Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 299 of 318
Found at i:95099513 original size:47 final size:47
Alignment explanation
Indices: 95099450--95099579 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
95099440 GTGCAAATAA
* * * *
95099450 TACCTTGATTTGGCTACGGGCCATGATATAGGTA-TTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGA-AGAAGT
*
95099497 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGAATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGAAGAAGT
* * *
95099544 TAGCTTGATTTGGCTACAGGTCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
95099580 TATCAATTGT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 70 0.95
48 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGAAGAAGT
Found at i:95101570 original size:24 final size:24
Alignment explanation
Indices: 95101519--95101574 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
95101509 TCTTAATTAA
* *
95101519 AAGTCCCTTGGTTAAATAATCATT
1 AAGTCCCTTGGTTAAATAATAATC
* **
95101543 AAGTCCCTTGGTTAATTGCTAATC
1 AAGTCCCTTGGTTAAATAATAATC
95101567 AAGTCCCT
1 AAGTCCCT
95101575 GTATATTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (24 bp):
AAGTCCCTTGGTTAAATAATAATC
Found at i:95112005 original size:2 final size:2
Alignment explanation
Indices: 95111998--95112032 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95111988 TTTAACGCAA
95111998 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
95112033 AAATAAGATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:95118020 original size:30 final size:32
Alignment explanation
Indices: 95117960--95118023 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
95117950 CACTTATTTT
95117960 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
95117993 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
95118024 ATATACATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:95118287 original size:41 final size:41
Alignment explanation
Indices: 95118242--95118397 Score: 285
Period size: 41 Copynumber: 3.8 Consensus size: 41
95118232 ACCGGCTCTT
*
95118242 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
95118283 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
95118324 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
* *
95118365 AGCCTGCTAGACTTATAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
95118398 TAACGATAAA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 112 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:95120344 original size:37 final size:37
Alignment explanation
Indices: 95120303--95120476 Score: 280
Period size: 37 Copynumber: 4.8 Consensus size: 37
95120293 TTTGAGTACT
95120303 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
95120340 TCTGAT--AGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
95120375 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
95120412 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
95120449 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
95120477 TAGCTTCAGC
Statistics
Matches: 130, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
35 34 0.26
37 96 0.74
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:95120548 original size:45 final size:46
Alignment explanation
Indices: 95120439--95120562 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
95120429 GTGATAAGTG
* *
95120439 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
95120485 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
95120530 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
95120563 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:95128041 original size:37 final size:37
Alignment explanation
Indices: 95128000--95128175 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
95127990 TTTGAGTACT
95128000 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
95128037 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
95128074 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
95128111 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
95128148 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
95128176 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:95128247 original size:45 final size:46
Alignment explanation
Indices: 95128138--95128261 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
95128128 GTGATAAGTG
* *
95128138 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
95128184 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
95128229 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
95128262 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:95133126 original size:18 final size:17
Alignment explanation
Indices: 95133099--95133132 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
95133089 TTGTACCCAC
*
95133099 AAATTTTGAGTCGAAAGA
1 AAATTCTGAGTC-AAAGA
95133117 AAATTCTGAGTCAAAG
1 AAATTCTGAGTCAAAG
95133133 TTATTGATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (17 bp):
AAATTCTGAGTCAAAGA
Found at i:95138267 original size:24 final size:23
Alignment explanation
Indices: 95138240--95138284 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
95138230 GCAAAACACT
* *
95138240 GACAGCTGCACAAGAAAATTATAC
1 GACAACTG-ACAAAAAAATTATAC
*
95138264 GACAACTGAGAAAAAAATTAT
1 GACAACTGACAAAAAAATTAT
95138285 TGGTTGTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (23 bp):
GACAACTGACAAAAAAATTATAC
Found at i:95139986 original size:23 final size:23
Alignment explanation
Indices: 95139956--95140000 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
95139946 CCTCAATAAC
95139956 TTAGTTTGTTTTTCCTTTTTTTT
1 TTAGTTTGTTTTTCCTTTTTTTT
95139979 TTAGTTTGTTTTTCCTTTTTTT
1 TTAGTTTGTTTTTCCTTTTTTT
95140001 GTTTTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.04, C:0.09, G:0.09, T:0.78
Consensus pattern (23 bp):
TTAGTTTGTTTTTCCTTTTTTTT
Found at i:95146703 original size:46 final size:46
Alignment explanation
Indices: 95146648--95146740 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
95146638 GGAAACAGGG
*
95146648 CATACATACTGACTTGGGTTACACGGCCAACCACACACCCGTGTGT
1 CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
95146694 CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
1 CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
95146740 C
1 C
95146741 TAACCCGTGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (46 bp):
CATACATACTGACTTGGGTTACACAGCCAACCACACACCCGTGTGT
Found at i:95154102 original size:19 final size:19
Alignment explanation
Indices: 95154066--95154104 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
95154056 TCTTCATCAT
* *
95154066 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
95154085 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
95154104 A
1 A
95154105 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:95154609 original size:55 final size:55
Alignment explanation
Indices: 95154550--95154658 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 55
95154540 GCTGCCAGGT
* * *
95154550 ACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCACCAGA
1 ACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCACCAGA
* * *
95154605 ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
95154659 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 1 0.02
55 29 0.63
56 16 0.35
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (55 bp):
ACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAGA
Found at i:95154655 original size:28 final size:27
Alignment explanation
Indices: 95154569--95154658 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
95154559 GTGACAGAGT
*
95154569 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
95154598 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
95154625 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
95154653 CACCAG
1 CACCAG
95154659 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:95155765 original size:12 final size:13
Alignment explanation
Indices: 95155746--95155778 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
95155736 GGGTTCGGCT
95155746 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
95155759 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
95155771 ATGGAGAA
1 ATGGAGAA
95155779 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:95155819 original size:13 final size:13
Alignment explanation
