Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 287 of 318
Found at i:91656687 original size:22 final size:22
Alignment explanation
Indices: 91656616--91656696 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
91656606 ATATTAACAA
*
91656616 AATAACAACATAAATAATGAAATAA
1 AATAACAA-A-AAATAATG-AATAC
* **
91656641 AATGACAATACTATAATGAATAC
1 AATAACAA-AAAATAATGAATAC
91656664 AATAACAAAAAATAAT-AATAAC
1 AATAACAAAAAATAATGAAT-AC
*
91656686 AATAAGAAAAA
1 AATAACAAAAA
91656697 TATTTAATTA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 3 0.07
22 18 0.39
23 11 0.24
24 6 0.13
25 8 0.17
ACGTcount: A:0.67, C:0.09, G:0.05, T:0.20
Consensus pattern (22 bp):
AATAACAAAAAATAATGAATAC
Found at i:91656747 original size:17 final size:16
Alignment explanation
Indices: 91656720--91656768 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
91656710 GTACTATATG
91656720 ATAAT-AATGATAATA
1 ATAATGAATGATAATA
91656735 ATAATGAAATGAT-ATA
1 ATAATG-AATGATAATA
*
91656751 A-AATGTATGATAATA
1 ATAATGAATGATAATA
91656766 ATA
1 ATA
91656769 TAATTACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 5 0.17
15 13 0.45
16 5 0.17
17 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (16 bp):
ATAATGAATGATAATA
Found at i:91656963 original size:21 final size:21
Alignment explanation
Indices: 91656929--91656968 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91656919 AAAAGAAAGT
*
91656929 ACAGGGACTCAATT-AAACGA
1 ACAGGGACTAAATTGAAACGA
91656949 ACAGGAGACTAAATTGAAAC
1 ACAGG-GACTAAATTGAAAC
91656969 TACAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 8 0.47
22 4 0.24
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.15
Consensus pattern (21 bp):
ACAGGGACTAAATTGAAACGA
Found at i:91662740 original size:50 final size:50
Alignment explanation
Indices: 91662665--91662941 Score: 428
Period size: 50 Copynumber: 5.5 Consensus size: 50
91662655 CCATGGCAAC
*
91662665 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
91662715 AAGTGATAAGTAATAGCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
91662765 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
91662815 AAGTGATAAGTAATAGCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
91662865 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
91662915 CAAGTGAAAAGTGGTAGTTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
91662942 CTGATCAGTG
Statistics
Matches: 206, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
50 183 0.89
51 23 0.11
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:91662838 original size:100 final size:100
Alignment explanation
Indices: 91662665--91662941 Score: 473
Period size: 100 Copynumber: 2.8 Consensus size: 100
91662655 CCATGGCAAC
*
91662665 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGAAAGTGATAAGTAATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATA
91662730 GCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
66 GCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
*
91662765 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATA
91662830 GCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
66 GCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
* * * **
91662865 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAACAAGTGAAAAGTGGT
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA-AAGTGATAAGTAAT
*
91662930 AGTTTCGGCTAC
65 AGCTTCGGCTAC
91662942 CTGATCAGTG
Statistics
Matches: 167, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
100 145 0.87
101 22 0.13
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (100 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATA
GCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
Found at i:91663074 original size:49 final size:48
Alignment explanation
Indices: 91662962--91663131 Score: 194
Period size: 49 Copynumber: 3.7 Consensus size: 48
91662952 AAAAGTGATT
* * * * * *
91662962 TTCGTATAAGACCATATCTGGGATATAGCATCAGT-GA-GATATGTGA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGA
*
91663008 TTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGA
* *
91663056 TTACGTGTAAGACTATAGCTGGGCTATGGCATCGATATATGA-A--T-A
1 TT-CGTGTAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGA
91663101 -T-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCA
91663132 TTATCTGAAG
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
42 28 0.26
44 1 0.01
45 1 0.01
46 31 0.28
48 12 0.11
49 36 0.33
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (48 bp):
TTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGA
Found at i:91663106 original size:42 final size:43
Alignment explanation
Indices: 91663011--91663174 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
91663001 TATGTGATTC
* *
91663011 GTGTAAGACCATAGCTGGGCTATGGCATCAATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATC--GAT-T-ATATGAAGA-T
* *
91663058 ACGTGTAAGACTATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
91663102 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATCTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
91663144 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
91663175 GAAAATGAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 63 0.62
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.27
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:91663854 original size:23 final size:23
Alignment explanation
Indices: 91663824--91663874 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
91663814 ATGATATTTC
91663824 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
91663847 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
91663870 AAATA
1 AAATA
91663875 TGAAATAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (23 bp):
AAATACTTTGGTGAATAAAGCTT
Found at i:91665435 original size:2 final size:2
Alignment explanation
Indices: 91665428--91665459 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
91665418 AATGGGACCC
*
91665428 CT CT CT CT CT CT CT CT CT CT CC CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
91665460 GTCTGTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:91669193 original size:20 final size:19
Alignment explanation
Indices: 91669146--91669195 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
91669136 AAAATTGTAA
*
91669146 AATTTTATAAAATATATAG
1 AATTTTAGAAAATATATAG
* * *
91669165 AAATATAGAAATATATATAT
1 AATTTTAGAAA-ATATATAG
91669185 AATTTTAGAAA
1 AATTTTAGAAA
91669196 GTCGTAAGAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (19 bp):
AATTTTAGAAAATATATAG
Found at i:91669380 original size:10 final size:10
Alignment explanation
Indices: 91669367--91669427 Score: 56
Period size: 10 Copynumber: 6.4 Consensus size: 10
91669357 TTTTGATGCA
91669367 TTTTATAATT
1 TTTTATAATT
*
91669377 TTTTATGA-T
1 TTTTATAATT
**
91669386 TTTTATAAAA
1 TTTTATAATT
*
91669396 TTTTACAATT
1 TTTTATAATT
*
91669406 TTTTATAA-A
1 TTTTATAATT
91669415 TTTTA-AATT
1 TTTTATAATT
91669424 TTTT
1 TTTT
91669428 TCATATTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
8 2 0.05
9 17 0.43
10 21 0.52
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:91669399 original size:19 final size:19
Alignment explanation
Indices: 91669384--91669426 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
91669374 ATTTTTTATG
91669384 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
91669403 ATTTTT-TATAAATTTTA-A
1 ATTTTTATA-AAATTTTACA
91669421 ATTTTT
1 ATTTTT
91669427 TTCATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:91669428 original size:20 final size:20
Alignment explanation
Indices: 91669385--91669427 Score: 72
Period size: 18 Copynumber: 2.2 Consensus size: 20
91669375 TTTTTTATGA
91669385 TTTTTATAAAATTTTACAAT
1 TTTTTATAAAATTTTACAAT
91669405 TTTTTAT-AAATTTTA-AAT
1 TTTTTATAAAATTTTACAAT
91669423 TTTTT
1 TTTTT
91669428 TCATATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 8 0.35
19 8 0.35
20 7 0.30
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTATAAAATTTTACAAT
Found at i:91669696 original size:93 final size:89
Alignment explanation
Indices: 91669544--91669763 Score: 302
Period size: 93 Copynumber: 2.4 Consensus size: 89
91669534 GTATTTTGGC
* * *
91669544 AATTGAATGCAAAAAAAAAAA-GTTTAATTGTTTTTTTTT-GAAAAATTTTGAGAGTCTTTTTGA
1 AATTGAATGCAAAAAAAAAAAGGCTTAATTGTTTTTTTTTAAAAAAAATTTGAGAGTCTTTTTGA
* * *
91669607 TATATTTTGACAA-TTTAAGTACCT
66 TACATTTTGA-AAGTTCAAGTACCG
*
91669631 AATTGAATGCAAAAAAAAAATAGGGGCTTAATTGATTTTTTTTTAAAAAAAATTTGAGGGTCTTT
1 AATTGAATGCAAAAAAAAAA-A--GGCTTAATTG-TTTTTTTTTAAAAAAAATTTGAGAGTCTTT
91669696 TTGATACATTTTGAAAGTTCAAGTACCG
62 TTGATACATTTTGAAAGTTCAAGTACCG
*
91669724 AATTGAATGCAAAAAAAAAAAGACTTAATTGTTTTTTTTT
1 AATTGAATGCAAAAAAAAAAAGGCTTAATTGTTTTTTTTT
91669764 TAAAGTTTGA
Statistics
Matches: 118, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
87 20 0.17
88 1 0.01
89 9 0.08
90 9 0.08
91 8 0.07
92 12 0.10
93 59 0.50
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (89 bp):
AATTGAATGCAAAAAAAAAAAGGCTTAATTGTTTTTTTTTAAAAAAAATTTGAGAGTCTTTTTGA
TACATTTTGAAAGTTCAAGTACCG
Found at i:91671247 original size:98 final size:98
Alignment explanation
Indices: 91671071--91671267 Score: 286
Period size: 98 Copynumber: 2.0 Consensus size: 98
91671061 TAGGATTTCT
* * * * * * *
91671071 CTCTTGGAGACCTATGCGAATCAATGGTTAAAATATCTGAAATTTTCTCTTTTTTTTCTTGGTAT
1 CTCTCGGAGACCCATGCGAATCAATGGTCAAAATATCTGAAATCTTCTCTTTTTTCTCTCGATAT
*** *
91671136 GAACGTTTTCCTTTTAATATTTCTTGTATCACC
66 GAACGTACCCCTTTTAATATTTCTTGTAACACC
91671169 CTCTCGGAGACCCATGCGAATCAATGGTCAAAATATCTGAAATCTTCTCTTTTTTCTCTCGATAT
1 CTCTCGGAGACCCATGCGAATCAATGGTCAAAATATCTGAAATCTTCTCTTTTTTCTCTCGATAT
*
91671234 GAATGTACCCCTTTTAATATTTCTTGTAACACC
66 GAACGTACCCCTTTTAATATTTCTTGTAACACC
91671267 C
1 C
91671268 CAAAATATAT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (98 bp):
CTCTCGGAGACCCATGCGAATCAATGGTCAAAATATCTGAAATCTTCTCTTTTTTCTCTCGATAT
GAACGTACCCCTTTTAATATTTCTTGTAACACC
Found at i:91676555 original size:42 final size:42
Alignment explanation
Indices: 91676435--91676559 Score: 130
Period size: 44 Copynumber: 2.9 Consensus size: 42
91676425 TCCGATATGT
*
91676435 GATTTCGTGTAAGACCACGTCTGGGACATTGGCATCAATTTGA
1 GATTTCGTGTAAGACCATGTCTGGGACA-TGGCATCAATTTGA
* * * *
