Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 298 of 318
Found at i:94853910 original size:60 final size:59
Alignment explanation
Indices: 94853817--94853930 Score: 192
Period size: 60 Copynumber: 1.9 Consensus size: 59
94853807 TAGGTACAAG
*
94853817 TGGTGGTGAAAAGGTGTGGCTAGTGGAGTTGGTGGAGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGAAAAGGTGTGGCTAGTGGAGCTGGTGGAGGAAAAAGAGTGGCTAGTGGAGT
* *
94853876 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGCTGGTGGTGGAAAATGAGTGGCTAGT
1 TGGTGGT-GAAAAGGTGTGGCTAGTGGAGCTGGTGGAGGAAAAAGAGTGGCTAGT
94853931 TGAGAAAGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 7 0.14
60 44 0.86
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (59 bp):
TGGTGGTGAAAAGGTGTGGCTAGTGGAGCTGGTGGAGGAAAAAGAGTGGCTAGTGGAGT
Found at i:94854722 original size:73 final size:73
Alignment explanation
Indices: 94854641--94855224 Score: 311
Period size: 73 Copynumber: 7.5 Consensus size: 73
94854631 TGTGAACCCA
*
94854641 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTAA-AACAGAAATTTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAACAACAGAAA-TTAAAAATACCTCAG
94854705 CGTGTCCTG
65 CGTGTCCTG
* *
94854714 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTAACAACAGAAATTAAAAATACCTCA
94854779 GCGTGTCCTG
64 GCGTGTCCTG
* * *
94854789 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTAAC-AACAGAAATT-AA-AA-A-TA
** * * *
94854854 ATTGAAAAGACCTCAG-CATG
59 CCT---CAG-CGT--GTCCTG
* * * * * *
94854874 TGAGC-CGAGGCTCAACTCACCTCTCACAATATGAGTT-AATTTTTGACAAACAGAAATTAAAAT
1 AG-GCTC-A-ACT-----CACCTCTCGCAATATGAGTTGATTTTTTAAC-AACAGAAATTAAAAA
* *
94854937 TACCTCAGTGTGTCCCG
57 TACCTCAGCGTGTCCTG
* * * * **
94854954 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTGAAAACCAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAACAACAGAAATT-AAAA--A-TACCT
* *** *
94855019 GAAAATACCTCAGCGTG
62 CAGCGT--GTC--C-TG
* * * * * ** * **
94855036 TGAGC-CAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACC
1 AG-GCTCAA----C---TCACCTCTCGCAATATGAGTTGATTTTTTAACAACAGAAATTAAAAAT
94855100 ACCTCAGCGTGTCCTG
58 ACCTCAGCGTGTCCTG
* * * *
94855116 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACTAACAAAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAC-AACAGAAATTAAAAATACCTCAG
*
94855180 C--GTCTTG
65 CGTGTCCTG
*
94855187 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
94855225 TTGAAACATA
Statistics
Matches: 388, Mismatches: 78, Indels: 91
0.70 0.14 0.16
Matches are distributed among these distances:
71 36 0.09
72 9 0.02
73 99 0.26
74 10 0.03
75 71 0.18
76 19 0.05
77 5 0.01
78 4 0.01
79 8 0.02
80 12 0.03
81 3 0.01
82 7 0.02
83 6 0.02
84 2 0.01
85 11 0.03
86 5 0.01
87 4 0.01
88 6 0.02
89 52 0.13
91 1 0.00
92 18 0.05
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAACAACAGAAATTAAAAATACCTCAGC
GTGTCCTG
Found at i:94854796 original size:75 final size:75
Alignment explanation
Indices: 94854641--94854845 Score: 326
Period size: 75 Copynumber: 2.7 Consensus size: 75
94854631 TGTGAACCCA
* *
94854641 AGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTTAA-AACAGAAATTTAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAA-TTGAAAATACCTC
94854703 AGCGTGTCCTG
65 AGCGTGTCCTG
*
94854714 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATACCTCA
94854779 GCGTGTCCTG
66 GCGTGTCCTG
* *
94854789 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAC-AACAGAAATTGAA
94854846 GAACAGAAAT
Statistics
Matches: 123, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
73 31 0.25
75 71 0.58
76 21 0.17
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATACCTCA
GCGTGTCCTG
Found at i:94854851 original size:14 final size:14
Alignment explanation
Indices: 94854832--94854859 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94854822 TTTTTTTTAC
94854832 GAACAGAAATTGAA
1 GAACAGAAATTGAA
94854846 GAACAGAAATTGAA
1 GAACAGAAATTGAA
94854860 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:94855008 original size:14 final size:14
Alignment explanation
Indices: 94854989--94855023 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
94854979 GAGTCGATTT
94854989 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
94855003 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
94855017 TTGAAAA
1 TTGAAAA
94855024 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:94855058 original size:162 final size:160
Alignment explanation
Indices: 94854679--94855170 Score: 648
Period size: 162 Copynumber: 3.0 Consensus size: 160
94854669 TTGATTTTTT
*
94854679 AAAACAGAAATTTAAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
* * *
94854741 GTTGATTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GTT-A-ATTTTTGAA-AACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * *
94854806 AGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTG
126 CGCAATATGAGTTGA---TTTTTGACAAACAGAAATTG
* * *
94854844 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
94854909 TTAATTTTTGACAAACAGAAATTAAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
94854974 AATATGAGTCGATTTTTGAAAAACAGAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
* *
94855006 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
94855071 CTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
94855136 AATATGAGTTGATTTTTGACTAACAAAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
94855168 AAA
1 AAA
94855171 TTACCTCAGC
Statistics
Matches: 290, Mismatches: 31, Indels: 15
0.86 0.09 0.04
Matches are distributed among these distances:
161 2 0.01
162 162 0.56
165 84 0.29
166 10 0.03
167 30 0.10
168 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (160 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTGAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGACAAACAGAAATTG
Found at i:94855078 original size:89 final size:87
Alignment explanation
Indices: 94854916--94855100 Score: 225
Period size: 89 Copynumber: 2.1 Consensus size: 87
94854906 GAGTTAATTT
* *
94854916 TTGACAAA-CAGAAATTAAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTAAAATTACCTCAGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATG
*
94854980 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
94855003 TTGAAAACCAGAAATTGAAAA-TACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAACCAGAAATT-AAAATTACCTCA--GTGTGACCCAAGGCTCAACTCACCTCTCGCAATA
** *
94855067 TGAG-CTAATTTTTGATGAACATAAA
63 TGAGTC-AATTTTTGAAAAACAGAAA
94855092 TT-AAAACCA
1 TTGAAAACCA
94855101 CCTCAGCGTG
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
86 3 0.04
87 19 0.22
88 12 0.14
89 51 0.60
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTAAAATTACCTCAGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:94855174 original size:235 final size:232
Alignment explanation
Indices: 94854852--94855382 Score: 617
Period size: 235 Copynumber: 2.3 Consensus size: 232
94854842 TGAAGAACAG
* ** * *
94854852 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTAATTTT
1 AAATTGAAAACACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
94854917 TGACAAACAGAAATTAAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
64 TGACAAACAAAAATTAAAATTACCTCA--GCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
94854982 TCGA-TTTTTGAAAAACAGAAATT--GAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCC-A
127 TCGATTTTTTGAAAAACAGAAATTAAAAAAACGA-AAATTGAAAATACCTCAGCGTGT---CCTA
* * ** *
94855043 AGGCTCAACTCACCTCTTGCAATATGAGCT-AATTTTTGATGA-ACAT
188 AGGCTCAACTCACCTCTCGCAATATGAGCTGAA--ATT-AAAACACAA
* *
94855089 AAATT-AAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAA-CACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * ** * *
94855153 GACTAACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTG
65 GACAAACAAAAATTAAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCG
*** * *
94855218 ATTTTTTTTGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
130 ATTTTTTGAAAAACAGAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCA
*
94855283 ACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAA
195 ACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAA
* * * *
94855321 AAATTGAAAATATCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTT
1 AAATTGAAAACACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
94855383 GAAAAAGTAG
Statistics
Matches: 253, Mismatches: 33, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
231 2 0.01
232 58 0.23
233 67 0.26
234 17 0.07
235 86 0.34
236 10 0.04
237 13 0.05
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (232 bp):
AAATTGAAAACACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
ACAAACAAAAATTAAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
TTTTTTGAAAAACAGAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAA
CTCACCTCTCGCAATATGAGCTGAAATTAAAACACAA
Found at i:94855352 original size:72 final size:73
Alignment explanation
Indices: 94855234--94855375 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 73
94855224 TTTGAAACAT
* * *
94855234 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
94855299 ATGAGTTG
66 ATGAGTTG
* * *
94855307 AAATT-AAAACACAAAAATTGAAAATATCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
94855371 ATGAG
66 ATGAG
94855376 CTGATTTGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 58 0.92
73 5 0.08
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:94865541 original size:13 final size:13
Alignment explanation
Indices: 94865523--94865547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94865513 TGAACAACGT
94865523 AAATTGAAAATAG
1 AAATTGAAAATAG
94865536 AAATTGAAAATA
1 AAATTGAAAATA
94865548 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:94865666 original size:54 final size:54
Alignment explanation
Indices: 94865567--94865672 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
94865557 GACCTGAGGC
*
94865567 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTATAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAG-ATAAATTGAAAAGGT
* *
94865621 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG-TAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGATAAATTGAAAA
94865673 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 34 0.74
55 9 0.20
56 3 0.07
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGATAAATTGAAAAGGT
Found at i:94865799 original size:72 final size:71
Alignment explanation
Indices: 94865663--94865828 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
94865653 TGAACAACGT
* * * *
94865663 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
94865728 GAGTTG
66 GAGTTG
* *
94865734 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGTAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
94865799 TGAGTTG
65 TGAGTTG
**
94865806 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
94865829 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 12 0.14
72 69 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:94875866 original size:7 final size:7
Alignment explanation
Indices: 94875854--94875894 Score: 64
Period size: 7 Copynumber: 5.6 Consensus size: 7
94875844 ATAATAAAAT
94875854 ATATAAA
1 ATATAAA
94875861 ATATAAA
1 ATATAAA
94875868 ATATAAA
1 ATATAAA
94875875 ATATTAAA
1 ATA-TAAA
94875883 ATATCAAA
1 ATAT-AAA
94875891 ATAT
1 ATAT
94875895 TAGAATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 18 0.56
8 14 0.44
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:94875877 original size:23 final size:23
Alignment explanation
Indices: 94875847--94875894 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
94875837 GATGGGAATA
94875847 ATAAAATATATAAAATAT-AAAAT
1 ATAAAATAT-TAAAATATCAAAAT
94875870 ATAAAATATTAAAATATCAAAAT
1 ATAAAATATTAAAATATCAAAAT
94875893 AT
1 AT
94875895 TAGAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
ATAAAATATTAAAATATCAAAAT
Found at i:94875884 original size:8 final size:8
Alignment explanation
Indices: 94875843--94875901 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
94875833 CAATGATGGG
*
94875843 AATAATAA
1 AATATTAA
94875851 AATATATAA
1 AATAT-TAA
94875860 AATA-TAA
1 AATATTAA
94875867 AATA-TAA
1 AATATTAA
94875874 AATATTAA
1 AATATTAA
*
94875882 AATATCAA
1 AATATTAA
*
94875890 AATATTAG
1 AATATTAA
94875898 AATA
1 AATA
94875902 ATAATAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
7 14 0.31
8 24 0.53
9 7 0.16
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:94875912 original size:31 final size:30
Alignment explanation
Indices: 94875843--94875912 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
94875833 CAATGATGGG
*
94875843 AATAA-TAAAATATATAAAATATAAAATAT
1 AATAATTAAAATATACAAAATATAAAATAT
* *
94875872 AAAATATTAAAATAT-CAAAATATTAGAATAAT
1 AATA-ATTAAAATATACAAAATA-TAAAAT-AT
94875904 AATAATTAA
1 AATAATTAA
94875913 TATTGACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 3 0.09
30 7 0.21
31 18 0.55
32 5 0.15
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (30 bp):
AATAATTAAAATATACAAAATATAAAATAT
Found at i:94876066 original size:23 final size:22
Alignment explanation
Indices: 94876015--94876068 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
94876005 ATACTACATC
94876015 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
94876034 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
94876057 AATATGTACATA
