Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 29 of 318
Found at i:10730583 original size:21 final size:19
Alignment explanation
Indices: 10730547--10730586 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
10730537 AAAGCAAAAA
10730547 AAAAAAAAAATAAAGAAAG
1 AAAAAAAAAATAAAGAAAG
*
10730566 AAAAGAAAAAT-AAG-AAG
1 AAAAAAAAAATAAAGAAAG
10730583 AAAA
1 AAAA
10730587 TATAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 3 0.15
19 10 0.50
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (19 bp):
AAAAAAAAAATAAAGAAAG
Found at i:10732568 original size:190 final size:189
Alignment explanation
Indices: 10732245--10732619 Score: 660
Period size: 190 Copynumber: 2.0 Consensus size: 189
10732235 ACAAGATCTC
* *
10732245 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTTCTTTAATTTCATTTATGTGACGGGCTT
1 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGGCTT
*
10732310 CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTTAGGTTATATAAGGGCATTGATA
66 CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
10732375 CTGTCTGGTTTCTTTTGTCATAAGAGGCGGATATAAGCTTATTGTACAGGGATTCTAAAA
131 CTGTCTGGTTTCTTTTGTCATAAGA-GCGGATATAAGCTTATTGTACAGGGATTCTAAAA
* **
10732435 TAAAGAAATATCTGAAATAAAAATTAGTTAGAATATTGCTTTAATTTCATTTATGTGAAGGTTTT
1 TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGGCTT
*
10732500 TTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
66 CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
* *
10732565 CTGTCTGGTTTCTTTTGTCATAAGAGCGTATCTAAGCTTATTGTACAGGGATTCT
131 CTGTCTGGTTTCTTTTGTCATAAGAGCGGATATAAGCTTATTGTACAGGGATTCT
10732620 GAGATGACTC
Statistics
Matches: 176, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
189 28 0.16
190 148 0.84
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (189 bp):
TAAAGAAATATCTGAAATAAAAATTAGATAGAATATTGCTTTAATTTCATTTATGTGAAGGGCTT
CTACCAACATTTTGCTTTATCTCTATTTCTCTCATTTTTCTTAAGGTTATATAAGGGCATTGATA
CTGTCTGGTTTCTTTTGTCATAAGAGCGGATATAAGCTTATTGTACAGGGATTCTAAAA
Found at i:10733639 original size:6 final size:6
Alignment explanation
Indices: 10733630--10733661 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
10733620 AAAAAGAGAC
10733630 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
10733662 TCTTAATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:10733756 original size:115 final size:115
Alignment explanation
Indices: 10733554--10733764 Score: 361
Period size: 115 Copynumber: 1.8 Consensus size: 115
10733544 ACTTTGTAAG
* * * *
10733554 AGTCATATGCATTTCTTTTGAAATCTCGAGGTTGACCGAGCAATATAACTCTGGTTATACACGAA
1 AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACACGAA
*
10733619 GAAAAAGAGACAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAATCTTAAT
66 GAAAAAGAGAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAATCTTAAT
10733669 AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACAC-AG
1 AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACACGA-
10733733 AGAAAAAGAGAAAAAAAGAAAAAGAAAAAGAA
65 AGAAAAAGAGAAAAAAAGAAAAAGAAAAAGAA
10733765 TCTTATGCCA
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
114 1 0.01
115 89 0.99
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (115 bp):
AGTCATATGCAGTTCTTTTAAAATCTCGAAGTTGACAGAGCAATATAACTCTGGTTATACACGAA
GAAAAAGAGAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAATCTTAAT
Found at i:10747868 original size:105 final size:105
Alignment explanation
Indices: 10747679--10747884 Score: 313
Period size: 105 Copynumber: 2.0 Consensus size: 105
10747669 ACCGAAGAGC
* * * * *
10747679 TTTCTTTCAAAGGCGTATCTTTGTGCTGGTCATTTTAGCTCATTTCATTTTTAGATTCCTCCTCG
1 TTTCATTCAAAAGCGTATCTTTGTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTCG
*
10747744 GCTTCTTGATTTTACTTTGTGATTGTTGAGATGCTTGAGT
66 GCTTCTTGATTTTACTTTGTGATTGCTGAGATGCTTGAGT
* * *
10747784 TTTCATTCAAAAGTGTATCTTTTTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTTG
1 TTTCATTCAAAAGCGTATCTTTGTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTCG
* *
10747849 GCTTCTTGCTTTTATTTTGTGATTGCTGAGATGCTT
66 GCTTCTTGATTTTACTTTGTGATTGCTGAGATGCTT
10747885 TCAATCTGTT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
105 90 1.00
ACGTcount: A:0.16, C:0.18, G:0.17, T:0.49
Consensus pattern (105 bp):
TTTCATTCAAAAGCGTATCTTTGTGCCGATCATTTCAGCTCATTTCATTTTTAGATTCCTCCTCG
GCTTCTTGATTTTACTTTGTGATTGCTGAGATGCTTGAGT
Found at i:10753113 original size:17 final size:16
Alignment explanation
Indices: 10753091--10753122 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10753081 CTGTTGTGTT
10753091 TTATTATTGGTTATTTA
1 TTATTATT-GTTATTTA
10753108 TTATTATTGTTATTT
1 TTATTATTGTTATTT
10753123 TGTTCATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (16 bp):
TTATTATTGTTATTTA
Found at i:10755537 original size:32 final size:32
Alignment explanation
Indices: 10755496--10755557 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
10755486 TCGTGTGGCT
*
10755496 TCTACAGCTTGCTCCAATGATTTGATTTTCAC
1 TCTACAGCTTACTCCAATGATTTGATTTTCAC
*
10755528 TCTACAGCTTACTCCGATGATTTGATTTTC
1 TCTACAGCTTACTCCAATGATTTGATTTTC
10755558 GCTCCCCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (32 bp):
TCTACAGCTTACTCCAATGATTTGATTTTCAC
Found at i:10759015 original size:2 final size:2
Alignment explanation
Indices: 10759008--10759033 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10758998 TAAAGGGAAA
10759008 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
10759034 TCTCTCTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10759038 original size:2 final size:2
Alignment explanation
Indices: 10759033--10759067 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10759023 CACACACACA
10759033 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
10759068 ATCATTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:10772781 original size:29 final size:28
Alignment explanation
Indices: 10772718--10772781 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 28
10772708 TTGCAATATG
10772718 TATGTTTAAAATGAAATTATAATGATAA
1 TATGTTTAAAATGAAATTATAATGATAA
*
10772746 CACTGTTTAAAATGAAATTATAATGATAA
1 TA-TGTTTAAAATGAAATTATAATGATAA
10772775 TTATGTT
1 -TATGTT
10772782 AATAATTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 1 0.03
29 30 0.94
30 1 0.03
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.41
Consensus pattern (28 bp):
TATGTTTAAAATGAAATTATAATGATAA
Found at i:10773037 original size:102 final size:102
Alignment explanation
Indices: 10772924--10773127 Score: 381
Period size: 102 Copynumber: 2.0 Consensus size: 102
10772914 AAGTCAATTT
*
10772924 TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTCTTTA
1 TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTATTTA
10772989 TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
66 TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
*
10773026 TTAAAATTTATGATTTAAAAAATATTATTTATTATCTAATAGAATTAATGTTTTGAATTTATTTA
1 TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTATTTA
*
10773091 TAGTTATATAGATTCAACAATGCACTGAAGCATTATA
66 TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
10773128 AAATTGTAAA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (102 bp):
TTAAAATTTATGATTTAAAAAATATTATTTATTATATAATAGAATTAATGTTTTGAATTTATTTA
TAGTTATATAGATTCAACAACGCACTGAAGCATTATA
Found at i:10773382 original size:22 final size:23
Alignment explanation
Indices: 10773357--10773399 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
10773347 AGTTTATACC
*
10773357 ATTTGTTTTG-TATTTTTTAATA
1 ATTTGTTTTGTTATGTTTTAATA
*
10773379 ATTTTTTTTGTTATGTTTTAA
1 ATTTGTTTTGTTATGTTTTAA
10773400 AAAAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (23 bp):
ATTTGTTTTGTTATGTTTTAATA
Found at i:10777471 original size:65 final size:65
Alignment explanation
Indices: 10777390--10777515 Score: 207
Period size: 65 Copynumber: 1.9 Consensus size: 65
10777380 GTCTCTTTAC
* * *
10777390 TTAGAAATTGAGTAAATTAGTATCTTTATATTATACTTATTTTGGTGATTTATATAATAATAGAT
1 TTAGAAATTAAGTAAATTAGTATCTTTATATTATACTTATTTGGGTAATTTATATAATAATAGAT
* *
10777455 TTAGAAATTAAGTAAATTAGTCTCTTTGTATTATACTTATTTGGGTAATTTATATAATAAT
1 TTAGAAATTAAGTAAATTAGTATCTTTATATTATACTTATTTGGGTAATTTATATAATAAT
10777516 GGTAAATTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (65 bp):
TTAGAAATTAAGTAAATTAGTATCTTTATATTATACTTATTTGGGTAATTTATATAATAATAGAT
Found at i:10787809 original size:33 final size:33
Alignment explanation
Indices: 10787772--10787895 Score: 230
Period size: 33 Copynumber: 3.8 Consensus size: 33
10787762 CTCTGTTTCA
10787772 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
10787805 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
10787838 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
10787871 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
10787896 CAAGAAGAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.18, C:0.10, G:0.43, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:10792299 original size:50 final size:50
Alignment explanation
Indices: 10792240--10792361 Score: 219
Period size: 50 Copynumber: 2.5 Consensus size: 50
10792230 TGGATAATTA
* *
10792240 GAAT-CCAAAATAACCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
1 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
10792289 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
1 GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
10792339 GAATCCCAAAATGATCTGAATGT
1 GAATCCCAAAATGATCTGAATGT
10792362 AAATATGTGC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
49 4 0.06
50 66 0.94
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (50 bp):
GAATCCCAAAATGATCTGAATGTTGAAAGGACCTGAACCTGAAACAACTT
Found at i:10801979 original size:30 final size:31
Alignment explanation
Indices: 10801943--10802000 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