Indices: 95155789--95155813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95155779 AAAGAAAATA
95155789 AAGAAAAGATGAG
1 AAGAAAAGATGAG
95155802 AAGAAAAGATGA
1 AAGAAAAGATGA
95155814 TCAGAATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (13 bp):
AAGAAAAGATGAG
Found at i:95161813 original size:19 final size:19
Alignment explanation
Indices: 95161777--95161815 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
95161767 TCTTCATCAT
* *
95161777 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
95161796 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
95161815 A
1 A
95161816 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:95162334 original size:28 final size:27
Alignment explanation
Indices: 95162248--95162337 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
95162238 GTGACAGAGT
*
95162248 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
95162277 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
95162304 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
95162332 CACCAG
1 CACCAG
95162338 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:95162490 original size:28 final size:28
Alignment explanation
Indices: 95162443--95162507 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
95162433 AAATTAACCC
*
95162443 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
95162471 TAGGGGTATGATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
95162499 TAGGGGTAT
1 TAGGGGTAT
95162508 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:95163597 original size:12 final size:13
Alignment explanation
Indices: 95163578--95163610 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
95163568 GGGTTCGGCT
95163578 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
95163591 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
95163603 ATGGAGAA
1 ATGGAGAA
95163611 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:95164916 original size:12 final size:12
Alignment explanation
Indices: 95164899--95164924 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
95164889 CACACACGTT
95164899 CGTGTGCTAGGC
1 CGTGTGCTAGGC
95164911 CGTGTGCTAGGC
1 CGTGTGCTAGGC
95164923 CG
1 CG
95164925 CGCCAATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.42, T:0.23
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:95166135 original size:17 final size:18
Alignment explanation
Indices: 95166115--95166151 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
95166105 TTTCTTTATG
95166115 TTTTGT-TGTTTTCCTAT
1 TTTTGTATGTTTTCCTAT
95166132 TTTTGTGATGTTTTCCTAT
1 TTTTGT-ATGTTTTCCTAT
95166151 T
1 T
95166152 ACATTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.08, C:0.11, G:0.14, T:0.68
Consensus pattern (18 bp):
TTTTGTATGTTTTCCTAT
Found at i:95168824 original size:15 final size:15
Alignment explanation
Indices: 95168804--95168836 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
95168794 TATGTTGCGC
*
95168804 TTTTTTT-GTCCTTT
1 TTTTTTTGGTCATTT
95168818 TTTTTTTGGTCATTT
1 TTTTTTTGGTCATTT
95168833 TTTT
1 TTTT
95168837 AGTCTCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.03, C:0.09, G:0.09, T:0.79
Consensus pattern (15 bp):
TTTTTTTGGTCATTT
Found at i:95169170 original size:42 final size:44
Alignment explanation
Indices: 95169067--95169173 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 44
95169057 TCAATTTCGA
* *
95169067 TTTTTCAACATCGACGTGGTACAACAGAGAATTAATCCTTATTT
1 TTTTTCAACATCGACATGGTACAACAGAGAATCAATCCTTATTT
* ** *
95169111 TTTTTCAACATCAACATGGTACAATGGAG-ATCAATTCTT-TTT
1 TTTTTCAACATCGACATGGTACAACAGAGAATCAATCCTTATTT
*
95169153 TTTTTTAACATCGACATGGTA
1 TTTTTCAACATCGACATGGTA
95169174 AGGTAGAGAC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 22 0.40
43 8 0.15
44 25 0.45
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (44 bp):
TTTTTCAACATCGACATGGTACAACAGAGAATCAATCCTTATTT
Found at i:95169464 original size:70 final size:70
Alignment explanation
Indices: 95169274--95169472 Score: 233
Period size: 70 Copynumber: 2.8 Consensus size: 70
95169264 AAAATGGCGA
* * *
95169274 GAAGAGCTTTTGCAACTTCAACATGGCTAGAGGAGGGCCCATTCCGAACTTTGCAACATCAACAT
1 GAAGAACTTTTGCAACTTCAACATGACTAGAGGAGGGCCCATTCTGAACTTTGCAACATCAACAT
95169339 GGAAG
66 GGAAG
* ** * * *
95169344 AAAGAACTTTTGCAACTTCAACATGA-TGAGAGGAGAACCTA-TCTCGAACTTTGTAACTTCAAC
1 GAAGAACTTTTGCAACTTCAACATGACT-AGAGGAGGGCCCATTCT-GAACTTTGCAACATCAAC
95169407 AT-GAAGG
64 ATGGAA-G
* * * *
95169414 GAAGAACTTTTGCAACTTCAACGTGACTAGAGGAGGGCCGATTCTAAACTTCGCAACAT
1 GAAGAACTTTTGCAACTTCAACATGACTAGAGGAGGGCCCATTCTGAACTTTGCAACAT
95169473 TAAAACAGTT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
69 6 0.06
70 96 0.91
71 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (70 bp):
GAAGAACTTTTGCAACTTCAACATGACTAGAGGAGGGCCCATTCTGAACTTTGCAACATCAACAT
GGAAG
Found at i:95184769 original size:25 final size:25
Alignment explanation
Indices: 95184726--95184774 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
95184716 CATATCACAG
*
95184726 CTCTTTATGAGCATTTTGACATAGA
1 CTCTTTATGAGCATTTTGAAATAGA
*
95184751 CTCTTTGTGAGC-TTCTTGAAATAG
1 CTCTTTATGAGCATT-TTGAAATAG
95184775 CTCGCTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (25 bp):
CTCTTTATGAGCATTTTGAAATAGA
Found at i:95187437 original size:13 final size:13
Alignment explanation
Indices: 95187407--95187449 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
95187397 TTATCCTTCT
95187407 TTTCTTTATTTATT-
1 TTTCTTT-TTT-TTC
95187421 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
*
95187434 TTTCTTCTTTTTC
1 TTTCTTTTTTTTC
95187447 TTT
1 TTT
95187450 TAATTTGCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 2 0.07
13 18 0.67
14 7 0.26
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:95193927 original size:7 final size:7
Alignment explanation
Indices: 95193915--95193944 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
95193905 AATCAGTTTG
95193915 GAATCTT
1 GAATCTT
95193922 GAATCTT
1 GAATCTT
95193929 GAATCTT
1 GAATCTT
95193936 GAATCTT
1 GAATCTT
95193943 GA
1 GA
95193945 TAGAGAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (7 bp):
GAATCTT
Found at i:95197689 original size:9 final size:9
Alignment explanation
Indices: 95197675--95197769 Score: 118
Period size: 9 Copynumber: 10.6 Consensus size: 9
95197665 ATAAGTATAA
95197675 AATTAACCG
1 AATTAACCG
*
95197684 AATTAACCT
1 AATTAACCG
*
95197693 AATTAATCG
1 AATTAACCG
*
95197702 AATTAACAG
1 AATTAACCG
*
95197711 AATTACCCG
1 AATTAACCG
*
95197720 AATTACCCG
1 AATTAACCG
* *
95197729 AATTACCCA
1 AATTAACCG
95197738 AATTAACCG
1 AATTAACCG
95197747 AATTAACCG
1 AATTAACCG
*
95197756 AATTAACCA
1 AATTAACCG
95197765 AATTA
1 AATTA
95197770 TTTGTATAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 75 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:95197804 original size:5 final size:6
Alignment explanation
Indices: 95197789--95197858 Score: 79
Period size: 6 Copynumber: 11.2 Consensus size: 6
95197779 AATTATATGT
*
95197789 TTTTTA TTTTTA TTTTTA GTTTTAAA TTTTTA TTTTTA TTTTTA TTTATTAA
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTTTTA TTT-TT-A
*
95197841 TTTTT- TTTTAA TTTTTA T
1 TTTTTA TTTTTA TTTTTA T
95197859 GATTGGGTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
5 4 0.07
6 34 0.62
7 12 0.22
8 5 0.09
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:95197825 original size:26 final size:26
Alignment explanation
Indices: 95197789--95197858 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
95197779 AATTATATGT
95197789 TTTTTATTTTTATTTTTAGTTT-TAAA
1 TTTTTATTTTTATTTTTA-TTTATAAA
*
95197815 TTTTTATTTTTATTTTTATTTATTAA
1 TTTTTATTTTTATTTTTATTTATAAA
*
95197841 TTTTT-TTTTAATTTTTAT
1 TTTTTATTTTTATTTTTAT
95197859 GATTGGGTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
25 15 0.37
26 26 0.63
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (26 bp):
TTTTTATTTTTATTTTTATTTATAAA
Found at i:95197843 original size:20 final size:18
Alignment explanation
Indices: 95197789--95197858 Score: 79
Period size: 20 Copynumber: 3.7 Consensus size: 18
95197779 AATTATATGT
*
95197789 TTTTTATTTTTATTTTTA
1 TTTTAATTTTTATTTTTA
95197807 GTTTTAAATTTTTATTTTTA
1 -TTTT-AATTTTTATTTTTA
*
95197827 TTTTTATTTATTAATTTTT-
1 TTTTAATTT-TT-ATTTTTA
95197846 TTTTAATTTTTAT
1 TTTTAATTTTTAT
95197859 GATTGGGTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