1 AATATGTACATA
94876069 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:94876115 original size:22 final size:24
Alignment explanation
Indices: 94876031--94876116 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
94876021 TACATATATA
* *
94876031 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
94876054 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
94876079 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
94876102 -AAGATATATACATAA
1 AAAAATATATACATAA
94876117 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:94876171 original size:25 final size:25
Alignment explanation
Indices: 94876137--94876270 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
94876127 AGAAAAATAT
94876137 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
94876162 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
94876187 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
94876213 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
94876235 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
94876258 AAATAT-AATAATA
1 ATATATAAATAATA
94876271 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:94876787 original size:30 final size:30
Alignment explanation
Indices: 94876751--94876925 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
94876741 TAGGTACAAG
* *
94876751 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
94876781 TGGTGGTGGAAAAAGAGTGGCTAGTGGAAT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
94876811 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
94876841 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
94876871 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
94876901 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
94876926 TGAGAAAAGT
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 133 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:94876844 original size:60 final size:60
Alignment explanation
Indices: 94876751--94876925 Score: 323
Period size: 60 Copynumber: 2.9 Consensus size: 60
94876741 TAGGTACAAG
*
94876751 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAAT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAAT
*
94876811 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAAT
*
94876871 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
94876926 TGAGAAAAGT
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 112 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAAT
Found at i:94882747 original size:96 final size:98
Alignment explanation
Indices: 94882609--94882961 Score: 446
Period size: 96 Copynumber: 3.6 Consensus size: 98
94882599 AAAATACATG
* * * *
94882609 TTAAAAAAAAAATT-GGTGTTGGCTTGTTAATGGCCGGCACCAAGTACAAAAAAAATCAA-TTTT
1 TTAAAAAAAAAATTGGGTGCTAGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAATCAATTTTT
*
94882672 AAAAAAAAATTTTGCTCTCCTAAAATACGAG-T
66 AAAAAAAAATTTTGCTCTCCAAAAATACGAGTT
** * *
94882704 TTAAAAAAAATTTTGGGTGCTGGCCTGTCAATGACCGGCACCAAGTAC-AAAAAAATCAATTTTT
1 TTAAAAAAAAAATTGGGTGCTAGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAATCAATTTTT
** *
94882768 TTAAAAAAA-TTCGCTCTCCAAAAATACGAGTT
66 AAAAAAAAATTTTGCTCTCCAAAAATACGAGTT
* * *
94882800 TTAAAAAAAAAATTGGGTGCTAGCTTGTCAATGGCCGACACCCAGTACCAAAAAAAAATTCAAAT
1 TTAAAAAAAAAATTGGGTGCTAGCCTGTCAATGGCCGGCACCAAGTA-C-AAAAAAAA-TC-AA-
*
94882865 TTTTTTTTAAAAAAAATTTTTGCTCTCCAAAAATACGAGTT
61 ---TTTTTAAAAAAAAATTTTGCTCTCCAAAAATACGAGTT
*
94882906 TTAAAAAAAAAATTGGGTGCTAGCCTGTCAATGGCCGGCACCAGGTACAAAAAAAA
1 TTAAAAAAAAAATTGGGTGCTAGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAA
94882962 ATTCAAGTTT
Statistics
Matches: 220, Mismatches: 25, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
95 42 0.19
96 81 0.37
97 1 0.00
99 7 0.03
100 2 0.01
101 2 0.01
104 8 0.04
105 12 0.05
106 65 0.30
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (98 bp):
TTAAAAAAAAAATTGGGTGCTAGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAATCAATTTTT
AAAAAAAAATTTTGCTCTCCAAAAATACGAGTT
Found at i:94882904 original size:106 final size:104
Alignment explanation
Indices: 94882668--94883022 Score: 442
Period size: 106 Copynumber: 3.4 Consensus size: 104
94882658 AAAAAATCAA
* * ** *
94882668 TTTTAAAAAAAAATTTTGCTCTCCTAAAATACGAGTTTAAAAAAAATTTTGGGTGCTGGCCTGTC
1 TTTTAAAAAAAATTTTTGCTCTCCAAAAATACGAGTTTAAAAAAAAAATTGGGTGCTAGCCTGTC
* *
94882733 AATGACCGGCACCAAGTAC--AAAAAAA-TC-AA--TTT
66 AATGGCCGGCACCCAGTACAAAAAAAAATTCAAATTTTT
* *
94882766 TTTT-AAAAAAA--TTCGCTCTCCAAAAATACGAGTTTTAAAAAAAAAATTGGGTGCTAGCTTGT
1 TTTTAAAAAAAATTTTTGCTCTCCAAAAATACGAG-TTTAAAAAAAAAATTGGGTGCTAGCCTGT
*
94882828 CAATGGCCGACACCCAGTACCAAAAAAAAATTCAAATTTTT
65 CAATGGCCGGCACCCAGTA-CAAAAAAAAATTCAAATTTTT
94882869 TTTTAAAAAAAATTTTTGCTCTCCAAAAATACGAGTTTTAAAAAAAAAATTGGGTGCTAGCCTGT
1 TTTTAAAAAAAATTTTTGCTCTCCAAAAATACGAG-TTTAAAAAAAAAATTGGGTGCTAGCCTGT
*
94882934 CAATGGCCGGCA-CCAGGTACAAAAAAAAATTCAAGTTTTT
65 CAATGGCCGGCACCCA-GTACAAAAAAAAATTCAAATTTTT
* * * *
94882974 TTTTAAAAAAAGTTTTTTTTGCTGTTCGAAAATACGAGTTTAAAAAAAA
1 TTTTAAAAAAA---ATTTTTGCTCTCCAAAAATACGAGTTTAAAAAAAA
94883023 TTAAATTTTT
Statistics
Matches: 225, Mismatches: 17, Indels: 21
0.86 0.06 0.08
Matches are distributed among these distances:
95 19 0.08
96 41 0.18
97 8 0.04
98 4 0.02
99 7 0.03
100 2 0.01
101 2 0.01
103 7 0.03
104 7 0.03
105 34 0.15
106 63 0.28
107 11 0.05
108 20 0.09
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (104 bp):
TTTTAAAAAAAATTTTTGCTCTCCAAAAATACGAGTTTAAAAAAAAAATTGGGTGCTAGCCTGTC
AATGGCCGGCACCCAGTACAAAAAAAAATTCAAATTTTT
Found at i:94903491 original size:18 final size:18
Alignment explanation
Indices: 94903468--94903503 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
94903458 AACTTTCCTA
*
94903468 AATAAAGCAGTAGAATCC
1 AATAAAGCAGCAGAATCC
94903486 AATAAAGCAGCAGAATCC
1 AATAAAGCAGCAGAATCC
94903504 CATTATGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.19, G:0.17, T:0.14
Consensus pattern (18 bp):
AATAAAGCAGCAGAATCC
Found at i:94907847 original size:20 final size:20
Alignment explanation
Indices: 94907824--94907866 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
94907814 TAAAATATAT
*
94907824 TATAAATAATATAGT-ATAGA
1 TATAAAT-ATATAATGATAGA
*
94907844 TATAGATATATAATGATAGA
1 TATAAATATATAATGATAGA
94907864 TAT
1 TAT
94907867 TGATAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (20 bp):
TATAAATATATAATGATAGA
Found at i:94917006 original size:38 final size:37
Alignment explanation
Indices: 94916958--94917118 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 37
94916948 GACCAATCGA
* *
94916958 AACATGCCAGTTTGCTCATAAGAGCTATTACACCCAAT
1 AACACGCCAGTTTGCTCATAAGAGCTATT-CACCCGAT
* *
94916996 AACACACCAGTTTGCTCATAAGAGCTATCTCATCCGAT
1 AACACGCCAGTTTGCTCATAAGAGCTAT-TCACCCGAT
* * *
94917034 AACACGCCAATTTGCTTATAAGAGCTATTCCACCTGAT
1 AACACGCCAGTTTGCTCATAAGAGCTATT-CACCCGAT
* * *
94917072 AACACGCCAGTTTTCTCATAAGAGTTATTCTATCCGAT
1 AACACGCCAGTTTGCTCATAAGAGCTATTC-ACCCGAT
94917110 AACACGCCA
1 AACACGCCA
94917119 ATATATTTGT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
37 2 0.02
38 102 0.97
39 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (37 bp):
AACACGCCAGTTTGCTCATAAGAGCTATTCACCCGAT
Found at i:94917094 original size:76 final size:76
Alignment explanation
Indices: 94916958--94917120 Score: 229
Period size: 76 Copynumber: 2.1 Consensus size: 76
94916948 GACCAATCGA
* *
94916958 AACATGCCAGTTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
1 AACACGCCAATTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
94917023 -TCTCATCCGAT
66 TTCT-ATCCGAT
* * ** * * *
94917034 AACACGCCAATTTGCTTATAAGAGCTATTCCACCTGATAACACGCCAGTTTTCTCATAAGAGTTA
1 AACACGCCAATTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
94917099 TTCTATCCGAT
66 TTCTATCCGAT
94917110 AACACGCCAAT
1 AACACGCCAAT
94917121 ATATTTGTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
76 74 0.96
77 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (76 bp):
AACACGCCAATTTGCTCATAAGAGCTATTACACCCAATAACACACCAGTTTGCTCATAAGAGCTA
TTCTATCCGAT
Found at i:94918497 original size:23 final size:21
Alignment explanation
Indices: 94918474--94918518 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
94918464 GATTTACATG
94918474 ATGA-ATGTAGAATCATAGAT
1 ATGATATGTAGAATCATAGAT
* *
94918494 ATGATATGTAGAATTATATAT
1 ATGATATGTAGAATCATAGAT
94918515 ATGA
1 ATGA
94918519 CATAAATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (21 bp):
ATGATATGTAGAATCATAGAT
Found at i:94919890 original size:277 final size:277
Alignment explanation
Indices: 94919396--94919949 Score: 1099
Period size: 277 Copynumber: 2.0 Consensus size: 277
94919386 TAGAAGCTAA
94919396 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGAAAA
1 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGAAAA
94919461 GGATTGGAAATAAACCTAATTTGCATTGTATTTGGTTGGTTTTAATGGAAGATGAACAAGGTTTC
66 GGATTGGAAATAAACCTAATTTGCATTGTATTTGGTTGGTTTTAATGGAAGATGAACAAGGTTTC
94919526 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTTACGAAA
131 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTTACGAAA
94919591 ATTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAG
196 ATTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAG
94919656 GTTCAAGGTTGCACGAG
261 GTTCAAGGTTGCACGAG
94919673 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGAAAA
1 GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGAAAA
94919738 GGATTGGAAATAAACCTAATTTGCATTGTATTTGGTTGGTTTTAATGGAAGATGAACAAGGTTTC
66 GGATTGGAAATAAACCTAATTTGCATTGTATTTGGTTGGTTTTAATGGAAGATGAACAAGGTTTC
94919803 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTTACGAAA
131 TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTTACGAAA
*
94919868 ATTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTTTTTAG
196 ATTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAG
94919933 GTTCAAGGTTGCACGAG
261 GTTCAAGGTTGCACGAG
94919950 CCTATTTCCA
Statistics
Matches: 276, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
277 276 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (277 bp):
GGGCTATGTAAATAATAGTCGTAGTCATGCTTTCAGGTTTTGGGTGCTGGGTTTCAACATGAAAA
GGATTGGAAATAAACCTAATTTGCATTGTATTTGGTTGGTTTTAATGGAAGATGAACAAGGTTTC
TTTAATTTGTTGAGAAATTTTGATAGGAAGATGAGTAATCGTTCTTCATCTTTTTTTTTACGAAA
ATTTGAGTTATTTCTGTAAGTCACTCCTCAGACTAAAATTATAGGTCCCCAACAGAGCTCTTTAG
GTTCAAGGTTGCACGAG
Found at i:94921204 original size:6 final size:6
Alignment explanation
Indices: 94921149--94921242 Score: 50
Period size: 6 Copynumber: 15.7 Consensus size: 6
94921139 TTTCTCTTTC
* * * * * * *
94921149 TCTTCT TTTTCT CCTTCA CCTTCC TCTTCT TCCTCT AT-TTCT TCTGCT
1 TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT -TCTTCT TCTTCT
* * *
94921197 TCTTCT TCATCT GCTTCT TCTTCT GCTT-T GTC-TCT CTCTTCT TCTT
1 TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT -TCTTCT -TCTTCT TCTT
94921243 TCTCCATGCC
Statistics
Matches: 65, Mismatches: 18, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
5 3 0.05
6 58 0.89
7 4 0.06
ACGTcount: A:0.03, C:0.35, G:0.04, T:0.57
Consensus pattern (6 bp):
TCTTCT
Found at i:94921209 original size:15 final size:15
Alignment explanation
Indices: 94921191--94921219 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
94921181 CTCTATTTCT
94921191 TCTGCTTCTTCTTCA
1 TCTGCTTCTTCTTCA
94921206 TCTGCTTCTTCTTC
1 TCTGCTTCTTCTTC
94921220 TGCTTTGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.34, G:0.07, T:0.55
Consensus pattern (15 bp):
TCTGCTTCTTCTTCA
Found at i:94924243 original size:44 final size:44
Alignment explanation
Indices: 94924193--94924282 Score: 146
Period size: 44 Copynumber: 2.0 Consensus size: 44
94924183 ATTTACACAC
* *
94924193 TATTAAAGATATATATAAATTATACAACTTGTTCCTACTT-GTAT
1 TATTAAAGATATATATAAATTATACAACTCGATCCTA-TTGGTAT
94924237 TATTAAAGATATATATAAATTATACAACTCGATCCTATTGGTAT
1 TATTAAAGATATATATAAATTATACAACTCGATCCTATTGGTAT
94924281 TA
1 TA
94924283 GGATACTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 2 0.05
44 41 0.95
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (44 bp):
TATTAAAGATATATATAAATTATACAACTCGATCCTATTGGTAT
Found at i:94924868 original size:29 final size:29
Alignment explanation
Indices: 94924805--94924864 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
94924795 TAGAGATTGG
* * * *
94924805 ATCAATTTAATCTCTCTCCTATTAAATAG
1 ATCAATTTAATCTCTATACTATTAAAAAA
94924834 ATCAATTTAATCT-TATACTATTAAAAAA
1 ATCAATTTAATCTCTATACTATTAAAAAA
94924862 ATC
1 ATC
94924865 CAATGAAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.40
Consensus pattern (29 bp):
ATCAATTTAATCTCTATACTATTAAAAAA
Found at i:94927038 original size:2 final size:2
Alignment explanation
Indices: 94927031--94927063 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
94927021 ATCATGGGTA
94927031 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
94927064 TTCTTTACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:94929355 original size:12 final size:12
Alignment explanation
Indices: 94929338--94929364 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
94929328 ATCTCAATTT
94929338 AAAAAAAAAAGA
1 AAAAAAAAAAGA
94929350 AAAAAAAAAAGA
1 AAAAAAAAAAGA
94929362 AAA
1 AAA
94929365 CCCAGTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:94931122 original size:15 final size:16
Alignment explanation
