TAT T
1 TAT TAT TAT T
90873983 TTTTGTATTT
Statistics
Matches: 167, Mismatches: 53, Indels: 32
0.66 0.21 0.13
Matches are distributed among these distances:
2 14 0.08
3 140 0.84
4 13 0.08
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:90874155 original size:3 final size:3
Alignment explanation
Indices: 90874134--90874371 Score: 178
Period size: 3 Copynumber: 78.7 Consensus size: 3
90874124 TCAACTTTAG
* * **
90874134 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ATT ACT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
90874181 ATT ATT ATT ACT ATT ACT ATT ACT ATT ACT ATT ACTT -TT ACTT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT
* * * * * *
90874226 ATT ACT ATC ACT A-T ATT ATT ATT ATT ATT TTT TTCT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
* * * * * *
90874271 ATC ATT ATT ATT ATT ACT AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
90874319 ATT ATC ATT AGT ATT ATT ATT ATT ACT ATT ATT ATT ATT AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
90874367 ATT AT
1 ATT AT
90874372 CATTCTCATT
Statistics
Matches: 181, Mismatches: 44, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
2 7 0.04
3 162 0.90
4 12 0.07
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:90878349 original size:14 final size:13
Alignment explanation
Indices: 90878306--90878362 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
90878296 CCCATCACAT
90878306 CAAAACCCAATA-
1 CAAAACCCAATAC
*
90878318 CAAAGACCCACAAAC
1 CAAA-ACCCA-ATAC
90878333 CAAAACCCAATATC
1 CAAAACCCAATA-C
*
90878347 CAATACCCAAATAC
1 CAAAACCC-AATAC
90878361 CA
1 CA
90878363 GGTCAGCCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 4 0.11
13 7 0.19
14 18 0.49
15 8 0.22
ACGTcount: A:0.53, C:0.37, G:0.02, T:0.09
Consensus pattern (13 bp):
CAAAACCCAATAC
Found at i:90878844 original size:26 final size:24
Alignment explanation
Indices: 90878813--90878862 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
90878803 AAATAAAAAA
*
90878813 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
90878839 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
90878863 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:90878882 original size:21 final size:21
Alignment explanation
Indices: 90878833--90878891 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
90878823 ATAATAAATC
*
90878833 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
90878853 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
90878875 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
90878892 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:90879993 original size:9 final size:9
Alignment explanation
Indices: 90879964--90880021 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
90879954 TTTCGTTTCT
90879964 TTATTAAATA
1 TTATT-AATA
*
90879974 TTATTATTA
1 TTATTAATA
90879983 TT-TGTAATA
1 TTAT-TAATA
90879992 TTATTAATA
1 TTATTAATA
*
90880001 TTATTACTA
1 TTATTAATA
* *
90880010 TAATTATTA
1 TTATTAATA
90880019 TTA
1 TTA
90880022 ACATTAATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
8 1 0.03
9 33 0.82
10 6 0.15
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (9 bp):
TTATTAATA
Found at i:90879993 original size:18 final size:18
Alignment explanation
Indices: 90879964--90880021 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
90879954 TTTCGTTTCT
90879964 TTATTAAATATTATTATTA
1 TTATT-AATATTATTATTA
*
90879983 TT-TGTAATATTATTAATA
1 TTAT-TAATATTATTATTA
* *
90880001 TTATTACTATAATTATTA
1 TTATTAATATTATTATTA
90880019 TTA
1 TTA
90880022 ACATTAATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 29 0.88
19 4 0.12
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TTATTAATATTATTATTA
Found at i:90880280 original size:14 final size:15
Alignment explanation
Indices: 90880263--90880291 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
90880253 TTATTAGAAC
90880263 ATTATTTT-TTTATT
1 ATTATTTTCTTTATT
90880277 ATTATTTTCTTTATT
1 ATTATTTTCTTTATT
90880292 GTGAATACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTATTTTCTTTATT
Found at i:90881706 original size:4 final size:4
Alignment explanation
Indices: 90881697--90881731 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
90881687 ACCATCTGTT
*
90881697 TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
90881732 GTTTTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:90882830 original size:10 final size:9
Alignment explanation
Indices: 90882767--90882847 Score: 55
Period size: 10 Copynumber: 8.9 Consensus size: 9
90882757 AATTTTAAAA
90882767 AATATTTTT
1 AATATTTTT
90882776 -ATACTTTTT
1 AATA-TTTTT
90882785 AATCA-TTTT
1 AAT-ATTTTT
*
90882794 AATGATTTGT
1 AAT-ATTTTT
*
90882804 AAT-TTTTAAA
1 AATATTTT--T
90882814 AATATTTTT
1 AATATTTTT
90882823 ATATATTTTT
1 A-ATATTTTT
90882833 AA-ATTTTT
1 AATATTTTT
90882841 AA-ATTTT
1 AATATTTT
90882848 AAAAAATCAA
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
8 19 0.32
9 15 0.25
10 20 0.34
11 5 0.08
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (9 bp):
AATATTTTT
Found at i:90882831 original size:38 final size:37
Alignment explanation
Indices: 90882780--90882852 Score: 87
Period size: 37 Copynumber: 1.9 Consensus size: 37
90882770 ATTTTTATAC
*
90882780 TTTTTAATCA-TTTTAATGATTTGTAATTTTTAAAAATA
1 TTTTTAATCATTTTTAA--ATTTGTAAATTTTAAAAATA
*
90882818 TTTTTATAT-ATTTTTAAATTTTTAAATTTTAAAAA
1 TTTTTA-ATCATTTTTAAATTTGTAAATTTTAAAAA
90882853 ATCAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 16 0.52
38 7 0.23
39 8 0.26
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (37 bp):
TTTTTAATCATTTTTAAATTTGTAAATTTTAAAAATA
Found at i:90889693 original size:15 final size:15
Alignment explanation
Indices: 90889673--90889704 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
90889663 TAAATGGTTG
90889673 TGCTATCTTGAATGT
1 TGCTATCTTGAATGT
90889688 TGCTATCTTGAATGT
1 TGCTATCTTGAATGT
90889703 TG
1 TG
90889705 TTTTGATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.12, G:0.22, T:0.47
Consensus pattern (15 bp):
TGCTATCTTGAATGT
Found at i:90892375 original size:23 final size:25
Alignment explanation
Indices: 90892348--90892396 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
90892338 TGATGAATAA
90892348 AATATATT-CTCTATT-TTTTTTTT
1 AATATATTACTCTATTATTTTTTTT
* *
90892371 AATATTTTACTCTCTTATTTTTTTT
1 AATATATTACTCTATTATTTTTTTT
90892396 A
1 A
90892397 GTAGGAGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 6 0.27