17 2 0.04
18 6 0.13
19 18 0.40
20 19 0.42
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (18 bp):
TTTTAATTTTTATTTTTA
Found at i:95198559 original size:17 final size:17
Alignment explanation
Indices: 95198537--95198571 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
95198527 AGTACCGAGT
95198537 CAGTTTGGATTGCGCAA
1 CAGTTTGGATTGCGCAA
95198554 CAGTTTGGATTGCGCAA
1 CAGTTTGGATTGCGCAA
95198571 C
1 C
95198572 TAAGAGGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (17 bp):
CAGTTTGGATTGCGCAA
Found at i:95206427 original size:14 final size:14
Alignment explanation
Indices: 95206408--95206435 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95206398 TTTTCGCTTT
95206408 ATTACTTTATTTGC
1 ATTACTTTATTTGC
95206422 ATTACTTTATTTGC
1 ATTACTTTATTTGC
95206436 GTTTGATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (14 bp):
ATTACTTTATTTGC
Found at i:95208576 original size:20 final size:20
Alignment explanation
Indices: 95208551--95208596 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
95208541 AAAAAGTTCA
95208551 GTTAATACTAG-TTCAATTCG
1 GTTAATACTAGTTTC-ATTCG
95208571 GTTAATACTAGTTTCATTCG
1 GTTAATACTAGTTTCATTCG
95208591 GTTAAT
1 GTTAAT
95208597 CATTTGAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
GTTAATACTAGTTTCATTCG
Found at i:95228007 original size:60 final size:60
Alignment explanation
Indices: 95227921--95228133 Score: 320
Period size: 60 Copynumber: 3.6 Consensus size: 60
95227911 AAAATCCAAG
* *
95227921 ATAGTTGGGTGA-CAAAAAAAAAATTGACTAATAGTTCAGTGACCATTTTGTAACTATTC
1 ATAGTTGGGTGATCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
* * * * *
95227980 ATAGCTGGGTGACCAAAAAAGAAATTGACTAATAATTGGGTGACTATTTTGTAACTATTC
1 ATAGTTGGGTGATCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
* *
95228040 ATAATTGGGTGATCAAAAAAGAAATTGACTAATAGTTGAGTGATCATTTTGTAACTATTC
1 ATAGTTGGGTGATCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
* *
95228100 ATAGTTGAGTGATCAAAAAAGAAATTTACTAATA
1 ATAGTTGGGTGATCAAAAAAGAAATTGACTAATA
95228134 TTTAAGCGAC
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
59 11 0.08
60 126 0.92
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (60 bp):
ATAGTTGGGTGATCAAAAAAGAAATTGACTAATAGTTGAGTGACCATTTTGTAACTATTC
Found at i:95234750 original size:19 final size:19
Alignment explanation
Indices: 95234726--95234763 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
95234716 TAATTTAGTG
95234726 TTTAATAAAATTAATTAAC
1 TTTAATAAAATTAATTAAC
95234745 TTTAATAAAATTAATTAAC
1 TTTAATAAAATTAATTAAC
95234764 ATGTTGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTAATAAAATTAATTAAC
Found at i:95240271 original size:20 final size:22
Alignment explanation
Indices: 95240232--95240272 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
95240222 AAAGTGAAAT
*
95240232 TTGTATAAAAATATAGAATTAA
1 TTGTATAAAAATATAAAATTAA
95240254 TTGTA-AAAAATA-AAAATTA
1 TTGTATAAAAATATAAAATTA
95240273 GTCTCGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (22 bp):
TTGTATAAAAATATAAAATTAA
Found at i:95242209 original size:33 final size:33
Alignment explanation
Indices: 95242167--95242239 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
95242157 CAATCCCTCT
*
95242167 AACACACCAATGCTCATAAGAGTTAAT-CAGACC
1 AACACACCAATGCTCATAAGAGCTAATCCA-ACC
95242200 AACACACCAATGCTCATAAGAGCTAATCCAACC
1 AACACACCAATGCTCATAAGAGCTAATCCAACC
95242233 AACACAC
1 AACACAC
95242240 TAAACAGAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 36 0.95
34 2 0.05
ACGTcount: A:0.44, C:0.32, G:0.10, T:0.15
Consensus pattern (33 bp):
AACACACCAATGCTCATAAGAGCTAATCCAACC
Found at i:95244805 original size:13 final size:13
Alignment explanation
Indices: 95244789--95244821 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
95244779 CAATGCTTTT
95244789 GAAAAGTGCTATG
1 GAAAAGTGCTATG
95244802 GAAAAGTGCTATG
1 GAAAAGTGCTATG
95244815 GAAAAGT
1 GAAAAGT
95244822 ACTTTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.42, C:0.06, G:0.30, T:0.21
Consensus pattern (13 bp):
GAAAAGTGCTATG
Found at i:95244811 original size:26 final size:26
Alignment explanation
Indices: 95244780--95244847 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
95244770 CTAGTTTGAC
*
95244780 AATGCTTTTGAAAAGTGCTATGGA-A
1 AATGCTTTTGAAAAGTACTATGGAGA
* * * *
95244805 AAGTGCTATGGAAAAGTACTTTTGAGA
1 AA-TGCTTTTGAAAAGTACTATGGAGA
*
95244832 AATGTTTTTGAAAAGT
1 AATGCTTTTGAAAAGT
95244848 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
25 2 0.06
26 28 0.85
27 3 0.09
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.34
Consensus pattern (26 bp):
AATGCTTTTGAAAAGTACTATGGAGA
Found at i:95249458 original size:21 final size:22
Alignment explanation
Indices: 95249429--95249475 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
95249419 CAGAAGGAGT
*
95249429 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
95249451 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
95249472 GAGT
1 GAGT
95249476 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:95253355 original size:21 final size:18
Alignment explanation
Indices: 95253307--95253351 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
95253297 TTCAAGAAAT
95253307 ATAATAATTTAATTTTAA
1 ATAATAATTTAATTTTAA
95253325 ATAATAATTTAATTTTAA
1 ATAATAATTTAATTTTAA
*
95253343 ACAATAATT
1 ATAATAATT
95253352 ATTTTAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAATAATTTAATTTTAA
Found at i:95255170 original size:26 final size:26
Alignment explanation
Indices: 95255141--95255193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
95255131 AGAACAAGAA
**
95255141 TTAAAGGATGATTGAAAAAAATTCTT
1 TTAAAGGATGATAAAAAAAAATTCTT
95255167 TTAAAGGATGATAAAAAAAAATTCTT
1 TTAAAGGATGATAAAAAAAAATTCTT
95255193 T
1 T
95255194 CTTTTGGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.34
Consensus pattern (26 bp):
TTAAAGGATGATAAAAAAAAATTCTT
Found at i:95258780 original size:46 final size:44
Alignment explanation
Indices: 95258721--95258835 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
95258711 ACAGGACAGA
* *
95258721 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
95258767 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
95258811 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
95258836 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:95258816 original size:44 final size:45
Alignment explanation
Indices: 95258721--95258854 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
95258711 ACAGGACAGA
* *
95258721 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
95258767 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
95258811 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
95258855 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:95260445 original size:21 final size:21
Alignment explanation
Indices: 95260419--95260459 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
95260409 ATCTGCTCAA
* *
95260419 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
95260440 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
95260460 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:95273072 original size:7 final size:7
Alignment explanation
Indices: 95273060--95273093 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
95273050 AGTCTTGATT
95273060 ATTAAAA
1 ATTAAAA
95273067 ATTAAAA
1 ATTAAAA
*
95273074 TTTAAAA
1 ATTAAAA
95273081 ATTAAAA
1 ATTAAAA
95273088 A-TAAAA
1 ATTAAAA
95273094 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATTAAAA
Found at i:95273157 original size:20 final size:20
Alignment explanation
Indices: 95273116--95273161 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
95273106 TCATTTTTCA
**
95273116 ATAAAAATACATAAGATTTT
1 ATAAAAATACATAAGAAATT
95273136 ATAAAAATACATATA-AAATT
1 ATAAAAATACATA-AGAAATT
95273156 ATAAAA
1 ATAAAA
95273162 GAAATATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
ATAAAAATACATAAGAAATT
Found at i:95273267 original size:20 final size:20
Alignment explanation
Indices: 95273223--95273260 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
95273213 ATTTATTTCT
*
95273223 TAAAATAAAAATTTTATAAA
1 TAAAATAAAAATCTTATAAA
*
95273243 TAAAATAATAATCTTATA
1 TAAAATAAAAATCTTATA
95273261 CGTAAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATAAAAATCTTATAAA
Found at i:95273857 original size:22 final size:22