91676478 GATTTAAGTGTAAGACCATGTCAGGAACATCGGCATCGTATTT-A
1 GATTT-CGTGTAAGACCATGTCTGGGACAT-GGCATC-AATTTGA
91676522 -ATTTCGTGTAAGAGCC-TGTCTGGGACAGTGGCATCAAT
1 GATTTCGTGTAAGA-CCATGTCTGGGACA-TGGCATCAAT
91676560 ACTTGATTAC
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 23 0.34
43 13 0.19
44 26 0.38
45 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATGGCATCAATTTGA
Found at i:91685784 original size:5 final size:6
Alignment explanation
Indices: 91685767--91685792 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
91685757 TTAAACCCCC
91685767 TATTTT TATTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TA
91685793 GCATTTCGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:91686630 original size:11 final size:11
Alignment explanation
Indices: 91686616--91686643 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
91686606 AGAATACAAG
91686616 AAGTTGTGCGC
1 AAGTTGTGCGC
91686627 AAGTTGTGCGC
1 AAGTTGTGCGC
91686638 AAGTTG
1 AAGTTG
91686644 CCCACAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (11 bp):
AAGTTGTGCGC
Found at i:91689594 original size:8 final size:8
Alignment explanation
Indices: 91689581--91689620 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
91689571 ACTACGTTTG
91689581 AAAAAAAT
1 AAAAAAAT
91689589 AAAAAAAT
1 AAAAAAAT
*
91689597 AAAACAAAA
1 AAAA-AAAT
91689606 AATAAAAAT
1 AA-AAAAAT
91689615 AAAAAA
1 AAAAAA
91689621 TGTATATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 16 0.57
9 10 0.36
10 2 0.07
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:91689621 original size:13 final size:13
Alignment explanation
Indices: 91689583--91689621 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
91689573 TACGTTTGAA
91689583 AAAAATAAAAAA-
1 AAAAATAAAAAAT
*
91689595 ATAAAACAAAAAAT
1 A-AAAATAAAAAAT
91689609 AAAAATAAAAAAT
1 AAAAATAAAAAAT
91689622 GTATATAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:91690223 original size:13 final size:13
Alignment explanation
Indices: 91690205--91690259 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
91690195 TATTTAGAAT
91690205 TATTTAGTGATAA
1 TATTTAGTGATAA
*
91690218 TATTTAGTAATAA
1 TATTTAGTGATAA
*
91690231 TATTTA--GA-AT
1 TATTTAGTGATAA
91690241 TATTTAGTGATAA
1 TATTTAGTGATAA
91690254 TATTTA
1 TATTTA
91690260 AGAAAAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 7 0.20
11 1 0.03
12 2 0.06
13 25 0.71
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:91690269 original size:24 final size:23
Alignment explanation
Indices: 91690219--91690271 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
91690209 TAGTGATAAT
**
91690219 ATTTAGTAATAATATTTAGAATT
1 ATTTAGTAATAATATTTAGAAAA
*
91690242 ATTTAGTGATAATATTTAAGAAAA
1 ATTTAGTAATAATATTT-AGAAAA
91690266 ATTTAG
1 ATTTAG
91690272 CTAAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (23 bp):
ATTTAGTAATAATATTTAGAAAA
Found at i:91695302 original size:36 final size:36
Alignment explanation
Indices: 91695261--91695331 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
91695251 GAACAGGTAA
91695261 TAGTAGTTCATTCTTTATTTAAAAAAGAAAAAAAAG
1 TAGTAGTTCATTCTTTATTTAAAAAAGAAAAAAAAG
91695297 TAGTAGTTCATTCTTTATTTAAAAAAGAAAAAAAA
1 TAGTAGTTCATTCTTTATTTAAAAAAGAAAAAAAA
91695332 AAGCTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.34
Consensus pattern (36 bp):
TAGTAGTTCATTCTTTATTTAAAAAAGAAAAAAAAG
Found at i:91698771 original size:53 final size:53
Alignment explanation
Indices: 91698707--91698812 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
91698697 CATCAGATTT
*
91698707 TCCTAATAAATACTAATCTTTCGTACGAAATCAGTTAAAAATGTTTGATAATC
1 TCCTAATAAATACTAATCTTTCGTACGAAATCAGATAAAAATGTTTGATAATC
*
91698760 TCCTAATAAATACTAATCTTTCGTACGAAATCAGATAACAATGTTTGATAATC
1 TCCTAATAAATACTAATCTTTCGTACGAAATCAGATAAAAATGTTTGATAATC
91698813 CTATCTTTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (53 bp):
TCCTAATAAATACTAATCTTTCGTACGAAATCAGATAAAAATGTTTGATAATC
Found at i:91703703 original size:15 final size:14
Alignment explanation
Indices: 91703665--91703706 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
91703655 ATAATTAATT
*
91703665 TTTAATTAAATAAA
1 TTTAATTAATTAAA
91703679 TTTAATTAATTAAA
1 TTTAATTAATTAAA
*
91703693 TGTTGATTAATTAA
1 T-TTAATTAATTAA
91703707 GTCAATATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (14 bp):
TTTAATTAATTAAA
Found at i:91704339 original size:34 final size:34
Alignment explanation
Indices: 91704300--91704415 Score: 119
Period size: 34 Copynumber: 3.4 Consensus size: 34
91704290 ACATATATGG
*
91704300 ATATCATATCAGAATGACACAATACCACAAATAT
1 ATATCAAATCAGAATGACACAATACCACAAATAT
* * * * **
91704334 ATATCAAATCAGAAT-ATCATATTTCCA-GAACGT
1 ATATCAAATCAGAATGA-CACAATACCACAAATAT
* *
91704367 ATATCATATCAGAATGACACAATGCCACAAATAT
1 ATATCAAATCAGAATGACACAATACCACAAATAT
*
91704401 ATATCAAATTAGAAT
1 ATATCAAATCAGAAT
91704416 ATCATATTTC
Statistics
Matches: 63, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
33 25 0.40
34 38 0.60
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (34 bp):
ATATCAAATCAGAATGACACAATACCACAAATAT
Found at i:91704378 original size:33 final size:33
Alignment explanation
Indices: 91704333--91704444 Score: 118
Period size: 33 Copynumber: 3.4 Consensus size: 33
91704323 ACCACAAATA
91704333 TATATCAAATCAGAATATCATATTTCCAGAACG
1 TATATCAAATCAGAATATCATATTTCCAGAACG
* * * * * **
91704366 TATATCATATCAGAATGA-CACAATGCCACAAATA
1 TATATCAAATCAGAAT-ATCATATTTCCA-GAACG
*
91704400 TATATCAAATTAGAATATCATATTTCCAGAACG
1 TATATCAAATCAGAATATCATATTTCCAGAACG
*
91704433 TATATCATATCA
1 TATATCAAATCA
91704445 AAACAAATCC
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
33 35 0.59
34 24 0.41
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (33 bp):
TATATCAAATCAGAATATCATATTTCCAGAACG
Found at i:91704408 original size:67 final size:67
Alignment explanation
Indices: 91704300--91704444 Score: 272
Period size: 67 Copynumber: 2.2 Consensus size: 67
91704290 ACATATATGG
91704300 ATATCATATCAGAATGACACAATACCACAAATATATATCAAATCAGAATATCATATTTCCAGAAC
1 ATATCATATCAGAATGACACAATACCACAAATATATATCAAATCAGAATATCATATTTCCAGAAC
91704365 GT
66 GT
* *
91704367 ATATCATATCAGAATGACACAATGCCACAAATATATATCAAATTAGAATATCATATTTCCAGAAC
1 ATATCATATCAGAATGACACAATACCACAAATATATATCAAATCAGAATATCATATTTCCAGAAC
91704432 GT
66 GT
91704434 ATATCATATCA
1 ATATCATATCA
91704445 AAACAAATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 76 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.28
Consensus pattern (67 bp):
ATATCATATCAGAATGACACAATACCACAAATATATATCAAATCAGAATATCATATTTCCAGAAC
GT
Found at i:91709343 original size:21 final size:20
Alignment explanation
Indices: 91709317--91709358 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
91709307 TTTATATTAT
91709317 TAAAATGGTAATAAAATAAAA
1 TAAAATGGTAATAAAA-AAAA
**
91709338 TAAAATTTTAATAAAAAAAA
1 TAAAATGGTAATAAAAAAAA
91709358 T
1 T
91709359 TATAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
TAAAATGGTAATAAAAAAAA
Found at i:91709359 original size:15 final size:15
Alignment explanation
Indices: 91709331--91709368 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
91709321 ATGGTAATAA
*
91709331 AATAAAATAAAATTTT
1 AATAAAA-AAAATTAT
91709347 AATAAAAAAAATTAT
1 AATAAAAAAAATTAT
91709362 AA-AAAAA
1 AATAAAAA
91709369 TTTAGTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.24
15 9 0.43
16 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAAAAAAAATTAT
Found at i:91714595 original size:12 final size:12
Alignment explanation
Indices: 91714578--91714603 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91714568 AAAATAGGGC
91714578 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91714590 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91714602 TT
1 TT
91714604 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:91714734 original size:41 final size:41
Alignment explanation
Indices: 91714684--91714890 Score: 265
Period size: 41 Copynumber: 5.1 Consensus size: 41
91714674 AGAGCAATAG
91714684 AAAA-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* * * *** *
91714724 AAAGCTAGAGCATTAGCAGCG-TTTTACCAAAAACACCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGCTA
* * *
91714765 AAAACCATAGCATTAGCGGTGCTTTTGGTAAAACGCAGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
*
91714806 AAAACCAGAGCATTAGCGGCGCTTTTAGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
* * *
91714847 AAAACCAGAGCAGTAGCGGCGCTTTCGATAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
91714888 AAA
1 AAA
91714891 GTCATATAAT
Statistics
Matches: 139, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
40 7 0.05
41 128 0.92
42 4 0.03
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
Found at i:91715426 original size:14 final size:14
Alignment explanation
Indices: 91715382--91715439 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
91715372 TAAAGGTGGT
91715382 TTAAGGGTT-GGGG
1 TTAAGGGTTAGGGG
** *
91715395 TTTAAGATTTAGGTG
1 -TTAAGGGTTAGGGG
*
91715410 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
91715424 TTAAGGGTGAGGGG
1 TTAAGGGTTAGGGG
91715438 TT
1 TT
91715440 CATGGTTCAG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 31 0.91
15 3 0.09
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:91715616 original size:14 final size:14
Alignment explanation
Indices: 91715597--91715623 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91715587 TATCATTATA
91715597 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
91715611 GTTTAGGGTTTAA
1 GTTTAGGGTTTAA
91715624 AGTGTATGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:91715664 original size:15 final size:15
Alignment explanation
Indices: 91715646--91715688 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
91715636 ATTATTTTAA
91715646 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
91715661 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
91715675 GATTTATGG-TTATG
1 GGTTTATGGATTATG
91715689 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:91715666 original size:22 final size:22
Alignment explanation
Indices: 91715641--91715683 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91715631 GAGTTATTAT
*
91715641 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