10801933 TGTAATCAAG
10801943 GAACCCTAAGTTATCTAA-TTTTTATTCCTT
1 GAACCCTAAGTTATCTAATTTTTTATTCCTT
10801973 GAACCCTAAGTTATCTAATTTTTTATTC
1 GAACCCTAAGTTATCTAATTTTTTATTC
10802001 TTTCTCAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.47
Consensus pattern (31 bp):
GAACCCTAAGTTATCTAATTTTTTATTCCTT
Found at i:10811165 original size:46 final size:46
Alignment explanation
Indices: 10811098--10811266 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
10811088 AACCAGCCCC
*
10811098 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
10811144 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
10811192 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
10811237 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
10811267 TGGATGCTCA
Statistics
Matches: 105, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.54
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:10811215 original size:93 final size:93
Alignment explanation
Indices: 10811103--10811273 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
10811093 GCCCCTAAGT
* *
10811103 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10811168 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
10811196 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10811261 CGAGTTTGGATGC
66 CGAGTTCGGATGC
10811274 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:10811726 original size:30 final size:30
Alignment explanation
Indices: 10811692--10811751 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10811682 CCTTAATACG
10811692 AACTTTGGAAAAATTACTA-TTTTGCCCCTA
1 AACTTTGGAAAAATTAC-ACTTTTGCCCCTA
* * *
10811722 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
10811752 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:10814969 original size:19 final size:18
Alignment explanation
Indices: 10814933--10814993 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 18
10814923 AGTTGACTAT
*
10814933 ATAAAAAAT-TTTAATAA
1 ATAAAAAATATTAAATAA
10814950 ATAAAAAATATTAAAT--
1 ATAAAAAATATTAAATAA
10814966 -TAAAATAATA-TAAATAA
1 ATAAAA-AATATTAAATAA
10814983 ATTAAAAAATA
1 A-TAAAAAATA
10814994 AAAAATGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 10 0.27
16 4 0.11
17 9 0.24
18 9 0.24
19 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAAAATATTAAATAA
Found at i:10814983 original size:14 final size:14
Alignment explanation
Indices: 10814946--10814996 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
10814936 AAAAATTTTA
10814946 ATAAATAAAA-AAT
1 ATAAATAAAATAAT
10814959 ATTAAATTAAAATAAT
1 A-TAAA-TAAAATAAT
*
10814975 ATAAATAAATTAA-
1 ATAAATAAAATAAT
10814988 A-AAATAAAA
1 ATAAATAAAA
10814997 AATGATATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 7 0.21
13 2 0.06
14 11 0.33
15 9 0.27
16 4 0.12
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAAATAAAATAAT
Found at i:10814999 original size:19 final size:19
Alignment explanation
Indices: 10814948--10814997 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
10814938 AAATTTTAAT
10814948 AAATAA-AAAATATTAAATTA
1 AAATAATAAAA-A-TAAATTA
*
10814968 AAATAATATAAATAAATTA
1 AAATAATAAAAATAAATTA
10814987 AAA-AATAAAAA
1 AAATAATAAAAA
10814998 ATGATATGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 7 0.26
19 10 0.37
20 7 0.26
21 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AAATAATAAAAATAAATTA
Found at i:10819922 original size:33 final size:35
Alignment explanation
Indices: 10819880--10819944 Score: 107
Period size: 33 Copynumber: 1.9 Consensus size: 35
10819870 TATATAACGT
*
10819880 TTTACACTTTAATAAT-CC-TTTTTTTAATATGAA
1 TTTACACTTTAACAATCCCTTTTTTTTAATATGAA
10819913 TTTACACTTTAACAATCCCTTTTTTTTAATAT
1 TTTACACTTTAACAATCCCTTTTTTTTAATAT
10819945 AAGATTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 15 0.52
34 2 0.07
35 12 0.41
ACGTcount: A:0.31, C:0.15, G:0.02, T:0.52
Consensus pattern (35 bp):
TTTACACTTTAACAATCCCTTTTTTTTAATATGAA
Found at i:10824599 original size:14 final size:14
Alignment explanation
Indices: 10824580--10824608 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10824570 AAACACCACA
10824580 ACGAACCAATTAAG
1 ACGAACCAATTAAG
10824594 ACGAACCAATTAAG
1 ACGAACCAATTAAG
10824608 A
1 A
10824609 TTTTAGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACGAACCAATTAAG
Found at i:10827921 original size:16 final size:17
Alignment explanation
Indices: 10827900--10827932 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
10827890 ACTCATTCTA
*
10827900 TATATAATAAT-TTTAT
1 TATATAACAATATTTAT
10827916 TATATAACAATATTTAT
1 TATATAACAATATTTAT
10827933 ATAACATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATAACAATATTTAT
Found at i:10827935 original size:16 final size:15
Alignment explanation
Indices: 10827898--10827944 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
10827888 TAACTCATTC
*
10827898 TATATATAATAATTT
1 TATATATAACAATTT
*
10827913 TATTATATAACAATAT
1 TA-TATATAACAATTT
*
10827929 T-TATATAACATTTT
1 TATATATAACAATTT
10827943 TA
1 TA
10827945 AACGTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.46
15 2 0.08
16 12 0.46
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATATAACAATTT
Found at i:10828238 original size:4 final size:4
Alignment explanation
Indices: 10828229--10828256 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
10828219 AAGTTTTATT
10828229 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
10828257 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:10839568 original size:4 final size:4
Alignment explanation
Indices: 10839561--10839596 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
10839551 AGCATGCATG
* *
10839561 CATA CATA CATA CATT CATA CACA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA
10839597 TGCATCTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:10842793 original size:5 final size:6
Alignment explanation
Indices: 10842759--10842792 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
10842749 GGAAGTAAAG
10842759 AAAGTAA AAAGAAA AAAGAA AAAGAA AAAGAA AA
1 AAAG-AA AAAG-AA AAAGAA AAAGAA AAAGAA AA
10842793 GGCAAAGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:10844105 original size:3 final size:3
Alignment explanation
Indices: 10844099--10844152 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
10844089 AAAGTAGTAG
10844099 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
10844147 TGA TGA
1 TGA TGA
10844153 AACCAGACCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:10855568 original size:18 final size:18
Alignment explanation
Indices: 10855547--10855612 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 18
10855537 AATCCGCATA
10855547 TATTATTAAATTTTATAT
1 TATTATTAAATTTTATAT
* *
10855565 TATT-TTTAATTTT-TAA
1 TATTATTAAATTTTATAT
*
10855581 T-TTATT-AATTTTTTAT
1 TATTATTAAATTTTATAT
**
10855597 TAAGATTAAATTTTAT
1 TATTATTAAATTTTAT
10855613 TAATTTTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
15 8 0.21
16 8 0.21
17 11 0.29
18 11 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTATTAAATTTTATAT
Found at i:10860182 original size:18 final size:18
Alignment explanation
Indices: 10860161--10860195 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10860151 GTGTTTTTTA
10860161 TTTTTAAAATTTTTTAAT
1 TTTTTAAAATTTTTTAAT
* *
10860179 TTTTTATACTTTTTTAA
1 TTTTTAAAATTTTTTAA
10860196 AGACATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTAAAATTTTTTAAT
Found at i:10862191 original size:18 final size:18
Alignment explanation
Indices: 10862170--10862292 Score: 174
Period size: 18 Copynumber: 6.8 Consensus size: 18
10862160 CGTTTACGAT
10862170 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
* **
10862188 ACTATTTACGTATACGAT
1 ACTATTCACGTATACGGC
10862206 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
*
10862224 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
* *
10862242 ACTATTTACGTATACGAC
1 ACTATTCACGTATACGGC
*
10862260 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
10862278 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
10862293 AGTAGTTGGG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 91 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:10862211 original size:36 final size:36
Alignment explanation
Indices: 10862164--10862292 Score: 204
Period size: 36 Copynumber: 3.6 Consensus size: 36
10862154 TACGACCGTT
*
10862164 TACGATACTATTCACGTATACGGCACTATTTACGTA
1 TACGATACTATTCACGTATACGGCACTATTCACGTA
10862200 TACGATACTATTCACGTATACGGCACTATTCACGTA
1 TACGATACTATTCACGTATACGGCACTATTCACGTA
* * *
10862236 TACGGTACTATTTACGTATACGACACTATTCACGTA
1 TACGATACTATTCACGTATACGGCACTATTCACGTA
* *
10862272 TACGGTACTGTTCACGTATAC
1 TACGATACTATTCACGTATAC
10862293 AGTAGTTGGG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 87 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (36 bp):
TACGATACTATTCACGTATACGGCACTATTCACGTA
Found at i:10862252 original size:54 final size:54
Alignment explanation
Indices: 10862170--10862292 Score: 210
Period size: 54 Copynumber: 2.3 Consensus size: 54
10862160 CGTTTACGAT
*
10862170 ACTATTCACGTATACGGCACTATTTACGTATACGATACTATTCACGTATACGGC
1 ACTATTCACGTATACGGCACTATTTACGTATACGACACTATTCACGTATACGGC
* *
10862224 ACTATTCACGTATACGGTACTATTTACGTATACGACACTATTCACGTATACGGT
1 ACTATTCACGTATACGGCACTATTTACGTATACGACACTATTCACGTATACGGC
*
10862278 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
10862293 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (54 bp):
ACTATTCACGTATACGGCACTATTTACGTATACGACACTATTCACGTATACGGC
Found at i:10867034 original size:16 final size:16
Alignment explanation
Indices: 10867013--10867048 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10867003 GAAATACCGT
*
10867013 TTGAATTTAAATTCTC
1 TTGAATTTAAATTATC