Alignment explanation
Indices: 95273831--95273878 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
95273821 AAAAATAAGT
95273831 ATGTATTTATTTATAATTTTGA
1 ATGTATTTATTTATAATTTTGA
*
95273853 ATGTATTTATTTATAATTTTGC
1 ATGTATTTATTTATAATTTTGA
95273875 ATGT
1 ATGT
95273879 GTTTTATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.58
Consensus pattern (22 bp):
ATGTATTTATTTATAATTTTGA
Found at i:95275673 original size:22 final size:23
Alignment explanation
Indices: 95275648--95275693 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
95275638 ATAATTGCTT
95275648 TTATAGATATATACATATA-TTA
1 TTATAGATATATACATATACTTA
* * *
95275670 TTATATATTTTTACATATACTTA
1 TTATAGATATATACATATACTTA
95275693 T
1 T
95275694 ACACATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (23 bp):
TTATAGATATATACATATACTTA
Found at i:95275701 original size:22 final size:22
Alignment explanation
Indices: 95275659--95275703 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
95275649 TATAGATATA
* *
95275659 TACATATATTATTATATATTTT
1 TACATATATTATTACACATTTT
95275681 TACATATACTTA-TACACATTTT
1 TACATATA-TTATTACACATTTT
95275703 T
1 T
95275704 TTGTAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (22 bp):
TACATATATTATTACACATTTT
Found at i:95275825 original size:24 final size:24
Alignment explanation
Indices: 95275798--95275852 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
95275788 ATTTCTAACC
95275798 TTTATAAATATATAAATACATATT
1 TTTATAAATATATAAATACATATT
* * **
95275822 TTTACATATATATATGTACATATT
1 TTTATAAATATATAAATACATATT
95275846 TTATATA
1 TT-TATA
95275853 TTTTATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (24 bp):
TTTATAAATATATAAATACATATT
Found at i:95280565 original size:24 final size:24
Alignment explanation
Indices: 95280538--95280592 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
95280528 CAATTCTCAT
95280538 AATATAAAT-TTTAAAAAATTATAA
1 AATATAAATATTTAAAAAATT-TAA
* *
95280562 AATAT-ATTATTTAATAAATTTAA
1 AATATAAATATTTAAAAAATTTAA
*
95280585 AAAATAAA
1 AATATAAA
95280593 CAAGTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATAAATATTTAAAAAATTTAA
Found at i:95282720 original size:110 final size:110
Alignment explanation
Indices: 95282526--95282799 Score: 464
Period size: 109 Copynumber: 2.5 Consensus size: 110
95282516 ATTGGTATAC
*
95282526 AAAATACGAGTTTTAAAAAAAAAAATTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACA
1 AAAATACGAGTTTT-AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACA
*
95282591 AAAAAAATTTCGAAATTTTTTTCAAAA-TTTTTTTTTTGCTCTCTA
65 AAAAAAAATTCGAAATTTTTTTCAAAATTTTTTTTTTTGCTCTCTA
* *
95282636 AAAATACGAGTTTTAAAAAAAATTTTGGGTGCTGGCTTGTCAATGGCCGGCACCCAGTACAACAA
1 AAAATACGAGTTTTAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACAA
95282701 AAAAAAATTC-AAATTTTTTTTCAAAATTTTTTTTTTTTGCTCTCTA
66 AAAAAAATTCGAAA-TTTTTTTCAAAA-TTTTTTTTTTTGCTCTCTA
95282747 AAAATACGAG-TTTAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACC
1 AAAATACGAGTTTTAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACC
95282800 AAATTTATGA
Statistics
Matches: 155, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
108 3 0.02
109 69 0.45
110 55 0.35
111 28 0.18
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (110 bp):
AAAATACGAGTTTTAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACAA
AAAAAAATTCGAAATTTTTTTCAAAATTTTTTTTTTTGCTCTCTA
Found at i:95284843 original size:31 final size:31
Alignment explanation
Indices: 95284780--95284859 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 31
95284770 GATCGCAACA
* * * *
95284780 ATTTTAAATTTTTTCTGTTAATTTTTACTTT
1 ATTTTAAAATTATTCTGTAAATATTTACTTT
95284811 ATTTTAAAATTATTCTGTAAATATTT-CTTTT
1 ATTTTAAAATTATTCTGTAAATATTTAC-TTT
** *
95284842 ATAATGAAATTATTCTGT
1 ATTTTAAAATTATTCTGT
95284860 TTTTTAATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 1 0.02
31 40 0.98
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.59
Consensus pattern (31 bp):
ATTTTAAAATTATTCTGTAAATATTTACTTT
Found at i:95286703 original size:53 final size:53
Alignment explanation
Indices: 95286622--95286772 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 53
95286612 CTTACACGGT
* * *
95286622 TCACATATCATACCGAAGCCATATCCCAGGC-ATGGTCTTATACGGAATCATATTA
1 TCACAT-T-ATACCGATGCCATAGCCCA-GCTATGGTCTTATACGGAATCACATTA
*
95286677 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** * * *
95286730 TCACATTGCACTGATGCCATAGCCCAACTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
95286773 GCACACTTAC
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.02
53 77 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:95288454 original size:106 final size:108
Alignment explanation
Indices: 95288313--95288700 Score: 585
Period size: 107 Copynumber: 3.6 Consensus size: 108
95288303 TATAAGGTTT
* * *
95288313 GGTGCCGGCCAATGACAGGGCAGCACTCAAA-TTTTTTTTT-AAACTCGTATTTTTAGAGAGCAA
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGC-A
95288376 AAAAAAAATTTTGAAAAAAAATTCAAATTTTTTTTGTTGTACTG
65 AAAAAAAATTTTGAAAAAAAATTCAAATTTTTTTTGTTGTACTG
* * * *
95288420 GGTGTCGG-CATTGACAGGCCACCACCCAAATTTTTTTTTTTAAAATTCGTATTTTTAAAGAGC-
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAA-TTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
*
95288483 AAAAAAAA-TTTGAAAAAAAAATTC-GATTTTTTTTGTTGTACTG
65 AAAAAAAATTTTG-AAAAAAAATTCAAATTTTTTTTGTTGTACTG
*
95288526 GGTGCCGGCCATTGACAAGCCAGCA-CCAAA-TTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
*
95288589 AAAAAAATTTTGAAAAAAAATTCGAATTTTTTTTTGTTGTACTG
66 AAAAAAATTTTGAAAAAAAATTC-AAATTTTTTTTGTTGTACTG
95288633 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAA-TTTTTTTTTTAAAACTCGTATTTTTAGAGAGCA
95288698 AAA
65 AAA
95288701 TTTTTTTTTG
Statistics
Matches: 253, Mismatches: 16, Indels: 21
0.87 0.06 0.07
Matches are distributed among these distances:
104 29 0.11
105 19 0.08
106 56 0.22
107 81 0.32
108 14 0.06
109 19 0.08
110 35 0.14
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (108 bp):
GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTAAAACTCGTATTTTTAGAGAGCAA
AAAAAAATTTTGAAAAAAAATTCAAATTTTTTTTGTTGTACTG
Found at i:95288760 original size:85 final size:86
Alignment explanation
Indices: 95288613--95288773 Score: 288
Period size: 85 Copynumber: 1.9 Consensus size: 86
95288603 AAAAAATTCG
* * *
95288613 AATTTTTTTTTGTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTTAAA
1 AATTTTTTTTTGTTATACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAATTTTTTTTTTAAA
95288678 ACTCGTATTTTTAGAGAGCAA
66 ACTCGTATTTTTAGAGAGCAA
95288699 AATTTTTTTTTGTTATACTGGGTGCCGGCCATTG-CAGACCAGCACCCAAAATTTTTTTTTTAAA
1 AATTTTTTTTTGTTATACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAATTTTTTTTTTAAA
95288763 ACTCGTATTTT
66 ACTCGTATTTT
95288774 GTATACCAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 39 0.54
86 33 0.46
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (86 bp):
AATTTTTTTTTGTTATACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAATTTTTTTTTTAAA
ACTCGTATTTTTAGAGAGCAA
Found at i:95296409 original size:26 final size:27
Alignment explanation
Indices: 95296357--95296411 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
95296347 AACAAATTAA
* * *
95296357 AAATAAAATTAAAAAATATGTATACTT
1 AAATAAAACTAAAAAAGATGCATACTT
*
95296384 AAATAAAACTAAAATAGATGCA-ACTT
1 AAATAAAACTAAAAAAGATGCATACTT
95296410 AA
1 AA
95296412 CAAACAAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.27
Consensus pattern (27 bp):
AAATAAAACTAAAAAAGATGCATACTT
Found at i:95297435 original size:6 final size:6
Alignment explanation
Indices: 95297424--95297452 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
95297414 GTTTTATCCT
95297424 ATTGTC ATTGTC ATTGTC ATTGTC ATTGT
1 ATTGTC ATTGTC ATTGTC ATTGTC ATTGT
95297453 TTCTTGGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.52
Consensus pattern (6 bp):
ATTGTC
Found at i:95298720 original size:21 final size:21
Alignment explanation
Indices: 95298676--95298720 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
95298666 GTATTGGTCT
* *
95298676 AAAACATATTTAACTAGTAGA
1 AAAACATATTGAAATAGTAGA
95298697 AAAACCATATTGAAATAGTA-A
1 AAAA-CATATTGAAATAGTAGA
95298718 AAA
1 AAA
95298721 CGAATGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.24
Consensus pattern (21 bp):
AAAACATATTGAAATAGTAGA
Found at i:95300213 original size:19 final size:19