25 9 0.41
ACGTcount: A:0.22, C:0.10, G:0.00, T:0.67
Consensus pattern (25 bp):
AATATATTACTCTATTATTTTTTTT
Found at i:90894142 original size:3 final size:3
Alignment explanation
Indices: 90894136--90894167 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
90894126 AGAAGAAGAA
90894136 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
90894168 GAATGGAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:90896452 original size:23 final size:22
Alignment explanation
Indices: 90896409--90896458 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
90896399 CAAATAAGAA
90896409 AATTATTTATTTTAATATTTAT
1 AATTATTTATTTTAATATTTAT
90896431 AATTATTT-TTTTACAATATTTAT
1 AATTATTTATTTT--AATATTTAT
90896454 AATTA
1 AATTA
90896459 AATCTAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.15
22 8 0.31
23 14 0.54
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
AATTATTTATTTTAATATTTAT
Found at i:90898316 original size:22 final size:20
Alignment explanation
Indices: 90898237--90898328 Score: 73
Period size: 21 Copynumber: 4.6 Consensus size: 20
90898227 TTTTTAGAAT
* * *
90898237 TTTTATATTTTAAAAAATAAA
1 TTTTAAATTTTTAAAAAT-TA
* * *
90898258 TTTTGATTTTTTATAAA-TA
1 TTTTAAATTTTTAAAAATTA
*
90898277 TTTTGAA-TTTTAAAAATTA
1 TTTTAAATTTTTAAAAATTA
90898296 TTTTTAAATTTTTGAAAAATTA
1 -TTTTAAATTTTT-AAAAATTA
90898318 TTTT-AATTTTT
1 TTTTAAATTTTT
90898329 TTTTATAATT
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.14
19 9 0.16
20 13 0.22
21 20 0.34
22 8 0.14
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTAAATTTTTAAAAATTA
Found at i:90898621 original size:22 final size:21
Alignment explanation
Indices: 90898596--90898637 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
90898586 TATATGCTTT
**
90898596 ATTTAGATTTATTTTAATTTAA
1 ATTTAGAGATATTTT-ATTTAA
90898618 ATTTAGAGATATTTTATTTA
1 ATTTAGAGATATTTTATTTA
90898638 TTAATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
ATTTAGAGATATTTTATTTAA
Found at i:90900880 original size:38 final size:38
Alignment explanation
Indices: 90900838--90900914 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 38
90900828 TATCTCTTCA
* * *
90900838 AAAAATACTTACGATAG-GGAAATTAATCACTATTGTCG
1 AAAAACACCTACGA-AGAGGAAATTAATCACTATTATCG
* *
90900876 AAAAACACCTACGACGAGGAGATTAATCACTATTATCG
1 AAAAACACCTACGAAGAGGAAATTAATCACTATTATCG
90900914 A
1 A
90900915 TAGTGGATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.25
Consensus pattern (38 bp):
AAAAACACCTACGAAGAGGAAATTAATCACTATTATCG
Found at i:90903753 original size:18 final size:20
Alignment explanation
Indices: 90903718--90903754 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
90903708 TATTATTTTC
*
90903718 TATTATAAAATGTTAGTTTA
1 TATTATAAAATGTAAGTTTA
90903738 TATTA-AAAAT-TAAGTTT
1 TATTATAAAATGTAAGTTT
90903755 TAAGGAGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 5 0.31
20 5 0.31
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (20 bp):
TATTATAAAATGTAAGTTTA
Found at i:90903977 original size:20 final size:21
Alignment explanation
Indices: 90903923--90903975 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
90903913 ACATCTCATA
90903923 TTAAAAAAAAAAGTCACATTC
1 TTAAAAAAAAAAGTCACATTC
90903944 TTAAAAAAAAAAGTCACATTC
1 TTAAAAAAAAAAGTCACATTC
*
90903965 TTTAAAAAAAA
1 TTAAAAAAAAA
90903976 GTATGTGCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.60, C:0.11, G:0.04, T:0.25
Consensus pattern (21 bp):
TTAAAAAAAAAAGTCACATTC
Found at i:90915045 original size:177 final size:177
Alignment explanation
Indices: 90914823--90915470 Score: 966
Period size: 177 Copynumber: 3.7 Consensus size: 177
90914813 GCCACAAGTC
* * *
90914823 TTAACCCCCTAAGCAGTAGGGTGACAGGCTGAAAATTACAGATCTTATATCCATGTATCGGCTAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* *
90914888 GGAGCAGATC-AAAGATGGTGAGTCTTATCTCCATGTATTGGCTATAGAGCAGATTTTAGCCACC
66 GGAGCAGATCGAAA-ATGGCGAGTCTTATCTCCATGTATTGACTATAGAGCAGATTTTAGCCACC
* * * *
90914952 GACCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAG-T
130 GGCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
* *
90914999 CTTAACCCCCTAAGCAGTAGGGTAACAGGC-AGAAAATAAAAGATCTTATCTCCATGTATCGGCT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGGCTA-AAAATTACAGATCTTATCTCCATGTATCGGCT
** *
90915063 ATGGAGCAGATCGAAAATGGCGAGTCTTATCTTTATGTATTGACTATGGAGCAGATTTTAGCCAC
64 ATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATTGACTATAGAGCAGATTTTAGCCAC
90915128 CGGCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
129 CGGCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
* *
90915177 TTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAAATTGCAGATCTTATCTCCATGTATCGGCTAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
** * *
90915242 GGAGCAGATCGAAAATGGCGAGTCTTATCTTTATGTATTGACTATGGAGTAGATTTTAGCCACCG
66 GGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATTGACTATAGAGCAGATTTTAGCCACCG
90915307 GCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
131 GCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
* * *
90915354 TTAACCCCCTAAACAGTAGGGTAATAGGCTAAAAATTGCAGATCTTATCTCCATGTATCGGCTAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* * * * *
90915419 GGAGTAGATC--AAATTGC-AGATCTTATCTCCATGTATCGGCTATAGAGTAGAT
66 GGAGCAGATCGAAAATGGCGAG-TCTTATCTCCATGTATTGACTATAGAGCAGAT
90915471 CGAAGATGGC
Statistics
Matches: 439, Mismatches: 27, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
174 2 0.00
175 33 0.08
177 399 0.91
178 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (177 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATTGACTATAGAGCAGATTTTAGCCACCG
GCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
Found at i:90915447 original size:43 final size:44
Alignment explanation
Indices: 90915386--90915515 Score: 192
Period size: 43 Copynumber: 3.0 Consensus size: 44
90915376 AATAGGCTAA
90915386 AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATC-
1 AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
*
90915429 AAATTGCAGATCTTATCTCCATGTATCGGCTATAGAGTAGATCG
1 AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
* * *
90915473 AAGATGGC-GAATCTTATCTCCATGTATCGGTTATGGAGCAGAT
1 AA-ATTGCAG-ATCTTATCTCCATGTATCGGCTATGGAGTAGAT
90915516 TTTAGCCATC
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
43 42 0.53
44 3 0.04
45 34 0.43
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (44 bp):
AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