91715663 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
91715684 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:91716262 original size:8 final size:8
Alignment explanation
Indices: 91716246--91716318 Score: 51
Period size: 8 Copynumber: 8.8 Consensus size: 8
91716236 TTTATATGAT
*
91716246 AATTTAAA
1 AATTAAAA
91716254 AATTAAAAA
1 AATT-AAAA
91716263 AATCTTCAAAA
1 AA--TT-AAAA
**
91716274 AATTTTAA
1 AATTAAAA
91716282 AATTAAAA
1 AATTAAAA
91716290 AA-TAAAA
1 AATTAAAA
91716297 AA-TAAAA
1 AATTAAAA
91716304 AACTTAAAA
1 AA-TTAAAA
*
91716313 ATTTAA
1 AATTAA
91716319 TATTTAATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
7 14 0.26
8 18 0.34
9 13 0.25
11 8 0.15
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (8 bp):
AATTAAAA
Found at i:91718191 original size:138 final size:138
Alignment explanation
Indices: 91717943--91718214 Score: 474
Period size: 138 Copynumber: 2.0 Consensus size: 138
91717933 TAATAATGTA
* * *
91717943 TGGATGCTTTGTGGAGTCCCTGTTTTGAATTTTAGAATCATATGTAATCTCTTTAAAAATTGGCA
1 TGGATGCTTTGTGGAGTACCTGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCA
91718008 TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGAT
66 TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGAT
91718073 TTAACGTT
131 TTAACGTT
* *
91718081 TGGATGCTTT-TAGGAGTACTTGTTTTGAATTTTAGAACCATATGTAATTTCCTTAAAAATTGGC
1 TGGATGCTTTGT-GGAGTACCTGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGC
*
91718145 ATTAAATTGTTTTTAGGTTTTATATTAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGA
65 ATTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGA
91718210 TTTAA
130 TTTAA
91718215 AATTTTAAAA
Statistics
Matches: 127, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
137 1 0.01
138 126 0.99
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.49
Consensus pattern (138 bp):
TGGATGCTTTGTGGAGTACCTGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCA
TTAAATTGTTTTTAGGTTTTATAATAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGAT
TTAACGTT
Found at i:91719327 original size:43 final size:43
Alignment explanation
Indices: 91719258--91719340 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
91719248 AAATTTCATT
* *
91719258 ACCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCTTG
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
91719301 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
1 ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
91719341 GTTTTTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (43 bp):
ACCTCTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG
Found at i:91721266 original size:23 final size:23
Alignment explanation
Indices: 91721238--91721284 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
91721228 ACATCTGAAA
*
91721238 ATTATATATATATTGT-TTATTTT
1 ATTATACATAT-TTGTATTATTTT
91721261 ATTATACATATTTGTAATTATTTT
1 ATTATACATATTTGT-ATTATTTT
91721285 CTAATAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 10 0.48
24 7 0.33
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (23 bp):
ATTATACATATTTGTATTATTTT
Found at i:91721485 original size:17 final size:17
Alignment explanation
Indices: 91721463--91721519 Score: 105
Period size: 17 Copynumber: 3.3 Consensus size: 17
91721453 AAGCCCCCTC
91721463 AAAAAACCTAACCCAAA
1 AAAAAACCTAACCCAAA
91721480 AAAAAACCTAACCCAAA
1 AAAAAACCTAACCCAAA
91721497 AAAAAACCTAACCCTAAA
1 AAAAAACCTAACCC-AAA
91721515 AAAAA
1 AAAAA
91721520 GAGAAAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
17 31 0.79
18 8 0.21
ACGTcount: A:0.67, C:0.26, G:0.00, T:0.07
Consensus pattern (17 bp):
AAAAAACCTAACCCAAA
Found at i:91721580 original size:8 final size:8
Alignment explanation
Indices: 91721569--91721593 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91721559 ACTAAGAAAC
91721569 CCTAGCCA
1 CCTAGCCA
91721577 CCTAGCCA
1 CCTAGCCA
91721585 CCTAGCCA
1 CCTAGCCA
91721593 C
1 C
91721594 TTTCCCACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.52, G:0.12, T:0.12
Consensus pattern (8 bp):
CCTAGCCA
Found at i:91721878 original size:21 final size:21
Alignment explanation
Indices: 91721851--91721904 Score: 99
Period size: 21 Copynumber: 2.5 Consensus size: 21
91721841 TTTCGAATCT
91721851 TTTTTTTCCTTTTTTTGTGTTG
1 TTTTTTT-CTTTTTTTGTGTTG
91721873 TTTTTTTCTTTTTTTGTGTTG
1 TTTTTTTCTTTTTTTGTGTTG
91721894 TTTTTTTCTTT
1 TTTTTTTCTTT
91721905 CTTTATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 25 0.78
22 7 0.22
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.81
Consensus pattern (21 bp):
TTTTTTTCTTTTTTTGTGTTG
Found at i:91723586 original size:12 final size:12
Alignment explanation
Indices: 91723569--91723604 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
91723559 ATTCATTTGA
91723569 CATTCATGCATT
1 CATTCATGCATT
91723581 CATTCATGCATT
1 CATTCATGCATT
*
91723593 CATTCATACATT
1 CATTCATGCATT
91723605 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:91732144 original size:72 final size:70
Alignment explanation
Indices: 91732046--91732210 Score: 224
Period size: 71 Copynumber: 2.3 Consensus size: 70
91732036 GAGTTAAGCC
** * *
91732046 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACAC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTT-AGCCTCAGGGCACAC
91732110 TGAGGTA
64 TGAGGTA
* *
91732117 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTAGCCTCAGGTCACGCT
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTAGCCTCAGGGCACACT
91732182 GAGGTA
65 GAGGTA
* *
91732188 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
91732211 ACGTTGTTCA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
70 8 0.10
71 36 0.43
72 36 0.43
73 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (70 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTAGCCTCAGGGCACACTG
AGGTA
Found at i:91732484 original size:13 final size:13
Alignment explanation
Indices: 91732466--91732499 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
91732456 CGTTGAGGTA
*
91732466 TTTTCAATTTCTG
1 TTTTCAATTTATG
91732479 TTTTCAATTTATG
1 TTTTCAATTTATG
91732492 TTGTTCAA
1 TT-TTCAA
91732500 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:91732528 original size:140 final size:140
Alignment explanation
Indices: 91732144--91732753 Score: 1006
Period size: 140 Copynumber: 4.5 Consensus size: 140
91732134 TTAATTTCAA
91732144 CTCATATTGCGAGAGGTGAGTT-AGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
91732208 TTTACGTTGTTCAAGAATCAACT-ATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91732272 TCAAAATCAG
131 TCAAAATCAG
*
91732282 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCT-AGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
91732346 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGGACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91732411 TCAAAATCAG
131 TCAAAATCAG
*
91732421 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGTTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
91732486 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91732551 TCAAAATCAG
131 TCAAAATCAG
91732561 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAA-------TTT--A
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
91732617 --T--GTTGTTCAAGAATC-ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
91732677 TCAAAAT-AG
131 TCAAAATCAG
91732686 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
91732750 TCAA
62 TCAA
91732754 AAAAAAATTC
Statistics
Matches: 447, Mismatches: 9, Indels: 33
0.91 0.02 0.07
Matches are distributed among these distances:
124 2 0.00
125 35 0.08
126 52 0.12
127 30 0.07
129 1 0.00
131 1 0.00
133 3 0.01
135 3 0.01
137 1 0.00
138 70 0.16
139 101 0.23
140 148 0.33
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:91732663 original size:126 final size:127
Alignment explanation
Indices: 91732479--91732742 Score: 480
Period size: 126 Copynumber: 2.1 Consensus size: 127
91732469 TCAATTTCTG
91732479 TTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
1 TTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
91732544 TACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-GCTGAGGTA
66 TACTTTTTCAAAAT-AGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAGCTGAGGTA
91732606 TTTTCAATTTATGTTGTTCAAGAATC-ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
1 TTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
91732670 TACTTTTTCAAAATAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA
66 TACTTTTTCAAAATAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACA-GCTGAGGTA
91732733 TTTTCAATTT
1 TTTTCAATTT
91732743 CTGTCTTTCA
Statistics
Matches: 134, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
124 2 0.01
125 35 0.26
126 52 0.39
127 45 0.34
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (127 bp):
TTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTC
TACTTTTTCAAAATAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACAGCTGAGGTA
Found at i:91732870 original size:72 final size:72
Alignment explanation
Indices: 91732674--91732896 Score: 274
Period size: 72 Copynumber: 3.0 Consensus size: 72
91732664 AATTTCTACT
* ** * * * *
91732674 TTTTCAAAA-T-AGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
91732736 TCAATTTCTG
63 TCAATTTCTG
91732746 TCTTTCAAAAAAAAATTCAACTCATATTG-GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
1 T-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
91732810 ATTTCAATTTCTG
60 ATTTCAATTTCTG
91732823 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
91732888 ATTTCTG
66 ATTTCTG
91732895 TT
1 TT
91732897 CAAAATGAGT
Statistics
Matches: 134, Mismatches: 7, Indels: 20
0.83 0.04 0.12
Matches are distributed among these distances:
71 18 0.13
72 51 0.38
73 4 0.03
76 4 0.03
77 24 0.18
78 4 0.03
79 18 0.13
80 11 0.08
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:91732942 original size:48 final size:49
Alignment explanation
Indices: 91732850--91732944 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 49
91732840 ATATTGCGAG
*
91732850 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
91732899 AAATGAGTTGAGCCTCAAGA-ACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