*
10867029 TTGAATTTGAATTATC
1 TTGAATTTAAATTATC
10867045 TTGA
1 TTGA
10867049 TAATTCAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.50
Consensus pattern (16 bp):
TTGAATTTAAATTATC
Found at i:10868375 original size:17 final size:16
Alignment explanation
Indices: 10868345--10868382 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
10868335 ATTTAAAAAT
10868345 TATTA-AAAATAATTA
1 TATTATAAAATAATTA
*
10868360 TTTTATAAAATAAATTA
1 TATTATAAAAT-AATTA
10868377 TATTAT
1 TATTAT
10868383 TATAAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 4 0.21
16 5 0.26
17 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTATAAAATAATTA
Found at i:10872186 original size:23 final size:24
Alignment explanation
Indices: 10872125--10872186 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 24
10872115 ATTTATTTGT
*
10872125 ATAATATATCACTTTAAAAATTTTTAA
1 ATAATATAT-AC-TTAAAAA-TATTAA
10872152 ATAAT-T-TA-TTAAAAA-ATTAA
1 ATAATATATACTTAAAAATATTAA
10872172 ATAATATATACTTAA
1 ATAATATATACTTAA
10872187 TATAATTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
20 9 0.29
21 1 0.03
22 9 0.29
23 4 0.13
24 1 0.03
25 1 0.03
26 1 0.03
27 5 0.16
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (24 bp):
ATAATATATACTTAAAAATATTAA
Found at i:10884962 original size:6 final size:6
Alignment explanation
Indices: 10884951--10884988 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
10884941 AGCCTATGTG
10884951 TCACTC TCACTC TCACTC TCACTC TCACTC TCACTC TC
1 TCACTC TCACTC TCACTC TCACTC TCACTC TCACTC TC
10884989 GCTCGCGTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.50, G:0.00, T:0.34
Consensus pattern (6 bp):
TCACTC
Found at i:10895069 original size:18 final size:16
Alignment explanation
Indices: 10895032--10895076 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
10895022 TGACATCAAC
*
10895032 TTAAATATTTTTTCCT
1 TTAAATATTTTTTCCA
10895048 TTAAATATTTCATTTCCA
1 TTAAATATTT--TTTCCA
10895066 TTAAA-ATTTTT
1 TTAAATATTTTT
10895077 ATTAAATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 2 0.08
16 10 0.38
17 4 0.15
18 10 0.38
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAAATATTTTTTCCA
Found at i:10900686 original size:19 final size:21
Alignment explanation
Indices: 10900649--10900688 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
10900639 TATTTAAATA
*
10900649 AAATTATTCATATTTTTTTAT
1 AAATTATTCATATTATTTTAT
10900670 AAATT-TTC-TATTATTTTAT
1 AAATTATTCATATTATTTTAT
10900689 TTTTGTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 3 0.17
21 5 0.28
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
AAATTATTCATATTATTTTAT
Found at i:10916672 original size:18 final size:19
Alignment explanation
Indices: 10916631--10916671 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
10916621 TATGTATGAG
*
10916631 TTTTTAGTTTAATTAGTCT
1 TTTTTAATTTAATTAGTCT
*
10916650 GTTTTAATTT-ATTAGT-T
1 TTTTTAATTTAATTAGTCT
10916667 TTTTT
1 TTTTT
10916672 TTTGTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
17 5 0.26
18 6 0.32
19 8 0.42
ACGTcount: A:0.20, C:0.02, G:0.10, T:0.68
Consensus pattern (19 bp):
TTTTTAATTTAATTAGTCT
Found at i:10919133 original size:21 final size:21
Alignment explanation
Indices: 10919109--10919151 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
10919099 ATTCCCCTTC
10919109 ATACAAGGATTCTAATCCTAT
1 ATACAAGGATTCTAATCCTAT
10919130 ATACAAGGATTCTAATCCTAT
1 ATACAAGGATTCTAATCCTAT
10919151 A
1 A
10919152 CTATGTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (21 bp):
ATACAAGGATTCTAATCCTAT
Found at i:10920220 original size:14 final size:16
Alignment explanation
Indices: 10920201--10920236 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
10920191 ACTTTAATTC
10920201 TTAAATAAA-A-ATAA
1 TTAAATAAATATATAA
10920215 TTAAATAAATATATAA
1 TTAAATAAATATATAA
10920231 TTAAAT
1 TTAAAT
10920237 CTTAGTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 10 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TTAAATAAATATATAA
Found at i:10923079 original size:27 final size:27
Alignment explanation
Indices: 10923041--10923095 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
10923031 TTTGGATAAG
10923041 AAAGAATTTCAGTGCTGAAGAAGCGCC
1 AAAGAATTTCAGTGCTGAAGAAGCGCC
10923068 AAAGAATTTCAGTGCTGAAGAAGCGCC
1 AAAGAATTTCAGTGCTGAAGAAGCGCC
10923095 A
1 A
10923096 TCCTTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (27 bp):
AAAGAATTTCAGTGCTGAAGAAGCGCC
Found at i:10923580 original size:55 final size:55
Alignment explanation
Indices: 10923471--10923590 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 55
10923461 TCATTTCAGC
* * *
10923471 AAGTAATATTTTAACATAATAACTAATTTAAATATATAAACAATCGAATTAAAAG
1 AAGTAATATTTTAACATAATAACTAATTTAAACATAAAAACAATCGAATCAAAAG
* * * * *
10923526 GAGTAATATTTTAACATGATAATTGATTTAAACATAAAAACAATTG-ATCCAAAAG
1 AAGTAATATTTTAACATAATAACTAATTTAAACATAAAAACAATCGAAT-CAAAAG
10923581 AAGTAATATT
1 AAGTAATATT
10923591 CCAGCACAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 2 0.04
55 53 0.96
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.33
Consensus pattern (55 bp):
AAGTAATATTTTAACATAATAACTAATTTAAACATAAAAACAATCGAATCAAAAG
Found at i:10942318 original size:13 final size:13
Alignment explanation
Indices: 10942300--10942324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10942290 TATTATAGGA
10942300 AATAAATAAAATG
1 AATAAATAAAATG
10942313 AATAAATAAAAT
1 AATAAATAAAAT
10942325 ATACATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AATAAATAAAATG
Found at i:10942422 original size:28 final size:27
Alignment explanation
Indices: 10942379--10942433 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
10942369 TTAATTACTT
10942379 TTTATTTAAGTAAAAAGATATTTATTA
1 TTTATTTAAGTAAAAAGATATTTATTA
*
10942406 TTTATTATAAGTTAAAAGATATTTATTA
1 TTTATT-TAAGTAAAAAGATATTTATTA
10942434 ATTAAATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (27 bp):
TTTATTTAAGTAAAAAGATATTTATTA
Found at i:10943300 original size:17 final size:18
Alignment explanation
Indices: 10943278--10943313 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10943268 TAAATGAGTT
10943278 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
10943295 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
10943313 A
1 A
10943314 GAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:10945082 original size:20 final size:22
Alignment explanation
Indices: 10945042--10945088 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
10945032 AGTGCAATTG
10945042 TTATTTTGTTAACACTTTAAAA
1 TTATTTTGTTAACACTTTAAAA
*
10945064 TTATTTTGTTAA-A-TTTAAAT
1 TTATTTTGTTAACACTTTAAAA
10945084 TTATT
1 TTATT
10945089 ACAATGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.46
21 1 0.04
22 12 0.50
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (22 bp):
TTATTTTGTTAACACTTTAAAA
Found at i:10948581 original size:19 final size:17
Alignment explanation
Indices: 10948537--10948587 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 17
10948527 TGTTTTGAAA
10948537 TTAAAAATATATAAAAAT
1 TTAAAAA-ATATAAAAAT
10948555 TT--AAAATATAAAAAT
1 TTAAAAAATATAAAAAT
10948570 TAATAAAAAATATAAAAA
1 T--TAAAAAATATAAAAA
10948588 GGTTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 11 0.38
16 3 0.10
17 1 0.03
18 2 0.07
19 12 0.41
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAAAAAATATAAAAAT
Found at i:10948701 original size:20 final size:20
Alignment explanation
Indices: 10948676--10948713 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10948666 GCACTTTTAG
*
10948676 TTCTTTTATATATTTATATA
1 TTCTTTTATAAATTTATATA
10948696 TTCTTTTATAAATTTATA
1 TTCTTTTATAAATTTATA
10948714 ATTTTTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
TTCTTTTATAAATTTATATA
Found at i:10962748 original size:33 final size:31
Alignment explanation
Indices: 10962692--10962790 Score: 85
Period size: 33 Copynumber: 3.0 Consensus size: 31
10962682 TTTAAGATTT
* *
10962692 TAATTATTAATTAATTTAGTTTAA-AATTAAA
1 TAATTATTAATTAATTAAATTTAATAATT-AA
10962723 TAATTAATTAAATTAATTAAATTTAATAATTAA
1 TAATT-ATT-AATTAATTAAATTTAATAATTAA
* *
10962756 TAA-TATAAATTATATGTAATTTTAATTTAATTAA
1 TAATTATTAATTA-AT-TAAATTTAA--TAATTAA
10962790 T
1 T
10962791 TTGATTAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
30 5 0.09
31 9 0.16
32 12 0.21
33 19 0.33
34 12 0.21
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (31 bp):
TAATTATTAATTAATTAAATTTAATAATTAA
Found at i:10962789 original size:9 final size:9
Alignment explanation
Indices: 10962690--10962798 Score: 50
Period size: 9 Copynumber: 12.0 Consensus size: 9
10962680 ATTTTAAGAT
10962690 TTTAATT-A
1 TTTAATTAA
10962698 -TTAATTAA
1 TTTAATTAA
*
10962706 TTTAGTTTAAA
1 TTTA-ATT-AA
* *
10962717 ATTAAATAA
1 TTTAATTAA
10962726 -TTAATTAA
1 TTTAATTAA
*
10962734 ATTAATTAAA
1 TTTAATT-AA
10962744 TTTAA-TAA
1 TTTAATTAA
10962752 -TTAA-TAA
1 TTTAATTAA
*
10962759 TATAAATTATA
1 T-TTAATTA-A
*
10962770 TGTAATTTTAA
1 TTTAA--TTAA
10962781 TTTAATTAA
1 TTTAATTAA
*
10962790 TTTGATTAA
1 TTTAATTAA
10962799 ATAAATATTA
Statistics
Matches: 78, Mismatches: 11, Indels: 23
0.70 0.10 0.21
Matches are distributed among these distances:
7 13 0.17
8 10 0.13
9 27 0.35
10 13 0.17
11 12 0.15
12 3 0.04
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
TTTAATTAA
Found at i:10971157 original size:3 final size:3
Alignment explanation
Indices: 10971151--10971179 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10971141 TAGTACTCAA
10971151 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
10971180 AGATTTGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10973232 original size:3 final size:3
Alignment explanation
Indices: 10973224--10973256 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
