Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 297 of 318
Found at i:94636999 original size:134 final size:134
Alignment explanation
Indices: 94636662--94637233 Score: 993
Period size: 134 Copynumber: 4.3 Consensus size: 134
94636652 GGTGGTGAAG
94636662 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
* * * *
94636727 TTTACCTTCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTATCT-CCTGTATTTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
94636791 GGAA
131 GGAA
94636795 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
94636860 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
94636925 GGAA
131 GGAA
* * *
94636929 TAGATTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
* *
94636994 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
94637059 GGAA
131 GGAA
* *
94637063 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
*
94637128 TTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCA
66 TTTACCTCCC--TGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCA
94637193 GTGGAA
129 GTGGAA
* *
94637199 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
94637234 GGTAGGAAGT
Statistics
Matches: 422, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
133 111 0.26
134 220 0.52
136 91 0.22
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
GGAA
Found at i:94637140 original size:46 final size:46
Alignment explanation
Indices: 94636942--94637140 Score: 113
Period size: 46 Copynumber: 4.4 Consensus size: 46
94636932 ATTGAATATT
* * * *
94636942 GCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATG
1 GCAGATTTTACCTCCCTGTATTAGGCAGCGAAGCAGATCGAAGATG
* * * * * * **
94636988 GCAGATTTTACCTCCCTG-ACTA--CAGTGGAGTACATTGAAGCCG
1 GCAGATTTTACCTCCCTGTATTAGGCAGCGAAGCAGATCGAAGATG
** * * * * * * * *
94637031 ATA-ACTCTATCTCACTGTATCT-GGCAGTGGAA-TAGATTGAAGATT
1 GCAGATTTTACCTCCCTGTAT-TAGGCAG-CGAAGCAGATCGAAGATG
* * *
94637076 GCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATG
1 GCAGATTTTACCTCCCTGTATTAGGCAGCGAAGCAGATCGAAGATG
94637122 GCAGATTTTACCTCCCTGT
1 GCAGATTTTACCTCCCTGT
94637141 GACTACAGTG
Statistics
Matches: 104, Mismatches: 41, Indels: 16
0.65 0.25 0.10
Matches are distributed among these distances:
42 10 0.10
43 16 0.15
44 1 0.01
45 19 0.18
46 58 0.56
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (46 bp):
GCAGATTTTACCTCCCTGTATTAGGCAGCGAAGCAGATCGAAGATG
Found at i:94637284 original size:268 final size:266
Alignment explanation
Indices: 94636662--94637270 Score: 911
Period size: 267 Copynumber: 2.3 Consensus size: 266
94636652 GGTGGTGAAG
* * * * * *
94636662 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATTCGGCAGCGAAGCAGATCGAAGA-GACAGAC
* * * * *
94636727 TTTACCTTCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTATCTCCTGTATTTGGCAGTG
65 TCTACCTCCCTGACTACAGTGGAGTACACTGAAGCCGATAACTCTATCTCCTGTATCTGGCAGTG
*
94636792 GAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCA
130 GAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCAAAGATGGCA
94636857 GATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGC
195 GATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGC
94636922 AGTGGAA
260 AGTGGAA
* * * * *
94636929 TAGATTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATTCGGCAGCGAAGCAGATCGAAGA-GACAGAC
* *
94636994 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAGT
65 TCTACCTCCCTGACTACAGTGGAGTACACTGAAGCCGATAACTCTATCTC-CTGTATCTGGCAGT
*
94637059 GGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGC
129 GGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCAAAGATGGC
*
94637124 AGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT
194 AGATTTTACCTCCC--TGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT
94637189 GGCAGTGGAA
257 GGCAGTGGAA
* ** *
94637199 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATT-GGTAG-GAAGTGGATTGAA-A-ACAGACT
1 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATTCGGCAGCGAAGCAGATCGAAGAGACAGACT
*
94637260 CTATCTCCCTG
66 CTACCTCCCTG
94637271 TATTTAGCAG
Statistics
Matches: 317, Mismatches: 22, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
265 14 0.04
267 109 0.34
268 100 0.32
269 4 0.01
270 90 0.28
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (266 bp):
TAGATTGAAGATTGCAGATCCTGCCTTCCTATATTCGGCAGCGAAGCAGATCGAAGAGACAGACT
CTACCTCCCTGACTACAGTGGAGTACACTGAAGCCGATAACTCTATCTCCTGTATCTGGCAGTGG
AATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCAAAGATGGCAG
ATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCA
GTGGAA
Found at i:94637419 original size:43 final size:40
Alignment explanation
Indices: 94637372--94637542 Score: 137
Period size: 40 Copynumber: 4.2 Consensus size: 40
94637362 CTTGGGCAAC
*
94637372 AGTGGAATAGATCGAAGATTACAATCTTATCTCCCTAAGCAGT
1 AGTGGAATAGATCG--CATTA-AATCTTATCTCCCTAAGCAGT
* *
94637415 AGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGT
1 AGTGGAATAGATCGCATTAAATCTTATCTCCCTAAGCAGT
** *** ** * *
94637455 AGTGGAGCAGATAAAACCACAGATCTTATTTCCCTAAGCAAT
1 AGTGGAATAGATCGCATTA-A-ATCTTATCTCCCTAAGCAGT
* * * *
94637497 AGT-GAAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGT
1 AGTGGAA-TAGATCGCATTAAATCTTATCTCCCTAAGCAGT
94637537 AGTGGA
1 AGTGGA
94637543 GCAGACTAAA
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
40 52 0.50
41 10 0.10
42 28 0.27
43 13 0.13
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (40 bp):
AGTGGAATAGATCGCATTAAATCTTATCTCCCTAAGCAGT
Found at i:94637448 original size:40 final size:40
Alignment explanation
Indices: 94637396--94637547 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 40
94637386 AAGATTACAA
* *
94637396 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*** *
94637436 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA-AG
* * *
94637477 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
94637518 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
94637548 CTAAAAACAC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
40 58 0.62
41 4 0.04
42 31 0.33
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:94637490 original size:82 final size:83
Alignment explanation
Indices: 94637394--94637563 Score: 261
Period size: 82 Copynumber: 2.1 Consensus size: 83
94637384 CGAAGATTAC
* * * *
94637394 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
94637459 GAGCAGA-TAAAACCACA
66 GAGCAGACTAAAAACACA
* * *
94637476 GATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
94637541 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
94637559 AATCT
1 AATCT
94637564 CATCCCCATG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 65 0.83
83 13 0.17
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:94637500 original size:42 final size:42
Alignment explanation
Indices: 94637395--94637563 Score: 157
Period size: 40 Copynumber: 4.1 Consensus size: 42
94637385 GAAGATTACA
* *** **
94637395 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
*
94637436 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
* * * *** *
94637477 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
* *
94637518 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TAAAAACACAG
94637560 ATCT
1 ATCT
94637564 CATCCCCATG
Statistics
Matches: 101, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
40 58 0.57
41 8 0.08
42 32 0.32
43 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
Found at i:94637852 original size:37 final size:38
Alignment explanation
Indices: 94637789--94637863 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
94637779 GCTGTAAAGG
* *
94637789 CCCAATTTTGGCCCAACTTAAACCAACCCTAAC-CAAA
1 CCCAATTTTGGCCCAACCTAAACCAACCCAAACACAAA
*
94637826 CCCAA-TTTGGCCCAACCTAATCCCAACCCAAACACAAA
1 CCCAATTTTGGCCCAACCTAA-ACCAACCCAAACACAAA
94637864 AAATAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 14 0.42
37 15 0.45
38 4 0.12
ACGTcount: A:0.39, C:0.40, G:0.05, T:0.16
Consensus pattern (38 bp):
CCCAATTTTGGCCCAACCTAAACCAACCCAAACACAAA
Found at i:94638087 original size:22 final size:23
Alignment explanation
Indices: 94638040--94638088 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
94638030 GGTTTTGGTT
94638040 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGGATTGTTCTTTG
* * *
94638063 TTTTGGAGGAGG-TTTTTTTTTG
1 TTTTGGAGAAGGATTGTTCTTTG
94638085 TTTT
1 TTTT
94638089 TTTGGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.57
Consensus pattern (23 bp):
TTTTGGAGAAGGATTGTTCTTTG
Found at i:94638089 original size:23 final size:24
Alignment explanation
Indices: 94638039--94638089 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
94638029 GGGTTTTGGT
94638039 TTTTTGGAGAAGGATTGTTCTTTG
1 TTTTTGGAGAAGGATTGTTCTTTG
* * *
94638063 -TTTTGGAGGAGG-TTTTTTTTTG
1 TTTTTGGAGAAGGATTGTTCTTTG
94638085 TTTTT
1 TTTTT
94638090 TTGGAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.12, C:0.02, G:0.27, T:0.59
Consensus pattern (24 bp):
TTTTTGGAGAAGGATTGTTCTTTG
Found at i:94638434 original size:3 final size:3
Alignment explanation
Indices: 94638420--94638504 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
94638410 GAGCTTTGTT
* *
94638420 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
94638464 TT- TCTCA TGTA TATA TTA TTT TTA -TA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
94638505 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
2 8 0.12
3 50 0.76
4 6 0.09
5 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:94638455 original size:24 final size:23
Alignment explanation
Indices: 94638423--94638504 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
94638413 CTTTGTTTTA
*
94638423 TTATTTTATTATTTTTACTATTAT
1 TTATATTATTATTTTTA-TATTAT
* *
94638447 TTATATTATTATTATTATTTCTCAT
1 TTATATTATTATTTTTATAT-T-AT
*
94638472 GTATA-TATTATTTTTATATTATT
1 TTATATTATTATTTTTATATTA-T
94638495 ATTATATTAT
1 -TTATATTAT
94638505 ATATGCCCTC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
22 1 0.02
23 4 0.09
24 32 0.70
25 9 0.20
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (23 bp):
TTATATTATTATTTTTATATTAT
Found at i:94638491 original size:11 final size:11
Alignment explanation
Indices: 94638420--94638504 Score: 64
Period size: 11 Copynumber: 7.4 Consensus size: 11
94638410 GAGCTTTGTT
94638420 TTATTATTT-TA
1 TTATT-TTTATA
94638431 TTATTTTTACTA
1 TTATTTTTA-TA
*
94638443 TTATTTATATTA
1 TTATTTTTA-TA
* *
94638455 TTATTATTATT
1 TTATTTTTATA
* *
94638466 TCTCATGTATATA
1 T-T-ATTTTTATA
94638479 TTATTTTTATA
1 TTATTTTTATA
*
94638490 TTATTATTATA
1 TTATTTTTATA
94638501 TTAT
1 TTAT
94638505 ATATGCCCTC
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