Found at i:90915679 original size:45 final size:45
Alignment explanation
Indices: 90915615--90915737 Score: 201
Period size: 45 Copynumber: 2.7 Consensus size: 45
90915605 CAAATTGCAG
*
90915615 ATCTTATCTCCATGTATCGGCTATGGAGTAGATCGAAAATGGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
* * *
90915660 ATCTTATCTCCAGGTATCGGCTATGGAGCAGATTGAAGATGGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
*
90915705 ATCATATCTCCATGTATCGGCTATGGAGCAGAT
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGAT
90915738 TTTAGCCATC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (45 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
Found at i:90915746 original size:222 final size:221
Alignment explanation
Indices: 90915218--90916251 Score: 1355
Period size: 222 Copynumber: 4.7 Consensus size: 221
90915208 AAAATTGCAG
* * ** * *
90915218 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTTTATGTATTGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* * * * *
90915283 CTATGGAGTAGATTTTAGCCACCGGCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATA
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
* * ** *** * * * * *
90915348 CGAG-CTTTAACCCCCT-AAACAGTAGGGTAA-TAGGCTAAAAATTGCAGATCTTATCTCCATGT
131 CAAGTC-TTATCTTCCTGAGGTAGCAAGG-AAGCAGACT-GAAATTGCAGATCTTATCTCCATGT
*
90915410 ATCGGCTATGGAGTAGATC-AAATTGC-A
193 ATCGGCTATGGAGTAGATCAAAATGGCGA
* *
90915437 GATCTTATCTCCATGTATCGGCTATAGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCG
1 -ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCG
*
90915502 GTTATGGAGCAGATTTTAGCCATCAGCCTTATCT-TTCTGAGGTAGCAAGAGAGCAGGTTGAAGG
65 GCTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTT-TGAGGTAGCAAGAGAGCAGGTTGAAGG
*
90915566 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTCAAATTGCAGATCTTATCTCCATGTA
129 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTGCAGATCTTATCTCCATGTA
90915631 TCGGCTATGGAGTAGATCGAAAATGGCGA
194 TCGGCTATGGAGTAGATC-AAAATGGCGA
* * *
90915660 ATCTTATCTCCAGGTATCGGCTATGGAGCAGATTGAAGATGGCGAATCATATCTCCATGTATCGG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* * *
90915725 CTATGGAGCAGATTTTAGCCATCAGCTTTCTCTCTTTGAAGTAGCAAGAGAGCAGGTTGAAGGTA
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
* * *
90915790 CAAGTCTTATCTTCTTGAGGTAGCAAGAAAGCAGACTGAAATTGTAGATCTTATCTCCATGTATC
131 CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTGCAGATCTTATCTCCATGTATC
* *
90915855 GACTATGGAGTAGATCAAAGATGGTGA
196 GGCTATGGAGTAGATCAAA-ATGGCGA
* * *
90915882 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAATCATATCTCAATGTATCGG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* * * *
90915947 CTCTAGAGCAGATTTTAGCCATCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGGTA
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
90916012 CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTGCAGATCTTATCTCCATGTATC
131 CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTGCAGATCTTATCTCCATGTATC
* *
90916077 GGCTATGTAGTAGATCGAAGATGGCGA
196 GGCTATGGAGTAGATC-AAAATGGCGA
* * * *
90916104 ATCTTATCTCCAAGTATCGGCTATGGAGCAGATCGAAGATAGCGAGTCTTATCTCTATGTATCGG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* * * * * * * * *
90916169 CTATAGAGCAGATTTTAGCCACCGGCCTTGTCTCCTTGAAGTTGC-AGTGGAGAAGGTTGAA-GT
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTTTGAGGTAGCAAG-AGAGCAGGTTGAAGGT
**
90916232 CACAAACCTTATCTTCCTGA
130 -ACAAGTCTTATCTTCCTGA
90916252 AGTTGCTATA
Statistics
Matches: 723, Mismatches: 79, Indels: 22
0.88 0.10 0.03
Matches are distributed among these distances:
219 2 0.00
220 168 0.23
221 18 0.02
222 530 0.73
223 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (221 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTGCAGATCTTATCTCCATGTATC
GGCTATGGAGTAGATCAAAATGGCGA
Found at i:90915906 original size:45 final size:45
Alignment explanation
Indices: 90915837--90915959 Score: 167
Period size: 45 Copynumber: 2.7 Consensus size: 45
90915827 GAAATTGTAG
* * *
90915837 ATCTTATCTCCATGTATCGACTATGGAGTAGATC-AAAGATGGTGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAA-ATGGCGA
90915882 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
* * * *
90915927 ATCATATCTCAATGTATCGGCTCTAGAGCAGAT
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGAT
90915960 TTTAGCCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
45 67 0.96
46 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (45 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
Found at i:90916123 original size:45 final size:45
Alignment explanation
Indices: 90916059--90916181 Score: 183
Period size: 45 Copynumber: 2.7 Consensus size: 45
90916049 GAAATTGCAG
* * *
90916059 ATCTTATCTCCATGTATCGGCTATGTAGTAGATCGAAGATGGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATAGCGA
*
90916104 ATCTTATCTCCAAGTATCGGCTATGGAGCAGATCGAAGATAGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATAGCGA
* * *
90916149 GTCTTATCTCTATGTATCGGCTATAGAGCAGAT
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGAT
90916182 TTTAGCCACC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATAGCGA
Found at i:90919896 original size:93 final size:93
Alignment explanation
Indices: 90919787--90919958 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
90919777 GCCCATAAGT
* * * *
90919787 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
90919852 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
90919880 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
90919945 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
90919959 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:90919954 original size:46 final size:46
Alignment explanation
Indices: 90919779--90919954 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
90919769 TGTAACCCGC
* * * *
90919779 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
90919825 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** * *
90919871 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
90919918 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
90919955 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:90926730 original size:20 final size:21
Alignment explanation
Indices: 90926703--90926746 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
90926693 TGTTAGGTTA
*
90926703 TTTTTAAA-ATTA-TTTTATT
1 TTTTTAAACATGATTTTTATT
90926722 TTTTATAAACATGATTTTTATT
1 TTTT-TAAACATGATTTTTATT
90926744 TTT