Indices: 94931102--94931135 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
94931092 AAATTAAAAC
94931102 TTTATATAT-AATTAT
1 TTTATATATAAATTAT
*
94931117 TTTATATTTAAATTAT
1 TTTATATATAAATTAT
94931133 TTT
1 TTT
94931136 TTCCATTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATATATAAATTAT
Found at i:94932861 original size:5 final size:5
Alignment explanation
Indices: 94932851--94932914 Score: 128
Period size: 5 Copynumber: 12.8 Consensus size: 5
94932841 AGTATAAATA
94932851 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
94932901 TATAT TATAT TATA
1 TATAT TATAT TATA
94932915 ATAGTTTAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 59 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:94932988 original size:17 final size:16
Alignment explanation
Indices: 94932962--94932997 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
94932952 AGAAACAAAA
94932962 AGAATGAAAAAGAAAC
1 AGAATGAAAAAGAAAC
*
94932978 AGAATTGAAAACGAAAC
1 AGAA-TGAAAAAGAAAC
94932995 AGA
1 AGA
94932998 GAAGGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.64, C:0.08, G:0.19, T:0.08
Consensus pattern (16 bp):
AGAATGAAAAAGAAAC
Found at i:94937993 original size:32 final size:33
Alignment explanation
Indices: 94937957--94938037 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 33
94937947 TTTTTTTTGC
* *
94937957 TTTTTTTACTGTTTTGCTGCTATTTT-CTTATT-
1 TTTTTTTACTGTTTTGCTACCATTTTAC-TATTA
* *
94937989 TTTTTTCACTATTTTGCTACCATTTTACTATTA
1 TTTTTTTACTGTTTTGCTACCATTTTACTATTA
* *
94938022 TATTGTTACTGTTTTG
1 TTTTTTTACTGTTTTG
94938038 TTGTTATTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
32 26 0.67
33 13 0.33
ACGTcount: A:0.15, C:0.14, G:0.09, T:0.63
Consensus pattern (33 bp):
TTTTTTTACTGTTTTGCTACCATTTTACTATTA
Found at i:94938076 original size:17 final size:20
Alignment explanation
Indices: 94938033--94938073 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
94938023 ATTGTTACTG
94938033 TTTTGTTGTTATTATATAAC
1 TTTTGTTGTTATTATATAAC
*
94938053 TTTTGTT-TTATTGT-TAAC
1 TTTTGTTGTTATTATATAAC
94938071 TTT
1 TTT
94938074 GTTACTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.20, C:0.05, G:0.10, T:0.66
Consensus pattern (20 bp):
TTTTGTTGTTATTATATAAC
Found at i:94943075 original size:3 final size:3
Alignment explanation
Indices: 94943067--94943124 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
94943057 CTTTATTAAA
* * *
94943067 TAT TAT TAT TAT TAT T-T CTAA TAT TAT TAT CAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
94943112 T-T T-T TAT ATAT TA
1 TAT TAT TAT -TAT TA
94943125 GTGTATGTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 5 0.11
3 37 0.82
4 3 0.07
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:94943677 original size:18 final size:19
Alignment explanation
Indices: 94943656--94943695 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
94943646 ATATAGTATG
94943656 ATTTTTAAT-TACTTTATT
1 ATTTTTAATATACTTTATT
* *
94943674 ATTTTTATTATATTTTATT
1 ATTTTTAATATACTTTATT
94943693 ATT
1 ATT
94943696 CTTTTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTAATATACTTTATT
Found at i:94944072 original size:15 final size:15
Alignment explanation
Indices: 94944054--94944084 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
94944044 ATGTTCATTT
94944054 TATATATATTATGTA
1 TATATATATTATGTA
94944069 TATATATATTATGTA
1 TATATATATTATGTA
94944084 T
1 T
94944085 GTATTTAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
TATATATATTATGTA
Found at i:94947061 original size:26 final size:25
Alignment explanation
Indices: 94947040--94947111 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
94947030 TTTATTCTTC
*
94947040 TTATATTTATTACTAATATATTATTA
1 TTATAGTTATTA-TAATATATTATTA
*
94947066 TTATAGTTATTATCATATATGTATTA
1 TTATAGTTATTATAATATAT-TATTA
* *
94947092 TTA-AGTTTTTATAACATATT
1 TTATAGTTATTATAATATATT
94947112 TATGTAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 20 0.50
26 19 0.47
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATAGTTATTATAATATATTATTA
Found at i:94947458 original size:2 final size:2
Alignment explanation
Indices: 94947411--94947448 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
94947401 ATCATTTTCA
*
94947411 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
94947449 GGTTTATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:94947474 original size:21 final size:21
Alignment explanation
Indices: 94947432--94947474 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
94947422 TATATATATA
* *
94947432 TATATATATATCATATAGGTT
1 TATATACATATCATACAGGTT
* *
94947453 TATATACATGTCATACATGTT
1 TATATACATATCATACAGGTT
94947474 T
1 T
94947475 CATTACTCCT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (21 bp):
TATATACATATCATACAGGTT
Found at i:94947694 original size:13 final size:14
Alignment explanation
Indices: 94947670--94947700 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
94947660 AAATATTCGA
94947670 GTATTATTATATGT
1 GTATTATTATATGT
94947684 GTATT-TTATATGT
1 GTATTATTATATGT
94947697 GTAT
1 GTAT
94947701 ATGCTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (14 bp):
GTATTATTATATGT
Found at i:94950675 original size:13 final size:13
Alignment explanation
Indices: 94950657--94950709 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
94950647 TACATACATC
94950657 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
94950670 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
94950683 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
*
94950698 ATTA-AAAAAAAT
1 ATAATAAAAAAAT
94950710 TACCTTTTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
12 4 0.12
13 19 0.56
14 6 0.18
15 5 0.15
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:94953600 original size:21 final size:23
Alignment explanation
Indices: 94953570--94953622 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
94953560 GTTTTTAATT
*
94953570 AATTGTTTTAATTGATTC-AAC-A
1 AATT-TTTTAATTAATTCGAACGA
*
94953592 AATTTTTT-ATTAATTCGACCGA
1 AATTTTTTAATTAATTCGAACGA
94953614 AATTTTTTA
1 AATTTTTTA
94953623 CCAACTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 7 0.27
21 6 0.23
22 13 0.50
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (23 bp):
AATTTTTTAATTAATTCGAACGA
Found at i:94954043 original size:23 final size:23
Alignment explanation
Indices: 94954015--94954069 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
94954005 TGGGTAACTA
94954015 ATTTTTACAAGT-TTTTTTTAATG
1 ATTTTT-CAAGTGTTTTTTTAATG
*
94954038 ATTTTTCATGTGTTTTTTTAATG
1 ATTTTTCAAGTGTTTTTTTAATG
94954061 CAATTTTTC
1 --ATTTTTC
94954070 GAAAGAGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
25 7 0.25
ACGTcount: A:0.22, C:0.07, G:0.09, T:0.62
Consensus pattern (23 bp):
ATTTTTCAAGTGTTTTTTTAATG
Found at i:94956561 original size:46 final size:46
Alignment explanation
Indices: 94956366--94956697 Score: 175
Period size: 46 Copynumber: 7.4 Consensus size: 46
94956356 ATAATTCTAT
* *
94956366 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
94956412 CTTCATGTATTTGGCAG-CGAAGTAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTAC
*** * * * ** * * *
94956459 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
94956501 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
94956547 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
94956593 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
94956635 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
94956681 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
94956698 CAAAGCAGGT
Statistics
Matches: 195, Mismatches: 74, Indels: 34
0.64 0.24 0.11
Matches are distributed among these distances:
41 6 0.03
42 20 0.10
43 14 0.07
44 8 0.04
45 40 0.21
46 80 0.41
47 27 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:94956643 original size:134 final size:134
Alignment explanation
Indices: 94956299--94956773 Score: 761
Period size: 134 Copynumber: 3.5 Consensus size: 134
94956289 AATAGATTGA
* * * *
94956299 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCGATAACTCT
* *
94956364 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCATGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
*
94956429 CGAAGT
129 CGAAGC
*
94956435 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
94956500 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
94956565 GAAGC
130 GAAGC
94956570 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
94956635 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
94956700 AAGC
131 AAGC
* ** * ** * **
94956704 AGGTTGAAGACGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
94956769 CTCCC
66 CTCCC
94956774 GGGGCAAGAA
Statistics
Matches: 319, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
134 188 0.59
135 105 0.33
136 5 0.02
137 21 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:94956835 original size:44 final size:45
Alignment explanation
Indices: 94956781--94958124 Score: 1136
Period size: 44 Copynumber: 30.5 Consensus size: 45
94956771 CCCGGGGCAA
* * *
94956781 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * *
94956825 GAAGTGGATCGACGA-CGCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94956869 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94956913 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94956957 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94957001 GAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94957045 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94957089 GAAGTGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94957133 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * * * *
94957177 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
** * * * *
94957221 GAAGCGGATCGACGA-CGCAGATCTTGTCTTCCCATATTGGTGGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94957265 GAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGA-AGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * *
94957309 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94957353 GAAGTGGATCGACGAT-GCAGATCTTGTCTTCC-ATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94957396 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * *
94957440 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * ** *
94957484 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGCGGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * *
94957528 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCT-TATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94957571 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * *
94957615 GAAGTAGATTGCAGAAAGCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94957660 GAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* *
94957704 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT-G-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * *
94957746 GCAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 G-AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * *
94957791 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATA-TGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94957834 GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94957878 GAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGT-GT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * **
94957922 GAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * *
94957966 GAAGTGGATTGACGAT-GCAGATCTTGTCTTCCCATACTGGTGGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * * * *
94958010 GAAGTAGATCGAAAAAAAAACAGATCTTATCTTCGTGTATTGG-CGT
1 GAAGTAGATCG--AAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
* * * * *
94958056 GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATA-TTGGTAGT
* * *
94958102 GAAGCAGATCAAAGATGGCAGAT
1 GAAGTAGATCGAAGATAGCAGAT
94958125 TTTACCTCCC
Statistics
Matches: 1022, Mismatches: 240, Indels: 74
0.76 0.18 0.06
Matches are distributed among these distances:
42 42 0.04
43 230 0.23
44 497 0.49
45 199 0.19
46 36 0.04
47 18 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGT
Found at i:94957018 original size:132 final size:132
Alignment explanation
Indices: 94956781--94957945 Score: 1330
Period size: 132 Copynumber: 8.8 Consensus size: 132
94956771 CCCGGGGCAA
* * *
94956781 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94956846 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94956911 GT
131 GT
* * * *
94956913 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94956978 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94957043 GT
131 GT
* * *
94957045 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94957110 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94957175 GT
131 GT
* * * * * * * * *
94957177 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGCGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94957242 TCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGG
94957306 CGT
130 CGT
* * * * * *
94957309 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94957374 TCTTGTCTT-CCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94957438 GT
131 GT
*
94957440 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * ** * * *
94957505 TCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCT-TATTGGT