10973214 AAGCATAAAC
10973224 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10973257 CATTGGAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10973394 original size:3 final size:3
Alignment explanation
Indices: 10973380--10973430 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
10973370 ACACTAGTAC
* * * * *
10973380 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10973427 ATA A
1 ATA A
10973431 GGATATTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10975268 original size:132 final size:132
Alignment explanation
Indices: 10975029--10976052 Score: 1681
Period size: 132 Copynumber: 7.8 Consensus size: 132
10975019 CGCCATCGTC
* * * * *
10975029 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAGGATCTGCGTCGTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * ** * * * **
10975094 TTCCAATCGTTATAGGAAGATAGGACCTGTTATCTTTTATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975159 AA
131 AA
* * *
10975161 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * * * * * *
10975226 TTCCAATCATTATAGGAAGATAGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975291 AA
131 AA
* * *
10975293 GATCTGCTTTCTGCGATCTACTTCGCCATCAATATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * *
10975358 TTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975423 AA
131 AA
* *
10975425 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
10975490 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975555 AA
131 AA
* * * *
10975557 GATCTACTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAATATCTGCATCTTTGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
10975622 TTCCTACCAATATAGGAAGATAGTATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975687 AA
131 AA
* *
10975689 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
10975754 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975819 AA
131 AA
10975821 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
10975886 TTTCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
10975951 AA
131 AA
10975953 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
10976018 TTCCTACCAATATAGGAAGATAGGATCTGCT-CCTT
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTT
10976053 TGACCTATAA
Statistics
Matches: 861, Mismatches: 31, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
131 4 0.00
132 857 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (132 bp):
GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:10987995 original size:3 final size:3
Alignment explanation
Indices: 10987987--10988019 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
10987977 AAGCATAAAC
10987987 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10988020 CATTGGAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10988767 original size:16 final size:16
Alignment explanation
Indices: 10988742--10988779 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10988732 CACCGCGTAA
10988742 ATTT-TTTTTTTTATT
1 ATTTATTTTTTTTATT
* *
10988757 TTTTATTTTTTTTGTT
1 ATTTATTTTTTTTATT
10988773 ATTTATT
1 ATTTATT
10988780 CTTGGTCTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (16 bp):
ATTTATTTTTTTTATT
Found at i:10989675 original size:15 final size:16
Alignment explanation
Indices: 10989644--10989681 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
10989634 TAATATTAAA
*
10989644 ATATATACAATGATAT
1 ATATATACAAAGATAT
10989660 ATATATA-AAAGATAT
1 ATATATACAAAGATAT
*
10989675 ATGTATA
1 ATATATA
10989682 TATAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.37
Consensus pattern (16 bp):
ATATATACAAAGATAT
Found at i:10990087 original size:9 final size:9
Alignment explanation
Indices: 10990044--10990097 Score: 63
Period size: 9 Copynumber: 5.8 Consensus size: 9
10990034 ACATAATAAA
10990044 AATATATACT
1 AATA-ATACT
*
10990054 AATACATAAT
1 AATA-ATACT
10990064 AATAATACT
1 AATAATACT
**
10990073 GGTAATACT
1 AATAATACT
10990082 AATAATACT
1 AATAATACT
10990091 AATAATA
1 AATAATA
10990098 TAAAAATAAC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
9 25 0.68
10 12 0.32
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (9 bp):
AATAATACT
Found at i:10990586 original size:11 final size:11
Alignment explanation
Indices: 10990563--10990595 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
10990553 AAAAAAAAGA
10990563 AGAG-AGGGAAG
1 AGAGAAGGG-AG
10990574 AGAGAAGGGAG
1 AGAGAAGGGAG
10990585 AGAGAAGGGAG
1 AGAGAAGGGAG
10990596 GGGAAAGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AGAGAAGGGAG
Found at i:10990707 original size:7 final size:7
Alignment explanation
Indices: 10990697--10990737 Score: 55
Period size: 7 Copynumber: 5.4 Consensus size: 7
10990687 AGGTAAAAAA
10990697 TTTATTT
1 TTTATTT
10990704 TTTATTT
1 TTTATTT
10990711 TTTATTT
1 TTTATTT
10990718 CTATTATTT
1 -T-TTATTT
10990727 ATTTATTT
1 -TTTATTT
10990735 TTT
1 TTT
10990738 GATATATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 17 0.55
8 7 0.23
9 7 0.23
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTATTT
Found at i:10994592 original size:20 final size:20
Alignment explanation
Indices: 10994563--10994604 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10994553 TTGATTCTTC
*
10994563 AAAAATAAAAC-TCACAAAAT
1 AAAAAAAAAACTTCA-AAAAT
10994583 AAAAAAAAAACTTCAAAAAT
1 AAAAAAAAAACTTCAAAAAT
10994603 AA
1 AA
10994605 TATTATTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAAAAAAAACTTCAAAAAT
Found at i:10996578 original size:48 final size:47
Alignment explanation
Indices: 10996496--10996588 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 47
10996486 TTTCTTGGCT
* *
10996496 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGA-TCAACCG
10996544 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATCAAC
10996589 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
47 9 0.22
48 32 0.78
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (47 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATCAACCG
Found at i:11014142 original size:77 final size:75
Alignment explanation
Indices: 11013973--11014221 Score: 321
Period size: 77 Copynumber: 3.3 Consensus size: 75
11013963 CAACCCCTCG
* * ***
11013973 GGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGGATATCGCACTTAGCAA
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGC-A
*
11014037 CC-CC-T--CG
65 CCACCATAACC
11014044 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGCAC
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGCAC
11014109 CACCAATGAACC
66 CACC-AT-AACC
*
11014121 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATCA-CGCACATAGCA
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGAT-ATCGCACTTAGCA
*
11014185 CCACCCATAAATC
65 CCA-CCAT-AACC
*
11014198 GGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
11014222 TTTTATATAC
Statistics
Matches: 159, Mismatches: 10, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
71 31 0.19
72 31 0.19
74 1 0.01
77 93 0.58
78 3 0.02
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.20
Consensus pattern (75 bp):
GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGCAC
CACCATAACC
Found at i:11021217 original size:77 final size:75
Alignment explanation
Indices: 11021048--11021296 Score: 321
Period size: 77 Copynumber: 3.3 Consensus size: 75
11021038 CAACCCCTCG
* * ***
11021048 GGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGGATATCGCACTTAGCAA
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGC-A
*
11021112 CC-CC-T--CG
65 CCACCATAACC
11021119 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGCAC
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGCAC
11021184 CACCAATGAACC
66 CACC-AT-AACC
*
11021196 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATCA-CGCACATAGCA
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGAT-ATCGCACTTAGCA
*
11021260 CCACCCATAAATC
65 CCA-CCAT-AACC
*
11021273 GGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
11021297 TTTTATATAC
Statistics
Matches: 159, Mismatches: 10, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
71 31 0.19
72 31 0.19
74 1 0.01
77 93 0.58
78 3 0.02
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.20
Consensus pattern (75 bp):
GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATATCGCACTTAGCAC
CACCATAACC
Found at i:11023844 original size:101 final size:101
Alignment explanation
Indices: 11023739--11024002 Score: 483
Period size: 101 Copynumber: 2.6 Consensus size: 101
11023729 ACACTGATCA
* * * *
11023739 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTATCACTTGT
11023804 CACTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
66 CACTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
11023840 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTATCACTTGT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTATCACTTGT
11023905 CACTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
66 CACTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
*
11023941 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTGTCACT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTATCACT
11024003 GATCAGAAGT
Statistics
Matches: 158, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 158 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (101 bp):
CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTATCACTTGT
CACTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
Found at i:11023851 original size:50 final size:51
Alignment explanation
Indices: 11023742--11024002 Score: 400
Period size: 51 Copynumber: 5.2 Consensus size: 51
11023732 CTGATCACAT
*
11023742 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCAC
* *
11023793 TTATCACTTGTCACTGATCAGATAAGAGTAGCT-AAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCAC
* * *
11023843 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCAC
* *
11023894 TTATCACTTGTCACTGATCAGATAAGAGTAGCT-AAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCAC
* * *
11023944 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCAC
*
11023995 TTGTCACT
1 TTATCACT
11024003 GATCAGAAGT
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
50 91 0.48
51 100 0.52
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCAC
Found at i:11026105 original size:20 final size:21
Alignment explanation
Indices: 11026071--11026110 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
11026061 TTAAAATAAA
11026071 ATTAAAATATGAAA-TAATTT
1 ATTAAAATATGAAATTAATTT
11026091 ATTAAAATAAT-AAATTAATT
1 ATTAAAAT-ATGAAATTAATT
11026111 AATAAAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
ATTAAAATATGAAATTAATTT
Found at i:11040711 original size:23 final size:22
Alignment explanation
Indices: 11040684--11040745 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 22
11040674 TTATTTAGAA
*
11040684 ATATTTATTTTAATATTTTTTGT
1 ATATTTATTTTTATATTTTTT-T
11040707 ATATTTGATTTATTATATTTTTTT
1 ATATTT-ATTT-TTATATTTTTTT
11040731 A-ATTTATTTTTATAT
1 ATATTTATTTTTATAT
11040746 AAAAAAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 6 0.17
22 4 0.11
23 10 0.28
24 6 0.17
25 10 0.28
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (22 bp):
ATATTTATTTTTATATTTTTTT
Found at i:11041130 original size:5 final size:5
Alignment explanation
Indices: 11041120--11041146 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
11041110 AGTTTTTATA
11041120 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
11041147 AACAAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:11041195 original size:17 final size:18
Alignment explanation
Indices: 11041166--11041205 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
11041156 TAAGTTGTTT
* *
11041166 TATTTTCATAATTTTTAA
1 TATTTTCATAATTATAAA
11041184 TATTTT-ATAATTATAAA
1 TATTTTCATAATTATAAA
11041201 TATTT
1 TATTT
11041206 AATATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTCATAATTATAAA
Found at i:11041772 original size:16 final size:17
Alignment explanation
Indices: 11041747--11041788 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
11041737 TTTTAAATAT
*
11041747 TAAAAAATTAT-AATTA
1 TAAAATATTATAAATTA
11041763 TAAAATATTATCAAATTA
1 TAAAATATTAT-AAATTA
11041781 TGAAAATA
1 T-AAAATA
11041789 AAACAACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 10 0.45
18 6 0.27
19 6 0.27
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAATATTATAAATTA
Found at i:11042065 original size:17 final size:17
Alignment explanation
Indices: 11042032--11042090 Score: 111
Period size: 17 Copynumber: 3.5 Consensus size: 17
11042022 CGCTGTATTG
11042032 AGAGGTGTATT-GGATT
1 AGAGGTGTATTGGGATT
11042048 AGAGGTGTATTGGGATT
1 AGAGGTGTATTGGGATT
11042065 AGAGGTGTATTGGGATT
1 AGAGGTGTATTGGGATT
11042082 AGAGGTGTA
1 AGAGGTGTA
11042091 ATAGCTAATC
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
16 11 0.26
17 31 0.74
ACGTcount: A:0.25, C:0.00, G:0.41, T:0.34
Consensus pattern (17 bp):
AGAGGTGTATTGGGATT
Found at i:11042347 original size:18 final size:17
Alignment explanation
Indices: 11042326--11042360 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11042316 TTATTATTAA
*
11042326 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
11042344 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
11042361 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:11042414 original size:157 final size:155
Alignment explanation
Indices: 11042220--11042527 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 155
11042210 CCCTTAACAT
*
11042220 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* * *
11042285 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAA-ATAATAATTATTAAATATATTATAATTAAAATATATAA
11042350 TTTAATAAAATTCTTAATAATTAGCAG
130 -TTAATAAAATTCTTAATAATTAGCAG
11042377 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
11042442 TAATAAATAATTTAATCATATTTAAAATAATAATTATTAAATATATTATAATTAAAATATATAAT
66 TAATAAATAATTTAATCATATTTAAAATAATAATTATTAAATATATTATAATTAAAATATATAAT
11042507 TAATAAAATTCTTAATAATTA
131 TAATAAAATTCTTAATAATTA
11042528 ATATTCTTAT
Statistics
Matches: 147, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
155 22 0.15
156 36 0.24
157 89 0.61
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (155 bp):
AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAAATAATAATTATTAAATATATTATAATTAAAATATATAAT
TAATAAAATTCTTAATAATTAGCAG
Found at i:11042481 original size:15 final size:16
Alignment explanation
Indices: 11042463--11042515 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
11042453 TTAATCATAT
11042463 TTAAAATA-ATAATTA
1 TTAAAATATATAATTA
* *
11042478 TT-AAATATATTATAA
1 TTAAAATATATAATTA
11042493 TTAAAATATATAATTA
1 TTAAAATATATAATTA
*
11042509 ATAAAAT
1 TTAAAAT
11042516 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 5 0.16
15 9 0.29
16 17 0.55
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAAATATATAATTA
Found at i:11042492 original size:18 final size:16
Alignment explanation
Indices: 11042463--11042503 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
11042453 TTAATCATAT
* *
11042463 TTAAAATA-ATAATTA
1 TTAAAATATATTATAA
11042478 TT-AAATATATTATAA
1 TTAAAATATATTATAA
11042493 TTAAAATATAT
1 TTAAAATATAT
11042504 AATTAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 5 0.23
15 9 0.41
16 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:11042501 original size:16 final size:16
Alignment explanation
Indices: 11042463--11042528 Score: 59
Period size: 16 Copynumber: 4.2 Consensus size: 16
11042453 TTAATCATAT
*
11042463 TTAAAATA-ATAATTA
1 TTAAAATATATAATAA
*
11042478 TT-AAATATATTATAA
1 TTAAAATATATAATAA
11042493 TTAAAATATATAATTAA
1 TTAAAATATATAA-TAA
*
11042510 -TAAAAT-TCTTAATAA
1 TTAAAATAT-ATAATAA
11042525 TTAA
1 TTAA
11042529 TATTCTTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 5 0.12
15 13 0.31
16 21 0.50
17 3 0.07
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAAATATATAATAA
Found at i:11042528 original size:32 final size:30
Alignment explanation
Indices: 11042463--11042528 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 30
11042453 TTAATCATAT
*
11042463 TTAAAATAATAATTATTAAATATATTATAA
1 TTAAAATAATAATTATAAAATATATTATAA
*
11042493 TTAAAATATATAATTAATAAAAT-TCTTAATAA
1 TTAAAATA-ATAATT-ATAAAATATATT-ATAA
11042525 TTAA
1 TTAA
11042529 TATTCTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 8 0.26
31 9 0.29
32 14 0.45
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
TTAAAATAATAATTATAAAATATATTATAA
Found at i:11042591 original size:66 final size:65
Alignment explanation
Indices: 11042520--11042838 Score: 240
Period size: 59 Copynumber: 5.2 Consensus size: 65
11042510 TAAAATTCTT
11042520 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTA
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTA
* ** * * * * *
11042585 ACATAATTATTATT-AAATAT--A-TTA-T--AATTAAAATATATAAT-TTAATAAAAT-T--CT
1 A-ATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-ATAAAATATAAAT
11042639 T-
64 TA
*
11042640 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTA
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTA
* ** * * * * *
11042705 ACATAATTATTATT-AAATAT--A-TTA-T--AATTAAAATATATAAT-TTAATAAAAT-T--CT
1 A-ATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-ATAAAATATAAAT
11042759 T-
64 TA
11042760 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATT
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAT-ATAAA-T
11042823 TGA
64 T-A
11042826 AATAATTAATATT
1 AATAATTAATATT
11042839 AAATATATTT
Statistics
Matches: 189, Mismatches: 34, Indels: 61
0.67 0.12 0.21
Matches are distributed among these distances:
54 22 0.12
55 10 0.05
56 4 0.02
57 2 0.01
58 10 0.05
59 41 0.22
60 4 0.02
61 36 0.19
62 9 0.05
63 2 0.01
64 4 0.02
65 10 0.05
66 35 0.19
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (65 bp):
AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTA
Found at i:11042629 original size:14 final size:15
Alignment explanation
Indices: 11042580--11042631 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
11042570 ATAAAATATA
11042580 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
11042595 TATTAAATATATTAT
1 AATTAAATATATTAT
11042610 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
11042623 AATTTAATA
1 AATTAAATA
11042632 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:11042680 original size:120 final size:120
Alignment explanation
Indices: 11042463--11042858 Score: 692
Period size: 120 Copynumber: 3.3 Consensus size: 120
11042453 TTAATCATAT
* *
11042463 TTAAAATAATAATTATTAAATATATTATAATTAAAATATATAA-TTAATAAAATTCTTAATAATT
1 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
11042527 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
66 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
11042582 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
1 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
*
11042647 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA
66 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
11042702 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
1 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
11042767 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAA
66 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAT-ATAAA
* *
11042821 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAAT
1 -TT-AACATAATTATTATTAAATATATTATAATTAAAAT
11042859 TTATTGTTTA
Statistics
Matches: 267, Mismatches: 6, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
119 48 0.18
120 217 0.81