1 TTT
90926747 ATTTTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 4 0.19
21 3 0.14
22 10 0.48
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTTAAACATGATTTTTATT
Found at i:90934008 original size:15 final size:14
Alignment explanation
Indices: 90933988--90934035 Score: 55
Period size: 13 Copynumber: 3.4 Consensus size: 14
90933978 TGAAAATGGT
90933988 ATAATAAGTATAAAA
1 ATAATAA-TATAAAA
*
90934003 ATAAT-ATACAAAA
1 ATAATAATATAAAA
90934016 A-AATAATATAATAA
1 ATAATAATATAA-AA
90934030 ATAATA
1 ATAATA
90934036 GGAAAATCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 3 0.11
13 12 0.43
14 4 0.14
15 9 0.32
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (14 bp):
ATAATAATATAAAA
Found at i:90934081 original size:22 final size:23
Alignment explanation
Indices: 90934053--90934100 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
90934043 CGCTAAAATG
90934053 ATAGTAAAAATAAATAAATAA-A
1 ATAGTAAAAATAAATAAATAATA
* * *
90934075 ATAGTAATAATAGATTAATAATA
1 ATAGTAAAAATAAATAAATAATA
90934098 ATA
1 ATA
90934101 ATATCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (23 bp):
ATAGTAAAAATAAATAAATAATA
Found at i:90935626 original size:135 final size:135
Alignment explanation
Indices: 90935425--90935777 Score: 494
Period size: 135 Copynumber: 2.6 Consensus size: 135
90935415 GATCTACTGT
* * * *
90935425 AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATGAGATCTGGTATGTTTAGCCTGTTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
* * * * *
90935490 TGCTCAATGAAGATAAGGCTGGTGGCTGAAATCTGTTCCATTGCCGATACATGGAGATAAGACTC
66 TGCTCAGTGAAGATAAGGCTGCTGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGACTC
90935555 GCCAA
131 GCCAA
* *
90935560 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTATGTTTAGCCTACTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
* * * * * *
90935625 TGCTCAGTGAAGATAAGGTTGCTGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTC
66 TGCTCAGTGAAGATAAGGCTGCTGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGACTC
*
90935690 TCCAA
131 GCCAA
* * *
90935695 AATTCGATCTGCTTCACTCCTGCCCAGTGAAGATAAGATCTGGTA--TTTATCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
*
90935758 TGCCCAGTGAAGATAAGGCT
66 TGCTCAGTGAAGATAAGGCT
90935778 AATAATATCT
Statistics
Matches: 193, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
133 34 0.18
135 159 0.82
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30
Consensus pattern (135 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
TGCTCAGTGAAGATAAGGCTGCTGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGACTC
GCCAA
Found at i:90935729 original size:46 final size:43
Alignment explanation
Indices: 90935679--90935774 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
90935669 CGGTACGTGG
*
90935679 AGATAAGATTCTCCAAAATTCGAT-CTGCTTCACTCCTGCCCAGTGA
1 AGATAAGA-TCT--AAAATT-GATCCTGCTCCACTCCTGCCCAGTGA
*** *
90935725 AGATAAGATCTGGTATTTATCCTGCTCCACTCCTGCCCAGTGA
1 AGATAAGATCTAAAATTGATCCTGCTCCACTCCTGCCCAGTGA
90935768 AGATAAG
1 AGATAAG
90935775 GCTAATAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.05
43 31 0.70
45 3 0.07
46 8 0.18
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
AGATAAGATCTAAAATTGATCCTGCTCCACTCCTGCCCAGTGA
Found at i:90946987 original size:25 final size:25
Alignment explanation
Indices: 90946953--90947016 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
90946943 TCTGTAAAAT
90946953 CAATTGAAACGGTGCGTGGT-GGAAA
1 CAATTGAAACGGTGCGTGGTAGG-AA
90946978 CAATTGAAACGGTGCGTGGTAGGAA
1 CAATTGAAACGGTGCGTGGTAGGAA
90947003 CAATTGAAACGGTG
1 CAATTGAAACGGTG
90947017 AGTTTTGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 36 0.95
26 2 0.05
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.20
Consensus pattern (25 bp):
CAATTGAAACGGTGCGTGGTAGGAA
Found at i:90948183 original size:7 final size:7
Alignment explanation
Indices: 90948171--90948299 Score: 66
Period size: 7 Copynumber: 18.1 Consensus size: 7
90948161 ACTAATTAAT
90948171 CTAAACC
1 CTAAACC
90948178 CTAAACC
1 CTAAACC
*
90948185 TCTTAACTC
1 -CTAAAC-C
*
90948194 CT-ATCC
1 CTAAACC
*
90948200 CATAAACA
1 C-TAAACC
90948208 CTAAACC
1 CTAAACC
*
90948215 CTAACCC
1 CTAAACC
*
90948222 CTTAACC
1 CTAAACC
*
90948229 CTTAACC
1 CTAAACC
*
90948236 CCAAACC
1 CTAAACC
*
90948243 CTTACACC
1 C-TAAACC
*
90948251 TTAAACTC
1 CTAAAC-C
90948259 C--AACC
1 CTAAACC
*
90948264 CTAACCC
1 CTAAACC
90948271 CTAAACC
1 CTAAACC
* *
90948278 TTAAATC
1 CTAAACC
* *
90948285 ATAATCC
1 CTAAACC
90948292 CTAAACC
1 CTAAACC
90948299 C
1 C
90948300 ATAATTCATC
Statistics
Matches: 90, Mismatches: 24, Indels: 16
0.69 0.18 0.12
Matches are distributed among these distances:
5 2 0.02
6 5 0.06
7 67 0.74
8 15 0.17
9 1 0.01
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:90948368 original size:21 final size:21
Alignment explanation
Indices: 90948342--90948426 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
90948332 ACTCCTAAAC
*
90948342 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
90948363 CTTAAACCATAGTTAACTTATAAAT
1 CTTAAACCATA---AAC-CATATAT
* *
90948388 CATAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
*
90948409 ATTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
90948427 AACTATAATG
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
21 30 0.60
22 3 0.06
24 3 0.06
25 14 0.28
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:90948379 original size:46 final size:46
Alignment explanation
Indices: 90948326--90948419 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
90948316 CTTCAAATAC
* * *
90948326 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
* *
90948372 TAGTTAACTTATAAATCATAAACCCTAAACCATATATATTAAACCA
1 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
90948418 TA
1 TA
90948420 AACCATAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
Found at i:90948721 original size:42 final size:40
Alignment explanation
Indices: 90948644--90948741 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 40
90948634 TCGCGGCGTT
* *
90948644 AAACGCCGCTATTGCTCTATTTTTCGCAGCATTTTTTGGTAA
1 AAACGCAGCTATTGCTCTATTTTTAGCAGCA-TTTTTGGT-A
* * ** *
90948686 AAATGCTGCTATTGCTCTATTTTTAGTGGCGTTTTTGGTA
1 AAACGCAGCTATTGCTCTATTTTTAGCAGCATTTTTGGTA
90948726 AAACGCAGCTATTGCT
1 AAACGCAGCTATTGCT
90948742 ATGTGTTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 15 0.31
41 8 0.17
42 25 0.52
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.41