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-
*
94957569 AG-
130 CGT
* * * * * * * * *
94957571 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
** * * * * *
94957635 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTG
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
*
94957700 GTAG-
129 G-CGT
* * * * * *
94957704 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT-GGCAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGG-AAGTGGATCGAAG-ATGCA
*** * * ** * * * *
94957767 GATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATA-TG
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
*
94957830 GTAG-
129 G-CGT
* * * * * * * * * *
94957834 GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
*** * * **
94957898 GATCTTGTCTTCATGTATTGGT-GTGAAGTAGATCAAAGGTAGCAGATC
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATC
94957946 CGGTCTTCCT
Statistics
Matches: 948, Mismatches: 74, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
130 69 0.07
131 254 0.27
132 575 0.61
133 50 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:94958111 original size:46 final size:44
Alignment explanation
Indices: 94958030--94958137 Score: 117
Period size: 46 Copynumber: 2.4 Consensus size: 44
94958020 GAAAAAAAAA
* * * * * *
94958030 CAGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTG
1 CAGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGG
*
94958074 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGG
1 CAGATCTTACCTTCCTGTA-TTGGC-GCGAAGCAGATCAAAGATGG
* *
94958120 CAGATTTTACCTCCCTGT
1 CAGATCTTACCTTCCTGT
94958138 GACTACAGTG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 16 0.31
45 5 0.10
46 31 0.60
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (44 bp):
CAGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGG
Found at i:94959755 original size:23 final size:23
Alignment explanation
Indices: 94959711--94959756 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
94959701 ATATTACCAT
**
94959711 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
94959734 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
94959757 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:94960023 original size:19 final size:19
Alignment explanation
Indices: 94959988--94960024 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94959978 ATATATTACC
**
94959988 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
94960007 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
94960025 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:94962193 original size:19 final size:20
Alignment explanation
Indices: 94962153--94962196 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
94962143 GTCTCTTTAG
* *
94962153 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
94962172 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
94962191 GCATTA
1 GCATTA
94962197 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:94978480 original size:13 final size:13
Alignment explanation
Indices: 94978462--94978515 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
94978452 TACATACATC
94978462 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
94978475 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
94978488 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
94978503 ATTAA-AAAAAAAT
1 A-TAATAAAAAAAT
94978516 TACCTTTTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 19 0.54
14 9 0.26
15 5 0.14
16 2 0.06
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:94981400 original size:21 final size:23
Alignment explanation
Indices: 94981370--94981422 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
94981360 GTTTTTAATT
*
94981370 AATTGTTTTAATTGATTC-AAC-A
1 AATT-TTTTAATTAATTCGAACGA
*
94981392 AATTTTTT-ATTAATTCGACCGA
1 AATTTTTTAATTAATTCGAACGA
94981414 AATTTTTTA
1 AATTTTTTA
94981423 CCAACTGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 7 0.27
21 6 0.23
22 13 0.50
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (23 bp):
AATTTTTTAATTAATTCGAACGA
Found at i:94981843 original size:23 final size:23
Alignment explanation
Indices: 94981815--94981869 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
94981805 TGGGTAACTA
94981815 ATTTTTACAAGT-TTTTTTTAATG
1 ATTTTT-CAAGTGTTTTTTTAATG
*
94981838 ATTTTTCATGTGTTTTTTTAATG
1 ATTTTTCAAGTGTTTTTTTAATG
94981861 CAATTTTTC
1 --ATTTTTC
94981870 GAAAGAGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 4 0.14
23 17 0.61
25 7 0.25
ACGTcount: A:0.22, C:0.07, G:0.09, T:0.62
Consensus pattern (23 bp):
ATTTTTCAAGTGTTTTTTTAATG
Found at i:94982068 original size:17 final size:17
Alignment explanation
Indices: 94982048--94982102 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
94982038 GTCGTTACCT
94982048 AATATAAAATTAAAATA
1 AATATAAAATTAAAATA
*
94982065 AATATAATATTAATAA-A
1 AATATAAAATTAA-AATA
*
94982082 AATTTAAATACTTAAAATA
1 AATATAAA-A-TTAAAATA
94982101 AA
1 AA
94982103 ATGTTCACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 19 0.61
18 5 0.16
19 7 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
AATATAAAATTAAAATA
Found at i:94982100 original size:27 final size:28
Alignment explanation
Indices: 94982047--94982100 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
94982037 AGTCGTTACC
*
94982047 TAATATAAAATTAAAATAAATATAATAT
1 TAATATAAAATTAAAATAAATAAAATAT
* **
94982075 TAATA-AAAATTTAAATACTTAAAATA
1 TAATATAAAATTAAAATAAATAAAATA
94982101 AAATGTTCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (28 bp):
TAATATAAAATTAAAATAAATAAAATAT
Found at i:94984364 original size:46 final size:46
Alignment explanation
Indices: 94984169--94984500 Score: 175
Period size: 46 Copynumber: 7.4 Consensus size: 46
94984159 ATAATTCTAT
* *
94984169 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
94984215 CTTCATGTATTTGGCAG-CGAAGTAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTAC
*** * * * ** * * *
94984262 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
94984304 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
94984350 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
94984396 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
94984438 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
94984484 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
94984501 CAAAGCAGGT
Statistics
Matches: 195, Mismatches: 74, Indels: 34
0.64 0.24 0.11
Matches are distributed among these distances:
41 6 0.03
42 20 0.10
43 14 0.07
44 8 0.04
45 40 0.21
46 80 0.41
47 27 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:94984446 original size:134 final size:134
Alignment explanation
Indices: 94984102--94984576 Score: 761
Period size: 134 Copynumber: 3.5 Consensus size: 134
94984092 AATAGATTGA
* * * *
94984102 AGATCAAGGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCGATAACTCT
* *
94984167 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCATGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
*
94984232 CGAAGT
129 CGAAGC
*
94984238 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
94984303 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
94984368 GAAGC
130 GAAGC
94984373 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
94984438 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
94984503 AAGC
131 AAGC
* ** * ** * **
94984507 AGGTTGAAGACGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
94984572 CTCCC
66 CTCCC
94984577 GGGGCAAGAA
Statistics
Matches: 319, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
134 188 0.59
135 105 0.33
136 5 0.02
137 21 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:94984712 original size:88 final size:89
Alignment explanation
Indices: 94984584--94985902 Score: 1021
Period size: 88 Copynumber: 14.9 Consensus size: 89
94984574 CCCGGGGCAA
* * * * * *
94984584 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
94984647 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
94984671 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * * * *
94984735 AGGTCCTATCTTCCTATATTGATAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
94984760 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * * *
94984824 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * * * *
94984848 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
94984911 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
94984935 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA-
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGA-AAG
* * * * * *
94984998 CAGGTCCTATCTTCCTATAATGATTG
64 CAGATCTTGTCTTCCTATATTGGTGG
** * * * *
94985024 GAAGCGGATCGACG-ACGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
* * * *
94985087 AGATCTTGTCTTCATGTATTGGCGT
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * *
94985112 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
94985175 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * **
94985199 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
94985263 AGATCCTATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * ** * * **
94985288 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * *
94985352 GATCCTATCTTCCTATATTGGTAG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
94985376 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
*
94985439 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
** * * * * * *
94985464 CGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
*
94985527 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * **
94985552 CAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
94985616 AGATCCTATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * *
94985641 GAAGTGGATCAAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
* * *
94985704 AGATCTTGTCTTCATGTATTGGTGT
65 AGATCTTGTCTTCCTATATTGGTGG
* ** ** * * *
94985729 GAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGATTGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* *
94985792 GATCTTGTCTTCCCATACTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
94985816 TGAAGTAGATCGAAAAAAAAAACAGATCTTATCTTCGTGTATTGG-CGTGAAGTAGATCGAAGAT
1 -GAAGTAGATCG---AAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAA
* * *
94985880 TGCAGATCTTGCCTTCCTGTATT
62 AGCAGATCTTGTCTTCCTATATT
94985903 TGGCAGCGAA
Statistics
Matches: 973, Mismatches: 225, Indels: 62
0.77 0.18 0.05
Matches are distributed among these distances:
87 161 0.17
88 559 0.57
89 178 0.18
90 24 0.02
91 32 0.03
92 19 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (89 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
GATCTTGTCTTCCTATATTGGTGG
Found at i:94984821 original size:132 final size:132
Alignment explanation
Indices: 94984584--94985752 Score: 1341
Period size: 132 Copynumber: 8.8 Consensus size: 132
94984574 CCCGGGGCAA
* * *
94984584 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94984649 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94984714 GT
131 GT
* * * *
94984716 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94984781 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94984846 GT
131 GT
* * *
94984848 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94984913 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94984978 GT
131 GT
* * * * * * * * *
94984980 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGCGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94985045 TCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGG
94985109 CGT
130 CGT
* * * * * *
94985112 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94985177 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94985242 GT
131 GT
*
94985244 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * ** * * * *
94985309 TCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-
*
94985374 AG-
130 CGT
* * * * * * * * *
94985376 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
** * * * * *
94985440 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTG
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
*
94985505 GTAG-
129 G-CGT
* * * * * *
94985509 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT-GGCAAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGG--AAGTGGATCGAAG-ATGC
*** * * ** * * * *
94985572 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
63 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
94985636 GGTAG-
128 GG-CGT
* * * * * * * * * *
94985641 GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
*** * * **
94985705 GATCTTGTCTTCATGTATTGGT-GTGAAGTAGATCAAAGGTAGCAGATC
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATC
94985753 CGGTCTTCCT
Statistics
Matches: 952, Mismatches: 75, Indels: 20
0.91 0.07 0.02
Matches are distributed among these distances:
131 24 0.03
132 779 0.82
133 148 0.16
134 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:94985753 original size:132 final size:132
Alignment explanation
Indices: 94984584--94985902 Score: 1090
Period size: 132 Copynumber: 10.0 Consensus size: 132
94984574 CCCGGGGCAA
* * * * * * * * *
94984584 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
* * ** * * *
94984647 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
65 GATCTTGTCTTCCCATATTGGT-GTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTG
*
94984712 G-CG
129 GTAG
* * * * * * * * * *
94984715 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATA-C
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* ** * * * *
94984778 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCCCATATTGGT-GTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
*
94984843 GG-CG
128 GGTAG
* * * * * * * * * *
94984847 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * ** * * *
94984910 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCCCATATTGGT-GTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
*
94984975 GG-CG
128 GGTAG
* * * * * * * * * * ** * *
94984979 TGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-GAAGCGGATCGACG-ACGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
** * * *
94985042 AGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTAT
64 AGATCTTGTCTTCCCATATTGGT-GTGAAGTAGATCGA-AGGTAGCAGATCCTGTCTTCCTATAT
*
94985106 TGG-CG
127 TGGTAG
* * * * * * * * *
94985111 TGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * ** * * *
94985174 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCCCATATTGGT-GTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
*
94985239 GG-CG
128 GGTAG
* * * * * * * *
94985243 TGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
* * *
94985306 AGATCTTGTCTTCCCATATTGGCGGGGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
64 AGATCTTGTCTTCCCATATTGG-TGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
94985371 GGTAG
128 GGTAG
* *
94985376 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* * *
94985441 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGG
66 ATCTTGTCTTCCCATATTGGT-GTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGG
94985506 TAG
130 TAG
*
94985509 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCAAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
*** * *
94985574 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
66 ATCTTGTCTTCCCATATTGGTGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
94985639 AG
131 AG
* * *
94985641 GAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
*** * *
94985706 ATCTTGTCTTCATGTATTGGTGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGT
66 ATCTTGTCTTCCCATATTGGTGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
94985771 AG
131 AG
* * * * * *
94985773 GAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAAAAAAAAA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG---AAGAAAG
* *** * * * * * *
94985838 CAGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATT
63 CAGATCTTGTCTTCCCATATTGGTGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATT
94985903 TGGCAGCGAA
Statistics
Matches: 1075, Mismatches: 100, Indels: 21
0.90 0.08 0.02
Matches are distributed among these distances:
131 23 0.02
132 844 0.79
133 149 0.14
135 59 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
ATCTTGTCTTCCCATATTGGTGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
AG
Found at i:94985931 original size:46 final size:44
Alignment explanation
Indices: 94985838--94985945 Score: 117
Period size: 46 Copynumber: 2.4 Consensus size: 44
94985828 AAAAAAAAAA
* * * * * *
94985838 CAGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTG
1 CAGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGG
*
94985882 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGG
1 CAGATCTTACCTTCCTGTA-TTGGC-GCGAAGCAGATCAAAGATGG
* *
94985928 CAGATTTTACCTCCCTGT
1 CAGATCTTACCTTCCTGT
94985946 GACTACAGTG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 16 0.31
45 5 0.10
46 31 0.60
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (44 bp):
CAGATCTTACCTTCCTGTATTGGCGCGAAGCAGATCAAAGATGG
Found at i:94987571 original size:23 final size:23
Alignment explanation
Indices: 94987527--94987572 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
94987517 ATATTACCAT
**
94987527 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
94987550 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
94987573 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:94987839 original size:19 final size:19
Alignment explanation
Indices: 94987804--94987840 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94987794 ATATATTACC
**
94987804 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
94987823 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
94987841 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:94990013 original size:19 final size:20
Alignment explanation
Indices: 94989973--94990016 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
94989963 GTCTCTTTAG
* *
94989973 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
94989992 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
94990011 GCATTA
1 GCATTA
94990017 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:94994271 original size:86 final size:86
Alignment explanation
Indices: 94994116--94994551 Score: 656
Period size: 86 Copynumber: 5.1 Consensus size: 86
94994106 AGTAAAAATT
* * * * * * * * *
94994116 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGGTGGTTGAAGTTATCAGATCTTGCCTTCCA
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
94994181 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
94994202 GAAAACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
94994267 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
94994288 GAACACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCAT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
94994353 TCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
94994374 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
94994439 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * * * * *
94994460 GAAGATAAACCTTGCCTCTGTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
94994525 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
94994547 GAAGA
1 GAAGA
94994552 TGGCAGATTT
Statistics
Matches: 322, Mismatches: 27, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
86 301 0.93
87 21 0.07
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:94994669 original size:46 final size:46
Alignment explanation
Indices: 94994607--94995572 Score: 256
Period size: 46 Copynumber: 21.4 Consensus size: 46
94994597 ATAATTCTAT
*
94994607 CTCCCTGTATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
94994653 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * *
94994699 CTCCCTG-A--CCACAGTGGAGTACATTGAAGCCAAT--A-ATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAG--ATTGCAGA-TCT-TGC
94994741 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
94994787 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
* * * * ** * * **
94994833 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
* *
94994875 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTGC
* ** * * * ** *
94994928 CTCCATGTAACT-ACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
*
94994972 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
94995018 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTGC
*** * * * ** * * **
94995065 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
94995107 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
94995153 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** * * **
94995199 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
94995241 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
94995287 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGAT-TGAAGATTGCAGATCTTGC
*** * * * ** * * **
94995334 CTCCCTG-A--CCACAGTGGAGTACACTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
94995376 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * * *
94995422 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGTAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** * * **
94995468 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGC
94995510 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
*
94995556 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
94995573 CAAAGCAGGT
Statistics
Matches: 621, Mismatches: 228, Indels: 142
0.63 0.23 0.14
Matches are distributed among these distances:
41 15 0.02
42 58 0.09
43 54 0.09
44 33 0.05
45 146 0.24
46 227 0.37
47 57 0.09
52 16 0.03
53 12 0.02
54 3 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:94994671 original size:134 final size:134
Alignment explanation
Indices: 94994499--94994908 Score: 732
Period size: 134 Copynumber: 3.1 Consensus size: 134
94994489 GCAGAGCTGG
* * *
94994499 TTGAAGATAT-CAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
94994563 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
*
94994628 ATAAA
130 ATAGA
94994633 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
94994698 CCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
94994763 TAGA
131 TAGA
94994767 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* *
94994832 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
94994897 TAGA
131 TAGA
94994901 TTGAAGAT
1 TTGAAGAT
94994909 CAAGGATGGC
Statistics
Matches: 266, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
133 1 0.00
134 265 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:94994895 original size:45 final size:45
Alignment explanation
Indices: 94994844--94995003 Score: 124
Period size: 45 Copynumber: 3.4 Consensus size: 45
94994834 TCCCTGACTA
* *
94994844 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
* * * * * ** *
94994889 CAGTGGAATAGATTGAAGATCAAGGATGGCAGATTTTACCTCCATGTAACT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ATTCTATCTCCCTGTATTTGG
* *
94994941 CAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTATATTTGG
1 CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
*
94994986 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
94995004 ATTGCAGATC
Statistics
Matches: 84, Mismatches: 22, Indels: 18
0.68 0.18 0.15
Matches are distributed among these distances:
44 13 0.15
45 33 0.39
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 13 0.15
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGG
Found at i:94994924 original size:95 final size:96
Alignment explanation
Indices: 94994810--94995005 Score: 340
Period size: 97 Copynumber: 2.0 Consensus size: 96
94994800 GCAGCGAAGC
*
94994810 AGATCAAAGATGGCAGATTTTACCTCCCTG-ACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCATGAACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
94994874 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCTCCCTATATTTGGCAGTGGAATAGATTGA
* *
94994905 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCATG-AACTACAGTGGAGTACATTGAAGCCGATAACTCT
94994970 ATCTCCCTATATTTGGCAGTGGAATAGATTGA
65 ATCTCCCTATATTTGGCAGTGGAATAGATTGA
94995002 AGAT
1 AGAT
94995006 TGCAGATCTT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 28 0.29
97 67 0.71
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCATGAACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTATATTTGGCAGTGGAATAGATTGA
Found at i:94994968 original size:231 final size:230
Alignment explanation
Indices: 94994676--94995140 Score: 842
Period size: 231 Copynumber: 2.0 Consensus size: 230
94994666 GCAGCGAAGC
*
94994676 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCATGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
*
94994741 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
94994806 AAGCAGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAAC
131 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
94994870 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
94994905 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCATG--ACCACAGTGGAGTACATTGAAGCCAATAATTCT
94994970 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
94995035 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
129 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
94995100 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
194 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
94995137 AGAT
1 AGAT
94995141 TGCAGATCTT
Statistics
Matches: 226, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
229 28 0.12
231 106 0.47
232 92 0.41
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (230 bp):
AGATCAAAGATGGCAGATTTTACCTCCATGACCACAGTGGAGTACATTGAAGCCAATAATTCTAT
CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:94995246 original size:366 final size:363
Alignment explanation
Indices: 94994542--94995274 Score: 1351
Period size: 366 Copynumber: 2.0 Consensus size: 363
94994532 GCAGCGAAGC
*
94994542 AGATCGAAGATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCATGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
*
94994607 CTCCCTGTATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
94994672 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCAATAATT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCAATAACT
94994737 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
*
94994802 AGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGAT
261 AGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGAT
94994867 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
326 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
94994905 AGATC-AAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTC
1 AGATCGAA-GATGGCAGATTTTACCTCCATG--ACAACAGTGGAGTACATTGAAGCCGATAATTC
*
94994969 TATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
63 TATCTCCCTATATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
*
94995034 GCGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGAT
128 GCGAAGCAGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCAAT
94995099 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
192 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
94995164 TGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGC
257 TGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGC
94995229 CGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
322 CGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
94995271 AGAT
1 AGAT
94995275 TGCAGATCTT
Statistics
Matches: 358, Mismatches: 8, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
362 2 0.01
363 26 0.07
365 106 0.30
366 224 0.63
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (363 bp):
AGATCGAAGATGGCAGATTTTACCTCCATGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTATATTTGGCAGTGGAATAAATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCAATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
AGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGAT
AACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:94995251 original size:134 final size:134
Alignment explanation
Indices: 94994905--94995648 Score: 1281
Period size: 134 Copynumber: 5.5 Consensus size: 134
94994895 AATAGATTGA
* * * *
94994905 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG--ACCACAGTGGAGTACATTGAAGCCGATAACTCT
*
94994970 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
94995035 CGAAGC
129 CGAAGC
*
94995041 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
94995106 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
94995171 GAAGC
130 GAAGC
94995176 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
94995241 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
94995306 AAGC
131 AAGC
*
94995310 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
94995375 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
94995440 GAAGC
130 GAAGC
*
94995445 AGATCAAAGATGGTAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
94995510 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
94995575 AAGC
131 AAGC
* ** * * ** * **
94995579 AGGTTGAAGACGGTAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
94995644 CTCCC
66 CTCCC
94995649 GGGGCAAGAA
Statistics
Matches: 586, Mismatches: 20, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
134 320 0.55
135 238 0.41
136 5 0.01
137 23 0.04
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:94995275 original size:269 final size:269
Alignment explanation
Indices: 94994905--94995648 Score: 1301
Period size: 269 Copynumber: 2.8 Consensus size: 269
94994895 AATAGATTGA
* * * *
94994905 AGATCAAGGATGGCAGATTTTACCTCCATGTAACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG--ACCACAGTGGAGTACATTGAAGCCGATAACTCT
*
94994970 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
94995035 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
129 CGAAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATA
94995100 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTT
194 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTT
94995165 GGCAGCGAAGC
259 GGCAGCGAAGC
94995176 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
94995241 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
94995306 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
131 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
94995371 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGG
196 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGG
94995436 CAGCGAAGC
261 CAGCGAAGC
*
94995445 AGATCAAAGATGGTAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
94995510 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* ** * * ** * * **
94995575 AAGCAGGT-TGAAGACGGTAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGT
131 AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
94995639 TCTATCTCCC
196 TCTATCTCCC
94995649 GGGGCAAGAA
Statistics
Matches: 455, Mismatches: 18, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
268 56 0.12
269 371 0.82
271 28 0.06
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (269 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAAC
TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGG
CAGCGAAGC
Found at i:94995784 original size:88 final size:89
Alignment explanation
Indices: 94995656--94996973 Score: 976
Period size: 88 Copynumber: 14.9 Consensus size: 89
94995646 CCCGGGGCAA
* * * * * *
94995656 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
94995719 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
94995743 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * * * *
94995807 AGGTCCTATCTTCCTATATTGATAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
94995832 GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * * *
94995896 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * * * *
94995920 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
94995983 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * *
94996007 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAA-
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGA-AAG
* * * * * *
94996070 CAGGTCCTATCTTCCTATAATGATTG
64 CAGATCTTGTCTTCCTATATTGGTGG
* * * * *
94996096 GAAG-CGAATCGACG-ACGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAG
1 GAAGTAG-ATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAG
* * * *
94996158 CAGATCTTGTCTTCATGTATTGGCGT
64 CAGATCTTGTCTTCCTATATTGGTGG
* * * * * *
94996184 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
*
94996247 GATCTTGTCTTCCCATATTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * **
94996271 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
94996335 AGATCCTATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * ** * * **
94996360 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* * *
94996424 GATCCTATCTTCCTATATTGGTAG
66 GATCTTGTCTTCCTATATTGGTGG
* * * * * * *
94996448 GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
*
94996511 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
** * * * * * *
94996536 CGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
*
94996599 AGATCTTGTCTTCCCATATTGGTGG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * **
94996624 CAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGC
* * *
94996688 AGATCATATCTTCCTATATTGGTAG
65 AGATCTTGTCTTCCTATATTGGTGG
* * * * * * * *
94996713 GAAGTGGATCAAAG-ATGCAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATTG-CAGAAAGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAC-GAAAGC
* * * *
94996776 AGATCTTGTCTTCATGTATTGGCGT
65 AGATCTTGTCTTCCTATATTGGTGG
* ** ** * * *
94996801 GAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGTAG-GAAGTGGATTGACG-ATGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
* *
94996864 GATCTTGTCTTCCCATACTGGTGG
66 GATCTTGTCTTCCTATATTGGTGG
* ** * * * * * **
94996888 TGAAGTAGATCGAAAAAAAAATAGATCTTATCTTCGTGTATTGG-CGTGAAGTAGATCGAAGATT
1 -GAAGTAGATCG--AAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAA
* *
94996952 GCAGATCTTGCCTTCCTGTATT
63 GCAGATCTTGTCTTCCTATATT
94996974 TGGCAGCGAA
Statistics
Matches: 965, Mismatches: 231, Indels: 65
0.77 0.18 0.05
Matches are distributed among these distances:
87 160 0.17
88 553 0.57
89 179 0.19
90 54 0.06
91 19 0.02
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (89 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGACGAAAGCA
GATCTTGTCTTCCTATATTGGTGG
Found at i:94995893 original size:132 final size:132
Alignment explanation
Indices: 94995656--94996788 Score: 1312
Period size: 132 Copynumber: 8.6 Consensus size: 132
94995646 CCCGGGGCAA
* * *
94995656 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94995721 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94995786 GT
131 GT
* * * *
94995788 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94995853 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94995918 GT
131 GT
* * *
94995920 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94995985 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94996050 GT
131 GT
* * * * * * * * * *
94996052 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGCGAATCGACGACGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94996117 TCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGG
94996181 CGT
130 CGT
* * * * * *
94996184 GAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
94996249 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
94996314 GT
131 GT
*
94996316 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* ** * * * *
94996381 TCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-
*
94996446 AG-
130 CGT
* * * * * * * * * *
94996448 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGTA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
** * * * * *
94996512 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTG
64 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
*
94996577 GTAG-
129 G-CGT
* * * * * *
94996581 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT-GGCAAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGG--AAGTGGATCGAAG-ATGC
*** * * * ** * * * *
94996644 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGGTAGCAGATCATATCTTCCTATATT
63 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
94996708 GGTAG-
128 GG-CGT
* * * * * * * * * * *
94996713 GAAGTGGATCAAAGAT-GCAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
94996777 GATCTTGTCTTC
64 GATCTTGTCTTC
94996789 ATGTATTGGC
Statistics
Matches: 913, Mismatches: 79, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
131 24 0.03
132 741 0.81
133 147 0.16
134 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:94996789 original size:132 final size:132
Alignment explanation
Indices: 94995656--94996958 Score: 871
Period size: 132 Copynumber: 9.8 Consensus size: 132
94995646 CCCGGGGCAA
* * * * * * * * *
94995656 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGACG-ACGCA
1 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
*** * * * ** * * * *
94995719 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
65 GATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTG
*
94995784 G-CG
129 GTAG
* * * * * * * * * *
94995787 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATA-C
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** * * ** * * * * *
94995850 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
*
94995915 GG-CG
128 GGTAG
* * * * * * * * * *
94995919 TGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** * * * ** * * * *
94995982 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
*
94996047 GG-CG
128 GGTAG
* * * * * * * * * * * * *
94996051 TGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTG-GAAG-CGAATCGACG-ACG
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAG-ATCGAAGAAAG
*** * ** * * * *
94996113 CAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTA
63 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGA-AGGTAGCAGATCCTATCTTCCTATA
*
94996177 TTGG-CG
126 TTGGTAG
* * * * * * * * *
94996183 TGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGACG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** * * * ** * * * *
94996246 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATT
64 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
*
94996311 GG-CG
128 GGTAG
* * * * * * * *
94996315 TGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGC
*** *
94996378 AGATCTTGTCTTCCCATATTGGCGGCGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
64 AGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATT
94996443 GGTAG
128 GGTAG
* * *
94996448 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGTAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
*** * * *
94996513 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGGTATCAGATCCTATCTTCCTATATTGG
66 ATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGG
94996578 TAG
130 TAG
*
94996581 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCAAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* *
94996646 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCATATCTTCCTATATTGGT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
94996711 AG
131 AG
* * * *
94996713 GAAGTGGATCAAAGATGCAGATCTTGTATTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* **
94996778 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGGTAGCAGATCCGGTCTTCCTATATTGGT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
94996843 AG
131 AG
* * * * * **
94996845 GAAGTGGATTGACGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAAAAAAAAT
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG--AAGAAAGC
* * * *
94996910 AGATCTTATCTTCGTGTATTGGCGTGAAGTAGATCGAAGATTGCAGATC
64 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATC
94996959 TTGCCTTCCT
Statistics
Matches: 1059, Mismatches: 99, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
131 24 0.02
132 838 0.79