10 3 0.05
11 28 0.48
12 21 0.36
13 6 0.10
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:94638746 original size:18 final size:19
Alignment explanation
Indices: 94638710--94638766 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
94638700 ACTATTACTA
*
94638710 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
94638730 TTATGTATA-TATATA-TT
1 TTATATATAGTATATATTT
94638747 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
94638765 TT
1 TT
94638767 TATTACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 12 0.38
18 12 0.38
19 2 0.06
20 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:94638868 original size:12 final size:12
Alignment explanation
Indices: 94638851--94638880 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
94638841 GTATTTCTAT
94638851 TATATACATATA
1 TATATACATATA
*
94638863 TATATACATTTA
1 TATATACATATA
94638875 TATATA
1 TATATA
94638881 GTATTATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
TATATACATATA
Found at i:94640184 original size:18 final size:17
Alignment explanation
Indices: 94640161--94640199 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
94640151 AATCTTACTA
*
94640161 ATATATTACTTTTATTAT
1 ATATATTACATTTATT-T
*
94640179 ATATATTAGATTTATTT
1 ATATATTACATTTATTT
94640196 ATAT
1 ATAT
94640200 TTTTTAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
ATATATTACATTTATTT
Found at i:94641245 original size:19 final size:21
Alignment explanation
Indices: 94641221--94641267 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
94641211 TTTTTTCATT
*
94641221 AATTATAG-AACATTAT-AAA
1 AATTATAGAAAAATTATAAAA
94641240 AATTATAGAAAAATTATAAAA
1 AATTATAGAAAAATTATAAAA
94641261 AATTATA
1 AATTATA
94641268 AAAGTTCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 8 0.32
20 7 0.28
21 10 0.40
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (21 bp):
AATTATAGAAAAATTATAAAA
Found at i:94641268 original size:10 final size:10
Alignment explanation
Indices: 94641221--94641270 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
94641211 TTTTTTCATT
*
94641221 AATTATAGAA
1 AATTATAAAA
*
94641231 CATTAT-AAA
1 AATTATAAAA
94641240 AATTATAGAAA
1 AATTATA-AAA
94641251 AATTATAAAA
1 AATTATAAAA
94641261 AATTATAAAA
1 AATTATAAAA
94641271 GTTCCCCAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 7 0.20
10 18 0.51
11 10 0.29
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (10 bp):
AATTATAAAA
Found at i:94644020 original size:48 final size:48
Alignment explanation
Indices: 94643849--94644190 Score: 328
Period size: 48 Copynumber: 7.1 Consensus size: 48
94643839 CCATGGCAAC
* * * **
94643849 ATGTGATATGTGATTTCCGTATAAGACCATAGGTGGGCTATGACATCGGAGAG
1 ATGTGATATGTGA--TCCGTGTAAGACCATAGTTGGGCTATGGCATC---GTT
* * *
94643902 ATGTGATTATGTGCTTCCGTATAAGACCATA-TCTGGGATATGGCA---TT
1 ATGTGA-TATGTG-ATCCGTGTAAGACCATAGT-TGGGCTATGGCATCGTT
* *
94643949 AGTGAGATATGTGATTCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
1 A-TGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
*
94643998 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGTCTATGGCATCGATT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCG-TT
* * * *
94644047 -TGTGATATGTGATCTGTGTAAGACCATAGCTAGGCTATGGCATCGAT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
* * * *
94644094 ATGTGATATGTGATTACGTGTAAGACTATAGCTGGGCTATGGCATCGAT
1 ATGTGATATGTGA-TCCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
*
94644143 ATGTGA-A--T-AT--GTGTAAGACCATAGTTGGGCTATGGCATCATT
1 ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
94644185 ATGTGA
1 ATGTGA
94644191 AGATGTGTAA
Statistics
Matches: 251, Mismatches: 27, Indels: 33
0.81 0.09 0.11
Matches are distributed among these distances:
42 34 0.14
44 1 0.00
45 1 0.00
46 26 0.10
47 9 0.04
48 100 0.40
49 42 0.17
53 32 0.13
54 6 0.02
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (48 bp):
ATGTGATATGTGATCCGTGTAAGACCATAGTTGGGCTATGGCATCGTT
Found at i:94644069 original size:96 final size:94
Alignment explanation
Indices: 94643954--94644225 Score: 330
Period size: 96 Copynumber: 2.9 Consensus size: 94
94643944 GCATTAGTGA
94643954 GATATGTGATTCGTGTAAGACCATAGTTGGGCTATGGCATCGTTATGTGATATGTGATCCGTGTA
1 GATATGTGATT-GTGTAAGACCATAGTTGGGCTATGGCATCGTTATGTGATATGTGAT-CGTGTA
* *
94644019 AGACCATAGTTGGTCTATGGCATCGATTTGT
64 AGACCATAGTTGGACTATGGCATCGATATGT
* * *
94644050 GATATGTGATCTGTGTAAGACCATAGCTAGGCTATGGCATCGATATGTGATATGTGATTACGTGT
1 GATATGTGAT-TGTGTAAGACCATAGTTGGGCTATGGCATCGTTATGTGATATGTGA-T-CGTGT
* * *
94644115 AAGACTATAGCTGGGCTATGGCATCGATATGT
63 AAGACCATAGTTGGACTATGGCATCGATATGT
*
94644147 GA-A--T-A-TGTGTAAGACCATAGTTGGGCTATGGCATCATTATGTGA-A---GAT-GTGTAAG
1 GATATGTGATTGTGTAAGACCATAGTTGGGCTATGGCATCGTTATGTGATATGTGATCGTGTAAG
* *
94644202 ACCAAAGTTGAACTATGGCATCGA
66 ACCATAGTTGGACTATGGCATCGA
94644226 GAAAACGAAG
Statistics
Matches: 157, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
84 26 0.17
86 1 0.01
87 2 0.01
90 1 0.01
91 35 0.22
93 1 0.01
94 1 0.01
96 53 0.34
97 37 0.24
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (94 bp):
GATATGTGATTGTGTAAGACCATAGTTGGGCTATGGCATCGTTATGTGATATGTGATCGTGTAAG
ACCATAGTTGGACTATGGCATCGATATGT
Found at i:94644157 original size:42 final size:42
Alignment explanation
Indices: 94644098--94644225 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
94644088 ATCGATATGT
* * *
94644098 GATATGTGATTACGTGTAAGACTATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
*
94644140 GATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* * * **
94644182 -ATTATGTGAAGATGTGTAAGACCAAAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
94644224 GA
1 GA
94644226 GAAAACGAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
41 1 0.01
42 74 0.97
43 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:94648711 original size:52 final size:51
Alignment explanation
Indices: 94648597--94648780 Score: 234
Period size: 52 Copynumber: 3.7 Consensus size: 51
94648587 ATATCACATA
* * * *
94648597 CCGAGGCCATAGCCCAGCCATGGTCTTATACGGATCACATATCACA---CT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACGAAGCACATATCACATTTCT
* * * *
94648645 --GATGCCATATCCCAGATATGGTCTTATACAGTAGCACATATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATAC-GAAGCACATATCACATTTCT
*
94648695 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAGCACAAATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATAC-GAAGCACATATCACATTTCT
94648747 CCGAAGCCATAGCCCAGCTATGGTCTTATACGAA
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACGAA
94648781 AATCACATTT
Statistics
Matches: 118, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
46 25 0.21
47 13 0.11
50 2 0.02
51 3 0.03
52 75 0.64
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
CCGAAGCCATAGCCCAGCTATGGTCTTATACGAAGCACATATCACATTTCT
Found at i:94652702 original size:27 final size:26
Alignment explanation
Indices: 94652665--94652779 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
94652655 AGCATGGCTG
* *
94652665 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94652691 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
94652719 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
94652746 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
94652773 CCAGAAC
1 CCAGAAC
94652780 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94652724 original size:54 final size:54
Alignment explanation
Indices: 94652665--94652779 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
94652655 AGCATGGCTG
*
94652665 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
94652719 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
94652773 CCAGAAC
1 CCAGAAC
94652780 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:94664864 original size:22 final size:20
Alignment explanation
Indices: 94664830--94664872 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
94664820 CGTTACCTTA
94664830 TTTTTGAAAACACGAGAAATT
1 TTTTTGAAAACACGA-AAATT
*
94664851 TTTTTTAAAGACACGAAAATT
1 TTTTTGAAA-ACACGAAAATT
94664872 T
1 T
94664873 CGAAACCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (20 bp):
TTTTTGAAAACACGAAAATT
Found at i:94665338 original size:26 final size:26
Alignment explanation
Indices: 94665283--94665337 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
94665273 TTTTATTTTT
**
94665283 CTGCTGGGCTAATGGGCGAACTGGGC
1 CTGCTGGGCTGCTGGGCGAACTGGGC
94665309 CTGCTGGGCTGCTGGG-GAA-TGGG-
1 CTGCTGGGCTGCTGGGCGAACTGGGC
94665332 CTGCTG
1 CTGCTG
94665338 CAGGCCTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 6 0.22
24 4 0.15
25 3 0.11
26 14 0.52
ACGTcount: A:0.11, C:0.22, G:0.45, T:0.22
Consensus pattern (26 bp):
CTGCTGGGCTGCTGGGCGAACTGGGC
Found at i:94665626 original size:13 final size:13
Alignment explanation
Indices: 94665608--94665637 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
94665598 GGAAACCCTA
94665608 GCCGCCGCGCCGC
1 GCCGCCGCGCCGC
94665621 GCCGCCGCGCCGC
1 GCCGCCGCGCCGC
94665634 GCCG
1 GCCG
94665638 TCGCTTGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.60, G:0.40, T:0.00
Consensus pattern (13 bp):
GCCGCCGCGCCGC
Found at i:94665748 original size:21 final size:20
Alignment explanation
Indices: 94665691--94665747 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
94665681 GGAGGCTCTC
* *
94665691 CTCTTCTTCTCATTTCTCCT
1 CTCTTTTTCTCATTTTTCCT
* *
94665711 CTCTTTCTCTCCTTTTTCCT
1 CTCTTTTTCTCATTTTTCCT
94665731 CTTCTTTTTCTC-TTTTT
1 C-TCTTTTTCTCATTTTT
94665748 TGCAAGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 22 0.71
21 9 0.29
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (20 bp):
CTCTTTTTCTCATTTTTCCT
Found at i:94666029 original size:29 final size:29
Alignment explanation
Indices: 94665988--94666101 Score: 156
Period size: 29 Copynumber: 3.9 Consensus size: 29
94665978 AAATTTTGAG
94665988 AAAGTTTAGGGGTCAAAATGTAATTTCAA
1 AAAGTTTAGGGGTCAAAATGTAATTTCAA
* * * *
94666017 AAAGTTTATGGGTTAAAATGTAATTTTATG
1 AAAGTTTAGGGGTCAAAATGTAATTTCA-A
* *
94666047 AAATTTTAGGGGTCAAAATGCAATTTCAA
1 AAAGTTTAGGGGTCAAAATGTAATTTCAA
*
94666076 AAAGTTTAGGGGCCAAAATGTAATTT
1 AAAGTTTAGGGGTCAAAATGTAATTT
94666102 TTTATTTTTG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
29 48 0.68
30 23 0.32
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.34
Consensus pattern (29 bp):
AAAGTTTAGGGGTCAAAATGTAATTTCAA
Found at i:94666030 original size:59 final size:60
Alignment explanation
Indices: 94665957--94666087 Score: 171
Period size: 59 Copynumber: 2.2 Consensus size: 60
94665947 TAAATGCAAC
* *
94665957 AAAAGTTT-TGGGGTTGAAACAAAATTTTGA-GAAAGTTTAGGGGTCAAAATGTAATTTCA