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
Found at i:11042749 original size:14 final size:15
Alignment explanation
Indices: 11042700--11042751 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
11042690 GTAAAATATA
11042700 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
11042715 TATTAAATATATTAT
1 AATTAAATATATTAT
11042730 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
11042743 AATTTAATA
1 AATTAAATA
11042752 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:11049767 original size:40 final size:40
Alignment explanation
Indices: 11049630--11049769 Score: 239
Period size: 39 Copynumber: 3.5 Consensus size: 40
11049620 TGCTACTTTA
* *
11049630 TTTTATTATTAATTAAAACTACTCCCCCATACTATTTTG-
1 TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGT
*
11049669 TTTTATTATTAATTAAAACTATT-CCCCATACTATTTTGT
1 TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGT
11049708 TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGT
1 TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGT
11049748 TTTTATTATTAATTAAAACCAT
1 TTTTATTATTAATTAAAACCAT
11049770 ACTTTATTTT
Statistics
Matches: 97, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
38 15 0.15
39 44 0.45
40 38 0.39
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (40 bp):
TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGT
Found at i:11050420 original size:22 final size:23
Alignment explanation
Indices: 11050372--11050428 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
11050362 AACCCCTTCT
**
11050372 AATACAATCTCTTCTCTCCCCAA
1 AATACAATCGATTCTCTCCCCAA
*
11050395 AATACAATCGATTCT-TCCTCAA
1 AATACAATCGATTCTCTCCCCAA
*
11050417 AATACCATCGAT
1 AATACAATCGAT
11050429 CCCCCCTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.35, C:0.32, G:0.04, T:0.30
Consensus pattern (23 bp):
AATACAATCGATTCTCTCCCCAA
Found at i:11050897 original size:13 final size:13
Alignment explanation
Indices: 11050879--11050903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11050869 GAGTTTTAAG
11050879 TTCTTCGATCTGC
1 TTCTTCGATCTGC
11050892 TTCTTCGATCTG
1 TTCTTCGATCTG
11050904 TTCCCTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCTTCGATCTGC
Found at i:11050950 original size:44 final size:44
Alignment explanation
Indices: 11050886--11051367 Score: 439
Period size: 44 Copynumber: 11.0 Consensus size: 44
11050876 AAGTTCTTCG
*
11050886 ATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
11050929 ATCTGCTGTCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* *
11050973 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** ** * * * *
11051015 ATGCTGAAATCTTCGATCTGCTTCATTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
11051061 ATCTGCTATCTTCGATCTGTTCCTTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
11051105 ATCTACTGTTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCT-ATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** ** * * * *
11051148 ATGCTGAAATCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
11051194 ATCTGCTATCTTCGATCTGTTCTCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
11051238 ATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
11051280 ATGC-GAAATCTTCGATCTGTTTCACTCTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
11051325 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCA
11051368 TGCTGAAATC
Statistics
Matches: 357, Mismatches: 61, Indels: 41
0.78 0.13 0.09
Matches are distributed among these distances:
42 11 0.03
43 52 0.15
44 217 0.61
45 73 0.20
46 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:11051163 original size:133 final size:132
Alignment explanation
Indices: 11050893--11051367 Score: 740
Period size: 133 Copynumber: 3.6 Consensus size: 132
11050883 TCGATCTGCT
* * * * * * * *
11050893 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTGCTGTCTTC-AACTTGTTCCCTAT
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-TGTTCCCTAT
* * * *
11050956 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTG
65 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
11051021 AAA
130 AAA
* *
11051024 TCTTCGATCTGCTTCATTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCTTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
*
11051089 AGCACAGGGATGCCAAATCTACTGTTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AGCACAGGGATGCCAAATCTGCTG-TTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
11051154 AAA
130 AAA
* *
11051157 TCTTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCTCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
11051222 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC-GA
66 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
11051286 AA
131 AA
* *
11051288 TCTTCGATCTGTTTCACTCTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
11051353 AGCACAGGGATGCCA
66 AGCACAGGGATGCCA
11051368 TGCTGAAATC
Statistics
Matches: 317, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
131 91 0.29
132 99 0.31
133 127 0.40
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
AA
Found at i:11051861 original size:205 final size:205
Alignment explanation
Indices: 11051465--11052455 Score: 1605
Period size: 205 Copynumber: 4.8 Consensus size: 205
11051455 AAATCTATTT
* * * * * * *
11051465 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAAATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
* * * * * *
11051530 GTGAAAGCCAAATCAACTATG-ATTAGATTTGCTCCTTGTAAGCATAAGGATGCAAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
11051594 GGATCCGCTTCAGCAT-AAA-CATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
131 GGATCTGCTTCAG--TGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
11051657 GAAGATGCCAAA
194 GAAGATGCCAAA
*
11051669 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
* *
11051734 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
11051799 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCGTCAAAGTGA
131 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
11051864 AGATGCCAAA
196 AGATGCCAAA
* *
11051874 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCATAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
*
11051939 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
11052004 GGATCTACTTCAGTGAAATCATCTGAAGGCGAGATCTTCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
11052069 AGATGCCAAA
196 AGATGCCAAA
* *
11052079 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
11052144 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
11052209 GGATTTGCTTCAGTGAAATCATCTGAATGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
11052274 AGATGCCAAA
196 AGATGCCAAA
* *
11052284 CTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
*
11052349 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
11052414 GAATCTGCTTCAGT-ATAA-CATCTGAAGGCCAGATCTGTTATG
131 GGATCTGCTTCAGTGA-AATCATCTGAAGGCGAGATCTGCTATG
11052456 CTGCGACCTA
Statistics
Matches: 737, Mismatches: 46, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
203 1 0.00
204 102 0.14
205 634 0.86
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTATCGTAATCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:11066651 original size:14 final size:14
Alignment explanation
Indices: 11066622--11066665 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
11066612 TCATTCTATT
*
11066622 TTATTATATAAATA
1 TTATAATATAAATA
11066636 TTA-AATATACAATA
1 TTATAATATA-AATA
11066650 TTATAATATAAATA
1 TTATAATATAAATA
11066664 TT
1 TT
11066666 TAAAAATCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 5 0.19
14 16 0.59
15 6 0.22
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
TTATAATATAAATA
Found at i:11070732 original size:10 final size:11
Alignment explanation
Indices: 11070713--11070737 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11070703 TTCATTCAAA
11070713 TTTTGTTTTTT
1 TTTTGTTTTTT
11070724 TTTTGTTTTTT
1 TTTTGTTTTTT
11070735 TTT
1 TTT
11070738 ATATATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTGTTTTTT
Found at i:11071941 original size:3 final size:3
Alignment explanation
Indices: 11071933--11071962 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
11071923 ATTCCCACTC
*
11071933 ATA ATA ATA ATA ATA ATA ATA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
11071963 CTTACCTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:11072635 original size:11 final size:11
Alignment explanation
Indices: 11072619--11072644 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11072609 TCTTTCTTTC
11072619 TTTCTCCCCTG
1 TTTCTCCCCTG
11072630 TTTCTCCCCTG
1 TTTCTCCCCTG
11072641 TTTC
1 TTTC
11072645 GTCTCTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:11072714 original size:20 final size:20
Alignment explanation
Indices: 11072680--11072719 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
11072670 TTCTATTCTG
*
11072680 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
11072700 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
11072720 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:11072885 original size:31 final size:28
Alignment explanation
Indices: 11072849--11072916 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
11072839 TTGTCTTTAT
**
11072849 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
11072879 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
11072908 TTAATTTAT
1 TTAATTTAT
11072917 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:11072933 original size:21 final size:20
Alignment explanation
Indices: 11072895--11072933 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
11072885 TAATTTAATA
*
11072895 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
11072915 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