Consensus pattern (40 bp):
AAACGCAGCTATTGCTCTATTTTTAGCAGCATTTTTGGTA
Found at i:90948790 original size:12 final size:12
Alignment explanation
Indices: 90948775--90948800 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90948765 GTTTTTTAAT
90948775 AAAACGCCGCTA
1 AAAACGCCGCTA
90948787 AAAACGCCGCTA
1 AAAACGCCGCTA
90948799 AA
1 AA
90948801 GATCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:90949499 original size:21 final size:21
Alignment explanation
Indices: 90949473--90949517 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
90949463 GCTGGCTCAT
*
90949473 CATGTTGTTCTGTGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
*
90949494 CATGTTTTTCTGGGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
90949515 CAT
1 CAT
90949518 TTGATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:90954177 original size:15 final size:14
Alignment explanation
Indices: 90954129--90954204 Score: 70
Period size: 13 Copynumber: 5.3 Consensus size: 14
90954119 ATTAAATGAA
90954129 AATAA-ATAAAAAT
1 AATAATATAAAAAT
90954142 AATAATGA-AAATGATAT
1 AATAAT-ATAAA--A-AT
90954159 AATAAGTATAAAAAT
1 AATAA-TATAAAAAT
90954174 AAT-ATATAAAAA-
1 AATAATATAAAAAT
90954186 AATAATATAATAAAT
1 AATAATATAA-AAAT
90954201 AATA
1 AATA
90954205 GGAAAATCGC
Statistics
Matches: 53, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
12 3 0.06
13 19 0.36
14 7 0.13
15 10 0.19
16 2 0.04
17 8 0.15
18 4 0.08
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (14 bp):
AATAATATAAAAAT
Found at i:90954904 original size:61 final size:61
Alignment explanation
Indices: 90954809--90954931 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
90954799 AAAGAAAGTT
90954809 ACAGGAAGAAGAATGAAAAATCACCTTTCAAACCTTAGACCAGATTTTTGATTTACTTCCG
1 ACAGGAAGAAGAATGAAAAATCACCTTTCAAACCTTAGACCAGATTTTTGATTTACTTCCG
90954870 ACAGGAAGAAGAATGAAAAATCACCTTTCAAACCTTAGACCAGATTTTTGATTTACTTCCG
1 ACAGGAAGAAGAATGAAAAATCACCTTTCAAACCTTAGACCAGATTTTTGATTTACTTCCG
90954931 A
1 A
90954932 TTTTTCTCTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.28
Consensus pattern (61 bp):
ACAGGAAGAAGAATGAAAAATCACCTTTCAAACCTTAGACCAGATTTTTGATTTACTTCCG
Found at i:90958432 original size:19 final size:20
Alignment explanation
Indices: 90958408--90958449 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
90958398 TATAAATAAA
*
90958408 ATAATAAATATGTA-ATTAT
1 ATAATAAAAATGTATATTAT
90958427 ATAATAAAAATGTATATTAT
1 ATAATAAAAATGTATATTAT
90958447 ATA
1 ATA
90958450 TATCATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
ATAATAAAAATGTATATTAT
Found at i:90961850 original size:25 final size:24
Alignment explanation
Indices: 90961822--90961878 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
90961812 ATAAAAAAGG
*
90961822 TTTAAAATAGATACTAAAAAAACAA
1 TTTAAAATAAATACT-AAAAAACAA
* * *
90961847 TTTAAAGTAAATAGTATAAAACAA
1 TTTAAAATAAATACTAAAAAACAA
90961871 TTTAAAAT
1 TTTAAAAT
90961879 CATTAATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
TTTAAAATAAATACTAAAAAACAA
Found at i:90961888 original size:24 final size:24
Alignment explanation
Indices: 90961793--90961889 Score: 68
Period size: 24 Copynumber: 3.9 Consensus size: 24
90961783 AATCAACGAT
* * *
90961793 AATTTTAAATGAATAATATATAAAA
1 AATTTAAAATAAATAATATA-AAAC
* * *
90961818 AAGGTTTAAAATAGATACTAAAAAAAC
1 AA--TTTAAAATAAATAAT-ATAAAAC
* *
90961845 AATTTAAAGTAAATAGTATAAAAC
1 AATTTAAAATAAATAATATAAAAC
* *
90961869 AATTTAAAATCATTAATATAA
1 AATTTAAAATAAATAATATAA
90961890 TATGTGAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 7
0.72 0.18 0.09
Matches are distributed among these distances:
24 23 0.42
25 14 0.25
27 16 0.29
28 2 0.04
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
AATTTAAAATAAATAATATAAAAC
Found at i:90961942 original size:30 final size:31
Alignment explanation
Indices: 90961883--90961965 Score: 82
Period size: 30 Copynumber: 2.7 Consensus size: 31
90961873 TAAAATCATT
* * * *
90961883 AATATAATATGTGAAAAATAAAT-TTTAAAAT
1 AATATAATATAT-AAAAATATATGTATAAAAC
90961914 AA-ATAATATATAAAAATATATGTATAAAAC
1 AATATAATATATAAAAATATATGTATAAAAC
* *
90961944 AATTTAATATA-AATAATATATG
1 AATATAATATATAAAAATATATG
90961966 AAATCTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 9 0.20
30 26 0.59
31 9 0.20
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (31 bp):
AATATAATATATAAAAATATATGTATAAAAC
Found at i:90962010 original size:22 final size:23
Alignment explanation
Indices: 90961978--90962026 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
90961968 ATCTTAAAGT
90961978 AAAT-AATAATAAAAAGG-TTTA
1 AAATAAATAATAAAAAGGATTTA
*
90961999 CAATAAATAATAAAAAGGATTTA
1 AAATAAATAATAAAAAGGATTTA
90962022 AAATA
1 AAATA
90962027 GTTAACATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 13 0.54
23 8 0.33
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (23 bp):
AAATAAATAATAAAAAGGATTTA
Found at i:90962170 original size:26 final size:26
Alignment explanation
Indices: 90962065--90962183 Score: 98
Period size: 26 Copynumber: 4.5 Consensus size: 26
90962055 AACATATAAG
90962065 AAATAAATAATATATATACGAAATGGTTTA
1 AAATAAATAATATATATA--AAA--GTTTA
*** *
90962095 AAATAAA-AAGGGATATAAAAATTTCA
1 AAATAAATAATATATATAAAAGTTT-A
* * *
90962121 AAATAAATAATATGTATGATAGTTTA
1 AAATAAATAATATATATAAAAGTTTA
*
90962147 GAATAAATAATATATATAAAAG-TTA
1 AAATAAATAATATATATAAAAGTTTA
*
90962172 AAATGAATAATA
1 AAATAAATAATA
90962184 GTTTAAAATA
Statistics
Matches: 70, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
25 16 0.23
26 27 0.39
27 13 0.19
29 7 0.10
30 7 0.10
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATAAATAATATATATAAAAGTTTA
Found at i:90962198 original size:17 final size:16
Alignment explanation
Indices: 90962158--90962200 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
90962148 AATAAATAAT
*
90962158 ATATATAAAAGTTAAA
1 ATATATAATAGTTAAA
90962174 ATGA-ATAATAGTTTAAA
1 AT-ATATAATAG-TTAAA
90962191 ATATATAATA
1 ATATATAATA
90962201 TGTAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (16 bp):
ATATATAATAGTTAAA
Found at i:90962223 original size:42 final size:42
Alignment explanation
Indices: 90962139--90962278 Score: 109
Period size: 42 Copynumber: 3.1 Consensus size: 42
90962129 AATATGTATG
* * * *
90962139 ATAGTTTAGAATAAATAATATATATAAAAGTTAAAATGAATA
1 ATAGTTTAAAATAAATAATATATAAAAAAATTAAAATAAATA
* *
90962181 ATAGTTTAAAATATATAATATGTAAAAAAATTAAATTAAATAACGATA
1 ATAGTTTAAAATAAATAATATATAAAAAAATT--A--AAATAA--ATA
* *