Alignment explanation
Indices: 95300189--95300226 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
95300179 TTAAACTAAA
**
95300189 TTTTTAATTTTTTTTTAAT
1 TTTTTAATAGTTTTTTAAT
95300208 TTTTTAATAGTTTTTTAAT
1 TTTTTAATAGTTTTTTAAT
95300227 CAAACTAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTTTAATAGTTTTTTAAT
Found at i:95300754 original size:32 final size:32
Alignment explanation
Indices: 95300686--95300754 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
95300676 AAAAAAATTA
* * *
95300686 TAGTG-CATTTCCTATTTTGGTTAGTCTAAAT
1 TAGTGTCATTTCCTATTTTGGTCACTCAAAAT
*
95300717 AAGTGTCATTT-CTATTTTGGTCACTCCAAAAT
1 TAGTGTCATTTCCTATTTTGGTCACT-CAAAAT
95300749 TAGTGT
1 TAGTGT
95300755 AAATGGCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
31 16 0.52
32 15 0.48
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (32 bp):
TAGTGTCATTTCCTATTTTGGTCACTCAAAAT
Found at i:95302508 original size:10 final size:9
Alignment explanation
Indices: 95302450--95302500 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
95302440 GCTGATGTAC
95302450 TTTAATTAA
1 TTTAATTAA
95302459 CTTATAATTAA
1 -TT-TAATTAA
95302470 TCTTAATTAA
1 T-TTAATTAA
95302480 TTTAA-TAA
1 TTTAATTAA
95302488 CCTTTAATTAA
1 --TTTAATTAA
95302499 TT
1 TT
95302501 AAGTTTAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
8 3 0.08
9 6 0.17
10 16 0.44
11 11 0.31
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (9 bp):
TTTAATTAA
Found at i:95307769 original size:18 final size:19
Alignment explanation
Indices: 95307735--95307824 Score: 148
Period size: 18 Copynumber: 4.8 Consensus size: 19
95307725 TCATATCTTT
*
95307735 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
95307754 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
95307772 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
*
95307790 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
95307809 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
95307825 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
18 36 0.54
19 31 0.46
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:95308646 original size:207 final size:207
Alignment explanation
Indices: 95308189--95309109 Score: 1556
Period size: 207 Copynumber: 4.5 Consensus size: 207
95308179 AAATCTGTTT
* * * *
95308189 CTTCAATTTGTTCACTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
95308254 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * *
95308319 GGATC-TGCTTCAGTTTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
95308383 GGAGACGCAAAA
196 GGAGACGCCAAA
*
95308395 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
95308460 GTGAAAGCCAAAACAACTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
95308525 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
95308590 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
95308602 CTTCGATTCGTTCTCTGACAGTATAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
95308667 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCAGAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
95308732 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
95308797 GGAGACGCCAAA
196 GGAGACGCCAAA
* * *
95308809 CTTCGATTTATTCTTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
95308874 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
95308939 GGATCTTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
95309004 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * *
95309016 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
95309081 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
95309110 CTGCTCTCCA
Statistics
Matches: 675, Mismatches: 39, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
206 126 0.19
207 549 0.81
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (207 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:95309372 original size:44 final size:41
Alignment explanation
Indices: 95309324--95309468 Score: 126
Period size: 38 Copynumber: 3.5 Consensus size: 41
95309314 CAATTTTGAC
95309324 CTGTTACC-CTACTGCTTAAGGGATTAAGGCGAGTCGTCATCGAT
1 CTGTT-CCACTACTGCTT-AGGGATTAAGGCGAGTC-T-ATCGAT
* * *
95309368 CTGTTCCGCTACTGCTTAGGGAGATAA---GA-TCTA-CGAAC
1 CTGTTCCACTACTGCTTAGGGA-TTAAGGCGAGTCTATCG-AT
95309406 CTGTTACC-CTACTGCTTAAGGGATTAAGGCGAGTCT-TCGAT
1 CTGTT-CCACTACTGCTT-AGGGATTAAGGCGAGTCTATCGAT
*
95309447 CTGCTCCACTACTGCTTAGGGA
1 CTGTTCCACTACTGCTTAGGGA
95309469 GAATAAGATC
Statistics
Matches: 85, Mismatches: 5, Indels: 26
0.73 0.04 0.22
Matches are distributed among these distances:
37 2 0.02
38 19 0.22
39 8 0.09
40 9 0.11
41 18 0.21
42 5 0.06
43 7 0.08
44 17 0.20
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (41 bp):
CTGTTCCACTACTGCTTAGGGATTAAGGCGAGTCTATCGAT
Found at i:95309551 original size:167 final size:166
Alignment explanation
Indices: 95309237--95309685 Score: 704
Period size: 167 Copynumber: 2.7 Consensus size: 166
95309227 GCTATACTTT
* *
95309237 AACCTGTTACCCTACTACTTAAAGGG-TTAAGGCGCA-CCTTCGATCTGCTCCACTACTGCTTAG
1 AACCTGTTACCCTACTGCTT-AAGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTTAG
* * *
95309300 GGAGATAAGATCTGCAATTTTGACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCGTCATC
64 GGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATC
*
95309365 GATCTGTTCCGCTACTGCTTAGGGAGATAAGATCTACG
129 GATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTACG
95309403 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * * * *
95309468 AGAATAAGATCTACAAATTTAACCTGTTACCCTACTGGTTAGGGGATTAAGGCGGGTCTTCGTCG
66 AG-ATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATCG
* **
95309533 ATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGTG
130 ATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTACG
* * *
95309570 AACCTGTTACCCTACTGCTTAGGGGATTAAGGTGAGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
95309635 AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
66 AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGG
95309686 TGCTGAATTT
Statistics
Matches: 261, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
165 6 0.02
166 104 0.40
167 151 0.58
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (166 bp):
AACCTGTTACCCTACTGCTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCATCGA
TCTGCTCCGCTACTGCTTAGGGAGATAAGATCTACG
Found at i:95310636 original size:14 final size:13
Alignment explanation
Indices: 95310617--95310705 Score: 97
Period size: 14 Copynumber: 6.3 Consensus size: 13
95310607 GGCCTCTCCA
95310617 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
95310630 CTTTTTCTCTTTCTTT
1 -TTTTTCT-TTT-TTT
95310646 TTTTCTCTTTTTCTT
1 TTTT-TCTTTTT-TT
*
95310661 TTCTTTCTTTTCTT
1 TT-TTTCTTTTTTT
*
95310675 TTCTTCTTTTTTT
1 TTTTTCTTTTTTT
95310688 TTCTTTCTTTTTTT
1 TT-TTTCTTTTTTT
95310702 TTTT
1 TTTT
95310706 GAAATAGAAG
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
13 13 0.20
14 24 0.37
15 20 0.31
16 8 0.12
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:95310654 original size:22 final size:21
Alignment explanation
Indices: 95310618--95310705 Score: 94
Period size: 22 Copynumber: 4.2 Consensus size: 21
95310608 GCCTCTCCAT
95310618 TTTTC-TTTTTT-TCTTTTTC
1 TTTTCTTTTTTTCTCTTTTTC
95310637 TCTTTCTTTTTTTCTCTTTTTC
1 T-TTTCTTTTTTTCTCTTTTTC
95310659 TTTTCTTTCTTTTCT-TTTCTTC
1 TTTTCTTT-TTTTCTCTTT-TTC
* *
95310681 TTTTTTTTTCTTTCT-TTTTTT
1 TTTTCTTTT-TTTCTCTTTTTC
95310702 TTTT
1 TTTT
95310706 GAAATAGAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
19 1 0.02
20 4 0.07
21 23 0.38
22 33 0.54
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTCTTTTTTTCTCTTTTTC
Found at i:95316467 original size:17 final size:18
Alignment explanation
Indices: 95316416--95316520 Score: 142
Period size: 18 Copynumber: 5.8 Consensus size: 18
95316406 TCATATCTTT
*
95316416 TAAGATTGTATATCATATC
1 TAAGATTG-CTATCATATC
*
95316435 TAAGATTGCAATCATATC
1 TAAGATTGCTATCATATC
95316453 TAAGATTG-TATCATATC
1 TAAGATTGCTATCATATC
*
95316470 TAAGATTGCAATCATATC
1 TAAGATTGCTATCATATC
*
95316488 TAAGATTG-TATTATATC
1 TAAGATTGCTATCATATC
95316505 TAAGATTGCATATCAT
1 TAAGATTGC-TATCAT
95316521 TAAATATTAT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
17 31 0.41
18 32 0.42
19 13 0.17
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (18 bp):
TAAGATTGCTATCATATC
Found at i:95316471 original size:35 final size:35