11072934 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:11074724 original size:16 final size:15
Alignment explanation
Indices: 11074703--11074756 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
11074693 GATGTGAATA
11074703 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
11074719 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
11074734 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
11074750 AATAAAA
1 -ATAAAA
11074757 AAAATGTACA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 8 0.23
16 25 0.71
17 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:11074726 original size:24 final size:24
Alignment explanation
Indices: 11074699--11074756 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
11074689 TAATGATGTG
*
11074699 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
11074723 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
11074747 AATAATAAAA
1 AATAATAAAA
11074757 AAAATGTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:11074733 original size:8 final size:8
Alignment explanation
Indices: 11074699--11074756 Score: 64
Period size: 8 Copynumber: 7.2 Consensus size: 8
11074689 TAATGATGTG
*
11074699 AATAATAA
1 AATATTAA
11074707 AATATATAA
1 AATAT-TAA
11074716 AATA-TAA
1 AATATTAA
11074723 AATATTAA
1 AATATTAA
*
11074731 AATATCAA
1 AATATTAA
*
11074739 AATATTAG
1 AATATTAA
*
11074747 AATAATAA
1 AATATTAA
11074755 AA
1 AA
11074757 AAAATGTACA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
7 7 0.17
8 28 0.67
9 7 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (8 bp):
AATATTAA
Found at i:11074960 original size:29 final size:29
Alignment explanation
Indices: 11074920--11074986 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
11074910 TATAGTTAAG
*
11074920 ATATATACATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* *
11074949 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
11074978 ATACATAAA
1 ATATATAAA
11074987 ATAGTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:11074977 original size:25 final size:25
Alignment explanation
Indices: 11074861--11075076 Score: 119
Period size: 25 Copynumber: 8.7 Consensus size: 25
11074851 TAAATACGTG
*
11074861 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAAATATATACATAAT
* * *
11074886 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAAATATATACATAAT
* * *
11074911 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAAATATATACATAAT
* *
11074933 ATAACATGTAAAATATATATATAAATAAT
1 ATAATAT-T-AAA-A-ATATATACATAAT
* *
11074962 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAAATATATACATAAT
* * *
11074987 ATAGTATAAAATATATATATACGTAAT
1 ATAATATTAAA-A-ATATATACATAAT
* * *
11075014 ATAGA-ATT-TAAA-ATATACCT--G
1 ATA-ATATTAAAAATATATACATAAT
*
11075035 AT-ATATTAAAAGA-ATATATATAAT
1 ATAATATTAAAA-ATATATACATAAT
11075059 ATAATATTAAGAAATATA
1 ATAATATTAA-AAATATA
11075077 ATAATAACAA
Statistics
Matches: 143, Mismatches: 30, Indels: 35
0.69 0.14 0.17
Matches are distributed among these distances:
19 1 0.01
20 3 0.02
21 4 0.03
22 22 0.15
23 11 0.08
24 4 0.03
25 53 0.37
26 6 0.04
27 21 0.15
28 1 0.01
29 17 0.12
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAAATATATACATAAT
Found at i:11075080 original size:23 final size:25
Alignment explanation
Indices: 11075037--11075082 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
11075027 TATACCTGAT
11075037 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
11075062 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
11075083 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:11075610 original size:30 final size:30
Alignment explanation
Indices: 11075572--11075716 Score: 218
Period size: 30 Copynumber: 4.8 Consensus size: 30
11075562 TAGGTACAAG
* *
11075572 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
11075602 TCGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* * *
11075632 TGGTGGTGAAAAAGGTGTGGCTAGAGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
11075662 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
11075692 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
11075717 TGAGAAAAGT
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 101 1.00
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.24
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:11075668 original size:60 final size:60
Alignment explanation
Indices: 11075572--11075715 Score: 243
Period size: 60 Copynumber: 2.4 Consensus size: 60
11075562 TAGGTACAAG
* *
11075572 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTCGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGAGGAGTTCGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* *
11075632 TGGTGGTGAAAAAGGTGTGGCTAGAGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGAGGAGTTCGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
11075692 TGGTGGTGGAAAAGGAGTGGCTAG
1 TGGTGGTGGAAAAGGTGTGGCTAG
11075716 TTGAGAAAAG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 78 1.00
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.24
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGAGGAGTTCGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:11076484 original size:14 final size:14
Alignment explanation
Indices: 11076465--11076514 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
11076455 GAGTTGATTT
* *
11076465 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
11076479 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
11076494 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
11076508 TT-AAAAA
1 TTGAAAAA
11076515 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:11076627 original size:73 final size:73
Alignment explanation
Indices: 11076494--11076889 Score: 479
Period size: 73 Copynumber: 5.3 Consensus size: 73
11076484 AAAACAGAAA
* * ** *
11076494 TTGA-AAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
11076558 TGAGTTAATTT
63 TGAGTTAATTT
* *
11076569 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
11076634 GTTGATTTTT
66 GTT-A-ATTT
* * *
11076644 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
11076709 AGTTGATTTTTT
65 AGTT-A--ATTT
* * * ** *
11076721 TTTACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
11076786 GAGTTAATTT
64 GAGTTAATTT
*
11076796 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
11076861 GTTGATTT
66 GTTAATTT
* * *
11076869 TTGAAAAATATAAATTGAAAA
1 TTGACAAACAGAAATTGAAAA
11076890 AACAGAAATT
Statistics
Matches: 279, Mismatches: 35, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
73 90 0.32
74 1 0.00
75 68 0.24
76 69 0.25
77 17 0.06
78 34 0.12
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTT
Found at i:11077028 original size:78 final size:75
Alignment explanation
Indices: 11076906--11077139 Score: 318
Period size: 78 Copynumber: 3.1 Consensus size: 75
11076896 AATTGAAAGG
* *
11076906 CAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA
1 CAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
11076970 TTTTTTTGACAAA
64 -TTTTTTGAAAAA
* *
11076983 CAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 CAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATATGAGTTGA
11077048 TTTTTTGAAAAA
64 TTTTTTGAAAAA
*
11077060 TAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 CAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
11077120 TTTTGAAAAA
66 TTTTGAAAAA
*
11077130 CATAAATTGA
1 CAGAAATTGA
11077140 GCAGAAATTG
Statistics
Matches: 144, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
70 18 0.12
71 32 0.22
74 1 0.01
76 15 0.10
77 27 0.19
78 51 0.35
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (75 bp):
CAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGAAAAA
Found at i:11077067 original size:331 final size:329
Alignment explanation
Indices: 11076604--11077207 Score: 869
Period size: 331 Copynumber: 1.8 Consensus size: 329
11076594 TCAGCGTGTC
* * *
11076604 CCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATAC
1 CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAC
* * **
11076669 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAA
66 CTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAA
*
11076734 ATTGAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
130 ATTGAAAACACCTCAGCATGTGA---G-G-CTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
* * *
11076799 -AC-AA-A-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
190 AACAAATAGCAGAAATTGAAAATACCTCAACGGGTCCCGAGGCTCAACTCACCTCTCGCAATATG
11076860 AGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTC
255 AGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTC
11076925 AGCATGTGAG
320 AGCATGTGAG
*
11076935 CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAAATAC
1 CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAC
*
11077000 CTCAGCGTGTAAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAG
66 CTCAGCGTGT---CCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAG
*
11077063 AAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
128 AAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTG---
** *
11077128 AACATAAATTGAGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAA
190 AAC--AAA-T-AGCAGAAATTGAAAATACCTCAACGGGTCCCGAGGCTCAACTCACCTCTCGCAA
11077193 TATGAGTTGATTTTT
251 TATGAGTTGATTTTT
11077208 TGATGATAAA
Statistics
Matches: 242, Mismatches: 17, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
326 34 0.14
327 1 0.00
328 1 0.00
330 2 0.01
331 106 0.44
333 34 0.14
334 2 0.01
336 1 0.00
337 61 0.25
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (329 bp):
CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATAC
CTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA
TTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAACAAA
TAGCAGAAATTGAAAATACCTCAACGGGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCATG
TGAG
Found at i:11077106 original size:71 final size:71
Alignment explanation
Indices: 11076907--11077303 Score: 318
Period size: 71 Copynumber: 5.2 Consensus size: 71
11076897 ATTGAAAGGC
* *
11076907 AGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCATGTGA---G-G-CTCAACTCACCTCTCGCAATATGAGTTGA-T
* *
11076972 TTTTTGACAAAC
60 TTTTTGAAAAAT
*
11076984 AGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAATTG-AAAATACCTCAGCATGT--G---AGGCTCAACTCACCTCTCGCAATATGAGTTGAT
11077049 TTTTTGAAAAAT
60 TTTTTGAAAAAT
*
11077061 AGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
1 AGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
11077125 AAAAACATAAATT
66 ----A-A-AAA-T
** * *
11077138 GAGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 ----AGAAATTGAAAATACCTC-A-GCAT-GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
11077203 TTTTTTG-ATGAT
59 TTTTTTGAAAAAT
* * *
11077215 --AAATTGAAAATACCTCAATGTGACT-TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTT
1 AGAAATTGAAAATACCTC-A-G-CA-TGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
11077277 TTTGAATTAAAAC
62 TTTG-A--AAAAT
11077290 AGAAATTGAAAATA
1 AGAAATTGAAAATA
11077304 GAAATGGAAA
Statistics
Matches: 271, Mismatches: 20, Indels: 58
0.78 0.06 0.17
Matches are distributed among these distances:
70 6 0.02
71 91 0.34
72 1 0.00
73 1 0.00
74 2 0.01
75 3 0.01
76 18 0.07
77 40 0.15
78 45 0.17
79 2 0.01
80 2 0.01
81 17 0.06
82 1 0.00
83 3 0.01
84 33 0.12
85 6 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (71 bp):
AGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAAT
Found at i:11077244 original size:155 final size:156
Alignment explanation
Indices: 11077020--11077372 Score: 450
Period size: 155 Copynumber: 2.2 Consensus size: 156
11077010 AAGCCAAGGC
11077020 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA-AAATTGAAAACACCTCAGCATG
* * *
11077085 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-A-AAAACATAAATTG-AGCAGAA
65 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGAA
* * *
11077146 ATTGAAAATACCTCAACGGGTCTTGAGGT
130 ATGGAAAACACCTC-A-GCGTCTTGAGGT
** * *
11077175 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGAT-AAATTGAAAATACCTCAATGTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTC-A-G-CA
*
11077238 CT-TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAA
63 -TGTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAA-TAAAACAGAAATTG-AAA
*
11077302 TAGAAATGGAAAACACCTCAGCGTCTTGAGGT
125 CAGAAATGGAAAACACCTCAGCGTCTTGAGGT
*
11077334 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
11077373 CACATAAATT
Statistics
Matches: 172, Mismatches: 14, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
152 15 0.09
153 1 0.01
154 4 0.02
155 68 0.40
156 7 0.04
157 1 0.01
159 50 0.29
160 8 0.05
161 18 0.10
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (156 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTCAGCATGT
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGAAA
TGGAAAACACCTCAGCGTCTTGAGGT
Found at i:11077403 original size:88 final size:87
Alignment explanation
Indices: 11077238--11077404 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
11077228 CTCAATGTGA
* * *
11077238 CTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAAT
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAA-TAAAACAGAAATTAAAAAA
*
11077303 AGAAATGGAAAACACCTCAGCGT
65 AGAAATGAAAAACACCTCAGCGT
* * *
11077326 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-A-AACACATAAATTAAAAAA
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGA-TTTTTTGAATAAAACAGAAATT--AAAA
*
11077389 AAAGAAATTAAAAACA
63 AAAGAAATGAAAAACA
11077405 GAATTTGAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
86 10 0.15
88 51 0.75
89 7 0.10
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (87 bp):
CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAATAAAACAGAAATTAAAAAAA
GAAATGAAAAACACCTCAGCGT
Found at i:11077526 original size:75 final size:74
Alignment explanation
Indices: 11077396--11077714 Score: 331
Period size: 77 Copynumber: 4.3 Consensus size: 74
11077386 AAAAAAGAAA
* * ** * * *
11077396 TTAAAAACAGAATTTGAAAGGACCTCGACGTGTGGCCCGAGACTGAACTCACCTCTCGCAATATG
1 TTAAAAACAAAAATTGAAAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
*
11077461 AGTTGATTCTT
64 AGTTGATTTTT
*
11077472 TTAAAAAGCAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGA
1 TTAAAAA-CAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
11077537 GTTGATTTTT
65 GTTGATTTTT
* * * *
11077547 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
11077611 TGAGTTGA-TTTT
62 TGAGTTGATTTTT
* * * * ** *
11077623 TGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
11077686 TTGATTTTT
66 TTGATTTTT
** * *
11077695 TTTGAAACATAAATTAAAAA
1 TTAAAAACAAAAATTGAAAA
11077715 AACGAAAATT
Statistics
Matches: 207, Mismatches: 29, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
71 37 0.18
72 18 0.09
73 13 0.06
74 4 0.02
75 42 0.20
76 14 0.07
77 79 0.38
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:11077751 original size:160 final size:163
Alignment explanation
Indices: 11077563--11077941 Score: 472
Period size: 151 Copynumber: 2.4 Consensus size: 163
11077553 AAAATAGAAT
* *
11077563 TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAC
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
** ** *
11077627 AAACAAAAATTGAAATTACCTCA-GCGT-CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
66 AAACAAAAATTGAAAACACCTCAGGCGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
11077690 TTTTTT-TTGAAACATAAATTAAAAAAACGAAAA
131 TTTTTTGATG-AACAGAAATTAAAAAAACGAAAA
11077723 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
* *
11077788 AAAACATAAATTGAAAACACCTCAGTGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
65 AAAACAAAAATTGAAAACACCTCAG-GCGT-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
11077853 TGATTTTTTGATGAACAGAAATT---AAAAC-----
128 TGATTTTTTGATGAACAGAAATTAAAAAAACGAAAA
*
11077881 -------TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
11077939 AAA
65 AAA
11077942 TCAGAAATAA
Statistics
Matches: 200, Mismatches: 12, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
151 60 0.30
160 55 0.28
162 27 0.14
163 5 0.03
164 3 0.01
166 48 0.24
167 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (163 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AAACAAAAATTGAAAACACCTCAGGCGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTGATGAACAGAAATTAAAAAAACGAAAA
Found at i:11077781 original size:89 final size:87
Alignment explanation
Indices: 11077627--11077804 Score: 268
Period size: 89 Copynumber: 2.0 Consensus size: 87
11077617 GATTTTTGAC
* * *
11077627 AAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
1 AAACAAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
11077692 TTTTTTG-AAACATAAATTAAAA
65 TTTTTTGAAAACATAAATTAAAA
*
11077714 AAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAAAAATTGAAAATACCTCAGC--GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
11077779 TTTTTTTGAAAAACATAAATTGAAA
64 TTTTTTTG-AAAACATAAATTAAAA
11077804 A
1 A
11077805 CACCTCAGTG
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
87 23 0.28
88 8 0.10
89 36 0.44
90 15 0.18
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (87 bp):
AAACAAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGAAAACATAAATTAAAA
Found at i:11077935 original size:74 final size:75
Alignment explanation
Indices: 11077712--11077949 Score: 340
Period size: 75 Copynumber: 3.2 Consensus size: 75
11077702 CATAAATTAA
11077712 AAAAAC-GAAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAG-AAATTGAAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
11077775 TTGATTTTTTTG
65 TTGA-TTTTTTG
* * *
11077787 AAAAACATAAATTGAAAAC-ACCTCAGTGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGA
11077851 GTTGATTTTTTG
64 GTTGATTTTTTG
** *
11077863 ATGAACAGAAATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
11077927 TGATTTTTTTG
66 TGA-TTTTTTG
*
11077938 AAAATCAGAAAT
1 AAAAACAGAAAT
11077950 AAAAACATCA
Statistics
Matches: 145, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
74 35 0.24
75 48 0.33
76 27 0.19
77 35 0.24
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTG
Found at i:11080556 original size:53 final size:53
Alignment explanation
Indices: 11080479--11080606 Score: 177
Period size: 53 Copynumber: 2.4 Consensus size: 53
11080469 CACATATCAT
* * *
11080479 ACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTAC
* * * *
11080532 ACTGATGCCATAGCCTAGCTATGGTCTTATACGGAGTCACATTATCACATTGC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
11080585 ACCGATGCCATAGCCCAGCTAT
1 ACCGATGCCATAGCCCAGCTAT
11080607 TATCTTAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
52 1 0.02
53 64 0.98
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
Found at i:11080613 original size:53 final size:53
Alignment explanation
Indices: 11080479--11080633 Score: 172
Period size: 53 Copynumber: 2.9 Consensus size: 53
11080469 CACATATCAT
* * * * *
11080479 ACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGATGCCATAGCCCAG-CTATGATCTTATACGGAGTCACATTATCACATTAC
* * * *
11080532 ACTGATGCCATAGCCTAGCTATGGTCTTATACGGAGTCACATTATCACATTGC
1 ACCGATGCCATAGCCCAGCTATGATCTTATACGGAGTCACATTATCACATTAC
* *
11080585 ACCGATGCCATAGCCCAGCTATTATCTTAAACGG-G-CACACTTATCACAT
1 ACCGATGCCATAGCCCAGCTATGATCTTATACGGAGTCACA-TTATCACAT
11080634 ATTTTTCGTC
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
51 4 0.05
52 11 0.12
53 73 0.83
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGCTATGATCTTATACGGAGTCACATTATCACATTAC
Done.