90962229 AAACGATTTAAAATAAATAATATAAGAAAACAAACTTAAAATAAATA
1 ATA-G-TTTAAAATAAATAATAT-ATAAAA-AAA-TTAAAATAAATA
90962276 ATA
1 ATA
90962279 AGACAGTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
42 27 0.36
44 1 0.01
46 5 0.07
47 5 0.07
48 5 0.07
49 7 0.09
50 16 0.21
51 5 0.07
52 3 0.04
53 2 0.03
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (42 bp):
ATAGTTTAAAATAAATAATATATAAAAAAATTAAAATAAATA
Found at i:90966571 original size:48 final size:48
Alignment explanation
Indices: 90966500--90966597 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
90966490 GATTGACATT
90966500 TTAATGAAGAAAGATGTAACGATTATCATGAGATAAAATAGGATCATA
1 TTAATGAAGAAAGATGTAACGATTATCATGAGATAAAATAGGATCATA
90966548 TTAATGAAGAAAGATGTAACGATTATCATGAGATAAAATAGGATCATA
1 TTAATGAAGAAAGATGTAACGATTATCATGAGATAAAATAGGATCATA
90966596 TT
1 TT
90966598 GGGAGAACGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (48 bp):
TTAATGAAGAAAGATGTAACGATTATCATGAGATAAAATAGGATCATA
Found at i:90966578 original size:24 final size:24
Alignment explanation
Indices: 90966503--90966578 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
90966493 TGACATTTTA
90966503 ATGAAGAAAGATGTAACGATTATC
1 ATGAAGAAAGATGTAACGATTATC
* * * *
90966527 ATG-AGATAAAATAGGATC-A-TATTA
1 ATGAAGA-AAGAT-GTAACGATTA-TC
90966551 ATGAAGAAAGATGTAACGATTATC
1 ATGAAGAAAGATGTAACGATTATC
90966575 ATGA
1 ATGA
90966579 GATAAAATAG
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
23 8 0.21
24 22 0.58
25 8 0.21
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.26
Consensus pattern (24 bp):
ATGAAGAAAGATGTAACGATTATC
Found at i:90970579 original size:12 final size:12
Alignment explanation
Indices: 90970542--90970602 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 12
90970532 TTTTTCTCTC
*
90970542 TCAAACTCTTTT
1 TCAATCTCTTTT
* **
90970554 TCATTCTCCGTT
1 TCAATCTCTTTT
*
90970566 TCAATTTCTTTT
1 TCAATCTCTTTT
*
90970578 TCAATCTCATTT
1 TCAATCTCTTTT
*
90970590 TCACTCTCTTTT
1 TCAATCTCTTTT
90970602 T
1 T
90970603 GTTCTTTTTC
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.16, C:0.26, G:0.02, T:0.56
Consensus pattern (12 bp):
TCAATCTCTTTT
Found at i:90970591 original size:24 final size:24
Alignment explanation
Indices: 90970542--90970602 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
90970532 TTTTTCTCTC
* * *
90970542 TCAAACTCTTTTTCATTCTCCGTT
1 TCAATCTCTTTTTCAATCTCAGTT
* *
90970566 TCAATTTCTTTTTCAATCTCATTT
1 TCAATCTCTTTTTCAATCTCAGTT
*
90970590 TCACTCTCTTTTT
1 TCAATCTCTTTTT
90970603 GTTCTTTTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.16, C:0.26, G:0.02, T:0.56
Consensus pattern (24 bp):
TCAATCTCTTTTTCAATCTCAGTT
Found at i:90975084 original size:24 final size:23
Alignment explanation
Indices: 90975052--90975102 Score: 93
Period size: 24 Copynumber: 2.2 Consensus size: 23
90975042 ATGTTTAGAT
90975052 CACATTGTATGTAATTTCCATGAC
1 CACATTGTATGTAATTTCCAT-AC
90975076 CACATTGTATGTAATTTCCATAC
1 CACATTGTATGTAATTTCCATAC
90975099 CACA
1 CACA
90975103 CATCCATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (23 bp):
CACATTGTATGTAATTTCCATAC
Found at i:90977417 original size:27 final size:27
Alignment explanation
Indices: 90977346--90977418 Score: 65
Period size: 32 Copynumber: 2.5 Consensus size: 27
90977336 TGTCTTGAAT
* *
90977346 TTGTTCGATATTGATTATGTTTTAAGC
1 TTGTTGGATATTTATTATGTTTTAAGC
* *
90977373 TTGTTAGATATTGAATTTATTATGTTTTAAGG
1 TTGTT-G-GA-T--ATTTATTATGTTTTAAGC
90977405 TTGTTGGATATTTA
1 TTGTTGGATATTTA
90977419 AATGATTGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
27 10 0.28
29 2 0.06
30 2 0.06
31 1 0.03
32 21 0.58
ACGTcount: A:0.25, C:0.03, G:0.19, T:0.53
Consensus pattern (27 bp):
TTGTTGGATATTTATTATGTTTTAAGC
Found at i:90978643 original size:13 final size:13
Alignment explanation
Indices: 90978625--90978671 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
90978615 ATGTAAAAAT
90978625 AATTTAAAATATA
1 AATTTAAAATATA
* *
90978638 AATTTATTAATAAA
1 AATTTA-AAATATA
90978652 CAATTTAAAATATA
1 -AATTTAAAATATA
90978666 AATTTA
1 AATTTA
90978672 TTAACAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 12 0.43
14 10 0.36
15 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTTAAAATATA
Found at i:90978825 original size:14 final size:14
Alignment explanation
Indices: 90978788--90978818 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
90978778 CCAGAAAAGT
90978788 AAATCATTTTTCAA
1 AAATCATTTTTCAA
90978802 AAATCATTTTTCAA
1 AAATCATTTTTCAA
90978816 AAA
1 AAA
90978819 ATATTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATCATTTTTCAA
Found at i:90981334 original size:21 final size:21
Alignment explanation
Indices: 90981310--90981351 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
90981300 ATACATACTT
90981310 ATATTATCATTATAAAAGTAG
1 ATATTATCATTATAAAAGTAG
90981331 ATATTATCATTATAAAAGTAG
1 ATATTATCATTATAAAAGTAG
90981352 CGAATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATTATCATTATAAAAGTAG
Found at i:90983420 original size:6 final size:7
Alignment explanation
Indices: 90983401--90983426 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
90983391 ACCATCCCAA
90983401 TATTTTT
1 TATTTTT
90983408 TATTTTT
1 TATTTTT
90983415 TATTTTT
1 TATTTTT
90983422 TATTT
1 TATTT
90983427 ATGCTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TATTTTT
Found at i:90983518 original size:23 final size:23
Alignment explanation
Indices: 90983488--90983544 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
90983478 AATATAAACA
90983488 AAGAGAAAGTACTATTTTTGTGT
1 AAGAGAAAGTACTATTTTTGTGT
90983511 AAGAGAAAGTACTATTTTTGTGT
1 AAGAGAAAGTACTATTTTTGTGT
90983534 AAGCA-AAAGTA
1 AAG-AGAAAGTA
90983545 TACCTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (23 bp):
AAGAGAAAGTACTATTTTTGTGT
Found at i:90986615 original size:24 final size:25
Alignment explanation
Indices: 90986575--90986625 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
90986565 ATTCATTTAT
90986575 TTATTTTAAAATATTTTATTAT-ATG
1 TTATTTTAAAATATTTTA-TATGATG
90986600 TTATTTT-AAATATTTTATATGATG
1 TTATTTTAAAATATTTTATATGATG
90986624 TT
1 TT
90986626 TACGTTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 3 0.12
24 15 0.60
25 7 0.28
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (25 bp):
TTATTTTAAAATATTTTATATGATG
Found at i:90991350 original size:6 final size:6
Alignment explanation
Indices: 90991328--90991361 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