91732945 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 25 0.56
49 20 0.44
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:91732999 original size:120 final size:121
Alignment explanation
Indices: 91732778--91733016 Score: 426
Period size: 120 Copynumber: 2.0 Consensus size: 121
91732768 CATATTGGAG
*
91732778 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
91732843 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
91732899 AAATGAGTTGAGCCTCAAGA-ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
91732963 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
91733017 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 93 0.82
121 20 0.18
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:91733056 original size:77 final size:75
Alignment explanation
Indices: 91732899--91733249 Score: 439
Period size: 77 Copynumber: 4.7 Consensus size: 75
91732889 TTTCTGTTCA
* *
91732899 AAATGAGTTGAGCCTCAAGA-ACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
91732960 ATATTGCGAG
66 ATATTGCGAG
* *
91732970 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC--AAAAAAATCAAC
*
91733035 TCATATTGTGAG
64 TCATATTGCGAG
*
91733047 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
91733112 ATATTGCGAG
66 ATATTGCGAG
** * * *
91733122 AGGTGAGTTGAG-CTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACT-
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
91733184 AGTATTGTGAG
66 A-TATTGCGAG
*** * *
91733195 AGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT-TCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCT-GTTTTTCAA
91733250 TTTCTGCCTT
Statistics
Matches: 250, Mismatches: 18, Indels: 18
0.87 0.06 0.06
Matches are distributed among these distances:
71 19 0.08
72 23 0.09
73 41 0.16
74 35 0.14
75 34 0.14
76 22 0.09
77 76 0.30
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:91733059 original size:197 final size:193
Alignment explanation
Indices: 91732724--91733093 Score: 546
Period size: 197 Copynumber: 1.9 Consensus size: 193
91732714 CGGTTCACAT
*
91732724 GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATTCAACTCATATTGGAGAAATGAGTTGA
1 GCTGAGGTAATTTCAATTTCTGTCTTTC----AAAAATTCAACTCATATTGGAGAAATGAGTTGA
* *
91732789 GCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAAT
62 GCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAAT
*
91732854 GAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGA
127 GAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGA
91732919 AC
192 AC
*
91732921 GCTGAGGTAATTTCAATTTCTGT-TTTC-AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCC
1 GCTGAGGTAATTTCAATTTCTGTCTTTCAAAAATTCAACTCATATTG-GAGAAATGAGTTGAGCC
* * *
91732984 TCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGTGAGAA
65 TCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC----AAAAATCAACTCATATTGCGAGAA
* *
91733049 ATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
125 ATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
91733094 TTTCAAAAAA
Statistics
Matches: 157, Mismatches: 10, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
191 18 0.11
192 44 0.28
193 5 0.03
196 4 0.03
197 86 0.55
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (193 bp):
GCTGAGGTAATTTCAATTTCTGTCTTTCAAAAATTCAACTCATATTGGAGAAATGAGTTGAGCCT
CAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGT
TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGAAC
Found at i:91733450 original size:79 final size:75
Alignment explanation
Indices: 91733264--91733624 Score: 240
Period size: 79 Copynumber: 4.5 Consensus size: 75
91733254 TGCCTTTCAA
* * * *
91733264 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTTTCAA
* *
91733329 TTTCTGTCTTT
65 TTTATATCTTT
*
91733340 AAAAAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATCACACACTGAGCTA--TTTTC
*
91733404 AATTTATATTTTT
63 AATTTATATCTTT
* * * * ** *
91733417 CAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTAGGGTCACA-TGTCGAGGTATTTTC
1 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTA-GATCACACACT-GAGCTATTTTC
* *
91733481 AAAATCTGTTTTTCAGATTTGTTT
63 --AA------TTT---ATATCTTT
** * * * ***
91733505 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGTCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTTTCAA
* * *
91733570 TTTCTGTTTTTTTT
65 -TT-T-ATATCTTT
91733584 CAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTT
1 -AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCTT
91733625 TTTAATTTCT
Statistics
Matches: 230, Mismatches: 32, Indels: 42
0.76 0.11 0.14
Matches are distributed among these distances:
74 3 0.01
75 40 0.17
76 8 0.03
77 20 0.09
78 10 0.04
79 48 0.21
80 11 0.05
81 29 0.13
85 5 0.02
87 47 0.20
88 9 0.04
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCACACACTGAGCTATTTTCAAT
TTATATCTTT
Found at i:91733513 original size:241 final size:241
Alignment explanation
Indices: 91733024--91733831 Score: 873
Period size: 241 Copynumber: 3.3 Consensus size: 241
91733014 GTTTTTCAAA
* ** ** * *
91733024 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* *
91733086 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-TCAG--GACACGCTG
65 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
* * * * *
91733148 AGGTA-ATTTCAATTTCTGTTGTCAAAAAAATCAACT-AGTATTGTGAGAGGCGAGTTGAGCCTC
130 AGGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCA-TATTGCGAGAGGTGAGTTGAGCCT-
* * * * * *
91733211 AGGTCACACGCCGAGGTATTTTC-AATTTTCGTTTTTCAATTTCTGCCTTTC
193 AGGTCACATGTCGAGGTATTTTCAAAATCT-GTTTTTCAAGTTATG--TTTC
*
91733262 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 ---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
*
91733327 AATTTCTGTCTTT-AAAAAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
63 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
* * *
91733390 TGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGC
128 TGAGGTA-TTTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
91733455 CTAGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATT-TGTTTTC
191 CTA-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTATG-TTTC
* *
91733507 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGTCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
*
91733571 TTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCT
66 TTCTG---TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-
** * * *
91733635 GTGA-AGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAAAGG
122 -ACACA-CTGAGGT-A-T-TTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGAGG
* * * *
91733696 TGAGTTGAACCTTA-GTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
181 TGAGTTGAGCC-TAGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTATGTTTC
91733757 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
91733822 TTCTGTTTTT
66 TTCTGTTTTT
91733832 AATGTCTGTT
Statistics
Matches: 489, Mismatches: 46, Indels: 57
0.83 0.08 0.10
Matches are distributed among these distances:
241 128 0.26
242 13 0.03
243 27 0.06
244 17 0.03
245 11 0.02
246 15 0.03
247 94 0.19
248 11 0.02
249 3 0.01
250 41 0.08
251 103 0.21
252 8 0.02
253 14 0.03
254 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (241 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
GGTATTTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG
TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTATGTTTC
Found at i:91733566 original size:87 final size:86
Alignment explanation
Indices: 91733420--91733880 Score: 294
Period size: 87 Copynumber: 5.4 Consensus size: 86
91733410 TATTTTTCAA
* * * * *
91733420 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTAGGGTCACATG-TCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCT-GAGCTATTTTCAAA
*
91733484 ATCTGTTTTTCAGATT-TGTTTTC
65 TTCTGTTTTT-A-ATTCTGTTTTC
* * *
91733507 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGTCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAAAT
***
91733572 TCTG--TTT--TT-T-TTCAA
66 TCTGTTTTTAATTCTGTTTTC
* * * * * ** *
91733587 AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG-CTT--TTTA-ATTTCTGTG--AAGTT-GA
1 AAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACA-TGCTGAGCTATTTTCAA
* **
91733645 GTTGAGTCTTTTAATTTCTGTTTTTC
64 ATTCTGT-TTTTAA-TTCTG-TTTTC
* * * *
91733671 AAAAATCAACTCATATTGCGA-AAGGTGAGTTGAACCTTAG-TCACAT-ATCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTTGGCTCACATGCT-GAGCTATTTTCAA
* * **
91733733 AATCTGCTTTTCAAGTTAAG-TTTC
64 ATTCTG-TTTTTAA-TTCTGTTTTC
* * *
91733757 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAAA
*
91733822 TTCTGTTTTTAATGTCTGTTTTT
65 TTCTGTTTTTAAT-TCTGTTTTC
* * * * *
91733845 AGAGAGTCAATTCATATTGCGAAAAATGAGTTGAGC
1 A-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
91733881 TCAGGATCAC
Statistics
Matches: 284, Mismatches: 61, Indels: 57
0.71 0.15 0.14
Matches are distributed among these distances:
75 4 0.01
76 3 0.01
78 10 0.04
80 10 0.04
81 33 0.12
82 2 0.01
83 25 0.09
84 11 0.04
85 8 0.03
86 6 0.02
87 105 0.37
88 65 0.23
89 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAAAT
TCTGTTTTTAATTCTGTTTTC
Found at i:91734516 original size:25 final size:26
Alignment explanation
Indices: 91734485--91734542 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
91734475 TAAGCCCCCC
91734485 AAAAAAACCTAA-CCAAAAAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAAAAA
*
91734510 AAAAAAACCTAACCCTAAAAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAAAAA
*
91734536 AGAAAAA
1 AAAAAAA
91734543 GAAAAACCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 12 0.40
26 18 0.60
ACGTcount: A:0.78, C:0.16, G:0.02, T:0.05
Consensus pattern (26 bp):
AAAAAAACCTAACCCAAAAAAAAAAA
Found at i:91734565 original size:32 final size:30
Alignment explanation
Indices: 91734496--91734567 Score: 90
Period size: 32 Copynumber: 2.3 Consensus size: 30
91734486 AAAAAACCTA
*
91734496 ACCAAAAAAAAAAAAAAAAAACCTAACCCT
1 ACCAAAAAAAAAAAAAAAAAACCTAACCCC
**
91734526 AAAAAAAAAAAGAAAAAGAAAAACCTAACCCC
1 ACCAAAAAAAA-AAAAA-AAAAACCTAACCCC
*
91734558 CCCAAAAAAA
1 ACCAAAAAAA
91734568 CTAAGAAACC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 9 0.26
31 5 0.15
32 20 0.59
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.04
Consensus pattern (30 bp):