1 AAAAGTTTATGGGGTTAAAACAAAATTTT-ATGAAAGTTTAGGGGTCAAAATGCAATTTCA
*** *
94666016 AAAAGTTTAT-GGGTTAAAATGTAATTTTATGAAATTTTAGGGGTCAAAATGCAATTTCA
1 AAAAGTTTATGGGGTTAAAACAAAATTTTATGAAAGTTTAGGGGTCAAAATGCAATTTCA
94666075 AAAAGTTTA-GGGG
1 AAAAGTTTATGGGG
94666088 CCAAAATGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
58 1 0.02
59 61 0.97
60 1 0.02
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.34
Consensus pattern (60 bp):
AAAAGTTTATGGGGTTAAAACAAAATTTTATGAAAGTTTAGGGGTCAAAATGCAATTTCA
Found at i:94666094 original size:59 final size:59
Alignment explanation
Indices: 94665979--94666102 Score: 187
Period size: 59 Copynumber: 2.1 Consensus size: 59
94665969 GTTGAAACAA
* * **
94665979 AATTTTGAGAAAGTTTAGGGGTCAAAATGTAATTTCAAAAAGTTTATGGGTTAAAATGT
1 AATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTCAAAAAGTTTAGGGGCCAAAATGT
*
94666038 AATTTT-ATGAAATTTTAGGGGTCAAAATGCAATTTCAAAAAGTTTAGGGGCCAAAATGT
1 AATTTTGA-GAAAGTTTAGGGGTCAAAATGCAATTTCAAAAAGTTTAGGGGCCAAAATGT
94666097 AATTTT
1 AATTTT
94666103 TTATTTTTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 1 0.02
59 58 0.98
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35
Consensus pattern (59 bp):
AATTTTGAGAAAGTTTAGGGGTCAAAATGCAATTTCAAAAAGTTTAGGGGCCAAAATGT
Found at i:94666629 original size:73 final size:74
Alignment explanation
Indices: 94666264--94667535 Score: 1565
Period size: 74 Copynumber: 17.3 Consensus size: 74
94666254 TTTTTATTTG
** * * * *
94666264 AAAA-ACAGAAATTGGAAATA-CTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAGCAATATGAG
1 AAAAGACAGAAATTAAAAATACCTCAGCGTG-ACCCGAGGCTCAACTCACCTCT-GTATTATGAG
**
94666327 TTGATTTT-TG
64 TTGATTTTAAA
* * * ** * *
94666337 AAAA-ACA-AAATTTAAATGAAATACATCGGCATGGTCCGAGGCTCAACTCACCTCTCGCAATAT
1 AAAAGACAGAAA-TT-AA--AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTAT
94666400 GAGTTGATTTTTTTGAAA
61 GAGTTGA---TTTT-AAA
* *
94666418 AAAA-ACAGAAATTTAAAAGAAACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTAATATGA
1 AAAAGACAGAAA-TTAAAA-ATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGA
94666482 GTTGATTTTAAA
63 GTTGATTTTAAA
* *
94666494 AAAAGACAGAAATTAAAAATACCTCAGCG-GATCCGAGGCTCAACTCACCTTTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
94666558 GATTTTAAAAA
66 GATTTT--AAA
94666569 AAAAGACA-AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTA-T-TGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
94666631 GATTTT-AA
66 GATTTTAAA
*
94666639 AAAAG--AG-----AGAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTA-TATGAGT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGT
94666696 TGATTTTTTTTAAA
65 TGA----TTTTAAA
*
94666710 AAAAGACATAAATT-AAAA-ACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGT
94666773 TGATTTT-AA
65 TGATTTTAAA
* *
94666782 AAAAGATAGAAATTAAAAATACCTCAGCGTGACTCGAGGCTCAACTCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
94666847 GATTTT-AA
66 GATTTTAAA
*
94666855 AAAAG--AG-----AGAAATACCTCAGCGTGACCCGA-GCTCAACTCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
*
94666912 GATTTTTTTAA
66 GA--TTTTAAA
*
94666923 AAAAGACA-AAATTAAAAATACCTCAGCGTGACCCGAAGCTCAACTCACCTCTCGTATTAT-AGT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGT
94666986 T-ATTTT-AA
65 TGATTTTAAA
94666994 AAAAG--AG-AATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
94667056 GATTTTTAAAA
66 GA-TTTT-AAA
94667067 AAAAGAC-GAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
*
94667131 GATTTAAAA
66 GATTTTAAA
94667140 AAAAG-CAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAA-TCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
94667203 GATTTTTTTTTAAA
66 GA-----TTTTAAA
*
94667217 AAAAGACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAGT
94667282 TGATTTT-AA
65 TGATTTTAAA
94667291 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
**
94667356 GATTTTTTTTA
66 GA--TTTTAAA
*
94667367 AAAAGACATAAATTAAAAATACCTCA--GTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
1 AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
94667430 GATTTTAAAA
66 GATTTT-AAA
*
94667440 AAAAGATC-GAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTTTCGTATTATGAG
1 AAAAGA-CAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT-GTATTATGAG
*
94667504 TTGATTTTTGAA
64 TTGA-TTTTAAA
*
94667516 AAAA-ACAGAAATGAAAAATA
1 AAAAGACAGAAATTAAAAATA
94667536 TTTCTTGAAA
Statistics
Matches: 1082, Mismatches: 43, Indels: 146
0.85 0.03 0.11
Matches are distributed among these distances:
64 38 0.04
65 33 0.03
66 29 0.03
67 4 0.00
68 15 0.01
69 47 0.04
70 13 0.01
71 20 0.02
72 48 0.04
73 161 0.15
74 196 0.18
75 166 0.15
76 143 0.13
77 46 0.04
78 37 0.03
79 14 0.01
80 57 0.05
81 9 0.01
82 6 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (74 bp):
AAAAGACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTGTATTATGAGTT
GATTTTAAA
Found at i:94668388 original size:1 final size:1
Alignment explanation
Indices: 94668377--94668446 Score: 59
Period size: 1 Copynumber: 70.0 Consensus size: 1
94668367 TTCATCTTGA
* * * * * * * * *
94668377 TTTTTTCTTTTTCTGTTTTTTTTTTTTTTTTTTTTTTCTTGTTTTTTGTTATTTTTTATTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
94668442 TTTTT
1 TTTTT
94668447 AGGCATAATA
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.03, C:0.04, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:94668410 original size:23 final size:24
Alignment explanation
Indices: 94668377--94668446 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
94668367 TTCATCTTGA
* *
94668377 TTTTTTCTTTTTCTGTTTTTTTTTT
1 TTTTTTTTTTTTCTG-TTTTTTGTT
94668402 TTTTTTTTTTTTCTTGTTTTTTGTT
1 TTTTTTTTTTTTC-TGTTTTTTGTT
* *
94668427 ATTTTTTATTTT-TGTTTTTT
1 TTTTTTTTTTTTCTGTTTTTT
94668447 AGGCATAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.20
25 30 0.75
26 2 0.05
ACGTcount: A:0.03, C:0.04, G:0.06, T:0.87
Consensus pattern (24 bp):
TTTTTTTTTTTTCTGTTTTTTGTT
Found at i:94668425 original size:7 final size:7
Alignment explanation
Indices: 94668377--94668446 Score: 65
Period size: 8 Copynumber: 9.9 Consensus size: 7
94668367 TTCATCTTGA
*
94668377 TTTTTTC
1 TTTTTTG
94668384 TTTTTCTG
1 TTTTT-TG
94668392 TTTTTT-
1 TTTTTTG
94668398 TTTTTT-
1 TTTTTTG
94668404 TTTTTT-
1 TTTTTTG
94668410 TTTTCTTG
1 TTTT-TTG
94668418 TTTTTTG
1 TTTTTTG
*
94668425 TTATTTTT
1 TT-TTTTG
94668433 TATTTTTG
1 T-TTTTTG
94668441 TTTTTT
1 TTTTTT
94668447 AGGCATAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
6 16 0.29
7 18 0.33
8 20 0.36
9 1 0.02
ACGTcount: A:0.03, C:0.04, G:0.06, T:0.87
Consensus pattern (7 bp):
TTTTTTG
Found at i:94671715 original size:15 final size:15
Alignment explanation
Indices: 94671674--94671715 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
94671664 TTACATTTTT
94671674 TTCTAT-TAATTATA
1 TTCTATATAATTATA
*
94671688 -TATATATATATTATA
1 TTCTATATA-ATTATA
94671703 TTCTATATAATTA
1 TTCTATATAATTA
94671716 GATAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 4 0.17
14 2 0.09
15 10 0.43
16 7 0.30
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (15 bp):
TTCTATATAATTATA
Found at i:94671986 original size:33 final size:31
Alignment explanation
Indices: 94671938--94672081 Score: 132
Period size: 30 Copynumber: 4.5 Consensus size: 31
94671928 TACTATATAG
*
94671938 TTTTTTTTTAATTTTTCATATATTCTTATTTTTA
1 TTTTTTTTT--TTTTTTATATATT-TTATTTTTA
* * *
94671972 TTTTTTTTTTTTTTTATTTGTTTT-TTTTTT
1 TTTTTTTTTTTTTTTATATATTTTATTTTTA
*
94672002 TTTTTTTTTTTTTTTAT-TATTTTTTTTTTA
1 TTTTTTTTTTTTTTTATATATTTTATTTTTA
* *
94672032 TTTTGTTTTGTTTTTTATATTTTTTATATTTT-
1 TTTT-TTTTTTTTTTTATATATTTTAT-TTTTA
* *
94672064 TGTTTTTTCTATTTTTAT
1 T-TTTTTTTTTTTTTTAT
94672082 TTTTTTTTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
29 5 0.05
30 31 0.33
31 14 0.15
32 27 0.29
33 7 0.08
34 9 0.10
ACGTcount: A:0.12, C:0.02, G:0.03, T:0.83
Consensus pattern (31 bp):
TTTTTTTTTTTTTTTATATATTTTATTTTTA
Found at i:94671999 original size:24 final size:23
Alignment explanation
Indices: 94671966--94672092 Score: 132
Period size: 22 Copynumber: 5.5 Consensus size: 23
94671956 TATATTCTTA
*
94671966 TTTTTATTTTTTTTTTTTTTTA-
1 TTTTTTTTTTTTTTTTTTTTTAT
*
94671988 TTTGTTTTTTTTTTTTTTTTT-T
1 TTTTTTTTTTTTTTTTTTTTTAT
* *
94672010 TTTTTTTATTATTTTTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTAT
*
94672033 TTTGTTTTGTTTTTTATATTTTTTAT
1 TTT-TTTT-TTTTTT-TTTTTTTTAT
* * * *
94672059 ATTTTTGTTTTTTCTATTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTAT
94672082 TTTTTTTTTTT
1 TTTTTTTTTTT
94672093 CATATTTTTC
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
22 37 0.44
23 20 0.24
24 10 0.12
25 7 0.08
26 11 0.13
ACGTcount: A:0.09, C:0.01, G:0.03, T:0.87
Consensus pattern (23 bp):
TTTTTTTTTTTTTTTTTTTTTAT
Found at i:94672031 original size:60 final size:62
Alignment explanation
Indices: 94671938--94672101 Score: 174
Period size: 62 Copynumber: 2.6 Consensus size: 62
94671928 TACTATATAG
* * * *
94671938 TTTTTTTTTAATTTTTCATATATTCTTATTTTTATTTTTTTT-TTTTTT-TATTTGTTT-TTTTT
1 TTTTTTTTTATTTTTTTAT-TATT-TTTTTTTTATTTTTTTTGTTTTTTATATTT-TTTATATTT
*
94672000 TTTTTTTTTTTTTTTTTATTATTTTTTTTTTATTTTGTTTTGTTTTTTATATTTTTTATATTT
1 TTTTTTTTTATTTTTTTATTATTTTTTTTTTATTTT-TTTTGTTTTTTATATTTTTTATATTT
* * * *
94672063 TTGTTTTTTCTATTTTTATT-TTTTTTTTTTCATATTTTT
1 TTTTTTTTTATTTTTTTATTATTTTTTTTTT-ATTTTTTT
94672102 CTAATTCGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
60 12 0.14
61 8 0.09
62 38 0.43
63 30 0.34
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (62 bp):
TTTTTTTTTATTTTTTTATTATTTTTTTTTTATTTTTTTTGTTTTTTATATTTTTTATATTT
Found at i:94672101 original size:1 final size:1
Alignment explanation
Indices: 94671966--94672092 Score: 110
Period size: 1 Copynumber: 127.0 Consensus size: 1
94671956 TATATTCTTA
* * * * *
94671966 TTTTTATTTTTTTTTTTTTTTATTTGTTTTTTTTTTTTTTTTTTTTTTTTTATTATTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * * * *
94672031 ATTTTGTTTTGTTTTTTATATTTTTTATATTTTTGTTTTTTCTATTTTTATTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
94672093 CATATTTTTC
Statistics
Matches: 94, Mismatches: 32, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 94 1.00
ACGTcount: A:0.09, C:0.01, G:0.03, T:0.87
Consensus pattern (1 bp):
T
Found at i:94672102 original size:9 final size:8
Alignment explanation
Indices: 94672043--94672101 Score: 54
Period size: 8 Copynumber: 7.6 Consensus size: 8
94672033 TTTGTTTTGT
94672043 TTTTTATA
1 TTTTTATA
94672051 TTTTTTATA
1 -TTTTTATA
*
94672060 TTTTTGT-
1 TTTTTATA
*
94672067 TTTTTCTA
1 TTTTTATA
94672075 TTTTTAT-
1 TTTTTATA
94672082 TTTTT-T-
1 TTTTTATA
94672088 TTTTTCATA
1 TTTTT-ATA