90991318 CCTTTCATTA
*
90991328 TTTATT TATTCTT TTTATT TTTATT TTTATT TTT
1 TTTATT T-TTATT TTTATT TTTATT TTTATT TTT
90991362 GGGTTGAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:90995019 original size:4 final size:4
Alignment explanation
Indices: 90995005--90995039 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
90994995 TTTAAATTTA
*
90995005 AATT AATTT AATT AATT AATA AATT AATT AATT AA
1 AATT AA-TT AATT AATT AATT AATT AATT AATT AA
90995040 AAATTATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (4 bp):
AATT
Found at i:90995031 original size:16 final size:15
Alignment explanation
Indices: 90995012--90995045 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
90995002 TTAAATTAAT
90995012 TTAATTAATTAATAAA
1 TTAATTAATTAA-AAA
90995028 TTAATTAATTAAAAA
1 TTAATTAATTAAAAA
90995043 TTA
1 TTA
90995046 TTCTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAATTAATTAAAAA
Found at i:90996659 original size:16 final size:16
Alignment explanation
Indices: 90996635--90996665 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90996625 TAAATTATGT
*
90996635 ATATTAAAATAAAAAC
1 ATATAAAAATAAAAAC
90996651 ATATAAAAATAAAAA
1 ATATAAAAATAAAAA
90996666 TGAAGTTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
ATATAAAAATAAAAAC
Found at i:91001184 original size:17 final size:19
Alignment explanation
Indices: 91001147--91001184 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91001137 GAAATAAAAA
91001147 TATAAAAATCAAATATTTT
1 TATAAAAATCAAATATTTT
*
91001166 TATAAACAT-AAAT-TTTT
1 TATAAAAATCAAATATTTT
91001183 TA
1 TA
91001185 ATTTTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
TATAAAAATCAAATATTTT
Found at i:91001373 original size:11 final size:11
Alignment explanation
Indices: 91001357--91001385 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
91001347 AAAAAATTGG
91001357 ATGATGACATT
1 ATGATGACATT
91001368 ATGATGACATT
1 ATGATGACATT
91001379 ATGATGA
1 ATGATGA
91001386 TTTGATCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (11 bp):
ATGATGACATT
Found at i:91007352 original size:40 final size:40
Alignment explanation
Indices: 91007290--91007506 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
91007280 AAGCCAAGTA
* * *
91007290 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
91007329 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
91007369 CCTTCGGGACTTAGCCCGGACATAATAACTCACACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
91007409 CCTTCGGGAATTAGCCCGGGTATAATAACTCGCAC-AATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAA-TG
* * *
91007449 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
91007488 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91007507 TTATCATCCG
Statistics
Matches: 153, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 43 0.28
40 109 0.71
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:91007424 original size:80 final size:79
Alignment explanation
Indices: 91007323--91007506 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 79
91007313 GCTACTCGCT
*
91007323 CGAATGCCTTCGGGACA-TAGCCCGGATATAGTAACTCGCACCAA-TGCCTTCGGGACTTAGCCC
1 CGAATGCCTTCGGGA-ATTAGCCCGGATATAATAACTCGCA-CAATTGCCTTCGGG-CTTAGCCC
91007386 GGACA-TAATAACTCA-CA
63 GGA-ATTAATAACT-AGCA
*
91007403 CGAATGCCTTCGGGAATTAGCCCGGGTATAATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGA
1 CGAATGCCTTCGGGAATTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGA
* *
91007468 ATTAGTCACTAGCA
66 ATTAATAACTAGCA
* *
91007482 CAAATGCCTTCGGGACTTAGCCCGG
1 CGAATGCCTTCGGGAATTAGCCCGG
91007507 TTATCATCCG
Statistics
Matches: 94, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
78 2 0.02
79 46 0.49
80 46 0.49
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (79 bp):
CGAATGCCTTCGGGAATTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGA
ATTAATAACTAGCA
Found at i:91018823 original size:44 final size:46
Alignment explanation
Indices: 91018722--91018839 Score: 123
Period size: 44 Copynumber: 2.6 Consensus size: 46
91018712 TGGAGCGGGG
* * * *
91018722 CAGATCAAATTTCGGTAGATCTTATCTTCGCTGAGCAGGAATGGAG
1 CAGATCAAATTTCAGCAGATCTTATCTCCGCTGAGCAGGAATGGAA
** * *
91018768 TGGATCAAATTTTAGCAGATCTTATC-CCGCTG-GCAGGAGTGGAA
1 CAGATCAAATTTCAGCAGATCTTATCTCCGCTGAGCAGGAATGGAA
* * *
91018812 CAGATTAAATTTCGGCAGATCCTATCTC
1 CAGATCAAATTTCAGCAGATCTTATCTC
91018840 TCTAAGCAAT
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
44 30 0.53
45 6 0.11
46 21 0.37
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (46 bp):
CAGATCAAATTTCAGCAGATCTTATCTCCGCTGAGCAGGAATGGAA
Found at i:91019068 original size:44 final size:44
Alignment explanation
Indices: 91019005--91019127 Score: 185
Period size: 44 Copynumber: 2.8 Consensus size: 44
91018995 ATGGCAAGCT
* *
91019005 TTATCTCTCTGAGCAGCAGTGGAGCAAGCTGAAGATTACAGATC
1 TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
91019049 TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
1 TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
* * *
91019093 TTATCTTCCTAAGCAGCAGCGGAGC-AGATCGAAGA
1 TTATCTCCCTGAGCAGCAGTGGAGCAAGAT-GAAGA
91019128 CGATGAGCAG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 4 0.05
44 69 0.95
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (44 bp):
TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
Found at i:91019127 original size:88 final size:88
Alignment explanation
Indices: 91019016--91019354 Score: 205
Period size: 88 Copynumber: 3.8 Consensus size: 88
91019006 TATCTCTCTG
* * *
91019016 AGCAGCAGTGGAGCA-AGCTGAAGATTA-CAGATCTTATCTCCCTGAGCAGCAGTGGAGCAAGAT
1 AGCAGCAGCGGAGCAGATC-GAAGATTAGCAGATCTTATCTCCCTAAGCAGCAG-GGAGCAAGAT
91019079 -GAAGATTACAGATCTTATCTTCCTA
64 CGAAGATTACA-ATCTTATCTTCCTA
* * * * * *
91019104 AGCAGCAGCGGAGCAGATCGAAGACGATGAGCAG-GCTTTAACTCCCTAAGTAGTAGGGTA-AAA
1 AGCAGCAGCGGAGCAGATCG-A-A-GATTAGCAGATC-TTATCTCCCTAAGCAGCAGGG-AGCAA
* * * *
91019167 GGCTGGAGGATTACAACATCTTATCTCCCTA
61 -GATCGAAGATTAC-A-ATCTTATCTTCCTA
* * * * * ** * *
91019198 AGCAGTAGTGGAGCAGATCGAAGA-TAGCAAACCTTATCTCTCTGAAGTTGCAGAGAGCAAG-TT
1 AGCAGCAGCGGAGCAGATCGAAGATTAGCAGATCTTATCTCCCT-AAGCAGCAGGGAGCAAGATC
91019261 GAAG-TTACAAGTCTTATC-TCTCTGA
65 GAAGATTACAA-TCTTATCTTC-CT-A
* * * * * *
91019286 AGCCGTAGCGGAGCATATTGAAGA-TAACAGATCTTATCTCCCTAAGCAGTAGTGGAGC-AGATC
1 AGCAGCAGCGGAGCAGATCGAAGATTAGCAGATCTTATCTCCCTAAGCAGCAG-GGAGCAAGATC
91019349 GAAGAT
65 GAAGAT
91019355 ACCAAACTTT
Statistics
Matches: 192, Mismatches: 40, Indels: 37