ACCAAAAAAAAAAAAAAAAAACCTAACCCC
Found at i:91737151 original size:15 final size:15
Alignment explanation
Indices: 91737131--91737180 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
91737121 AAAATATAAA
91737131 AAAAATTAAAATTAT
1 AAAAATTAAAATTAT
91737146 AAAAATTATAAATTAT
1 AAAAATTA-AAATTAT
*
91737162 -AAATTATAAAATTAT
1 AAAAAT-TAAAATTAT
91737177 AAAA
1 AAAA
91737181 TTATAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 19 0.61
16 12 0.39
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAAATTAAAATTAT
Found at i:91737168 original size:23 final size:23
Alignment explanation
Indices: 91737043--91737187 Score: 101
Period size: 23 Copynumber: 6.2 Consensus size: 23
91737033 TTCCACATTA
91737043 ATAAATTATAAAA-TATAAAAATT
1 ATAAATTATAAAATTAT-AAAATT
**
91737066 ATTAAATTATATAAA-TATATTATT
1 A-TAAATTATA-AAATTATAAAATT
91737090 A-AAAGTTATGAAAATTTTATAAAAATT
1 ATAAA-TTAT-AAAA--TTAT-AAAATT
*
91737117 ATTAAA-AATATAAA--A-AAAATT
1 A-TAAATTATA-AAATTATAAAATT
91737138 A-AAATTATAAAAATTAT-AAATT
1 ATAAATTAT-AAAATTATAAAATT
91737160 ATAAATTATAAAATTATAAAATT
1 ATAAATTATAAAATTATAAAATT
91737183 ATAAA
1 ATAAA
91737188 AAAATTATAA
Statistics
Matches: 98, Mismatches: 6, Indels: 36
0.70 0.04 0.26
Matches are distributed among these distances:
19 3 0.03
20 5 0.05
21 8 0.08
22 18 0.18
23 26 0.27
24 15 0.15
25 6 0.06
26 4 0.04
27 10 0.10
29 3 0.03
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (23 bp):
ATAAATTATAAAATTATAAAATT
Found at i:91737191 original size:77 final size:78
Alignment explanation
Indices: 91737060--91737203 Score: 188
Period size: 77 Copynumber: 1.9 Consensus size: 78
91737050 ATAAAATATA
* * * * *
91737060 AAAATTATTAAATTATATAAATATATTATTAAAAGTTATGAAAATTTTATAAAAATTATTAAAAA
1 AAAATTATAAAATTATATAAATAAATTATTAAAAGTTATGAAAATTATAAAAAAATTATAAAAAA
91737125 TATAAAAAAAATT
66 TATAAAAAAAATT
91737138 AAAATTATAAAAATTATA-AATTATAAATTA-TAAAA-TTAT-AAAATTATAAAAAAATTATAAA
1 AAAATTAT-AAAATTATATAA--ATAAATTATTAAAAGTTATGAAAATTATAAAAAAATTATAAA
91737199 AAATA
63 AAATA
91737204 GGTAAAAGTT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
77 24 0.41
78 14 0.24
79 13 0.22
80 7 0.12
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (78 bp):
AAAATTATAAAATTATATAAATAAATTATTAAAAGTTATGAAAATTATAAAAAAATTATAAAAAA
TATAAAAAAAATT
Found at i:91737193 original size:11 final size:11
Alignment explanation
Indices: 91737177--91737201 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91737167 ATAAAATTAT
91737177 AAAATTATAAA
1 AAAATTATAAA
91737188 AAAATTATAAA
1 AAAATTATAAA
91737199 AAA
1 AAA
91737202 TAGGTAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:91737199 original size:8 final size:8
Alignment explanation
Indices: 91737045--91737188 Score: 100
Period size: 8 Copynumber: 17.4 Consensus size: 8
91737035 CCACATTAAT
91737045 AAATTATA
1 AAATTATA
91737053 AAA-TATAA
1 AAATTAT-A
*
91737061 AAATTATT
1 AAATTATA
91737069 AAATTATA
1 AAATTATA
91737077 TAAA-TATA
1 -AAATTATA
**
91737085 TTATTA-A
1 AAATTATA
*
91737092 AAGTTATGA
1 AAATTAT-A
91737101 AAATTTTATAA
1 AAA--TTAT-A
91737112 AAATTATTA
1 AAATTA-TA
*
91737121 AAAATATAA
1 AAATTAT-A
**
91737130 AAAAAATTA
1 AAATTA-TA
91737139 AAATTATAA
1 AAATTAT-A
91737148 AAATTAT-
1 AAATTATA
91737155 AAATTAT-
1 AAATTATA
91737162 AAATTATA
1 AAATTATA
91737170 AAATTATA
1 AAATTATA
91737178 AAATTATA
1 AAATTATA
91737186 AAA
1 AAA
91737189 AAATTATAAA
Statistics
Matches: 110, Mismatches: 13, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
7 22 0.20
8 41 0.37
9 37 0.34
10 2 0.02
11 8 0.07
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (8 bp):
AAATTATA
Found at i:91737199 original size:9 final size:9
Alignment explanation
Indices: 91737045--91737200 Score: 105
Period size: 9 Copynumber: 17.3 Consensus size: 9
91737035 CCACATTAAT
91737045 AAATTAT-A
1 AAATTATAA
91737053 AAA-TATAA
1 AAATTATAA
*
91737061 AAATTATTA
1 AAATTATAA
*
91737070 AATTATATAA
1 AAAT-TATAA
91737080 ATATATTATTAA
1 A-A-ATTA-TAA
*
91737092 AAGTTATGAA
1 AAATTAT-AA
*
91737102 AATTTTATAA
1 AA-ATTATAA
91737112 AAATTATTAA
1 AAATTA-TAA
91737122 AAA-TATAA
1 AAATTATAA
** *
91737130 AAAAAATTA
1 AAATTATAA
91737139 AAATTATAA
1 AAATTATAA
91737148 AAATTAT--
1 AAATTATAA
91737155 AAATTAT--
1 AAATTATAA
91737162 AAATTAT-A
1 AAATTATAA
91737170 AAATTAT-A
1 AAATTATAA
91737178 AAATTATAAAA
1 AAATTAT--AA
91737189 AAATTATAA
1 AAATTATAA
91737198 AAA
1 AAA
91737201 ATAGGTAAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 27
0.76 0.07 0.17
Matches are distributed among these distances:
7 17 0.14
8 28 0.23
9 34 0.28
10 22 0.18
11 16 0.13
12 5 0.04
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (9 bp):
AAATTATAA
Found at i:91746578 original size:31 final size:29
Alignment explanation
Indices: 91746518--91746578 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
91746508 TTCATTTGTA
*
91746518 TATTTTTATATTTTATTATATAACATATT
1 TATTTTTAAATTTTATTATATAACATATT
* *
91746547 TATTTTTAAATTTTCTTTTATAA-ATA-T
1 TATTTTTAAATTTTATTATATAACATATT
91746574 TATTT
1 TATTT
91746579 GTTTTAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 3 0.10
29 20 0.69
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (29 bp):
TATTTTTAAATTTTATTATATAACATATT
Found at i:91752279 original size:11 final size:10
Alignment explanation
Indices: 91752261--91752321 Score: 51
Period size: 8 Copynumber: 6.3 Consensus size: 10
91752251 TAATAAATAA
91752261 AAATAAAATC
1 AAATAAAATC
91752271 AAATCAAAAATC
1 AAAT--AAAATC
*
91752283 AAAAAAAAATC
1 -AAATAAAATC
91752294 AAA-AAAATC
1 AAATAAAATC
91752303 -AA-AAAATC
1 AAATAAAATC
91752311 -AA-AAAATC
1 AAATAAAATC
91752319 AAA
1 AAA
91752322 AAGAGAAGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
8 16 0.35
9 8 0.17
10 7 0.15
11 6 0.13
12 6 0.13
13 3 0.07
ACGTcount: A:0.75, C:0.11, G:0.00, T:0.13
Consensus pattern (10 bp):
AAATAAAATC
Found at i:91752280 original size:18 final size:17
Alignment explanation
Indices: 91752271--91752323 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
91752261 AAATAAAATC
91752271 AAATC-AAAAATCAAAAAA
1 AAATCAAAAAATC--AAAA
91752289 AAATCAAAAAAATC-AAA
1 AAATC-AAAAAATCAAAA
91752306 AAATCAAAAAATCAAAA
1 AAATCAAAAAATCAAAA
91752323 A
1 A
91752324 GAGAAGAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
16 8 0.25
17 12 0.38
18 5 0.16
20 7 0.22
ACGTcount: A:0.77, C:0.11, G:0.00, T:0.11
Consensus pattern (17 bp):
AAATCAAAAAATCAAAA
Found at i:91752297 original size:8 final size:8
Alignment explanation
Indices: 91752286--91752323 Score: 67
Period size: 8 Copynumber: 4.6 Consensus size: 8
91752276 AAAAATCAAA
91752286 AAAAAATC
1 AAAAAATC
91752294 AAAAAAATC
1 -AAAAAATC
91752303 AAAAAATC
1 AAAAAATC
91752311 AAAAAATC
1 AAAAAATC
91752319 AAAAA
1 AAAAA
91752324 GAGAAGAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 21 0.72
9 8 0.28
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATC
Found at i:91752298 original size:12 final size:12
Alignment explanation
Indices: 91752255--91752300 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
91752245 AAAAAATAAT
*
91752255 AAAT-AAAAATA
1 AAATCAAAAAAA
**
91752266 AAATCAAATCAA
1 AAATCAAAAAAA
91752278 AAATC-AAAAAA
1 AAATCAAAAAAA
91752289 AAATCAAAAAAA
1 AAATCAAAAAAA
91752301 TCAAAAAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
11 13 0.46
12 15 0.54
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (12 bp):
AAATCAAAAAAA
Found at i:91753638 original size:44 final size:45
Alignment explanation
Indices: 91753550--91753653 Score: 104
Period size: 44 Copynumber: 2.3 Consensus size: 45
91753540 ATCAATGAAT
* ** * *
91753550 TCATAGATTTTATCCCCGTGAGGTAGCAAGAGAGCAGGCCGAAGA
1 TCATAGATCTTATCTTCTTGAGGTAGCAAGAGAGCAGACCGAAGA
** * *
91753595 TTGTAG-TCTTATCTTCTTGAGGTAGCAA-AGAAGCATACTGAAGA
1 TCATAGATCTTATCTTCTTGAGGTAGCAAGAG-AGCAGACCGAAGA
91753639 TCATAGATCTTATCT
1 TCATAGATCTTATCT
91753654 CCCTAAACAG
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
43 2 0.04
44 32 0.70
45 12 0.26
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
TCATAGATCTTATCTTCTTGAGGTAGCAAGAGAGCAGACCGAAGA
Found at i:91754167 original size:44 final size:44
Alignment explanation
Indices: 91754085--91754190 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
91754075 TTTAGCCACC
*** *
91754085 AGTCTTATCTCTCTAAGGTAACAAGAGAGCAGGTTGAAGTTTGT
1 AGTCTTATCTCTCTAAGGTAACAAGAGAGCACACTGAAGATTGT
* *
91754129 AGTCTTATCTTTCTAAGGTAGCAAG-GAAGCACACTGAAGATTGT
1 AGTCTTATCTCTCTAAGGTAACAAGAG-AGCACACTGAAGATTGT
* *
91754173 AGATTTTATCTCCCTAAG
1 AG-TCTTATCTCTCTAAG
91754191 CAGTAGTGGA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.02
44 38 0.75
45 12 0.24
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (44 bp):
AGTCTTATCTCTCTAAGGTAACAAGAGAGCACACTGAAGATTGT
Found at i:91754301 original size:177 final size:177
Alignment explanation
Indices: 91753570--91754272 Score: 931
Period size: 177 Copynumber: 4.0 Consensus size: 177
91753560 TATCCCCGTG
** * * * * *
91753570 AGGTAGCAAGAGAGCAGGCCGAAGATTGTAGTCTTATCTTCTTGAGGTAGCAAAGAAGCATACTG
1 AGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
** * * *
91753635 AAGATCATAGATCTTATCTCCCTAAACAGTAGAGGAGTAGATCGAAGATGGCAAATCTTATCTTC
66 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTC
* * *
91753700 TCGAGGTAGCA-GGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTA
131 CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTA
* *
91753746 AGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGAGGAAGCAAGAAAGCAGACTA
1 AGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
* * * * * *
91753811 AAGATTGTAGATCTTATTTCCCTAAGCAGTGGTGGAACTGATCGAAGATGACGAATCTTATCTTC
66 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTC
* * *
91753876 CCGATGTAGTAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTG
131 CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTA
* * * * * * *
91753923 ATGTGGTAAGAGAGTAAGTTGAAGTTTGAAGTCTTATCTTCCTTAGGTAGCAAGGAAGCAGACTA
1 AGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
* ** *
91753988 AAGATTGTAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATTTTC
66 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTC
* * * *
91754053 CCGAGGTAGTAGAGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTA
131 CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTA
* * * * *
91754100 AGGTAACAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTTCTAAGGTAGCAAGGAAGCACACTG
1 AGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
*
91754165 AAGATTGTAGATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTC
66 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTC
* * * * *
91754230 TCGAGGTAGCAGGGGAACAAATTTTAGCTACTAGTCTTATCTC
131 CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTC
91754273 CCTGAAGTTG
Statistics
Matches: 455, Mismatches: 71, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
176 118 0.26
177 337 0.74
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (177 bp):
AGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTA
AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTC
CCGAGGTAGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTA
Found at i:91755925 original size:15 final size:15
Alignment explanation
Indices: 91755902--91755936 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
91755892 TTATTCTAAA
*
91755902 ATTAATTTATATATT
1 ATTAATTTACATATT
*
91755917 ATTATTTTACATATT
1 ATTAATTTACATATT
91755932 ATTAA
1 ATTAA
91755937 CTTTTGATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTAATTTACATATT
Found at i:91758633 original size:23 final size:23
Alignment explanation
Indices: 91758607--91758692 Score: 88
Period size: 23 Copynumber: 3.7 Consensus size: 23
91758597 TATATATATC
*
91758607 GTATATGTTTTTATATATTTTAT
1 GTATATATTTTTATATATTTTAT
*
91758630 GTATATATTCTTA-ATATTATTA-
1 GTATATATTTTTATATATT-TTAT
*
91758652 GTTATATATCTTTTATATTATTTCAT
1 G-TATATAT-TTTTATA-TATTTTAT
91758678 GTATATA-TTTTATAT
1 GTATATATTTTTATAT
91758693 TATCCTTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
22 7 0.13
23 28 0.53
24 4 0.08
25 9 0.17
26 5 0.09
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.60
Consensus pattern (23 bp):
GTATATATTTTTATATATTTTAT
Found at i:91759009 original size:25 final size:24
Alignment explanation
Indices: 91758900--91759069 Score: 116
Period size: 25 Copynumber: 6.9 Consensus size: 24
91758890 TTTAATATTG
* *
91758900 TATTTTT-ATATATGTCATGTATA
1 TATTTTTAATATATATTATGTATA
* * *
91758923 TATTTCTAATA-CTA-TAT-TACA
1 TATTTTTAATATATATTATGTATA
*
91758944 T-TTTTTACATATTATCTTATGTATA
1 TATTTTTA-ATA-TATATTATGTATA
* *
91758969 TATTTTTTAAAAACTATATTATGTATG
1 TA-TTTTT-AATA-TATATTATGTATA
* * *
91758996 TATTTTTAACACTATATTACGTACA
1 TATTTTTAATA-TATATTATGTATA
*
91759021 TACTTTTAATATCATTATTATGTATA
1 TATTTTTAATAT-A-TATTATGTATA
91759047 TATTTTTAATATATATTTATGTA
1 TATTTTTAATATATA-TTATGTA
91759070 GTATTATTAA
Statistics
Matches: 113, Mismatches: 22, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
20 5 0.04
21 7 0.06
22 2 0.02
23 8 0.07
24 9 0.08
25 36 0.32
26 25 0.22
27 20 0.18
28 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.54
Consensus pattern (24 bp):
TATTTTTAATATATATTATGTATA
Found at i:91759056 original size:26 final size:26
Alignment explanation
Indices: 91758945--91759206 Score: 123
Period size: 26 Copynumber: 10.0 Consensus size: 26
91758935 TATATTACAT
*
91758945 TTTTTACATAT-TATCTTATGTATATA
1 TTTTTA-ATATCTATATTATGTATATA
* * *
91758971 TTTTTTAAAAACTATATTATGTATGTA
1 -TTTTTAATATCTATATTATGTATATA
* * *
91758998 TTTTTAACA-CTATATTACGTACATA
1 TTTTTAATATCTATATTATGTATATA
*
91759023 CTTTTAATATC-ATTATTATGTATATA
1 TTTTTAATATCTA-TATTATGTATATA
*
91759049 TTTTTAATATATAT-TTATGTAGTATTA
1 TTTTTAATATCTATATTATGTA-TA-TA
* * *
91759076 TTAATAGTT-GTTTTTAATATTAT-TAT-TA
1 TT--T--TTAATATCT-ATATTATGTATATA
* *
91759104 TTTCTAATATGTATA-TAT-TATATA
1 TTTTTAATATCTATATTATGTATATA
* * * * * *
91759128 TATATATTTTCAATACTATGTATATA
1 TTTTTAATATCTATATTATGTATATA
*
91759154 CTTTTTAATA-CTATTATTATGTTTATA
1 -TTTTTAATATCTA-TATTATGTATATA
* *
91759181 -TTTTAATATATATACGTATGTATATA
1 TTTTTAATATCTATA-TTATGTATATA
91759207 GGTAACATTA
Statistics
Matches: 178, Mismatches: 37, Indels: 41
0.70 0.14 0.16
Matches are distributed among these distances:
23 6 0.03
24 15 0.08
25 44 0.25
26 54 0.30
27 40 0.22
28 4 0.02
29 1 0.01
30 4 0.02
31 6 0.03
32 4 0.02
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (26 bp):
TTTTTAATATCTATATTATGTATATA
Found at i:91759153 original size:20 final size:21
Alignment explanation
Indices: 91759128--91759167 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91759118 ATATTATATA
91759128 TATATA-TTTTCAATACTATG
1 TATATACTTTTCAATACTATG
*
91759148 TATATACTTTTTAATACTAT
1 TATATACTTTTCAATACTAT
91759168 TATTATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TATATACTTTTCAATACTATG
Found at i:91764171 original size:22 final size:23
Alignment explanation
Indices: 91764142--91764195 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
91764132 CCATGACTAA
*
91764142 CATTCATTCGTCATTTATTCAAT
1 CATTCATTCGTCATTCATTCAAT
* *
91764165 -ATTCATTTGTCATTCATTCATT
1 CATTCATTCGTCATTCATTCAAT
91764187 CATTCATTC
1 CATTCATTC
91764196 ATTGCATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.24, C:0.22, G:0.04, T:0.50
Consensus pattern (23 bp):
CATTCATTCGTCATTCATTCAAT
Found at i:91764183 original size:4 final size:4
Alignment explanation
Indices: 91764174--91764198 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
91764164 TATTCATTTG
91764174 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
91764199 GCATGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:91767719 original size:50 final size:50
Alignment explanation
Indices: 91767611--91767796 Score: 273
Period size: 50 Copynumber: 3.7 Consensus size: 50
91767601 ACATGTCAAA
** * * *
91767611 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAAT
* * *
91767662 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
* *
91767712 GCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
91767762 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
91767797 TTACCCAAAT
Statistics
Matches: 121, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 93 0.77
51 28 0.23
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
Found at i:91767912 original size:13 final size:13
Alignment explanation
Indices: 91767891--91767921 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
91767881 GCTTAGATCA
*
91767891 TCATCAAATAAAT
1 TCATAAAATAAAT
91767904 TCATAAAATAAAT
1 TCATAAAATAAAT
91767917 TCATA
1 TCATA
91767922 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:91775198 original size:74 final size:75
Alignment explanation
Indices: 91775103--91775492 Score: 416
Period size: 73 Copynumber: 5.1 Consensus size: 75
91775093 TGATGTTTTT
* * *
91775103 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACAC-TTAA
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGA
91775166 GGTATTTTCA
66 GGTATTTTCA
91775176 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTG
1 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTG
*
91775240 AGGTAATGTT-A
65 AGGT-ATTTTCA
* * *
91775251 ATTTCTGTTCTTCAGTTTGTGTTTCAAAAAATCAATTCATATTGCGAGAGATGAGTTGAGTCTCA
1 ATTTCTGTT-TTCA-----------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
91775316 GGTCACACACTGAGGTATTTTCA
54 GG-CACACGCTGAGGTATTTTCA
* *
91775339 ATTTATG-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTG
*
91775401 AGGTATTTTTA
65 AGGTATTTTCA
* * * * *
91775412 ATTTCTGTTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTTAGGTTACACACT
1 ATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCT
*
91775477 TAGGTATTTTCA
64 GAGGTATTTTCA
91775489 ATTT
1 ATTT
91775493 TTACTTTTTC
Statistics
Matches: 270, Mismatches: 25, Indels: 40
0.81 0.07 0.12
Matches are distributed among these distances:
73 70 0.26
74 51 0.19
75 22 0.08
76 4 0.01
77 58 0.21
86 42 0.16
87 5 0.02
88 18 0.07
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGA
GGTATTTTCA
Found at i:91775457 original size:77 final size:75
Alignment explanation
Indices: 91775272--91775535 Score: 316
Period size: 73 Copynumber: 3.5 Consensus size: 75
91775262 TCAGTTTGTG
*
91775272 TTTCAAAAAATCAATTCATATTGCGAGAGATGAGTTGAGTCTCAGGTCACACACTGAGGTATTTT
1 TTTC-AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCAGGTCACACACTGAGGTATTTT
91775337 CAATTTATG--
65 CAATTTATGTT
* * * * *
91775346 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCAGGTCACACACTGAGGTATTTTC
*
91775411 AATTTCTGTT
66 AATTTATGTT
* * * * *
91775421 TTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTTAGGTTACACACTTAGGTATTT
1 TTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCAGGTCACACACTGAGGTATTT
* *
91775486 TCAATTTTTACTT
64 TCAATTTAT-GTT
* * * *
91775499 TTTCAAAAGTTAACTCATAATCCGAGAGATGAGTTGA
1 TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGA
91775536 ACTTCAATTC
Statistics
Matches: 164, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
73 62 0.38
74 4 0.02
75 4 0.02
76 29 0.18
77 59 0.36
78 6 0.04
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (75 bp):
TTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCAGGTCACACACTGAGGTATTTTC
AATTTATGTT
Found at i:91776585 original size:15 final size:15
Alignment explanation
Indices: 91776575--91776625 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
91776565 TTTTTTCTTT
91776575 TTATTTATTTTATTA
1 TTATTTATTTTATTA
**
91776590 TTATTTATACTATTA
1 TTATTTATTTTATTA
91776605 -TATTTTATTATTTATTA
1 TTA-TTTA-T-TTTATTA
91776622 TTAT
1 TTAT
91776626 ATCCATTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 2 0.07
15 17 0.61
16 1 0.04
17 6 0.21
18 2 0.07
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTTATTTTATTA
Found at i:91776615 original size:22 final size:20
Alignment explanation
Indices: 91776587--91776627 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
91776577 ATTTATTTTA
91776587 TTATTATTTATACTATTATATT
1 TTATTATTTAT--TATTATATT
91776609 TTATTATTTATTATTATAT
1 TTATTATTTATTATTATAT
91776628 CCATTCTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATTATTTATTATTATATT
Found at i:91776796 original size:23 final size:23
Alignment explanation
Indices: 91776756--91777367 Score: 135
Period size: 22 Copynumber: 26.3 Consensus size: 23
91776746 ATCATTTCTA
* *
91776756 ATATATATATATCATATATGTTTTT
1 ATATATAT-TAT-GTATATATTTTT
91776781 ATATATATTATGTATATATTTTT
1 ATATATATTATGTATATATTTTT