94672097 TTTTT
1 TTTTT
94672102 CTAATTCGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
6 6 0.14
7 11 0.26
8 13 0.30
9 13 0.30
ACGTcount: A:0.14, C:0.03, G:0.02, T:0.81
Consensus pattern (8 bp):
TTTTTATA
Found at i:94683838 original size:44 final size:44
Alignment explanation
Indices: 94683771--94684323 Score: 483
Period size: 44 Copynumber: 12.6 Consensus size: 44
94683761 AAGTCATTAA
* * * * *
94683771 AGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATTGAGGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * * *
94683815 AGCAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * * *
94683859 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * *
94683903 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * *
94683947 AGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* * * * *
94683991 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* *
94684035 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * ** * *
94684079 AGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT
1 AGCAGATCTTGTCTTCCTATATTG-GCGTGAAGTAGATCGAAGAT
* * * * * *
94684123 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* *
94684167 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
* * * ** * *
94684211 AGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT
1 AGCAGATCTTGTCTTCCTATATTG-GCGTGAAGTAGATCGAAGAT
* * *
94684255 -GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGAT
* *
94684299 AGCAGATCCTGCCTTCCTATATTGG
1 AGCAGATCTTGTCTTCCTATATTGG
94684324 TAGGAAGTGG
Statistics
Matches: 400, Mismatches: 95, Indels: 27
0.77 0.18 0.05
Matches are distributed among these distances:
43 84 0.21
44 230 0.57
45 86 0.22
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGAT
Found at i:94684331 original size:132 final size:132
Alignment explanation
Indices: 94683769--94684306 Score: 941
Period size: 132 Copynumber: 4.1 Consensus size: 132
94683759 TAAAGTCATT
* * *
94683769 AAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATTGAGGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
94683834 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
94683899 AG
131 AG
* *
94683901 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* * *
94683966 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
94684031 AG
131 AG
94684033 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
94684098 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
94684163 AG
131 AG
94684165 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
94684230 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
94684295 AG
131 AG
*
94684297 ATAGCAGATC
1 AAAGCAGATC
94684307 CTGCCTTCCT
Statistics
Matches: 390, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 390 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA
AG
Found at i:94684558 original size:95 final size:96
Alignment explanation
Indices: 94684341--94684574 Score: 389
Period size: 95 Copynumber: 2.4 Consensus size: 96
94684331 TGGATTGAAA
94684341 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
1 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
* * *
94684406 ATGTGACTACAGTGGAGTACATTGAAGCCGCT
66 A-CTGACTACAGTGGAGTACATCGAAGCCGAT
* *
94684438 AACTCTATCTCCCTGTATTCGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCC
1 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
94684503 -CTGACTACAGTGGAGTACATCGAAGCCGAT
66 ACTGACTACAGTGGAGTACATCGAAGCCGAT
* *
94684533 AACTCTATCTCCTTGTATTTAGCAGTGGAATAGATTGAAGAT
1 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
94684575 TACAGATCTT
Statistics
Matches: 129, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
95 66 0.51
97 63 0.49
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (96 bp):
AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC
ACTGACTACAGTGGAGTACATCGAAGCCGAT
Found at i:94687471 original size:25 final size:25
Alignment explanation
Indices: 94687437--94687493 Score: 105
Period size: 25 Copynumber: 2.2 Consensus size: 25
94687427 AGTATACATA
94687437 ATAATAATATATACATACAAAGTAC
1 ATAATAATATATACATACAAAGTAC
94687462 ATAATAATATATACATACAAAGTAC
1 ATAATAATATATACATACAAAGTAC
94687487 ACTAATA
1 A-TAATA
94687494 TTTAAAGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 26 0.84
26 5 0.16
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (25 bp):
ATAATAATATATACATACAAAGTAC
Found at i:94687540 original size:16 final size:16
Alignment explanation
Indices: 94687516--94687546 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94687506 AATAGTAAAC
*
94687516 ATAATATTAATATTAA
1 ATAAAATTAATATTAA
94687532 ATAAAATTAATATTA
1 ATAAAATTAATATTA
94687547 CAAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAAATTAATATTAA
Found at i:94688169 original size:16 final size:16
Alignment explanation
Indices: 94688148--94688205 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
94688138 AAAACTCAAA
94688148 TTTTATTTTTTACTTT
1 TTTTATTTTTTACTTT
*
94688164 TTTTATATTTTAC-TT
1 TTTTATTTTTTACTTT
*
94688179 GTTTATTTTATTA-TTT
1 TTTTATTTT-TTACTTT
*
94688195 ATTATATTTTT
1 -TTTTATTTTT
94688206 ATATGTATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 9 0.26
16 18 0.53
17 7 0.21
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (16 bp):
TTTTATTTTTTACTTT
Found at i:94688187 original size:23 final size:23
Alignment explanation
Indices: 94688147--94688192 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
94688137 TAAAACTCAA
* *
94688147 ATTTTATTTTTTACTTTTTTTAT
1 ATTTTATTGTTTACTTTTATTAT
94688170 ATTTTACTTGTTTA-TTTTATTAT
1 ATTTTA-TTGTTTACTTTTATTAT
94688193 TTATTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (23 bp):
ATTTTATTGTTTACTTTTATTAT
Found at i:94695346 original size:29 final size:30
Alignment explanation
Indices: 94695304--94695368 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
94695294 ATAGTTCATG
* *
94695304 TACCATATTGAACATTT-TTAAAATATAAA
1 TACCATATTAAACATTTATAAAAATATAAA
94695333 TACCATATTAAACATTTCATAAAAATATAAA
1 TACCATATTAAACATTT-ATAAAAATATAAA
94695364 TACCA
1 TACCA
94695369 AATATGACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.34
Consensus pattern (30 bp):
TACCATATTAAACATTTATAAAAATATAAA
Found at i:94698223 original size:36 final size:36
Alignment explanation
Indices: 94698176--94698247 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
94698166 GGATTGGCTC
94698176 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
1 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
94698212 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
1 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
94698248 TCCAGTTCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (36 bp):
ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
Found at i:94705762 original size:15 final size:16
Alignment explanation
Indices: 94705736--94705765 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94705726 CTTTATTTTC
94705736 TTTTATTTATTTTATG
1 TTTTATTTATTTTATG
94705752 TTTTA-TTATTTTAT
1 TTTTATTTATTTTAT
94705766 ATTATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATTTATTTTATG
Found at i:94705773 original size:8 final size:8
Alignment explanation
Indices: 94705738--94705794 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
94705728 TTATTTTCTT
94705738 TTATT-TA
1 TTATTATA
*
94705745 TT-TTATG
1 TTATTATA
94705752 TT-TTATTA
1 TTATTA-TA
94705760 TT-TTATA
1 TTATTATA
94705767 TTATTATA
1 TTATTATA
*
94705775 TTAATATA
1 TTATTATA
*
94705783 CTATTATA
1 TTATTATA
94705791 TTAT
1 TTAT
94705795 ATACTTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
6 2 0.05
7 12 0.29
8 27 0.66
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TTATTATA
Found at i:94705782 original size:16 final size:15
Alignment explanation
Indices: 94705755--94705799 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
94705745 TTTTATGTTT
*
94705755 TATTAT-TT-TATAT
1 TATTATATTATATAC
94705768 TATTATATTAATATAC
1 TATTATATT-ATATAC
94705784 TATTATATTATATAC
1 TATTATATTATATAC
94705799 T
1 T
94705800 TAAATACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 6 0.21
14 2 0.07
15 7 0.25
16 13 0.46
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATATTATATAC
Found at i:94705814 original size:24 final size:24
Alignment explanation
Indices: 94705763--94705814 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
94705753 TTTATTATTT
*
94705763 TATATTATTATATTAATATACTAT
1 TATATTATTATATTAATATACTAG
94705787 TATATTA-TATACTTAA-ATACTAAG
1 TATATTATTATA-TTAATATACT-AG
94705811 TATA
1 TATA
94705815 AATATATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (24 bp):
TATATTATTATATTAATATACTAG
Found at i:94710785 original size:22 final size:21
Alignment explanation
Indices: 94710752--94710798 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
94710742 ATTTTAGTAA
* *
94710752 ATTTTGTATTTATATTTTGAGG
1 ATTTTGTATTTAGATTTCG-GG
94710774 ATTTT-TATTTTAGATTTCGGG
1 ATTTTGTA-TTTAGATTTCGGG
94710795 ATTT
1 ATTT
94710799 AGTTTTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.21, C:0.02, G:0.17, T:0.60
Consensus pattern (21 bp):
ATTTTGTATTTAGATTTCGGG
Found at i:94711216 original size:20 final size:20
Alignment explanation
Indices: 94711173--94711216 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
94711163 AAAAAACATC
* *
94711173 TAAAAAGCAATAAAAGTAAT
1 TAAAAAGCAATAAAAATAAA
*
94711193 TAAAAAGTAATAAAAATAAA
1 TAAAAAGCAATAAAAATAAA
94711213 TAAA
1 TAAA
94711217 TATTCATTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (20 bp):
TAAAAAGCAATAAAAATAAA
Found at i:94720799 original size:14 final size:14
Alignment explanation
Indices: 94720780--94720835 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 14
94720770 TTTTAAACAT
94720780 TATAATATAATATA
1 TATAATATAATATA
*
94720794 TATAATATATTATA
1 TATAATATAATATA
* * * *
94720808 AATGATAGATTATA
1 TATAATATAATATA
*
94720822 GATAA-ATAATATA
1 TATAATATAATATA
94720835 T
1 T
94720836 TCTGTCAATC
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
13 6 0.18
14 27 0.82
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (14 bp):
TATAATATAATATA
Found at i:94724051 original size:39 final size:41
Alignment explanation
Indices: 94724008--94724087 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 41
94723998 ATATATTTGT
* *
94724008 TATTAAATTGAT-TTT-TATTATT-TATTATTATTATTATTC
1 TATTAAATT-ATATTTATATTATTAAATTATGATTATTATTC
94724047 TATTAAATTATAATTTATATTATTAAATTATGATTATTATT
1 TATTAAATTAT-ATTTATATTATTAAATTATGATTATTATT
94724088 ATTAAAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 2 0.06
39 9 0.26
40 3 0.09
41 7 0.20
42 14 0.40