133 149 0.14
134 48 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT
AG
Found at i:94998641 original size:23 final size:23
Alignment explanation
Indices: 94998597--94998642 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
94998587 ATATTACCAT
**
94998597 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
94998620 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
94998643 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:94998909 original size:19 final size:19
Alignment explanation
Indices: 94998874--94998910 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94998864 ATATATTACC
**
94998874 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
94998893 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
94998911 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:95007854 original size:18 final size:19
Alignment explanation
Indices: 95007827--95007868 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
95007817 GTAATAAATT
*
95007827 TATATTTATATTA-ATATC
1 TATATCTATATTATATATC
*
95007845 TATATCTATATTATCTATC
1 TATATCTATATTATATATC
95007864 TATAT
1 TATAT
95007869 ACTTAGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATCTATATTATATATC
Found at i:95010070 original size:3 final size:3
Alignment explanation
Indices: 95010062--95010144 Score: 166
Period size: 3 Copynumber: 27.7 Consensus size: 3
95010052 AGATTTAAAA
95010062 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
95010110 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
95010145 AGGTTTACTG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:95013461 original size:25 final size:27
Alignment explanation
Indices: 95013423--95013477 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
95013413 TTGCTGCAAA
**
95013423 TTTTTTTTTGACAAGTGCAAC-ATCAC
1 TTTTTTTTTGACAACAGCAACAATCAC
95013449 TTTTTTTTT-ACAACAGCAACAATCAC
1 TTTTTTTTTGACAACAGCAACAATCAC
95013475 TTT
1 TTT
95013478 CCATTTGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (27 bp):
TTTTTTTTTGACAACAGCAACAATCAC
Found at i:95015663 original size:14 final size:14
Alignment explanation
Indices: 95015646--95015672 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95015636 TATATTTGCT
95015646 TATATATGTATATA
1 TATATATGTATATA
95015660 TATATATGTATAT
1 TATATATGTATAT
95015673 GTATTTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TATATATGTATATA
Found at i:95015896 original size:15 final size:17
Alignment explanation
Indices: 95015864--95015904 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
95015854 TCTCACATGC
*
95015864 ATATTTTTTATATGTAT
1 ATATTATTTATATGTAT
95015881 ATATTATTTAT-T-TAT
1 ATATTATTTATATGTAT
*
95015896 ATAATATTT
1 ATATTATTT
95015905 GTACGCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 11 0.50
16 1 0.05
17 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATATTATTTATATGTAT
Found at i:95017835 original size:19 final size:20
Alignment explanation
Indices: 95017795--95017838 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
95017785 GTCTCTTTAG
* *
95017795 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
95017814 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
95017833 GCATTA
1 GCATTA
95017839 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:95022309 original size:42 final size:42
Alignment explanation
Indices: 95022261--95022395 Score: 116
Period size: 43 Copynumber: 3.2 Consensus size: 42
95022251 AGACACAAAC
95022261 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAAAGAT
** * * * ** *
95022303 CTTG-C-CTTTCTGCAT-TGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTTTC-GGTTGTGATA--G-AGCTGGTTAAAGA-A-AAGAT
95022347 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAAAGAT
95022389 CTTGCCT
1 CTTGCCT
95022396 TCCTACATTG
Statistics
Matches: 67, Mismatches: 16, Indels: 20
0.65 0.16 0.19
Matches are distributed among these distances:
40 9 0.13
41 5 0.07
42 14 0.21
43 18 0.27
44 7 0.10
45 5 0.07
46 9 0.13
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (42 bp):
CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAAAGAT
Found at i:95022786 original size:348 final size:348
Alignment explanation
Indices: 95022125--95022797 Score: 989
Period size: 348 Copynumber: 1.9 Consensus size: 348
95022115 ATGAAGTTAC
* * *
95022125 AGATCTTGCCTTCCTGCATTGATAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
* *
95022190 TGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGAC
66 TGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGAC
* * * *
95022255 ACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAAAGATCTTGCCTTTCTGCATTG
131 ACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGTTAAAGAAAAGATCTTGCCTTCCTACATTA
* ** * * *
95022320 ACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTAAAGAAA
196 ACAGCGAAGCAGATCGAAGACACAAACCTTGCATCCATCGATTGAGATAGAGCTAGTTAAAGAAA
* * * **
95022385 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
261 AGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCGAAGAAACAAACCTTGCCTCCATCGGTTG
95022450 TGATAGAGCTGGTTGAAGACAAA
326 TGATAGAGCTGGTTGAAGACAAA
*
95022473 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
* *
95022538 TGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGAC
66 TGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGAC
* *
95022603 ACAAACCTTGCCTCTCTCGGTTGT-AGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTACAT
131 ACAAACCTTGCCTCTCTCGGTTGTGA-TAGAGCTGGTTAAAGAA-AAGATCTTGCCTTCCTACAT
*
95022667 TAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCATCCATCGATTGCAG-TGGAGCTAGTTAAA
194 TAACAGCGAAGCAGATCGAAGACACAAA-CCTTGCATCCATCGATTG-AGATAGAGCTAGTTAAA
* **
95022729 GAAGCAGATCTTGCCTTCCTGTATTAACAGCAAAGCAGATC-AA-AAACAAAGCCTTGCCTCCAT
257 GAA-AAGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCGAAGAAACAAA-CCTTGCCTCCAT
95022792 CGGTTG
320 CGGTTG
95022798 CATTGAAGCT
Statistics
Matches: 290, Mismatches: 29, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
347 12 0.04
348 209 0.72
349 69 0.24
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (348 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
TGATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGAC
ACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGTTAAAGAAAAGATCTTGCCTTCCTACATTA
ACAGCGAAGCAGATCGAAGACACAAACCTTGCATCCATCGATTGAGATAGAGCTAGTTAAAGAAA
AGATCTTGCCTTCCTACATTAACAGCAAAGCAGATCGAAGAAACAAACCTTGCCTCCATCGGTTG
TGATAGAGCTGGTTGAAGACAAA
Found at i:95022813 original size:86 final size:87
Alignment explanation
Indices: 95022125--95022797 Score: 921
Period size: 86 Copynumber: 7.7 Consensus size: 87
95022115 ATGAAGTTAC
* * *
95022125 AGATCTTGCCTTCCTGCATTGATAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
* *
95022190 TGATGGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTAAAGA-AAA
*
95022213 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
95022278 TGATAGAGCTGGTTAAAG-AAA
66 TGATAGAGCTGGTTAAAGAAAA
*
95022299 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
95022364 TGATAGAGCTGGTTAAAG-AAA
66 TGATAGAGCTGGTTAAAGAAAA
*
95022385 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
95022450 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTAAAGA-AAA
*
95022473 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
95022538 TGATAGAGCTGGTTGAAGACAAA
66 TGATAGAGCTGGTTAAAGA-AAA
* * *
95022561 AGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
* **
95022626 T-AGTGGAGCTGGTTAAAGAAGC
66 TGA-TAGAGCTGGTTAAAGAAAA
* * * ** *
95022648 AGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCATCCATCGATT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
* * * **
95022711 G-CAGTGGAGCTAGTTAAAGAAGC
65 GTGA-TAGAGCTGGTTAAAGAAAA
* * * * **
95022734 AGATCTTGCCTTCCTGTATTAACAGCAAAGCAGATC-AA-AAACAAAGCCTTGCCTCCATCGGTT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
95022797 G
65 G
95022798 CATTGAAGCT
Statistics
Matches: 546, Mismatches: 33, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
85 8 0.01
86 259 0.47
87 37 0.07
88 242 0.44
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (87 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
TGATAGAGCTGGTTAAAGAAAA
Found at i:95023047 original size:43 final size:43
Alignment explanation
Indices: 95022994--95023280 Score: 219
Period size: 43 Copynumber: 6.6 Consensus size: 43
95022984 TAAAGCCAGA
*
95022994 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAT
* * * * * *
95023037 AATCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAAAATAA
1 AATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGACAT
* * * * *
95023079 AGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCA-TCA-
1 A--ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGAAGACAT
** *
95023122 GGTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACACT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACA-T
* *
95023166 -ATCTTATTTCCCTGAGATTACAGTGGAACAGATCGAAGA-ATTT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACA--T
* * * * *
95023209 CAGATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCCAG
1 -A-ATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAT
* *
95023254 AGATCTTATCACCCTAAGATTACAGTG
1 A-ATCTTATCTCCCTGAGATTACAGTG
95023281 AAGCGGATTA
Statistics
Matches: 191, Mismatches: 40, Indels: 25
0.75 0.16 0.10
Matches are distributed among these distances:
41 29 0.15
42 10 0.05
43 65 0.34
44 52 0.27
45 1 0.01
46 33 0.17
47 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAT
Found at i:95023233 original size:46 final size:43
Alignment explanation
Indices: 95022995--95023334 Score: 223
Period size: 44 Copynumber: 7.8 Consensus size: 43
95022985 AAAGCCAGAA
* * *
95022995 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA-CATA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATCA-G
* * * *
95023038 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-CA-G
* * * * *
95023082 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG--CATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGATCAG
* *
95023123 GTCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGA-CACT
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATCA-G
* * *
95023166 ATCTTATTTCCCTGAGATTACAGTGGAACAGATCGAAGAATTTCAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-A--TCAG
* * *
95023212 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCCA-GAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG--ATCAG
* * * * * *
95023256 ATCTTATCACCCTAAGATTACAGTGAAGCGGATT-AAAATAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT-CA-G
* * *
95023300 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATTG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTG
95023335 TATTAGGTCT
Statistics
Matches: 229, Mismatches: 50, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
41 30 0.13
42 8 0.03
43 69 0.30
44 86 0.38
46 33 0.14
47 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (43 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATCAG
Found at i:95023410 original size:218 final size:216
Alignment explanation
Indices: 95022995--95023430 Score: 583
Period size: 218 Copynumber: 2.0 Consensus size: 216
95022985 AAAGCCAGAA
* *
95022995 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAATCCTATCACCCTGAAGTTACA
*
95023060 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
66 GTGAAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
* * * *
95023125 CTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACACTATCTTATTTCCCTGAGATTACAGT
131 CTTACCTCCCTGAGATTACAATGGAGCACATTGAAGACACTATCTTATCTCCCTGAGATTACAGT
*
95023190 GGAACAGATCGAAGAATTTCAG
196 GGAACAGATCGAAG-ATTGCAG
* * * *
95023212 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCACCCT-AAGATTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGA-ATCCTATCACCCTGAAG-TTA
* * *
95023276 CAGTGAAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTATTAG
64 CAGTGAAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
* * * * *
95023341 GTCTTACCTCCCTGTGGTTACAATGGAGTACATTGAAGCCAGTAAT-TCTATCTCCCTG-G-TTG
129 GTCTTACCTCCCTGAGATTACAATGGAGCACATTGAAGACACT-ATCT-TATCTCCCTGAGATT-
* * *
95023403 GCAGTGGAATAGATTGAAGATTGCAG
191 ACAGTGGAACAGATCGAAGATTGCAG
95023429 AT
1 AT
95023431 GCTGTCCTCT
Statistics
Matches: 191, Mismatches: 23, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
217 52 0.27
218 128 0.67
219 11 0.06
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (216 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAATCCTATCACCCTGAAGTTACA
GTGAAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
CTTACCTCCCTGAGATTACAATGGAGCACATTGAAGACACTATCTTATCTCCCTGAGATTACAGT
GGAACAGATCGAAGATTGCAG
Found at i:95025045 original size:14 final size:14
Alignment explanation
Indices: 95025028--95025054 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95025018 TATATTTGCT
95025028 TATATATGTATATA
1 TATATATGTATATA
95025042 TATATATGTATAT
1 TATATATGTATAT
95025055 GTATTTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TATATATGTATATA
Found at i:95025816 original size:19 final size:20
Alignment explanation
Indices: 95025776--95025819 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
95025766 GTCTCTTTAG
* *
95025776 GCATT-CATTTCATACATTT
1 GCATTACATTGCATACATAT
95025795 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATACATAT
95025814 GCATTA
1 GCATTA
95025820 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATACATAT
Found at i:95026265 original size:3 final size:3
Alignment explanation
Indices: 95026252--95026341 Score: 59
Period size: 3 Copynumber: 30.3 Consensus size: 3
95026242 GAGGGCATAT
95026252 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA TATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
95026296 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A-A ATA A-A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
95026338 ATA A
1 ATA A
95026342 AACAAAGCTC
Statistics
Matches: 71, Mismatches: 5, Indels: 22
0.72 0.05 0.22
Matches are distributed among these distances:
2 13 0.18
3 46 0.65
4 10 0.14
5 2 0.03
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:95026278 original size:18 final size:18
Alignment explanation
Indices: 95026248--95026341 Score: 80
Period size: 18 Copynumber: 5.6 Consensus size: 18
95026238 TGGAGAGGGC
95026248 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
95026266 ATATAAATAATAAT-ATA
1 ATATAAATAATAATAATA
*
95026283 TATATGAGA-AATAATAATA
1 -ATAT-AAATAATAATAATA
*
95026302 ATATAAATAATAGTAA-A
1 ATATAAATAATAATAATA
95026319 A-AT-AATAA-AATAA-A
1 ATATAAATAATAATAATA
95026333 ATA-AAATAA
1 ATATAAATAA
95026342 AACAAAGCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
14 6 0.09
15 11 0.17
16 2 0.03
17 10 0.15
18 31 0.48
19 5 0.08
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:95026322 original size:24 final size:24
Alignment explanation
Indices: 95026252--95026332 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 24
95026242 GAGGGCATAT
* *
95026252 ATAATAT-AATAATAATATAAATA
1 ATAATATAAATAATAGTAAAAATA
*
95026275 ATAATATATAT-ATGAG-AAATAATA
1 ATAATATAAATAAT-AGTAAA-AATA
95026299 ATAATATAAATAATAGTAAAAATA
1 ATAATATAAATAATAGTAAAAATA
*
95026323 ATAAAATAAA
1 ATAATATAAA
95026333 ATAAAATAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
23 11 0.23
24 32 0.67
25 5 0.10
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (24 bp):
ATAATATAAATAATAGTAAAAATA
Found at i:95026342 original size:24 final size:27
Alignment explanation
Indices: 95026252--95026343 Score: 78
Period size: 25 Copynumber: 3.8 Consensus size: 27
95026242 GAGGGCATAT
*
95026252 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAATAAAAATAATA
* *
95026278 AT-ATAT--AT-AT--GAGAAATAATA
1 ATAATATAAATAATAATAAAAATAATA
*
95026299 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAATAAAAATAATA
95026326 A-AATA-AAATAA-AATAAAA
1 ATAATATAAATAATAATAAAA
95026344 CAAAGCTCTC
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
21 11 0.20
22 4 0.07
23 2 0.04
24 10 0.18
25 12 0.22
26 6 0.11
27 10 0.18
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (27 bp):
ATAATATAAATAATAATAAAAATAATA
Found at i:95027209 original size:41 final size:42
Alignment explanation
Indices: 95027146--95027231 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 42
95027136 AGACACATGA
* *
95027146 CTTCAATTAATTCCACTAAAACTTCAAGGAGATTTGCTGTAG
1 CTTCAATTAATTCCACTAAAACTTCAAGGAAATCTGCTGTAG
* * *
95027188 CTTCGATTAA-TCCACTGAAACTTCAAGGAAATCTGCTGTGG
1 CTTCAATTAATTCCACTAAAACTTCAAGGAAATCTGCTGTAG
95027229 CTT
1 CTT
95027232 TTAGCTGCTC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 30 0.77
42 9 0.23
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (42 bp):
CTTCAATTAATTCCACTAAAACTTCAAGGAAATCTGCTGTAG
Found at i:95027310 original size:68 final size:68
Alignment explanation
Indices: 95027197--95027467 Score: 479
Period size: 68 Copynumber: 4.0 Consensus size: 68
95027187 GCTTCGATTA
* *
95027197 ATCCACTGAAACTTCAAGGAAATCTGCTGTGGCTTTTAGCTGCTCCAACGCCATTTCAGGGAGAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
95027262 GAG
66 GAG
* * *
95027265 ATTCACTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATATCAGGGAGAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
95027330 GAG
66 GAG
*
95027333 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
95027398 GAG
66 GAG
*
95027401 ATCCACTGAAACTTCAAGGAGATCTTCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
1 ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
95027466 GA
66 GA
95027468 TATTTGATTT
Statistics
Matches: 192, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 192 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (68 bp):
ATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA
GAG
Found at i:95027554 original size:44 final size:44
Alignment explanation
Indices: 95027484--95027723 Score: 170
Period size: 44 Copynumber: 5.5 Consensus size: 44
95027474 ATTTTCAACT
* *
95027484 TGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGATC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATTAATC
* * * ** * *
95027528 TGTTTCCCTACTGCTTAGAGGTTTAAGATCTTGT-AAAATCAACC
1 TGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCATCATTAATC
** * * *
95027572 TGTTACCCTACTGCTTAGGGGTTTAAGGCTCATC-GCCTTCGATC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATT-AATC
* * * * *
95027616 TGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGT-A-AATTTAGTC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTCATCA-TTAATC
* * **
95027659 TGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATC-TTCAATC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATT-AATC
95027703 TGCTT-CCCTACTGCTTAGGGG
1 TG-TTACCCTACTGCTTAGGGG
95027724 GTTGCGATCT
Statistics
Matches: 146, Mismatches: 39, Indels: 22
0.71 0.19 0.11
Matches are distributed among these distances:
43 34 0.23
44 105 0.72
45 7 0.05
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCATCATTAATC
Found at i:95027677 original size:87 final size:87
Alignment explanation
Indices: 95027477--95027739 Score: 330
Period size: 87 Copynumber: 3.0 Consensus size: 87
95027467 ATATTTGATT
* * ** *
95027477 TTCAACTTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GATCTGTTTCCCTACTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCA-CCTTCGATCTGTTTCCCTACTG
* *
95027541 CTTAGAGGTTTAAGATCTTGTAAA
65 CTTAGGGGGTTAAGATC-TGTAAA
* *
95027565 ATCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGC
95027630 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* ** * * * * *
95027652 TTTAGTCTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATCTTCAATCTGCTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGC
**
95027717 TTAGGGGGTTGCGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
95027739 T
1 T
95027740 CTTCAATCTG
Statistics
Matches: 153, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
87 85 0.56
88 68 0.44
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:95027890 original size:43 final size:43
Alignment explanation
Indices: 95027840--95027999 Score: 151
Period size: 44 Copynumber: 3.7 Consensus size: 43
95027830 TTTCAGCCTA
* * *
95027840 TTACCCTACTACTGAGGGGGTTAAGGTCTATAAATTTGGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGGTCTATAAATTTAGCTTG
* * * * * *
95027883 TTACCCTACTGCTTAGGAGGTTAAAG-CTCATTATTTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGGTCT-ATAAATTTAGCT-TG
* * * * *
95027927 TTTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGGTCTAT-AAATTTAGCTTG
95027971 TTACCCTACTGCTTAGGGGGTTAAAGGTC
1 TTACCCTACTGCTTAGGGGGTT-AAGGTC
95028000 GTTGCCTTCG
Statistics
Matches: 90, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
42 2 0.02
43 30 0.33
44 45 0.50
45 13 0.14
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (43 bp):
TTACCCTACTGCTTAGGGGGTTAAGGTCTATAAATTTAGCTTG
Found at i:95028010 original size:88 final size:86
Alignment explanation
Indices: 95027837--95028047 Score: 226
Period size: 88 Copynumber: 2.4 Consensus size: 86
95027827 AATTTTCAGC
* * * * *
95027837 CTATTACCCTACTACTGAGGGGGTTAAGGTCTAT-AAATTTGGCTTGTTACCCTACTGCTTAGGA
1 CTATTCCCCTACTGCTTA-GGGG-TAAGATCTATGAAATTTAGCTTGTTACCCTACTGCTTAGGA
**
95027901 GGTTAAAGCTCATTATTTTCGAT
64 GGTTAAAGCTCATTACCTTCGAT
* * * *
95027924 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTACCCTACTGCTTAGGG
1 CTATTCCCCTACTGCTTAGGG-G-TAAGATCTATGAAATTTAGCTTGTTACCCTACTGCTTAGGA
* * *
95027989 GGTTAAAGGTCGTTGCCTTCGAT
64 GGTTAAAGCTCATTACCTTCGAT
* *
95028012 CTATTCCCCTATTGCTTATGGGGTAAGATCTGTGAA
1 CTATTCCCCTACTGCTTA-GGGGTAAGATCTATGAA
95028048 TTCACTGGTT
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
86 3 0.03
87 36 0.35
88 61 0.59
89 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (86 bp):
CTATTCCCCTACTGCTTAGGGGTAAGATCTATGAAATTTAGCTTGTTACCCTACTGCTTAGGAGG
TTAAAGCTCATTACCTTCGAT
Found at i:95048612 original size:3 final size:3
Alignment explanation
Indices: 95048604--95048654 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
95048594 AATAGGGGTG
*
95048604 ATA ATA ATA ATA ATA CTA ATA CA-A ATA ATA ATA CATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA ATA
95048652 ATA
1 ATA
95048655 GTAGTCAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
2 1 0.02
3 30 0.71
4 11 0.26
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:95048758 original size:30 final size:32
Alignment explanation
Indices: 95048724--95048789 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 32
95048714 TGGAGAGGGC
95048724 ATATATA-AT-ATAATAATAATATAAATAATA
1 ATATATACATAATAATAATAATATAAATAATA
95048754 ATATATACATGAGAAATAATAATAATATAAATAATA
1 ATATATACAT----AATAATAATAATATAAATAATA
95048790 GTAAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 7 0.23
31 2 0.07
36 21 0.70
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (32 bp):
ATATATACATAATAATAATAATATAAATAATA
Found at i:95052761 original size:6 final size:6
Alignment explanation
Indices: 95052752--95052782 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
95052742 AAAGAGTCCA
*
95052752 ACCATC ACCACC ACCATC ACCATC ACCATC A
1 ACCATC ACCATC ACCATC ACCATC ACCATC A
95052783 TCTTCCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.35, C:0.52, G:0.00, T:0.13
Consensus pattern (6 bp):
ACCATC
Found at i:95054139 original size:16 final size:16
Alignment explanation
Indices: 95054115--95054148 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
95054105 ATATAAAAAC
*
95054115 TAAATTAAATTATAAA
1 TAAAATAAATTATAAA
*
95054131 TAAAATAAATTTTAAA
1 TAAAATAAATTATAAA
95054147 TA
1 TA
95054149 CATAAATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAATAAATTATAAA
Found at i:95055141 original size:16 final size:16
Alignment explanation
Indices: 95055120--95055150 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95055110 AAAATATTTT
*
95055120 TTATAAAGTTTATATA
1 TTATAAAATTTATATA
95055136 TTATAAAATTTATAT
1 TTATAAAATTTATAT
95055151 TAATTTCAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TTATAAAATTTATATA
Found at i:95058112 original size:87 final size:87
Alignment explanation
Indices: 95057966--95058125 Score: 259
Period size: 87 Copynumber: 1.8 Consensus size: 87
95057956 AATAGCATGT
* *
95057966 TTATAAATCATTTGGATAACTAATTTTGACACTTGATTTGTATATGCATTGCTTTCAAATCATGT
1 TTATAAATCATTTGGATAACTAATTATGACACTTGATTCGTATATGCATTGCTTTCAAATCATGT
95058031 TAGAACCATTGAGCTCTTTTGC
66 TAGAACCATTGAGCTCTTTTGC
* *
95058053 TTATAAATTATTTGGATAACTAAATTATG-TACTTGATTCGTATATGCATTGCTTTCAAATCATG
1 TTATAAATCATTTGGATAACT-AATTATGACACTTGATTCGTATATGCATTGCTTTCAAATCATG
*
95058117 TTAGCACCA
65 TTAGAACCA
95058126 CCAACTCTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
87 61 0.91
88 6 0.09
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (87 bp):
TTATAAATCATTTGGATAACTAATTATGACACTTGATTCGTATATGCATTGCTTTCAAATCATGT
TAGAACCATTGAGCTCTTTTGC
Found at i:95062798 original size:6 final size:6
Alignment explanation
Indices: 95062787--95062820 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
95062777 CTCCATTCAG
* *
95062787 AGAAGT AGAAGT AGAAGT AGAACT AGAACT AGAA
1 AGAAGT AGAAGT AGAAGT AGAAGT AGAAGT AGAA
95062821 CGGTCAAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.53, C:0.06, G:0.26, T:0.15
Consensus pattern (6 bp):
AGAAGT
Found at i:95064779 original size:18 final size:18
Alignment explanation
Indices: 95064738--95064779 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
95064728 AAGGGTTAAG
95064738 TATTAATTTACAATAATTA
1 TATT-ATTTACAATAATTA
*
95064757 CATTATTTA-AATAAATTA
1 TATTATTTACAAT-AATTA
95064775 TATTA
1 TATTA
95064780 AAATTTCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.15
18 14 0.70
19 3 0.15
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (18 bp):
TATTATTTACAATAATTA
Found at i:95066128 original size:2 final size:2
Alignment explanation
Indices: 95066123--95066165 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
95066113 GTGTATATCT
95066123 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
95066165 A
1 A
95066166 CCTCTTCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:95092629 original size:33 final size:33
Alignment explanation
Indices: 95092587--95092653 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
95092577 TTGAATCTGT
95092587 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
1 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
95092620 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
1 TTGTGAATCAATTCACTTGTGACGTTCATAGTG
95092653 T
1 T
95092654 GATTTACCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (33 bp):
TTGTGAATCAATTCACTTGTGACGTTCATAGTG
Done.