91776804 A-ATATTATTA-GTTATATATCTTTT
1 ATATA-TATTATG-TATATAT-TTTT
91776828 ATACTAT-TTCATGTATATATTTTT
1 ATA-TATATT-ATGTATATATTTTT
** *
91776852 ATAT-TATCCT-TAT-TATTATT
1 ATATATATTATGTATATATTTTT
91776872 AT-TA-A-TAT-TAATATATGTTTT
1 ATATATATTATGT-ATATAT-TTTT
* *
91776893 AT-TATATGTA--TATAT-CTTTA
1 ATATATAT-TATGTATATATTTTT
*
91776913 ATATATATT-TGTATATATTTAT
1 ATATATATTATGTATATATTTTT
*
91776935 GTA-ATATTAT-TA-ATAGTTGTTT
1 ATATATATTATGTATATA-TT-TTT
* *
91776957 -TTTAACATTAT-TAT-TATTTCTAAT
1 ATAT-ATATTATGTATATATTT-T--T
* * **
91776981 ATGTATATACTATGTAAATATTTCA
1 A--TATATATTATGTATATATTTTT
*
91777006 ATACTATATTATGTATACATTTTTT
1 ATA-TATATTATGTATATA-TTTTT
*
91777031 ATATATATTACATATATATATCTTTT
1 ATATATATT--ATGTATATAT-TTTT
*
91777057 -TA-ATA-T-TGTAT-T-TTTAT
1 ATATATATTATGTATATATTTTT
* * *
91777074 ATATGTCATGTA--TATAT-TTCTA
1 ATATAT-AT-TATGTATATATTTTT
*
91777096 ATACTATATTA-C-AT-T-TTTTT
1 ATA-TATATTATGTATATATTTTT
*
91777116 ACATATTATCTTATGTATATATTTTTT
1 --ATA-TATATTATGTATATA-TTTTT
* *
91777143 AAAAACTATATTATGTATTTATTTTT
1 --ATA-TATATTATGTATATATTTTT
* * *
91777169 AACACTATATTACGTACATATTTTT
1 -ATA-TATATTATGTATATATTTTT
91777194 AATATCATTATTATGTATATATTTTT
1 -ATAT-A-TATTATGTATATATTTTT
*
91777220 A-ATATATATATGTGTATA--TTT
1 ATATATAT-TATGTATATATTTTT
*
91777241 ATGTAGTATTAT-TA-ATAGTTGTTT
1 ATATA-TATTATGTATATA-TT-TTT
*
91777265 TTA-ATATTAT-TAT-TATTTCTAAT
1 ATATATATTATGTATATATTT-T--T
*
91777288 ATGTATATATTATATATATA-TTTT
1 A--TATATATTATGTATATATTTTT
*
91777312 -CA-ATATTATGTATATACTTTTT
1 ATATATATTATGTATATA-TTTTT
* *
91777334 AATACTATTATTATGTTTATATTTTA
1 -ATA-TA-TATTATGTATATATTTTT
91777360 ATATATAT
1 ATATATAT
91777368 GCGTATGTAT
Statistics
Matches: 443, Mismatches: 65, Indels: 160
0.66 0.10 0.24
Matches are distributed among these distances:
17 3 0.01
18 5 0.01
19 6 0.01
20 46 0.10
21 47 0.11
22 61 0.14
23 59 0.13
24 54 0.12
25 60 0.14
26 53 0.12
27 42 0.09
28 7 0.02
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (23 bp):
ATATATATTATGTATATATTTTT
Found at i:91776797 original size:25 final size:24
Alignment explanation
Indices: 91776756--91776855 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 24
91776746 ATCATTTCTA
*
91776756 ATATATATATAT-CATATATGTTTTT
1 ATATATAT-TATGTATATAT-TTTTT
*
91776781 ATATATATTATGTATATATTTTTA
1 ATATATATTATGTATATATTTTTT
*
91776805 ATAT-TATTA-GTTATATATCTTTT
1 ATATATATTATG-TATATATTTTTT
91776828 ATACTAT-TTCATGTATATA-TTTTT
1 ATA-TATATT-ATGTATATATTTTTT
91776852 ATAT
1 ATAT
91776856 TATCCTTATT
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.02
23 19 0.30
24 21 0.33
25 22 0.34
26 1 0.02
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (24 bp):
ATATATATTATGTATATATTTTTT
Found at i:91776946 original size:65 final size:66
Alignment explanation
Indices: 91776770--91776957 Score: 160
Period size: 65 Copynumber: 2.8 Consensus size: 66
91776760 ATATATATCA
* * *
91776770 TATATGTTTTTATATATATTATGTATATATTT-TTAATATTATTAGTTATATATCTTTTATACTA
1 TATATATTTTAATATATATT-TGTATATATTTATTAATATTATTA---ATATATGTTTTATA-TA
91776834 TTTCATG
61 -TTCATG
* * * *
91776841 TATATATTTTTATAT-TATCCT-TAT-TA-TTATTATTAATATTAATATATGTTTTAT-TA-T-A
1 TATATATTTTAATATATAT-TTGTATATATTTATTAATATTATTAATATATGTTTTATATATTCA
91776899 TG
65 TG
91776901 TATATATCTTTAATATATATTTGTATATATTTATGTAATATTATTAATAGT-TGTTTT
1 TATATAT-TTTAATATATATTTGTATATATTTAT-TAATATTATTAATA-TATGTTTT
91776958 TTAACATTAT
Statistics
Matches: 99, Mismatches: 9, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
60 10 0.10
61 9 0.09
62 6 0.06
63 4 0.04
64 4 0.04
65 30 0.30
66 1 0.01
67 2 0.02
68 12 0.12
69 3 0.03
70 4 0.04
71 14 0.14
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (66 bp):
TATATATTTTAATATATATTTGTATATATTTATTAATATTATTAATATATGTTTTATATATTCAT
G
Found at i:91777175 original size:25 final size:25
Alignment explanation
Indices: 91777126--91777240 Score: 110
Period size: 25 Copynumber: 4.6 Consensus size: 25
91777116 ACATATTATC
91777126 TTATGTATATATTTTTTAAAAACTATA
1 TTATGTATATA-TTTTT-AAAACTATA
* *
91777153 TTATGTATTTATTTTTAACACTATA
1 TTATGTATATATTTTTAAAACTATA
* * *
91777178 TTACGTACATATTTTTAATA-TCATTA
1 TTATGTATATATTTTTAAAACT-A-TA
*
91777204 TTATGTATATATTTTTAATA-TATA
1 TTATGTATATATTTTTAAAACTATA
*
91777228 -TATGTGTATATTT
1 TTATGTATATATTT
91777241 ATGTAGTATT
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
23 12 0.16
24 3 0.04
25 26 0.34
26 26 0.34
27 10 0.13
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (25 bp):
TTATGTATATATTTTTAAAACTATA
Found at i:91777317 original size:20 final size:21
Alignment explanation
Indices: 91777294--91777337 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
91777284 TAATATGTAT
91777294 ATATTATATATATA-TTTTCA
1 ATATTATATATATACTTTTCA
* *
91777314 ATATTATGTATATACTTTTTA
1 ATATTATATATATACTTTTCA
91777335 ATA
1 ATA
91777338 CTATTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (21 bp):
ATATTATATATATACTTTTCA
Found at i:91777318 original size:46 final size:46
Alignment explanation
Indices: 91777263--91777368 Score: 119
Period size: 47 Copynumber: 2.3 Consensus size: 46
91777253 TAATAGTTGT
*
91777263 TTTTAATATTAT-TAT-TA-TTTCTAATATGTATATATTATATATATA
1 TTTTAATATTATGTATATACTTTCTAATA-CTAT-TATTATATATATA
* * *
91777308 TTTTCAATATTATGTATATACTTTTTAATACTATTATTATGTTTATA
1 TTTT-AATATTATGTATATACTTTCTAATACTATTATTATATATATA
91777355 TTTTAATATATATG
1 TTTTAATAT-TATG
91777369 CGTATGTATA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
45 4 0.08
46 13 0.25
47 22 0.42
48 5 0.10
49 8 0.15
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (46 bp):
TTTTAATATTATGTATATACTTTCTAATACTATTATTATATATATA
Found at i:91777365 original size:70 final size:70
Alignment explanation
Indices: 91777175--91777367 Score: 159
Period size: 70 Copynumber: 2.7 Consensus size: 70
91777165 TTTTAACACT
* * * * *
91777175 ATATTACGTACATATTTTTAATATCATTATTATGTATATATTTTTAATATATA-TATGTGTATAT
1 ATATTATGTATATATTTTTAATAT-ATTATTATGTTTATA-TTTTAATATATATTATATATATAT
*
91777239 TTATGTA
64 TTATGCA
* * * *
91777246 GTATTAT-TAATAGTTGTTTTTAATATTATTATTAT-TTCTA-A-TAT-GTATATATTATATATA
1 ATATTATGT-ATA--TATTTTTAATA-TATTATTATGTT-TATATTTTAATATATATTATATATA
91777306 TATTT-T-CA
61 TATTTATGCA
91777314 ATATTATGTATATACTTTTTAATACTATTATTATGTTTATATTTTAATATATAT
1 ATATTATGTATATA-TTTTTAATA-TATTATTATGTTTATATTTTAATATATAT
91777368 GCGTATGTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
66 1 0.01
67 20 0.21
68 13 0.14
69 10 0.11
70 21 0.22
71 7 0.07
72 2 0.02
73 20 0.21
74 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (70 bp):
ATATTATGTATATATTTTTAATATATTATTATGTTTATATTTTAATATATATTATATATATATTT
ATGCA
Found at i:91783014 original size:16 final size:15
Alignment explanation
Indices: 91782981--91783054 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 15
91782971 TAAAATTCTA
* *
91782981 AAAATATCAAAAGAT
1 AAAATATTAAAAAAT
91782996 AAAATATTAAAAAATT
1 AAAATATTAAAAAA-T
*
91783012 AAAACT-TGTCCTAAAAAT
1 AAAA-TAT-T--AAAAAAT
*
91783030 AAAATATTAGAAAATT
1 AAAATATTA-AAAAAT
91783046 AAAATATTA
1 AAAATATTA
91783055 TCATAATGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
15 12 0.26
16 20 0.43
17 4 0.09
18 6 0.13
19 5 0.11
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.28
Consensus pattern (15 bp):
AAAATATTAAAAAAT
Found at i:91783976 original size:22 final size:22
Alignment explanation
Indices: 91783946--91783987 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
91783936 TTTTGAACAC
* *
91783946 AAGATAAAACAAAAGTTCATTT
1 AAGACAAAAAAAAAGTTCATTT
*
91783968 AAGACAAAAAAAAATTTCAT
1 AAGACAAAAAAAAAGTTCAT
91783988 GCAACTAAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.24
Consensus pattern (22 bp):
AAGACAAAAAAAAAGTTCATTT
Found at i:91789129 original size:29 final size:29
Alignment explanation
Indices: 91789085--91789143 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
91789075 AATTTTAAAT
* *
91789085 TTTTACCTAAAGGTATATATTAACGTTAA
1 TTTTACCTAAACGTATATATTAACATTAA
*
91789114 TTTTACCTAAACGTATATATTTACATTAA
1 TTTTACCTAAACGTATATATTAACATTAA
91789143 T
1 T
91789144 CTTAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (29 bp):
TTTTACCTAAACGTATATATTAACATTAA
Found at i:91793148 original size:14 final size:14
Alignment explanation
Indices: 91793124--91793157 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
91793114 TGAAACATCG
91793124 TAATATTTATTATTT
1 TAAT-TTTATTATTT
91793139 TAATTTTATTATTT
1 TAATTTTATTATTT
91793153 TAATT
1 TAATT
91793158 AAAATATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TAATTTTATTATTT
Found at i:91798484 original size:13 final size:13
Alignment explanation
Indices: 91798468--91798533 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
91798458 TTTAAACCAA
*
91798468 ACTTTTTAAGAGC
1 ACTTTTTAAAAGC
* *
91798481 ACTTCTCAAAAGC
1 ACTTTTTAAAAGC
* *
91798494 ACTTTTTCACAGC
1 ACTTTTTAAAAGC
91798507 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
*
91798520 ACTTTTCAAAAGC
1 ACTTTTTAAAAGC
91798533 A
1 A
91798534 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:91806172 original size:16 final size:16
Alignment explanation
Indices: 91806151--91806182 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
91806141 ACGTATAAGA
91806151 GTTTTGTTATTTATAT
1 GTTTTGTTATTTATAT
91806167 GTTTTGTTATTTATAT
1 GTTTTGTTATTTATAT
91806183 ATAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (16 bp):
GTTTTGTTATTTATAT
Found at i:91806608 original size:36 final size:36
Alignment explanation
Indices: 91806561--91806642 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
91806551 TTGTGAACCA
* *
91806561 TGTTAACTTGGTGAAT-TATATTATTATGGCGAACTG
1 TGTTAATTTGGTG-ATCTATATTAATATGGCGAACTG
* * *
91806597 TGTTAATTTGGTGATCTGTATTAATCTGGTGAACTG
1 TGTTAATTTGGTGATCTATATTAATATGGCGAACTG
*
91806633 TATTAATTTG
1 TGTTAATTTG
91806643 CCAAATTGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 2 0.05
36 37 0.95
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (36 bp):
TGTTAATTTGGTGATCTATATTAATATGGCGAACTG
Found at i:91806620 original size:18 final size:18
Alignment explanation
Indices: 91806563--91806642 Score: 81
Period size: 18 Copynumber: 4.4 Consensus size: 18
91806553 GTGAACCATG
* * *
91806563 TTAACTTGGTGAATTATA
1 TTAATTTGGTGAACTGTA
* *
91806581 TT-ATTATGGCGAACTGTG