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (41 bp):
TATTAAATTATATTTATATTATTAAATTATGATTATTATTC
Found at i:94724070 original size:20 final size:20
Alignment explanation
Indices: 94724022--94724093 Score: 76
Period size: 20 Copynumber: 3.5 Consensus size: 20
94724012 AAATTGATTT
* *
94724022 TTATTATT-TATTATTATTA
1 TTATTATTAAATTATAATTA
94724041 TTATTCTATTAAATTATAATT-
1 TTA-T-TATTAAATTATAATTA
*
94724062 TATATTATTAAATTATGATTA
1 T-TATTATTAAATTATAATTA
94724083 TTATTATTAAA
1 TTATTATTAAA
94724094 AATAAATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 3 0.07
20 25 0.56
21 7 0.16
22 10 0.22
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (20 bp):
TTATTATTAAATTATAATTA
Found at i:94727434 original size:131 final size:129
Alignment explanation
Indices: 94727166--94727647 Score: 468
Period size: 131 Copynumber: 3.7 Consensus size: 129
94727156 TTATAATCAT
* * ** *
94727166 TCATGTTTTCTAAAAATCCTTTAAAACGAAGGCGATGTTCGACATTTGGCAATTCGTGGAATCGT
1 TCATGTTTTCTAAAAAT-CTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCG-AGAATCGT
* * * ** ** * * *
94727231 GCCCTAACGTGTTGGGTTGCAATTTCTCTTTTGCACAAAATAATCGAATGTCCCTTTGGAATTTC
64 GCCCTATCGTGCTGGGTTGCGATTTC-CCGTTGTTCAAAATAATCGAATATTCCTTTAGAATTTC
*
94727296 AT
128 AC
* * *
94727298 TCATGTTTTCTAAAAACTCTTTAAAATGAAGGTAATACTCGATGTTTGGCAATTCGAGAATCGTG
1 TCATGTTTTCTAAAAA-TCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGAGAATCGTG
* *
94727363 CCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATATCA
65 CCCTATCGTGCTGGGTTGCGATTTCCCGTT-GTTCAAAATAATCGAATATTCCTTTAGAATTTCA
94727428 C
129 C
* * * * * * * *
94727429 CCATGTCTT-TAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCAGGGAATTGT
1 TCATGTTTTCTAAA-AATCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTC-GAGAATCGT
* * *
94727493 GCCCTATCGCGCTGGGTTGCGATTTCCTGTTGTTCAAAATAATCGAACATTCCCTTTAGAATTTC
64 GCCCTATCGTGCTGGGTTGCGATTTCCCGTTGTTCAAAATAATCGAATATT-CCTTTAGAATTTC
94727558 AC
128 AC
* ** * * * *
94727560 TCAT-ATTTCTTAAAAAT-TTTAAAAATAAGGCAATGCTCGATGTTTAGAAATTTGAGGAATCAT
1 TCATGTTTTC-TAAAAATCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGA-GAATCGT
* *
94727623 GCCCTA-CTGTGTTGGGTTTCGATTT
64 GCCCTATC-GTGCTGGGTTGCGATTT
94727648 TTCGTTGGAC
Statistics
Matches: 288, Mismatches: 53, Indels: 20
0.80 0.15 0.06
Matches are distributed among these distances:
129 2 0.01
130 114 0.40
131 120 0.42
132 51 0.18
133 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (129 bp):
TCATGTTTTCTAAAAATCTTTAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGAGAATCGTGC
CCTATCGTGCTGGGTTGCGATTTCCCGTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCAC
Found at i:94728595 original size:35 final size:35
Alignment explanation
Indices: 94728556--94728626 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
94728546 TCTAGGATCA
*
94728556 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
* *
94728591 CATATCTTTGAAGATTACTTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
94728626 C
1 C
94728627 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:94736508 original size:46 final size:46
Alignment explanation
Indices: 94736458--94736628 Score: 279
Period size: 46 Copynumber: 3.7 Consensus size: 46
94736448 TCATGTATTA
* *
94736458 TGTAAGATATTTATTATGTAAGTTATGAAATTTGATCTTTAAATTC
1 TGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAAATTC
94736504 TGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAAATTC
1 TGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAAATTC
* *
94736550 TGTAAGTTATGTATTATGTAAGTTTTGAAATTTGATCTTTAAATTA
1 TGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAAATTC
* *
94736596 TGTAACTCATGTATTATGTAAGTTATGTAAATT
1 TGTAAGTTATGTATTATGTAAGTTATG-AAATT
94736629 ATGTAAGTTA
Statistics
Matches: 117, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
46 112 0.96
47 5 0.04
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (46 bp):
TGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAAATTC
Found at i:94736525 original size:16 final size:16
Alignment explanation
Indices: 94736504--94736705 Score: 93
Period size: 16 Copynumber: 13.0 Consensus size: 16
94736494 CTTTAAATTC
94736504 TGTAAGTTATGTATTA
1 TGTAAGTTATGTATTA
*
94736520 TGTAAGTTATGAAATT-
1 TGTAAGTTATG-TATTA
** ** *
94736536 TG-ATCTT-TAAATTC
1 TGTAAGTTATGTATTA
94736550 TGTAAGTTATGTATTA
1 TGTAAGTTATGTATTA
* *
94736566 TGTAAGTTTTGAAATT-
1 TGTAAGTTATG-TATTA
** **
94736582 TG-ATCTT-TAAATTA
1 TGTAAGTTATGTATTA
* *
94736596 TGTAACTCATGTATTA
1 TGTAAGTTATGTATTA
94736612 TGTAAGTTATGTAAATTA
1 TGTAAGTTATGT--ATTA
**
94736630 TGTAAGTTATAAAATT-
1 TGTAAGTTAT-GTATTA
** **
94736646 TG-ATCTT-TAAATTA
1 TGTAAGTTATGTATTA
94736660 TGTAAGTT-TGTA-TA
1 TGTAAGTTATGTATTA
94736674 TGTAAGTTATGTATTA
1 TGTAAGTTATGTATTA
*
94736690 TATAAGTTATGTATTA
1 TGTAAGTTATGTATTA
94736706 AATAATATTT
Statistics
Matches: 142, Mismatches: 29, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
13 13 0.09
14 19 0.13
15 24 0.17
16 63 0.44
17 9 0.06
18 14 0.10
ACGTcount: A:0.34, C:0.03, G:0.15, T:0.48
Consensus pattern (16 bp):
TGTAAGTTATGTATTA
Found at i:94736529 original size:9 final size:9
Alignment explanation
Indices: 94736504--94736702 Score: 62
Period size: 9 Copynumber: 22.4 Consensus size: 9
94736494 CTTTAAATTC
94736504 TGTAAGTTA
1 TGTAAGTTA
94736513 TGT-A-TTA
1 TGTAAGTTA
94736520 TGTAAGTTA
1 TGTAAGTTA
* *
94736529 TGAAATTTGA
1 TGTAAGTT-A
* * *
94736539 TCTTTAAATTC
1 --TGTAAGTTA
94736550 TGTAAGTTA
1 TGTAAGTTA
94736559 TGT-A-TTA
1 TGTAAGTTA
*
94736566 TGTAAGTTT
1 TGTAAGTTA
* *
94736575 TGAAATTTGA
1 TGTAAGTT-A
* *
94736585 TCTTTAAATTA
1 --TGTAAGTTA
* *
94736596 TGTAACTCA
1 TGTAAGTTA
94736605 TGT-A-TTA
1 TGTAAGTTA
94736612 TGTAAGTTA
1 TGTAAGTTA
*
94736621 TGTAAATTA
1 TGTAAGTTA
94736630 TGTAAGTTA
1 TGTAAGTTA
** *
94736639 TAAAATTTGA
1 TGTAAGTT-A
* *
94736649 TCTTTAAATTA
1 --TGTAAGTTA
94736660 TGTAAGTT-
1 TGTAAGTTA
94736668 TGT-A--TA
1 TGTAAGTTA
94736674 TGTAAGTTA
1 TGTAAGTTA
94736683 TGT-A-TTA
1 TGTAAGTTA
*
94736690 TATAAGTTA
1 TGTAAGTTA
94736699 TGTA
1 TGTA
94736703 TTAAATAATA
Statistics
Matches: 137, Mismatches: 32, Indels: 42
0.65 0.15 0.20
Matches are distributed among these distances:
5 1 0.01
6 3 0.02
7 24 0.18
8 11 0.08
9 79 0.58
10 2 0.01
11 2 0.01
12 15 0.11
ACGTcount: A:0.34, C:0.03, G:0.15, T:0.48
Consensus pattern (9 bp):
TGTAAGTTA
Found at i:94736596 original size:30 final size:30
Alignment explanation
Indices: 94736562--94736667 Score: 99
Period size: 30 Copynumber: 3.4 Consensus size: 30
94736552 TAAGTTATGT
*
94736562 ATTATGTAAGTTTTGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGAAATTTGATCTTTAA
* * *
94736592 ATTATGTAACTCATG-TATTATGTAAGT-TATGTAA
1 ATTATGTAAGTTATGAAATT-TG--A-TCT-T-TAA
*
94736626 ATTATGTAAGTTATAAAATTTGATCTTTAA
1 ATTATGTAAGTTATGAAATTTGATCTTTAA
94736656 ATTATGTAAGTT
1 ATTATGTAAGTT
94736668 TGTATATGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
29 3 0.05
30 29 0.48
31 2 0.03
32 4 0.07
33 2 0.03
34 17 0.28
35 3 0.05
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (30 bp):
ATTATGTAAGTTATGAAATTTGATCTTTAA
Found at i:94736645 original size:64 final size:60
Alignment explanation
Indices: 94736550--94736699 Score: 219
Period size: 64 Copynumber: 2.4 Consensus size: 60
94736540 CTTTAAATTC
* *
94736550 TGTAAGTTATGTATTATGTAAGTTTTGAAATTTGATCTTTAAATTATGTAACTCATGTATTA
1 TGTAAGTTATGTATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAACT-ATGTA-TA
* *
94736612 TGTAAGTTATGTAAATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAAGTTTGTATA
1 TGTAAGTTATGT--ATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAACTATGTATA
*
94736674 TGTAAGTTATGTATTATATAAGTTAT
1 TGTAAGTTATGTATTATGTAAGTTAT
94736700 GTATTAAATA
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
60 13 0.16
62 26 0.32
63 4 0.05
64 38 0.47
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.48
Consensus pattern (60 bp):
TGTAAGTTATGTATTATGTAAGTTATAAAATTTGATCTTTAAATTATGTAACTATGTATA
Found at i:94736710 original size:16 final size:16
Alignment explanation
Indices: 94736676--94736710 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
94736666 TTTGTATATG
*
94736676 TAAGTTATGTATTATA
1 TAAGTTATGTATTAAA
94736692 TAAGTTATGTATTAAA
1 TAAGTTATGTATTAAA
94736708 TAA
1 TAA
94736711 TATTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (16 bp):
TAAGTTATGTATTAAA
Found at i:94737101 original size:10 final size:10
Alignment explanation
Indices: 94737086--94737111 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
94737076 TAATTTGATG
94737086 AGTAACAAAA
1 AGTAACAAAA
94737096 AGTAACAAAA
1 AGTAACAAAA
94737106 AGTAAC
1 AGTAAC
94737112 TTTTCATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (10 bp):
AGTAACAAAA
Found at i:94737192 original size:13 final size:13
Alignment explanation
Indices: 94737174--94737199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94737164 TTTGATTTTT
94737174 ATATTAAAATAAA
1 ATATTAAAATAAA
94737187 ATATTAAAATAAA
1 ATATTAAAATAAA
94737200 TTTAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATTAAAATAAA
Found at i:94737735 original size:23 final size:23
Alignment explanation
Indices: 94737687--94737739 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
94737677 GCTTGATAAG
* **
94737687 ATAAAGTATAATTTTTTTAACAT
1 ATAAAGTATAATATAATTAACAT
94737710 ATAAAGTATAATATAATTATACTAT
1 ATAAAGTATAATATAATTA-AC-AT
94737735 ATAAA
1 ATAAA
94737740 CACCAACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.64
24 2 0.08
25 7 0.28
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (23 bp):
ATAAAGTATAATATAATTAACAT
Found at i:94738003 original size:25 final size:25
Alignment explanation
Indices: 94737974--94738026 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
94737964 ACAGAAAACT
*
94737974 GGAGAAGCAGCAGAGGGATGCCGAC
1 GGAGAAGCAGAAGAGGGATGCCGAC
* *
94737999 GGAGATGTAGAAGAGGGATGCCGAC
1 GGAGAAGCAGAAGAGGGATGCCGAC
94738024 GGA
1 GGA
94738027 AATGTAGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.45, T:0.08
Consensus pattern (25 bp):
GGAGAAGCAGAAGAGGGATGCCGAC
Found at i:94738031 original size:25 final size:25
Alignment explanation
Indices: 94737985--94738047 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
94737975 GAGAAGCAGC
*
94737985 AGAGGGATGCCGACGGAGATGTAGA
1 AGAGGGATGCCGACGGAAATGTAGA
*
94738010 AGAGGGATGCCGACGGAAATGTAGC
1 AGAGGGATGCCGACGGAAATGTAGA
* *
94738035 AGAAGGCTGCCGA
1 AGAGGGATGCCGA
94738048 TGACGATGCG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.41, T:0.11
Consensus pattern (25 bp):
AGAGGGATGCCGACGGAAATGTAGA