Alignment explanation
Indices: 95316416--95316520 Score: 174
Period size: 35 Copynumber: 2.9 Consensus size: 35
95316406 TCATATCTTT
95316416 TAAGATTGTATATCATATCTAAGATTGCAATCATATC
1 TAAGATTG--TATCATATCTAAGATTGCAATCATATC
95316453 TAAGATTGTATCATATCTAAGATTGCAATCATATC
1 TAAGATTGTATCATATCTAAGATTGCAATCATATC
*
95316488 TAAGATTGTATTATATCTAAGATTGCATATCAT
1 TAAGATTGTATCATATCTAAGATTGCA-ATCAT
95316521 TAAATATTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.80
36 5 0.08
37 8 0.12
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.39
Consensus pattern (35 bp):
TAAGATTGTATCATATCTAAGATTGCAATCATATC
Found at i:95329788 original size:42 final size:42
Alignment explanation
Indices: 95329706--95329788 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
95329696 AGAACGCTTC
* * *
95329706 AAGAAACACAAAAATAAAGATGAAATATGTTGGAAGAACTTT
1 AAGAAACACAAAAATAAAGATCAAATACGCTGGAAGAACTTT
*
95329748 AAGAAAC-CTAAAAATGAAGATCAAATACGCTGAGAA-AACTT
1 AAGAAACAC-AAAAATAAAGATCAAATACGCTG-GAAGAACTT
95329789 AAAACTCCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
41 1 0.03
42 31 0.89
43 3 0.09
ACGTcount: A:0.54, C:0.11, G:0.16, T:0.19
Consensus pattern (42 bp):
AAGAAACACAAAAATAAAGATCAAATACGCTGGAAGAACTTT
Found at i:95333975 original size:3 final size:3
Alignment explanation
Indices: 95333967--95333999 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
95333957 ATAAAATCCA
*
95333967 TTC TTC TTC TTC TTC TTC TTA TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
95334000 ATATCGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:95337341 original size:38 final size:39
Alignment explanation
Indices: 95337257--95337391 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
95337247 ACCAATATGG
*
95337257 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
95337296 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
95337334 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
95337375 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
95337392 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:95338972 original size:5 final size:5
Alignment explanation
Indices: 95338954--95338984 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
95338944 TTTCTTTTAT
95338954 ATATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA
95338985 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:95340055 original size:38 final size:39
Alignment explanation
Indices: 95340004--95340096 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 39
95339994 CAGATAGATT
* *
95340004 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGGCACTGGGTACCAACTATTACTTCGAACTA-GC
* ** *
95340042 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGGCACTGGGTACCAACTATTACTTCGAACTAGC
95340081 CGATGAGGCACTGGGT
1 CGATGAGGCACTGGGT
95340097 GCCATATTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 19 0.41
39 24 0.52
40 3 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CGATGAGGCACTGGGTACCAACTATTACTTCGAACTAGC
Found at i:95340084 original size:39 final size:39
Alignment explanation
Indices: 95339963--95340097 Score: 107
Period size: 39 Copynumber: 3.4 Consensus size: 39
95339953 GACCTCGAGT
* * *
95339963 CGATGAGACACTGGGTGTC-ACTATATTTCTTCAGATA-GATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GA-ACTATC
** ** * *
95340004 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
95340042 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
*
95340081 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
95340098 CCATATTGGT
Statistics
Matches: 73, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
37 1 0.01
38 20 0.27
39 31 0.42
40 4 0.05
41 15 0.21
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
Found at i:95345434 original size:27 final size:27
Alignment explanation
Indices: 95345396--95345447 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
95345386 GGTTTTGCCC
95345396 AGAGTAATGATCCACTATATTTCTCCT
1 AGAGTAATGATCCACTATATTTCTCCT
*
95345423 AGAGTAATGATCCACTATCTTTCTC
1 AGAGTAATGATCCACTATATTTCTC
95345448 GCAGTACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (27 bp):
AGAGTAATGATCCACTATATTTCTCCT
Found at i:95347803 original size:17 final size:17
Alignment explanation
Indices: 95347766--95347804 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
95347756 AATTATTAAA
*
95347766 TTATTTTTTATAAATGT
1 TTATTTTTTATAAATGC
95347783 TTATTTTTTA-AATATGC
1 TTATTTTTTATAA-ATGC
95347800 TTATT
1 TTATT
95347805 ATATTAATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (17 bp):
TTATTTTTTATAAATGC
Found at i:95351516 original size:23 final size:23
Alignment explanation
Indices: 95351486--95351537 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
95351476 GTTGGACGAT
95351486 TCAAGTATTCGTTCGAGTCCGAG
1 TCAAGTATTCGTTCGAGTCCGAG
95351509 TCAAGTATTCGTTCGAGTCCGAG
1 TCAAGTATTCGTTCGAGTCCGAG
95351532 TCAAGT
1 TCAAGT
95351538 TAATAGGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (23 bp):
TCAAGTATTCGTTCGAGTCCGAG
Found at i:95358278 original size:24 final size:25
Alignment explanation
Indices: 95358251--95358299 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
95358241 TTTATATTAG
*
95358251 TATAAAATTAA-ATTTTTATAATTT
1 TATAAAATTAATATTTTAATAATTT
**
95358275 TATATTATTAATATTTTAATAATTT
1 TATAAAATTAATATTTTAATAATTT
95358300 AATTTTCCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
TATAAAATTAATATTTTAATAATTT
Found at i:95358458 original size:16 final size:16
Alignment explanation
Indices: 95358437--95358489 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
95358427 CATTGGAATA
95358437 GAATAGGGCTGTAATG
1 GAATAGGGCTGTAATG
* *
95358453 GAATAGAGCTATAATG
1 GAATAGGGCTGTAATG
*
95358469 GAATAGGGCTGTAATA
1 GAATAGGGCTGTAATG
95358485 GAATA
1 GAATA
95358490 AAGTTGTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.30, T:0.25
Consensus pattern (16 bp):
GAATAGGGCTGTAATG
Found at i:95361188 original size:75 final size:75
Alignment explanation
Indices: 95361065--95361214 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
95361055 AGAAATTCAT
*
95361065 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATCTACAACA
1 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATATACAACA
95361130 AAATGTAGAA
66 AAATGTAGAA
95361140 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATATACAACA
1 GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATATACAACA
95361205 AAATGTAGAA
66 AAATGTAGAA
95361215 ACTGGAATAC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.49, C:0.18, G:0.12, T:0.21
Consensus pattern (75 bp):
GCATTAGAAATAAAAACAAGCTATAAGCCTAAACATTTACACGCCTGATCAAATGATATACAACA
AAATGTAGAA
Found at i:95366047 original size:38 final size:38
Alignment explanation
Indices: 95365996--95366071 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
95365986 TCTTTATAAA
95365996 ACCCAAGATAACCTCCTCAAATTCCACCTCCTTCAAAC
1 ACCCAAGATAACCTCCTCAAATTCCACCTCCTTCAAAC
95366034 ACCCAAGATAACCTCCTCAAATTCCACCTCCTTCAAAC
1 ACCCAAGATAACCTCCTCAAATTCCACCTCCTTCAAAC
95366072 CCATCTACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.42, G:0.03, T:0.21
Consensus pattern (38 bp):
ACCCAAGATAACCTCCTCAAATTCCACCTCCTTCAAAC
Found at i:95368532 original size:14 final size:16
Alignment explanation
Indices: 95368498--95368538 Score: 68
Period size: 15 Copynumber: 2.7 Consensus size: 16
95368488 AAGATTTTTT
95368498 TAATTAATATTAAAAA
1 TAATTAATATTAAAAA
95368514 TAATTAAT-TTAAAAA
1 TAATTAATATTAAAAA
95368529 -AATTAATATT
1 TAATTAATATT
95368539 TTATAATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.29
15 9 0.38
16 8 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATTAATATTAAAAA
Found at i:95369136 original size:15 final size:14
Alignment explanation
Indices: 95369096--95369135 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
95369086 TAGACTTGAA
95369096 TTTTATATTTTAAT
1 TTTTATATTTTAAT
95369110 TTGATTA-ATTTTAAT
1 TT--TTATATTTTAAT
95369125 TTTTATATTTT
1 TTTTATATTTT
95369136 TTTAAGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 3 0.13
14 7 0.30
15 10 0.43
16 3 0.13
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTTATATTTTAAT
Found at i:95374643 original size:23 final size:23
Alignment explanation
Indices: 95374613--95374676 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
95374603 CCCAATTTTT
95374613 CCCCATGACCCATTTACACTAAA