1 TTAATT-TGGTGAACTGTA
*
91806599 TTAATTTGGTGATCTGTA
1 TTAATTTGGTGAACTGTA
*
91806617 TTAATCTGGTGAACTGTA
1 TTAATTTGGTGAACTGTA
91806635 TTAATTTG
1 TTAATTTG
91806643 CCAAATTGTG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
17 2 0.04
18 44 0.90
19 3 0.06
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.45
Consensus pattern (18 bp):
TTAATTTGGTGAACTGTA
Found at i:91807299 original size:17 final size:17
Alignment explanation
Indices: 91807277--91807350 Score: 67
Period size: 17 Copynumber: 4.4 Consensus size: 17
91807267 TTATGATGGA
91807277 GCATGAACTGTTATTTT
1 GCATGAACTGTTATTTT
* **
91807294 GCATGAATTGTTATTCG
1 GCATGAACTGTTATTTT
* * *
91807311 GTATGAACTGATATTTC
1 GCATGAACTGTTATTTT
** *
91807328 ATATGAACTATTATTTT
1 GCATGAACTGTTATTTT
91807345 GCATGA
1 GCATGA
91807351 GTTGTAAATT
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 43 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (17 bp):
GCATGAACTGTTATTTT
Found at i:91807342 original size:51 final size:51
Alignment explanation
Indices: 91807279--91807387 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
91807269 ATGATGGAGC
* * *
91807279 ATGAACTGTTATTTTGCATGAATTGT-TATTCGGTATGAACTGATATTTCAT
1 ATGAACTATTATTTTGCATGAATTGTAAATT-GGTAAGAACTGATATTTCAT
* *
91807330 ATGAACTATTATTTTGCATGAGTTGTAAATTGGTAAGAACTGTTATTTCAT
1 ATGAACTATTATTTTGCATGAATTGTAAATTGGTAAGAACTGATATTTCAT
*
91807381 ATAAACT
1 ATGAACT
91807388 GATGTTTGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 48 0.94
52 3 0.06
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (51 bp):
ATGAACTATTATTTTGCATGAATTGTAAATTGGTAAGAACTGATATTTCAT
Found at i:91809547 original size:31 final size:31
Alignment explanation
Indices: 91809509--91809573 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
91809499 GCTAAAAAGA
*
91809509 TAATAAAGATGGCTCTTTTTTTGTTTGGCAT
1 TAATAAAGATAGCTCTTTTTTTGTTTGGCAT
91809540 TAATAAAGATAGCTCTTTTTTTGTTTGGCAT
1 TAATAAAGATAGCTCTTTTTTTGTTTGGCAT
91809571 TAA
1 TAA
91809574 GTATGCTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (31 bp):
TAATAAAGATAGCTCTTTTTTTGTTTGGCAT
Found at i:91816579 original size:15 final size:14
Alignment explanation
Indices: 91816547--91816612 Score: 80
Period size: 14 Copynumber: 4.6 Consensus size: 14
91816537 TATTTGAATA
*
91816547 TATTCTTTTTCAAT
1 TATTATTTTTCAAT
*
91816561 TATTATTTTTGAAT
1 TATTATTTTTCAAT
91816575 ATATTATATTTTCAAT
1 -TATTAT-TTTTCAAT
91816591 TATTATTTTTCTAAT
1 TATTATTTTTC-AAT
91816606 T-TTATTT
1 TATTATTT
91816613 ATATTATTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
14 23 0.50
15 16 0.35
16 7 0.15
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (14 bp):
TATTATTTTTCAAT
Found at i:91816589 original size:30 final size:29
Alignment explanation
Indices: 91816539--91816600 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
91816529 AATTTAATTA
*
91816539 TTTGAATATATTCTTTTTCAATTATTATT
1 TTTGAATATATTATTTTTCAATTATTATT
91816568 TTTGAATATATTATATTTTCAATTATTATT
1 TTTGAATATATTAT-TTTTCAATTATTATT
91816598 TTT
1 TTT
91816601 CTAATTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (29 bp):
TTTGAATATATTATTTTTCAATTATTATT
Found at i:91816599 original size:29 final size:28
Alignment explanation
Indices: 91816535--91816599 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 28
91816525 AATTAATTTA
*
91816535 ATTA-TTTGAATATATTCTTTTTCAATT
1 ATTATTTTGAATATATTATTTTTCAATT
91816562 ATTATTTTTGAATATATTATATTTTCAATT
1 ATTA-TTTTGAATATATTAT-TTTTCAATT
91816592 ATTATTTT
1 ATTATTTT
91816600 TCTAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 4 0.12
29 17 0.50
30 13 0.38
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (28 bp):
ATTATTTTGAATATATTATTTTTCAATT
Found at i:91816735 original size:16 final size:16
Alignment explanation
Indices: 91816714--91816744 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91816704 AACTAGTTCA
*
91816714 TATATATCTATATAAC
1 TATATATATATATAAC
91816730 TATATATATATATAA
1 TATATATATATATAA
91816745 GGTACTAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (16 bp):
TATATATATATATAAC
Found at i:91817828 original size:16 final size:16
Alignment explanation
Indices: 91817791--91817852 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
91817781 TTTAGTTTGC
91817791 TGTAATAAAATAGAAT
1 TGTAATAAAATAGAAT
**
91817807 AATAATAAAATA-AAGT
1 TGTAATAAAATAGAA-T
* *
91817823 TGTAATATAATAGAAC
1 TGTAATAAAATAGAAT
* *
91817839 TATAATGAAATAGA
1 TGTAATAAAATAGA
91817853 TCTGTAATCA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
15 2 0.06
16 31 0.89
17 2 0.06
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (16 bp):
TGTAATAAAATAGAAT
Found at i:91817859 original size:32 final size:33
Alignment explanation
Indices: 91817790--91817860 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
91817780 ATTTAGTTTG
91817790 CTGTAATAAAATAGAATAATAATAAAATAAAGT
1 CTGTAATAAAATAGAATAATAATAAAATAAAGT
* * *
91817823 -TGTAATATAATAGAACT-ATAATGAAATAGA-T
1 CTGTAATAAAATAGAA-TAATAATAAAATAAAGT
91817854 CTGTAAT
1 CTGTAAT
91817861 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
31 1 0.03
32 31 0.94
33 1 0.03
ACGTcount: A:0.54, C:0.04, G:0.11, T:0.31
Consensus pattern (33 bp):
CTGTAATAAAATAGAATAATAATAAAATAAAGT
Found at i:91818142 original size:59 final size:59
Alignment explanation
Indices: 91818019--91818153 Score: 191
Period size: 59 Copynumber: 2.3 Consensus size: 59
91818009 TTGTTATTAA
* * *
91818019 ATTTTAAGATGATTATTATTAAAAATATTTTAATAATAAATAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAAAATAATTTAATAATAAATAATAAATAATTTAATCAT
* * * *
91818078 ATTTTAGTATAGTTATTATTAAATATAATTTAATAA-AAATAATATATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAAAATAATTTAATAATAAATAATAAATAATTTAATCAT
91818136 ATTTTTAATATAATTATT
1 A-TTTTAATATAATTATT
91818154 TTTATATTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
58 22 0.33
59 44 0.67
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (59 bp):
ATTTTAATATAATTATTATTAAAAATAATTTAATAATAAATAATAAATAATTTAATCAT
Found at i:91828841 original size:17 final size:18
Alignment explanation
Indices: 91828815--91828855 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
91828805 ATTAAATCTA
*
91828815 TATAAGATATTAT-TTAT
1 TATAAAATATTATCTTAT
91828832 TATAAAATATTATCTTAT
1 TATAAAATATTATCTTAT
91828850 TATAAA
1 TATAAA
91828856 CCAAAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (18 bp):
TATAAAATATTATCTTAT
Found at i:91830267 original size:21 final size:20
Alignment explanation
Indices: 91830228--91830267 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91830218 CTCGTGTTTC
*
91830228 AATACATAAGATTTTATAAA
1 AATACATAAGATCTTATAAA
*
91830248 AATACATACCGATCTTATAA
1 AATACATA-AGATCTTATAA
91830268 GGTGTAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (20 bp):
AATACATAAGATCTTATAAA
Found at i:91836836 original size:22 final size:22
Alignment explanation
Indices: 91836811--91836854 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
91836801 TTATTTTTTT
*
91836811 ATAA-AAATATATAAATTTTATA
1 ATAATAAATATA-AAATTATATA
*
91836833 ATAATACATATAAAATTATATA
1 ATAATAAATATAAAATTATATA
91836855 CATATTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAATAAATATAAAATTATATA
Found at i:91836843 original size:21 final size:19
Alignment explanation
Indices: 91836807--91836846 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
91836797 ATGTTTATTT
*
91836807 TTTTATAAAAATATATAAA
1 TTTTATAAAAACATATAAA
91836826 TTTTATAATAATACATATAAA
1 TTTTATAA-AA-ACATATAAA
91836847 ATTATATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 2 0.11
21 8 0.44
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTTATAAAAACATATAAA
Found at i:91838793 original size:28 final size:26
Alignment explanation
Indices: 91838753--91838804 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
91838743 TTCCTTTTAC
*
91838753 TAAAAAACTAAAATTAATTATAAAAAA
1 TAAAAAACTAAAATAAATTA-AAAAAA
91838780 TAAAATAACTAAAATAAATTAAAAA
1 TAAAA-AACTAAAATAAATTAAAAA
91838805 GATAGAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (26 bp):
TAAAAAACTAAAATAAATTAAAAAAA
Found at i:91838859 original size:21 final size:22
Alignment explanation
Indices: 91838827--91838867 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
91838817 TTCCTTGTAA
*
91838827 AAATCTTAAGTTTTTTCATTCT
1 AAATCTTAAGTTTTTCCATTCT
91838849 AAATC-TAAGTTTTTCCATT
1 AAATCTTAAGTTTTTCCATT
91838868 ATAAGTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (22 bp):
AAATCTTAAGTTTTTCCATTCT
Found at i:91841505 original size:35 final size:35
Alignment explanation
Indices: 91841449--91841533 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
91841439 ATATCTATAA
*
91841449 CTGTATCTGTATCTGAAATGGGCTTAGGCCCGAAT
1 CTGTATCTGTATCTGAAATGGGCTCAGGCCCGAAT
* *
91841484 CTGTTTCTGTATCTGACATGGGCTCAGGCCCGAAT
1 CTGTATCTGTATCTGAAATGGGCTCAGGCCCGAAT
91841519 CTGTATCTGTATCTG
1 CTGTATCTGTATCTG
91841534 GATTGATGCG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (35 bp):
CTGTATCTGTATCTGAAATGGGCTCAGGCCCGAAT
Found at i:91846212 original size:5 final size:5
Alignment explanation
Indices: 91846202--91846228 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
91846192 ATAAGAATAT
91846202 TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TA
91846229 ACTAAACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:91851028 original size:22 final size:22
Alignment explanation
Indices: 91851000--91851042 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
91850990 CAAGTCTATG
91851000 CATGATACTAGCACACTTTATA
1 CATGATACTAGCACACTTTATA
91851022 CATGATACTAGCACACTTTAT
1 CATGATACTAGCACACTTTAT
91851043 GCTTGTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (22 bp):
CATGATACTAGCACACTTTATA
Found at i:91854349 original size:11 final size:11
Alignment explanation
Indices: 91854333--91854382 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
91854323 ATTTAAAAAT
91854333 ATTTTTATATA
1 ATTTTTATATA
*
91854344 ATTTTTATCTA
1 ATTTTTATATA
*
91854355 ATATTTA-ATA
1 ATTTTTATATA
91854365 ATTTTT-TATA
1 ATTTTTATATA
*
91854375 TTTTTTAT
1 ATTTTTAT
91854383 TTATTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
10 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (11 bp):
ATTTTTATATA
Done.