0.71 0.15 0.14
Matches are distributed among these distances:
86 2 0.01
87 18 0.09
88 64 0.33
89 8 0.04
90 15 0.08
91 22 0.11
92 22 0.11
93 9 0.05
94 32 0.17
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (88 bp):
AGCAGCAGCGGAGCAGATCGAAGATTAGCAGATCTTATCTCCCTAAGCAGCAGGGAGCAAGATCG
AAGATTACAATCTTATCTTCCTA
Found at i:91019256 original size:44 final size:44
Alignment explanation
Indices: 91019208--91019407 Score: 104
Period size: 44 Copynumber: 4.5 Consensus size: 44
91019198 AGCAGTAGTG
*
91019208 GAGCAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAG-A
1 GAGCAGATCGAAGATA-CAAACCTTATCTCTCTGAAGCTGCAGCA
* * ** * * *
91019252 GAGCA-AGTTGAAGTTACAAGTCTTATCTCTCTGAAGCCGTAGCG
1 GAGCAGA-TCGAAGATACAAACCTTATCTCTCTGAAGCTGCAGCA
* * * * * * * **
91019296 GAGCATATTGAAGATAACAGATCTTATCTCCCT-AAGCAGTAGTG
1 GAGCAGATCGAAGAT-ACAAACCTTATCTCTCTGAAGCTGCAGCA
* * * * *
91019340 GAGCAGATCGAAGATACCAAACTTTGTTTCTTTGAAGTTGCAG-A
1 GAGCAGATCGAAGATA-CAAACCTTATCTCTCTGAAGCTGCAGCA
* *
91019384 GAGCA-AGTTGAGGATACAAACCTT
1 GAGCAGA-TCGAAGATACAAACCTT
91019408 GTGTCCCTAA
Statistics
Matches: 119, Mismatches: 30, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
43 31 0.26
44 67 0.56
45 21 0.18
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (44 bp):
GAGCAGATCGAAGATACAAACCTTATCTCTCTGAAGCTGCAGCA
Found at i:91021025 original size:11 final size:11
Alignment explanation
Indices: 91021011--91021036 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91021001 TATTGTATTA
91021011 TTTTTTTATAT
1 TTTTTTTATAT
91021022 TTTTTTTATAT
1 TTTTTTTATAT
91021033 TTTT
1 TTTT
91021037 AATACATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTATAT
Found at i:91024628 original size:3 final size:3
Alignment explanation
Indices: 91024620--91024765 Score: 70
Period size: 3 Copynumber: 47.7 Consensus size: 3
91024610 ATAGTATGAC
* * *
91024620 AAT AAT AAT AAC AAT AAT AAT AA- ACA- AAT AAAT AAAT AAT GAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT -AAT -AAT AAT AAT AAT
* * * * *
91024666 AAA AAT AAT AGT AA- AGAA AAT AA- AGAT AA- AATT AAT AAT GAT ACT
1 AAT AAT AAT AAT AAT A-AT AAT AAT A-AT AAT AA-T AAT AAT AAT AAT
* * *
91024711 AACG AAT -AT AAGT GAT AAT AGAA AAT AAT AAT AAT AAT AAT AAT AAT
1 AA-T AAT AAT AA-T AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
91024758 AAT AAT AA
1 AAT AAT AA
91024766 ATTAATAAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
2 8 0.07
3 86 0.77
4 17 0.15
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:91024876 original size:3 final size:3
Alignment explanation
Indices: 91024870--91025216 Score: 126
Period size: 3 Copynumber: 115.0 Consensus size: 3
91024860 TAAAAAAAAT
* * * * *
91024870 ATA ATA ATA AT- ATA ATA GTA ATA ATA ATT ACA AAA ATG ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
91024916 ATA A-A ATG ATA ATA AGA ATA ATA ATA ATA A-A GCA-A AGA ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA A-TA
* ** * * *
91024961 A-A ATG ATA CCGGA ATA ATGA A-A ATA ATA CCTTA ATA ACA ATG AT-
1 ATA ATA ATA --ATA ATA AT-A ATA ATA ATA --ATA ATA ATA ATA ATA
* * * * * *
91025005 ATG GTA ATA ATA ATA GTA ATA GAGA ACA ACA ATA CATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA ATA
* * **
91025053 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TGTA AAA AGGG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA A-TA
* * * * *
91025100 A-A ATA ATA AT- ATA GTA A-A ATA ATA ATA AT- ATG TTA ATA AGA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
91025144 ATA GTA GTA GTA ATA ATA GTTA ATG ATA ATA AAA ATA CATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * *
91025191 GTA A-A ACA ATA ATA GTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
91025217 TATTAAATTG
Statistics
Matches: 256, Mismatches: 61, Indels: 54
0.69 0.16 0.15
Matches are distributed among these distances:
2 23 0.09
3 209 0.82
4 19 0.07
5 5 0.02
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:91024997 original size:20 final size:20
Alignment explanation
Indices: 91024952--91024990 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
91024942 ATAAAGCAAA
* *
91024952 GAATAATTAAAATGATACCG
1 GAATAATGAAAATAATACCG
91024972 GAATAATGAAAATAATACC
1 GAATAATGAAAATAATACC
91024991 TTAATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (20 bp):
GAATAATGAAAATAATACCG
Found at i:91025897 original size:16 final size:15
Alignment explanation
Indices: 91025876--91025909 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
91025866 AATGGGTTCG
91025876 AAAAAGAAAGAAAAAT
1 AAAAAGAAA-AAAAAT
*
91025892 AAAAAGAAAATAAAT
1 AAAAAGAAAAAAAAT
91025907 AAA
1 AAA
91025910 CCTTTATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAAAGAAAAAAAAT
Found at i:91038689 original size:127 final size:128
Alignment explanation
Indices: 91038509--91038834 Score: 423
Period size: 127 Copynumber: 2.6 Consensus size: 128
91038499 AACGAAAAAC
* * *
91038509 CGAAACCCAACACGGTAGGGCA-GATTCCTCG-ATCTTCCAAACATTGAACATTGCCTTG-CTTA
1 CGAAACCCAGCACGGTAGGGCACGATTCCCCGAAT-TTCCAAACATTAAACATTGCCTTGTCTTA
* *
91038571 GAAATTTATAAAACATGAGTGAAATAT-TAAAGGAACATTC-AATTATTTGGAACAAACCGGAAA
65 GAAATTTAGAAAACACGAGTGAAAT-TCTAAAGGAACATTCGAA-TATTTGGAACAAACCGGAAA
91038634 T
128 T
* * *
91038635 CGAAACCCCGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTAAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACATTAAACATTGCCTTGTCTTAG
* * * *
91038700 -AATTTGGAAAACACGAGTGAAATTCTAAAGGAATATTCGAATATTTTGAACAAACGGGAAAT
66 AAATTTAGAAAACACGAGTGAAATTCTAAAGGAACATTCGAATATTTGGAACAAACCGGAAAT
* *
91038762 CGAAACCCAGCACGGTAGGGCACGACTT-CCCGAATTTCCAAGCATCAAACATTGCCTTCGTCTT
1 CGAAACCCAGCACGGTAGGGCACGA-TTCCCCGAATTTCCAAACATTAAACATTGCCTT-GTCTT
91038826 AAGAAATTT
64 -AGAAATTT
91038835 TCAAACGAAT
Statistics
Matches: 174, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
126 20 0.11
127 133 0.76
128 14 0.08
129 2 0.01
130 5 0.03
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (128 bp):
CGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACATTAAACATTGCCTTGTCTTAG
AAATTTAGAAAACACGAGTGAAATTCTAAAGGAACATTCGAATATTTGGAACAAACCGGAAAT
Found at i:91040321 original size:3 final size:3
Alignment explanation
Indices: 91040282--91040307 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
91040272 TTATTGTAGA
91040282 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
91040308 CATACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Done.