1 CCCCATGACCCATTTACACTAAA
*
95374636 TCCCATGACCCATTTACACTAAA
1 CCCCATGACCCATTTACACTAAA
**
95374659 CCCCAAAACCCATTTACA
1 CCCCATGACCCATTTACA
95374677 ACATAAGCCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.39, G:0.03, T:0.22
Consensus pattern (23 bp):
CCCCATGACCCATTTACACTAAA
Found at i:95375926 original size:3 final size:3
Alignment explanation
Indices: 95375860--95375914 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
95375850 TGATATTTTC
* * * **
95375860 TAT TAT TAT AAT TAC TAT TATT TAT TGT TAT TGG TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
95375906 TAT TAT TAT
1 TAT TAT TAT
95375915 ATGTTTTATT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:95380990 original size:14 final size:14
Alignment explanation
Indices: 95380971--95380998 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95380961 AAGGCGATAG
95380971 AAGGCACTGAAGTC
1 AAGGCACTGAAGTC
95380985 AAGGCACTGAAGTC
1 AAGGCACTGAAGTC
95380999 TTCCCTGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.29, T:0.14
Consensus pattern (14 bp):
AAGGCACTGAAGTC
Found at i:95390911 original size:18 final size:16
Alignment explanation
Indices: 95390888--95390927 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
95390878 AGAGGTTAGG
95390888 TTTTTTTCTTTTTCTTCA
1 TTTTTTTCTTTTT-TT-A
95390906 TTTTTTTCTTTTTTTA
1 TTTTTTTCTTTTTTTA
95390922 TTTTTT
1 TTTTTT
95390928 ATTTTGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 2 0.09
18 13 0.59
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTTTCTTTTTTTA
Found at i:95391371 original size:73 final size:73
Alignment explanation
Indices: 95391094--95391556 Score: 517
Period size: 73 Copynumber: 6.3 Consensus size: 73
95391084 TACTCTGATG
* * * *
95391094 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGATGAGTTGAGCAT-TGGCTCACA
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
*
95391158 CGTTGAGGTAT
63 CGCTGAGGTAT
* * *
95391169 TTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTC
1 TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
95391234 ACG-TCGAGGTAT
62 ACGCT-GAGGTAT
** * * *
95391246 TTTCAAAATCTGTTTTT----AATCAACTTACAT-TTGCGAGAGGTGAGTTGGGCCTCAAGACAG
1 TTTCAATTTCTGTTTTTCAAAAATCAAC-T-CATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
95391306 GCTGAGGTAA
64 GCTGAGGTAT
*
95391316 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
95391381 TGAGGTAT
66 TGAGGTAT
* * * * * *
95391389 TTTCAATTTCTGCTTTTCAAAAAAATTAACTTACATTGCGAGAGGTGAGTTGGGCCTTAGGACAC
1 TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
95391454 GCTGAGGTAA
64 GCTGAGGTAT
* * * *
95391464 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGGCACAC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
95391529 TGAGGTAT
66 TGAGGTAT
* *
95391537 TTTTAATTTCTGCTTTTCAA
1 TTTCAATTTCTGTTTTTCAA
95391557 TTTATGTGTT
Statistics
Matches: 330, Mismatches: 44, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
70 24 0.07
71 8 0.02
72 27 0.08
73 119 0.36
74 7 0.02
75 81 0.25
76 1 0.00
77 61 0.18
78 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAT
Found at i:95391469 original size:148 final size:146
Alignment explanation
Indices: 95391094--95391556 Score: 580
Period size: 148 Copynumber: 3.1 Consensus size: 146
95391084 TACTCTGATG
* * * * * * *
95391094 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGATGAGTTGAGCATT-GGCTCACA
1 TTTCAATTTCTGCTTTTCAAAAATCAACTTACATTGCGAGAGGTGAGTTGGGCCTTAGG---ACA
* * *
95391158 CGTTGAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
63 CGCTGAGGTAATTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
95391223 CCTC-GGGTCTCACG-TCGAGGTAT
126 CCTCAGGG---CACGCT-GAGGTAT
** * * * *
95391246 TTTCAAAATCTG-TTTT---TAATCAACTTACATTTGCGAGAGGTGAGTTGGGCCTCAAGACAGG
1 TTTCAATTTCTGCTTTTCAAAAATCAACTTACA-TTGCGAGAGGTGAGTTGGGCCTTAGGACACG
95391307 CTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 CTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
95391372 AGGGCACGCTGAGGTAT
130 AGGGCACGCTGAGGTAT
*
95391389 TTTCAATTTCTGCTTTTCAAAAAAATTAACTTACATTGCGAGAGGTGAGTTGGGCCTTAGGACAC
1 TTTCAATTTCTGCTTTTC--AAAAATCAACTTACATTGCGAGAGGTGAGTTGGGCCTTAGGACAC
* *
95391454 GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCAT
64 GCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
95391519 CAGGGCACACTGAGGTAT
129 CAGGGCACGCTGAGGTAT
*
95391537 TTTTAATTTCTGCTTTTCAA
1 TTTCAATTTCTGCTTTTCAA
95391557 TTTATGTGTT
Statistics
Matches: 275, Mismatches: 26, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
143 21 0.08
144 5 0.02
145 38 0.14
146 5 0.02
147 28 0.10
148 133 0.48
149 30 0.11
150 1 0.00
151 4 0.01
152 10 0.04
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (146 bp):
TTTCAATTTCTGCTTTTCAAAAATCAACTTACATTGCGAGAGGTGAGTTGGGCCTTAGGACACGC
TGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGGCACGCTGAGGTAT
Found at i:95392754 original size:23 final size:22
Alignment explanation
Indices: 95392706--95392746 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
95392696 TTTCGAAATT
95392706 TTTTTATTTCTTTCTTTTTCCG
1 TTTTTATTTCTTTCTTTTTCCG
*
95392728 TTTTTATTTCATT-TTTTTC
1 TTTTTATTTCTTTCTTTTTC
95392747 TCTCTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.07, C:0.15, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTTATTTCTTTCTTTTTCCG
Found at i:95393408 original size:15 final size:15
Alignment explanation
Indices: 95393388--95393427 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
95393378 ATTAATTTTG
95393388 ATATTTTCTATTATT
1 ATATTTTCTATTATT
95393403 ATATTTTCTATTATT
1 ATATTTTCTATTATT
95393418 -TATTTT-TATT
1 ATATTTTCTATT
95393428 GGTATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 4 0.16
14 6 0.24
15 15 0.60
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (15 bp):
ATATTTTCTATTATT
Found at i:95396391 original size:29 final size:29
Alignment explanation
Indices: 95396359--95396414 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
95396349 AATCCAAAAA
*
95396359 ATAAATTAAATATTAAAATAGATCATTCT
1 ATAAATTAAATATCAAAATAGATCATTCT
* *
95396388 ATAAATTAATTATCGAAATAGATCATT
1 ATAAATTAAATATCAAAATAGATCATT
95396415 TGTTACCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (29 bp):
ATAAATTAAATATCAAAATAGATCATTCT
Found at i:95397186 original size:21 final size:20
Alignment explanation
Indices: 95397162--95397201 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
95397152 TATACACTTT
95397162 GAAAAGTACA-TTATTGAGAGA
1 GAAAAGT-CATTTA-TGAGAGA
95397183 GAAAAGTCATTTATGAGAG
1 GAAAAGTCATTTATGAGAG
95397202 GCTCATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (20 bp):
GAAAAGTCATTTATGAGAGA
Found at i:95397199 original size:20 final size:21
Alignment explanation
Indices: 95397162--95397201 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
95397152 TATACACTTT
95397162 GAAAAGTACATTATTGAGAGA
1 GAAAAGTACATTATTGAGAGA
95397183 GAAAAGT-CATT-TATGAGAG
1 GAAAAGTACATTAT-TGAGAG
95397202 GCTCATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 10 0.56
21 7 0.39
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (21 bp):
GAAAAGTACATTATTGAGAGA
Found at i:95398690 original size:22 final size:21
Alignment explanation
Indices: 95398638--95398691 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
95398628 ATATATACAT
*
95398638 TAAAAATATAAAAAAATAAAA
1 TAAATATATAAAAAAATAAAA
* * *
95398659 TAAATGTATAGAAAAATCAGAA
1 TAAATATATAAAAAAAT-AAAA
*
95398681 TATATATATAA
1 TAAATATATAA
95398692 TCTAAAAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.26
Consensus pattern (21 bp):
TAAATATATAAAAAAATAAAA
Found at i:95399076 original size:27 final size:26
Alignment explanation
Indices: 95399045--95399098 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
95399035 TAATTGATAC
**
95399045 TTTAGATATTAAAATGGGATAAAAAAA
1 TTTAGATACAAAAATGGGA-AAAAAAA
* *
95399072 TTTAGGTACAAAAATGGGAAAATAAA
1 TTTAGATACAAAAATGGGAAAAAAAA
95399098 T
1 T
95399099 ATACATAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.54, C:0.02, G:0.17, T:0.28
Consensus pattern (26 bp):
TTTAGATACAAAAATGGGAAAAAAAA
Found at i:95405489 original size:7 final size:7
Alignment explanation
Indices: 95405477--95405504 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
95405467 GAAATTGGGA
95405477 CTTTTGC
1 CTTTTGC
95405484 CTTTTGC
1 CTTTTGC
95405491 CTTTTGC
1 CTTTTGC
95405498 CTTTTGC
1 CTTTTGC