Found at i:94739782 original size:357 final size:357
Alignment explanation
Indices: 94739121--94740190 Score: 2007
Period size: 357 Copynumber: 3.0 Consensus size: 357
94739111 TTATTTTATT
94739121 TTAAAA-ATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
1 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
94739185 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
66 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
94739250 TAGTTACATAGTTCAGAAACTTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAATAGAATAT
131 TAGTTACATAGTTCAGAAACTTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAATAGAATAT
94739315 AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
196 AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
94739380 CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
261 CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
94739445 CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
326 CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
94739477 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
1 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
94739542 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
66 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
94739607 TAGTTACATAGTTCAGAAACTTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAATAGAATAT
131 TAGTTACATAGTTCAGAAACTTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAATAGAATAT
94739672 AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
196 AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
94739737 CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
261 CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
94739802 CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
326 CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
94739834 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
1 TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
* * *
94739899 TTTCGTTCAGATGCAACTCGATAAACTTACTCCTAGTTATAAAACTGAGATGAACACTAAAATTT
66 TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
* * *
94739964 TAGTTACATAGTTCAGAAAATTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAACAGAAAAT
131 TAGTTACATAGTTCAGAAACTTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAATAGAATAT
** * * * *
94740029 AAAACTGAACCAGCTGTATCAATTGCTAATGCTGTAATAGCACATTCATTTAAACTCAAACATGA
196 AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
*
94740094 CACAGCATCTGAATGACACAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
261 CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
*
94740159 CTACTACTACTAAGAGTCTAAAGGAAGTACAA
326 CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
94740191 AGATTGAAAA
Statistics
Matches: 699, Mismatches: 14, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
356 6 0.01
357 693 0.99
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (357 bp):
TTAAAAGATGTGTTATTATCTAATTCATTGACAATTTATAGATTCATTGAATTTGCCTTCCAAAT
TTTCGTTCAGATGCAACTAGATAAATTTACTACTAGTTATAAAACTGAGATGAACACTAAAATTT
TAGTTACATAGTTCAGAAACTTCCTACATCTGTGTGGCTTTACCTAGAATTCTGTAATAGAATAT
AAAACCAAACAAGCTGCATCAATTGCTAATGCTGTAACAACACATTCATTTAAACTCAAACATGA
CACAGCATCTGAATGACATAGCATCAATTGCTAATACTTCAATGTAATCAATTGCTAATACTTTT
CTACTGCTACTAAGAGTCTAAAGGAAGTACAA
Found at i:94740797 original size:17 final size:17
Alignment explanation
Indices: 94740752--94740802 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
94740742 GGCAAATGGG
94740752 TTTGATTT-GGGGACAAT
1 TTTGATTTAGGGGA-AAT
* *
94740769 TTGGGGTTTAGGGGAAAT
1 TT-TGATTTAGGGGAAAT
94740787 TTTGATTTAGGGGAAA
1 TTTGATTTAGGGGAAA
94740803 ATAAGGGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 14 0.50
18 9 0.32
19 5 0.18
ACGTcount: A:0.25, C:0.02, G:0.35, T:0.37
Consensus pattern (17 bp):
TTTGATTTAGGGGAAAT
Found at i:94740804 original size:18 final size:18
Alignment explanation
Indices: 94740752--94740804 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
94740742 GGCAAATGGG
*
94740752 TTTGATTT-GGGGACAAT
1 TTTGATTTAGGGGAAAAT
* *
94740769 TTGGGGTTTAGGGG-AAAT
1 TT-TGATTTAGGGGAAAAT
94740787 TTTGATTTAGGGGAAAAT
1 TTTGATTTAGGGGAAAAT
94740805 AAGGGTTTCG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
17 11 0.39
18 13 0.46
19 4 0.14
ACGTcount: A:0.26, C:0.02, G:0.34, T:0.38
Consensus pattern (18 bp):
TTTGATTTAGGGGAAAAT
Found at i:94741625 original size:22 final size:22
Alignment explanation
Indices: 94741577--94741625 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
94741567 CATTTAATCA
94741577 ACTAACCCTTAAACCCTAATAC
1 ACTAACCCTTAAACCCTAATAC
* *
94741599 CCTAACCCTTAAAACCTTAA-AC
1 ACTAACCCTT-AAACCCTAATAC
94741621 ACTAA
1 ACTAA
94741626 TACCCTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (22 bp):
ACTAACCCTTAAACCCTAATAC
Found at i:94741640 original size:15 final size:15
Alignment explanation
Indices: 94741581--94741640 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
94741571 TAATCAACTA
94741581 ACCCTTAAACCCTAAT
1 ACCC-TAAACCCTAAT
*
94741597 ACCCT-AACCCTTAAA
1 ACCCTAAACCC-TAAT
* *
94741612 ACCTTAAACACTAAT
1 ACCCTAAACCCTAAT
*
94741627 ACCCTAAATCCTAA
1 ACCCTAAACCCTAA
94741641 ATACTTTAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 5 0.14
15 22 0.63
16 8 0.23
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (15 bp):
ACCCTAAACCCTAAT
Found at i:94741969 original size:21 final size:20
Alignment explanation
Indices: 94741945--94742014 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 20
94741935 GGTTTAAGGT
94741945 TTTAGAGTTTATGGATTACTA
1 TTTAGAGTTTATGG-TTACTA
* *
94741966 TTTAGGGTTTA-GG---GT-
1 TTTAGAGTTTATGGTTACTA
94741981 TTTAGAGTTTATAGGTTACTA
1 TTTAGAGTTTAT-GGTTACTA
*
94742002 TTTAGGGTTTATG
1 TTTAGAGTTTATG
94742015 TTTTTACAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 13
0.68 0.09 0.23
Matches are distributed among these distances:
15 10 0.26
16 1 0.03
17 2 0.05
20 4 0.11
21 21 0.55
ACGTcount: A:0.23, C:0.03, G:0.26, T:0.49
Consensus pattern (20 bp):
TTTAGAGTTTATGGTTACTA
Found at i:94742020 original size:36 final size:36
Alignment explanation
Indices: 94741929--94742012 Score: 134
Period size: 36 Copynumber: 2.3 Consensus size: 36
94741919 ATATGAATTT
94741929 TTTAGGGGTTTAAGGTTTTAGAGTTTATGGATTACTA
1 TTTA-GGGTTTAAGGTTTTAGAGTTTATGGATTACTA
*
94741966 TTTAGGGTTTAGGGTTTTAGAGTTTATAGG-TTACTA
1 TTTAGGGTTTAAGGTTTTAGAGTTTAT-GGATTACTA
94742002 TTTAGGGTTTA
1 TTTAGGGTTTA
94742013 TGTTTTTACA
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 39 0.87
37 6 0.13
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (36 bp):
TTTAGGGTTTAAGGTTTTAGAGTTTATGGATTACTA
Found at i:94742327 original size:82 final size:82
Alignment explanation
Indices: 94742261--94742646 Score: 496
Period size: 82 Copynumber: 4.7 Consensus size: 82
94742251 CGTTTGGGCT
*
94742261 TAAAAACGCCGCTATTGATCAG-TTTTAGTGGCGCTTGGACAAAAACGCCGCTATTTCTCCAGTT
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
*
94742325 TTTAGTGGCGTTTTGGA
66 TTTAGTGGCGTTTTAGA
94742342 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
*
94742407 TTTCA-AGGCGTTTTAGA
66 TTT-AGTGGCGTTTTAGA
* * * *
94742424 TAAAAACGCTGCTATTGATTAG-TTTTAGTGGCGTTTGGGA-AAAGACCGCCGCTATTTCCCCAG
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGACAAA-AACGCCGCTATTTCTCCAG
*
94742487 TTTTTAGTGGCG-TTTAGT
64 TTTTTAGTGGCGTTTTAGA
* * ** *
94742505 TAAAAACGCCGCTATTGATCTGTTTTTAGTGGCGTTTTAGACAAAAACGCCGCTATTGATCTA-T
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGACAAAAACGCCGCTATTTCTCCAGT
*
94742569 TTTTAGTGGCATTTTAGA
65 TTTTAGTGGCGTTTTAGA
* * * * * * *
94742587 CAAAAACGTCGTTATTGATCTGTTTTTAGTGGCGTTTTAGATAAAAACGCCGTTATTTCT
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGACAAAAACGCCGCTATTTCT
94742647 TCTTTTTTTG
Statistics
Matches: 269, Mismatches: 27, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
81 75 0.28
82 187 0.70
83 7 0.03
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (82 bp):
TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCTCCAGTT
TTTAGTGGCGTTTTAGA
Found at i:94742365 original size:41 final size:41
Alignment explanation
Indices: 94742261--94742643 Score: 404
Period size: 41 Copynumber: 9.4 Consensus size: 41
94742251 CGTTTGGGCT
* *
94742261 TAAAAACGCCGCTATTGATCAG-TTTTAGTGGCG-CTTGGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* ** *
94742300 CAAAAACGCCGCTATTTCTCCAGTTTTTAGTGGCGTTTTGGA
1 TAAAAACGCCGCTATTGAT-CAGTTTTTAGTGGCGTTTTAGA
*
94742342 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* ** *
94742382 CAAAAACGCCGCTATTTCTCCAGTTTTTCA-AGGCGTTTTAGA
1 TAAAAACGCCGCTATTGAT-CAGTTTTT-AGTGGCGTTTTAGA
* * **
94742424 TAAAAACGCTGCTATTGATTAG-TTTTAGTGGCGTTTGGGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* *** *
94742464 -AAAGACCGCCGCTATTTCCCCAGTTTTTAGTGGCG-TTTAGT
1 TAAA-AACGCCGCTA-TTGATCAGTTTTTAGTGGCGTTTTAGA
*
94742505 TAAAAACGCCGCTATTGATCTGTTTTTAGTGGCGTTTTAGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
* *
94742546 CAAAAACGCCGCTATTGATCTA-TTTTTAGTGGCATTTTAGA
1 TAAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGTTTTAGA
* * * *
94742587 CAAAAACGTCGTTATTGATCTGTTTTTAGTGGCGTTTTAGA
1 TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
*
94742628 TAAAAACGCCGTTATT
1 TAAAAACGCCGCTATT
94742644 TCTTCTTTTT
Statistics
Matches: 286, Mismatches: 44, Indels: 26
0.80 0.12 0.07
Matches are distributed among these distances:
39 20 0.07
40 62 0.22
41 148 0.52
42 56 0.20
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (41 bp):
TAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTTAGA
Found at i:94742586 original size:163 final size:163
Alignment explanation
Indices: 94742261--94742645 Score: 485
Period size: 163 Copynumber: 2.3 Consensus size: 163
94742251 CGTTTGGGCT
* * * *
94742261 TAAAAACGCCGCTATTGATCAGTTTTAGTGGCGCTTGGACAAAAACGCCGCTATTTCTCCAGTTT
1 TAAAAACGCTGCTATTGATTAGTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCCCCAGTTT
* *
94742326 TTAGTGGCGTTTTGGATAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACGC
66 TTAGTGGCGTTTTAGATAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTAGACAAAAACGC
** *
94742391 CGCTATTTCTCCAGTTTTTCAAGGCGTTTTAGA
131 CGCTATTGATCCAGTTTTTCAAGGCATTTTAGA
*
94742424 TAAAAACGCTGCTATTGATTAGTTTTAGTGGCGTTTGGGA-AAAGACCGCCGCTATTTCCCCAGT
1 TAAAAACGCTGCTATTGATTAGTTTTAGTGGCGTTT-GGACAAA-AACGCCGCTATTTCCCCAGT
* *
94742488 TTTTAGTGGCG-TTTAGTTAAAAACGCCGCTATTGATCTGTTTTTAGTGGCGTTTTAGACAAAAA
64 TTTTAGTGGCGTTTTAGATAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTAGACAAAAA
* *
94742552 CGCCGCTATTGATCTA-TTTTT-AGTGGCATTTTAGA
128 CGCCGCTATTGATCCAGTTTTTCA-AGGCATTTTAGA
* * * * *
94742587 CAAAAACG-TCGTTATTGATCT-GTTTTTAGTGGCGTTTTAGATAAAAACGCCGTTATTTC
1 TAAAAACGCT-GCTATTGAT-TAG-TTTTAGTGGCG-TTTGGACAAAAACGCCGCTATTTC
94742646 TTCTTTTTTT
Statistics
Matches: 194, Mismatches: 19, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
162 2 0.01
163 104 0.54
164 82 0.42
165 6 0.03
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (163 bp):
TAAAAACGCTGCTATTGATTAGTTTTAGTGGCGTTTGGACAAAAACGCCGCTATTTCCCCAGTTT
TTAGTGGCGTTTTAGATAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTAGACAAAAACGC
CGCTATTGATCCAGTTTTTCAAGGCATTTTAGA
Found at i:94757205 original size:96 final size:96
Alignment explanation
Indices: 94757041--94757233 Score: 377
Period size: 96 Copynumber: 2.0 Consensus size: 96
94757031 TGCATACATG
94757041 CTTGTAATTGATCCTGCATCTCTTTTTGCATTTGTTCCAATCTCTCTAACCTTTGGTCCATTGTC
1 CTTGTAATTGATCCTGCATCTCTTTTTGCATTTGTTCCAATCTCTCTAACCTTTGGTCCATTGTC
94757106 CTTGTTTTTCTCCTTGTACCGTAACGATGTT
66 CTTGTTTTTCTCCTTGTACCGTAACGATGTT
*
94757137 CTTGTAATTGATCCTGCATCTTTTTTTGCATTTGTTCCAATCTCTCTAACCTTTGGTCCATTGTC
1 CTTGTAATTGATCCTGCATCTCTTTTTGCATTTGTTCCAATCTCTCTAACCTTTGGTCCATTGTC
94757202 CTTGTTTTTCTCCTTGTACCGTAACGATGTT
66 CTTGTTTTTCTCCTTGTACCGTAACGATGTT
94757233 C
1 C
94757234 CAGGGTAACT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 96 1.00
ACGTcount: A:0.15, C:0.25, G:0.13, T:0.47
Consensus pattern (96 bp):
CTTGTAATTGATCCTGCATCTCTTTTTGCATTTGTTCCAATCTCTCTAACCTTTGGTCCATTGTC
CTTGTTTTTCTCCTTGTACCGTAACGATGTT
Found at i:94760878 original size:37 final size:37
Alignment explanation
Indices: 94760817--94760962 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
94760807 TACGTATGAT
* *
94760817 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
94760852 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
94760889 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
94760926 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
94760963 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:94760979 original size:46 final size:46
Alignment explanation
Indices: 94760926--94761194 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
94760916 TAAGTGTAGC
* **
94760926 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
94760972 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
94761018 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
94761070 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
94761116 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
94761168 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
94761195 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:94761045 original size:52 final size:52
Alignment explanation
Indices: 94760969--94761188 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
94760959 TAGCTAAAGC
* *
94760969 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
94761022 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
94761074 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
94761120 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
94761172 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
94761189 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:94761091 original size:98 final size:98
Alignment explanation
Indices: 94760926--94761194 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
94760916 TAAGTGTAGC
* * *
94760926 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
94760991 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
94761025 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
94761090 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
94761123 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
94761188 GATCAGA
66 GATCAGA
94761195 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:94764197 original size:25 final size:26
Alignment explanation
Indices: 94764148--94764202 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
94764138 AATGATGACG
94764148 AAAACAATAATAATAGCAATAGTA-T
1 AAAACAATAATAATAGCAATAGTATT
* *
94764173 AAAACGATAATAATA-CATATGGTATT
1 AAAACAATAATAATAGCA-ATAGTATT
94764199 AAAA
1 AAAA
94764203 TATATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 19 0.73
26 5 0.19
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAGTATT
Found at i:94766914 original size:29 final size:29
Alignment explanation
Indices: 94766872--94766932 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
94766862 ATGAGCTTGG
94766872 AATTTTATCCAAGCTCTCCTATATTTGTA
1 AATTTTATCCAAGCTCTCCTATATTTGTA
*
94766901 AATTTTATCTAAGCTCTCCTATATTTGTA
1 AATTTTATCCAAGCTCTCCTATATTTGTA
94766930 AAT
1 AAT
94766933 GACTAATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.46
Consensus pattern (29 bp):
AATTTTATCCAAGCTCTCCTATATTTGTA
Found at i:94767644 original size:15 final size:12
Alignment explanation
Indices: 94767604--94767643 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
94767594 TATAAAAAAA
94767604 ATTA-AAATTTT
1 ATTATAAATTTT
94767615 ATTATAAATTTT
1 ATTATAAATTTT
94767627 ATTATAAATTTT
1 ATTATAAATTTT
*
94767639 TTTAT
1 ATTAT
94767644 TTTAACTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 4 0.15
12 23 0.85
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTATAAATTTT
Found at i:94787288 original size:14 final size:14
Alignment explanation
Indices: 94787269--94787298 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
94787259 AGGTTGTTTC
94787269 CATGATGATTTTTA
1 CATGATGATTTTTA
94787283 CATGATGATTTTTA
1 CATGATGATTTTTA
94787297 CA
1 CA
94787299 AAATCTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (14 bp):
CATGATGATTTTTA
Found at i:94793710 original size:20 final size:20
Alignment explanation
Indices: 94793646--94793700 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
94793636 ACATCAGTAT
94793646 TTTTATCTTGAATTTCAGGA
1 TTTTATCTTGAATTTCAGGA
*
94793666 TTTTATCCTGAATTTCAGGA
1 TTTTATCTTGAATTTCAGGA
94793686 TTTTATCTTGAATTT
1 TTTTATCTTGAATTT
94793701 TAATATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.53
Consensus pattern (20 bp):
TTTTATCTTGAATTTCAGGA
Found at i:94797290 original size:2 final size:2
Alignment explanation
Indices: 94797283--94797308 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
94797273 CGGAGAATAA
94797283 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
94797309 CACTTAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94797816 original size:31 final size:31
Alignment explanation
Indices: 94797781--94797846 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
94797771 TAAAGAACTA
94797781 AATTTAACCATCAACATTTAAAAAAAAGTCG
1 AATTTAACCATCAACATTTAAAAAAAAGTCG
* * * * * *
94797812 AATTTAATCATTAACTTTTTAAAAAGAGTTG
1 AATTTAACCATCAACATTTAAAAAAAAGTCG
94797843 AATT
1 AATT
94797847 GTTTTTTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.35
Consensus pattern (31 bp):
AATTTAACCATCAACATTTAAAAAAAAGTCG
Found at i:94798504 original size:18 final size:18
Alignment explanation
Indices: 94798468--94798504 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
94798458 TGAGTTTTTG
* *
94798468 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCAAAT
94798486 AATTCGAATAAATCAAAT
1 AATTCGAATAAATCAAAT
94798504 A
1 A
94798505 TCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (18 bp):
AATTCGAATAAATCAAAT
Found at i:94798568 original size:22 final size:22
Alignment explanation
Indices: 94798538--94798594 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
94798528 TTACCCCAAA
*
94798538 CTCCC-AAACTTTTTTACTTTTC
1 CTCCCAAAACTTTTTCAC-TTTC
* *
94798560 C-CTCAAAACTTTCTCACTTTC
1 CTCCCAAAACTTTTTCACTTTC
94798581 CTCCCAAAACTTTT
1 CTCCCAAAACTTTT
94798595 ACTCCTCTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (22 bp):
CTCCCAAAACTTTTTCACTTTC
Found at i:94798759 original size:30 final size:30
Alignment explanation
Indices: 94798708--94798780 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
94798698 AAAGTTTTTT
*
94798708 ATTTTCCCCCAAAATTTTTACTCCC-TCCC
1 ATTTTCCCCCAAAACTTTTACTCCCTTCCC
94798737 ATTTTCCCCCTAAAACTTTTACTCCCTTCCC
1 ATTTTCCCCC-AAAACTTTTACTCCCTTCCC
*
94798768 ATCTTACCCCCAA
1 AT-TTTCCCCCAA
94798781 TCTACCCCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 10 0.26
30 14 0.36
31 8 0.21
32 7 0.18
ACGTcount: A:0.22, C:0.42, G:0.00, T:0.36
Consensus pattern (30 bp):
ATTTTCCCCCAAAACTTTTACTCCCTTCCC
Found at i:94801193 original size:15 final size:16
Alignment explanation
Indices: 94801159--94801192 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
94801149 TACCATGTGC
*
94801159 TTTATTTTTTTATATT
1 TTTATTTTTTAATATT
94801175 TTTATTTTTTAATATT
1 TTTATTTTTTAATATT
94801191 TT
1 TT
94801193 ACTATGCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTTTAATATT
Found at i:94802615 original size:13 final size:13
Alignment explanation
Indices: 94802597--94802625 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
94802587 TTTAATAATG
94802597 AAAAGTTTTCTTC
1 AAAAGTTTTCTTC
94802610 AAAAGTTTTCTTC
1 AAAAGTTTTCTTC
94802623 AAA
1 AAA
94802626 TACCAAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (13 bp):
AAAAGTTTTCTTC
Found at i:94805636 original size:11 final size:11
Alignment explanation
Indices: 94805620--94805644 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94805610 TATATTTGTG
94805620 TAAATAATAAA
1 TAAATAATAAA
94805631 TAAATAATAAA
1 TAAATAATAAA
94805642 TAA
1 TAA
94805645 TAAATGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAATAATAAA
Found at i:94808890 original size:32 final size:32
Alignment explanation
Indices: 94808854--94808915 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
94808844 TTAGACAGTC
* *
94808854 TGAATTATCAAATTAAATTAATTAATTTATCA
1 TGAATTATCAAATTAAAGTAATCAATTTATCA
* * *
94808886 TGAATTGTTAAATTCAAGTAATCAATTTAT
1 TGAATTATCAAATTAAAGTAATCAATTTAT
94808916 AAGTTTATGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (32 bp):
TGAATTATCAAATTAAAGTAATCAATTTATCA
Found at i:94816608 original size:20 final size:20
Alignment explanation
Indices: 94816583--94816620 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94816573 ACATAATTAA
*
94816583 ATTTTTTATATTATTTATTT
1 ATTTTTGATATTATTTATTT
*
94816603 ATTTTTGGTATTATTTAT
1 ATTTTTGATATTATTTAT
94816621 ACCGGTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (20 bp):
ATTTTTGATATTATTTATTT
Found at i:94818193 original size:24 final size:24
Alignment explanation
Indices: 94818071--94818221 Score: 117
Period size: 26 Copynumber: 6.2 Consensus size: 24
94818061 ACAAAAGCAT
* *
94818071 ATATAAAACAATTTGAAGTAAATA
1 ATATAAAACAATTTAAAATAAATA
**
94818095 GCATAAAACAATTTAAAATAAATA
1 ATATAAAACAATTTAAAATAAATA
* * *
94818119 ATGTGTAAAACAAATTAAAACAAATA
1 A--TATAAAACAATTTAAAATAAATA
*
94818145 ATATACGAAGCAATTTAAAATAAATA
1 ATATA--AAACAATTTAAAATAAATA
* **
94818171 ATATAAGACAATTTAAAGCAAAT-
1 ATATAAAACAATTTAAAATAAATA
* * * *
94818194 A-AGAAGACAATTTTAAATGAATA
1 ATATAAAACAATTTAAAATAAATA
94818217 ATATA
1 ATATA
94818222 TAGAAAAACA
Statistics
Matches: 98, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
22 16 0.16
23 2 0.02
24 39 0.40
26 41 0.42
ACGTcount: A:0.59, C:0.07, G:0.08, T:0.26
Consensus pattern (24 bp):
ATATAAAACAATTTAAAATAAATA
Found at i:94818891 original size:13 final size:13
Alignment explanation
Indices: 94818875--94818907 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
94818865 AAAATTGGAA
94818875 ATTGAGATTGAAG
1 ATTGAGATTGAAG
*
94818888 ATTGGGATTGAAG
1 ATTGAGATTGAAG
94818901 ATTGAGA
1 ATTGAGA
94818908 ATTTAGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.30
Consensus pattern (13 bp):
ATTGAGATTGAAG
Found at i:94818905 original size:7 final size:7
Alignment explanation
Indices: 94818812--94818879 Score: 102
Period size: 7 Copynumber: 9.7 Consensus size: 7
94818802 AGTATTGAGG
94818812 ATTGAAA
1 ATTGAAA
*
94818819 ATTCAAA
1 ATTGAAA
94818826 ATTGAAA
1 ATTGAAA
94818833 ATTGAAA
1 ATTGAAA
94818840 ATTGAAA
1 ATTGAAA
94818847 ATTGAAA
1 ATTGAAA
94818854 ATTGAAA
1 ATTGAAA
94818861 ATAT-AAA
1 AT-TGAAA
*
94818868 ATTGGAA
1 ATTGAAA
94818875 ATTGA
1 ATTGA
94818880 GATTGAAGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
6 1 0.02
7 53 0.96
8 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.13, T:0.29
Consensus pattern (7 bp):
ATTGAAA
Found at i:94819378 original size:31 final size:30
Alignment explanation
Indices: 94819336--94819411 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 30
94819326 TCCGTGTTCC
* *
94819336 TATTTTTGTCATTCATTTTTAAAAAAATTGT
1 TATTTTAGTCATTC-TTGTTAAAAAAATTGT
* * *
94819367 TATTTTAGTCATTCTTGTTAGATAAGTTGT
1 TATTTTAGTCATTCTTGTTAAAAAAATTGT
94819397 TAATTTTAGTCATTC
1 T-ATTTTAGTCATTC
94819412 CCGTTTGACA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 13 0.33
31 26 0.67
ACGTcount: A:0.28, C:0.08, G:0.11, T:0.54
Consensus pattern (30 bp):
TATTTTAGTCATTCTTGTTAAAAAAATTGT
Found at i:94819425 original size:31 final size:31
Alignment explanation
Indices: 94819363--94819437 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
94819353 TTTAAAAAAA
** *
94819363 TTGTT-ATTTTAGTCATTCTTGTTAGATAAG
1 TTGTTAATTTTAGTCATTCCCGTTAGACAAG
*
94819393 TTGTTAATTTTAGTCATTCCCGTTTGACAAG
1 TTGTTAATTTTAGTCATTCCCGTTAGACAAG
* *
94819424 TTGTCAAATTTAGT
1 TTGTTAATTTTAGT
94819438 TACTCTACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
30 5 0.13
31 33 0.87
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.49
Consensus pattern (31 bp):
TTGTTAATTTTAGTCATTCCCGTTAGACAAG
Found at i:94820873 original size:52 final size:53
Alignment explanation
Indices: 94820775--94820913 Score: 176
Period size: 52 Copynumber: 2.6 Consensus size: 53
94820765 GTTTTGAATA
*
94820775 AATTGTTATGA-TAGAATATTATTTTTTTAAT-TAATTATTTATATATTTAAATC
1 AATTGTTAT-ATTAAAATATTA-TTTTTTAATCTAATTATTTATATATTTAAATC
*
94820828 AATTGTTATATTAAAATATTATTTTTTAATCT-TTTATTTATATATTTAAATC
1 AATTGTTATATTAAAATATTATTTTTTAATCTAATTATTTATATATTTAAATC
* *
94820880 AATTGTTACAATGAAATATATATATTTTTTAATC
1 AATTGTTA-TATTAAA-ATAT-TATTTTTTAATC
94820914 GATTGTTATA
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
52 37 0.48
53 24 0.31
54 4 0.05
55 12 0.16
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (53 bp):
AATTGTTATATTAAAATATTATTTTTTAATCTAATTATTTATATATTTAAATC
Found at i:94820924 original size:52 final size:50
Alignment explanation
Indices: 94820811--94820926 Score: 137
Period size: 52 Copynumber: 2.2 Consensus size: 50
94820801 TTAATTAATT
* * *
94820811 ATTTATATATTTAAATCAATTGTTATATTAAAATATTATTTTTTAATCTTTT
1 ATTTATATATTTAAATCAATTGTTAAATGAAAATATTATTTTTTAATC--TG
94820863 ATTTATATATTTAAATCAATTGTTACAATGAAATATATATATTTTTTAATC-G
1 ATTTATATATTTAAATCAATTGTTA-AATGAAA-ATAT-TATTTTTTAATCTG
94820915 ATTGT-TATATTT
1 ATT-TATATATTT
94820927 GTCAGTTATT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
52 35 0.61
53 6 0.11
54 4 0.07
55 12 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (50 bp):
ATTTATATATTTAAATCAATTGTTAAATGAAAATATTATTTTTTAATCTG
Found at i:94822034 original size:28 final size:28
Alignment explanation
Indices: 94821994--94822050 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
94821984 AGCTCTCTAC
94821994 TAAGAAAGAGGTCCTCGGTTCAGAATTG
1 TAAGAAAGAGGTCCTCGGTTCAGAATTG
94822022 TAAGAAAGAGGTCCTCGGTTCAGAATTG
1 TAAGAAAGAGGTCCTCGGTTCAGAATTG
94822050 T
1 T
94822051 GCCATGCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (28 bp):
TAAGAAAGAGGTCCTCGGTTCAGAATTG
Found at i:94822802 original size:15 final size:16
Alignment explanation
Indices: 94822776--94822805 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94822766 TCTTAAGCAT
94822776 CTCAGTGAAGATGACA
1 CTCAGTGAAGATGACA
94822792 CTCAG-GAAGATGAC
1 CTCAGTGAAGATGAC
94822806 GATACCCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.20, G:0.27, T:0.17
Consensus pattern (16 bp):
CTCAGTGAAGATGACA
Found at i:94833186 original size:45 final size:45
Alignment explanation
Indices: 94833137--94833288 Score: 277
Period size: 45 Copynumber: 3.4 Consensus size: 45
94833127 ACAGTCCAAT
94833137 TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
1 TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
94833182 TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
1 TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
* *
94833227 TGGCGAACAACATAAATAGCGAACAATTCAATTGGCAAACACACA
1 TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
*
94833272 TGGCGAACAACATAAAT
1 TGGCAAACAACATAAAT
94833289 GGCAAACACA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 105 1.00
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (45 bp):
TGGCAAACAACATAAATAGCGAACAATTCAATTGGCAAACACACG
Found at i:94848401 original size:38 final size:41
Alignment explanation
Indices: 94848359--94848440 Score: 109
Period size: 41 Copynumber: 2.1 Consensus size: 41
94848349 TTAATTTTTT
*
94848359 TAAAAATATAA-TAATTTA-ATTTAATTT-TT-TAAAAATTA
1 TAAAAATATAACAAATTTATATTT-ATTTATTATAAAAATTA
*
94848397 TAAAAATATAACAAATTTATATTTTTTTATTATAAAAATTA
1 TAAAAATATAACAAATTTATATTTATTTATTATAAAAATTA
94848438 TAA
1 TAA
94848441 TTTAATTCCG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
38 11 0.29
39 9 0.24
40 6 0.16
41 12 0.32
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (41 bp):
TAAAAATATAACAAATTTATATTTATTTATTATAAAAATTA
Found at i:94848413 original size:29 final size:29
Alignment explanation
Indices: 94848354--94848414 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
94848344 ATATTTTAAT
* * **
94848354 TTTTTTAAAAATATAATAATTTAATTTAA
1 TTTTTTAAAAATATAAAAATATAATCAAA
94848383 TTTTTTAAAAATTATAAAAATATAA-CAAA
1 TTTTTTAAAAA-TATAAAAATATAATCAAA
94848412 TTT
1 TTT
94848415 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (29 bp):
TTTTTTAAAAATATAAAAATATAATCAAA
Found at i:94853128 original size:23 final size:22
Alignment explanation
Indices: 94853077--94853130 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
94853067 ATACTACATC
94853077 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
94853096 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
94853119 AATATGTACATA
1 AATATGTACATA
94853131 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:94853177 original size:22 final size:24
Alignment explanation
Indices: 94853093--94853178 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
94853083 TACATATATA
* *
94853093 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
94853116 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
94853141 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
94853164 -AAGATATATACATAA
1 AAAAATATATACATAA
94853179 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:94853227 original size:27 final size:27
Alignment explanation
Indices: 94853192--94853257 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 27
94853182 AACATGTAGA
* *
94853192 AAAATATATATATAAATAATATAATAT
1 AAAAGATATATATAAATAAAATAATAT
* *
94853219 TAAAG--ATATATAAATAAAATAGTAT
1 AAAAGATATATATAAATAAAATAATAT
*
94853244 AAAATATATATATA
1 AAAAGATATATATA
94853258 TACGTAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
25 21 0.68
27 10 0.32
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (27 bp):
AAAAGATATATATAAATAAAATAATAT
Found at i:94853233 original size:25 final size:25
Alignment explanation
Indices: 94853199--94853334 Score: 88
Period size: 25 Copynumber: 5.6 Consensus size: 25
94853189 AGAAAAATAT
94853199 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
94853224 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
94853249 ATATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-A--TAATATAATATTAAAG
** *
94853277 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
94853299 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
94853322 AAATAT-AATAATA
1 ATATATAAATAATA
94853335 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 28 0.33
26 1 0.01
27 6 0.07
28 1 0.01
29 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:94853288 original size:23 final size:24
Alignment explanation
Indices: 94853199--94853291 Score: 77
Period size: 23 Copynumber: 3.9 Consensus size: 24
94853189 AGAAAAATAT
94853199 ATATATAAATAATA--TAATATTAAA
1 ATATATAAAT-ATACCTAATA-TAAA
** *
94853223 GATATATAAATA-AAATAGTATAAA
1 -ATATATAAATATACCTAATATAAA
* *
94853247 ATATATATATATACGTAATATAAA
1 ATATATAAATATACCTAATATAAA
*
94853271 ATTTA-AAATATACCTAATATA
1 ATATATAAATATACCTAATATA
94853292 TTAAAAGAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
23 25 0.44
24 18 0.32
25 14 0.25
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (24 bp):
ATATATAAATATACCTAATATAAA
Found at i:94853866 original size:30 final size:30
Alignment explanation
Indices: 94853817--94853930 Score: 158
Period size: 30 Copynumber: 3.8 Consensus size: 30
94853807 TAGGTACAAG
* *
94853817 TGGTGGT-GAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
94853846 TGGTGGAGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
* * *
94853876 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGC
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
94853906 TGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGTGGAAAAAGAGTGGCTAGT
94853931 TGAGAAAGTT
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
29 6 0.08
30 69 0.92
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Done.