95405505 ATAGTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.29, G:0.14, T:0.57
Consensus pattern (7 bp):
CTTTTGC
Found at i:95408275 original size:3 final size:3
Alignment explanation
Indices: 95408267--95408300 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
95408257 AAAATTTCCT
95408267 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
95408301 GCATTTAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:95409751 original size:43 final size:43
Alignment explanation
Indices: 95409687--95409772 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
95409677 GTGACCAAAA
* *
95409687 AATACAATATTGAATAGTTGGGTTACCATTTGTAACTTTTCAT
1 AATACAATATTAAATAATTGGGTTACCATTTGTAACTTTTCAT
*
95409730 AATACAATATTAAATAATTGGGTTGCCATTTGTAACTTTTCAT
1 AATACAATATTAAATAATTGGGTTACCATTTGTAACTTTTCAT
95409773 TGTTGGGTGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.42
Consensus pattern (43 bp):
AATACAATATTAAATAATTGGGTTACCATTTGTAACTTTTCAT
Found at i:95410198 original size:28 final size:29
Alignment explanation
Indices: 95410147--95410208 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
95410137 AATCTATATC
*
95410147 TTTATAATTTTTAAAGGATTAAGT-CGAAT
1 TTTATAATTTTTAAAGGATAAAGTGC-AAT
95410176 TTTATAA-TTTTAGAAGGA-AAAGTGCAAT
1 TTTATAATTTTTA-AAGGATAAAGTGCAAT
95410204 TTTAT
1 TTTAT
95410209 CTTAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.44
Consensus pattern (29 bp):
TTTATAATTTTTAAAGGATAAAGTGCAAT
Found at i:95412361 original size:22 final size:22
Alignment explanation
Indices: 95412336--95412381 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
95412326 TCTTTAATGA
*
95412336 TTAATCCGATCATCGTGAGTGT
1 TTAATCCGATCATCATGAGTGT
95412358 TTAATCCGATCATCATGAGTGT
1 TTAATCCGATCATCATGAGTGT
95412380 TT
1 TT
95412382 TCTAGAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (22 bp):
TTAATCCGATCATCATGAGTGT
Found at i:95425663 original size:8 final size:8
Alignment explanation
Indices: 95425634--95425680 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
95425624 ATGTGAACAA
95425634 TAAAATAT
1 TAAAATAT
95425642 ATAAAATAT
1 -TAAAATAT
95425651 T-AAATAT
1 TAAAATAT
95425658 TAAAATAT
1 TAAAATAT
**
95425666 CCAAATAT
1 TAAAATAT
*
95425674 TAGAATA
1 TAAAATA
95425681 ATAATAATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
7 7 0.22
8 17 0.53
9 8 0.25
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (8 bp):
TAAAATAT
Found at i:95425933 original size:15 final size:14
Alignment explanation
Indices: 95425912--95425978 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
95425902 ATAACATGTA
95425912 AAAAATATATATAT
1 AAAAATATATATAT
95425926 AAATAATATA-ATATT
1 AAA-AATATATATA-T
* *
95425941 AAAGATATATACAT
1 AAAAATATATATAT
*
95425955 -AAAATA-GTATA-
1 AAAAATATATATAT
*
95425966 AAATATATATATA
1 AAAAATATATATA
95425979 CGTAATATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
12 8 0.20
13 9 0.22
14 12 0.29
15 12 0.29
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAAATATATATAT
Found at i:95425951 original size:31 final size:31
Alignment explanation
Indices: 95425889--95425966 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
95425879 TATAGTTAAG
* *
95425889 ATATATACATAAGATAACATGTAAAAAATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
95425920 ATATATAAATAATATAATAT-T-AAAGATAT
1 ATATATAAATAATATAACATGTAAAAAATAT
* *
95425949 ATACATAAAATAGTATAA
1 ATATAT-AAATAATATAA
95425967 AATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.30
30 11 0.28
31 17 0.43
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (31 bp):
ATATATAAATAATATAACATGTAAAAAATAT
Found at i:95425956 original size:25 final size:25
Alignment explanation
Indices: 95425830--95426053 Score: 101
Period size: 25 Copynumber: 9.0 Consensus size: 25
95425820 TAAATACGTG
* *
95425830 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
95425855 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
95425880 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
95425902 ATAACATGTAAAAAATATATATATAAATAAT
1 ATAATAT-T----AA-AGATATATACATAAT
*
95425933 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
95425958 ATAGTATAAAATATATATATACGTAAT
1 ATAATAT-TAA-AGATATATACATAAT
* *
95425985 AT-ATAATTTAA-A-ATATACCTAAT
1 ATAAT-ATTAAAGATATATACATAAT
* *
95426008 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
95426030 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
95426053 A
1 A
95426054 ACAAAAAAGG
Statistics
Matches: 153, Mismatches: 30, Indels: 34
0.71 0.14 0.16
Matches are distributed among these distances:
21 3 0.02
22 27 0.18
23 30 0.20
24 8 0.05
25 43 0.28
26 6 0.04
27 16 0.10
30 2 0.01
31 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:95425960 original size:27 final size:27
Alignment explanation
Indices: 95425830--95426001 Score: 82
Period size: 27 Copynumber: 6.6 Consensus size: 27
95425820 TAAATACGTG
*
95425830 ATAATATTAAAAATATGTACAT--AAT
1 ATAATATTAAAAATATATACATAAAAT
* * *
95425855 ATAGTGTTAAAAATACATACAT--AAT
1 ATAATATTAAAAATATATACATAAAAT
* * *
95425880 AT-A-GTT-AAGATATATACATAAGAT
1 ATAATATTAAAAATATATACATAAAAT
* * *
95425904 A-ACATGTAAAAAATATATATATAAATAAT
1 ATA-ATATTAAAAATATATACAT-AA-AAT
*
95425933 ATAATATTAAAGATATATACATAAAAT
1 ATAATATTAAAAATATATACATAAAAT
* *
95425960 AGT-ATA--AAATATATATATACGTAATAT
1 A-TAATATTAAA-A-ATATATACATAAAAT
95425987 ATAAT-TT-AAAATATA
1 ATAATATTAAAAATATA
95426002 CCTAATATAT
Statistics
Matches: 113, Mismatches: 19, Indels: 30
0.70 0.12 0.19
Matches are distributed among these distances:
22 11 0.10
23 3 0.03
24 3 0.03
25 32 0.28
26 4 0.04
27 36 0.32
28 5 0.04
29 18 0.16
30 1 0.01
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (27 bp):
ATAATATTAAAAATATATACATAAAAT
Found at i:95426576 original size:30 final size:30
Alignment explanation
Indices: 95426540--95426772 Score: 380
Period size: 30 Copynumber: 7.8 Consensus size: 30
95426530 TAGGTACAAG
* *
95426540 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
95426570 TGGTGGTGGAAAAAGAGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95426600 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95426630 TGGTGGTGGAAAA-GAGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95426659 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
95426689 TGGTGGTGGAAAA-GAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
95426718 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
95426748 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
95426773 TGAGAAAAGT
Statistics
Matches: 187, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
29 55 0.29
30 132 0.71
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:95426670 original size:59 final size:59
Alignment explanation
Indices: 95426540--95426770 Score: 426
Period size: 59 Copynumber: 3.9 Consensus size: 59
95426530 TAGGTACAAG
*
95426540 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGG-AAAAGAGTGGCTAATGGAGT
95426600 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAATGGAGT
*
95426659 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAATGGAGT
95426718 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTA
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAA-GAGTGGCTA
95426771 GTTGAGAAAA
Statistics
Matches: 168, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
59 121 0.72
60 47 0.28
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.25
Consensus pattern (59 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAATGGAGT
Found at i:95426738 original size:89 final size:90
Alignment explanation
Indices: 95426540--95426772 Score: 389
Period size: 89 Copynumber: 2.6 Consensus size: 90
95426530 TAGGTACAAG
* * *
95426540 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAATGGAGTTGGTG
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTG
*
95426605 GTGGAAAAGGTGTGGCTAGTGGAGT
66 GTGGAAAAGGAGTGGCTAGTGGAGT
* * *
95426630 TGGTGGTGGAAAA-GAGTGGCTAATGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTG
95426694 GTGGAAAA-GAGTGGCTAGTGGAGT
66 GTGGAAAAGGAGTGGCTAGTGGAGT
95426718 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
95426773 TGAGAAAAGT
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
88 28 0.21
89 92 0.70
90 12 0.09
ACGTcount: A:0.23, C:0.03, G:0.48, T:0.25
Consensus pattern (90 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTG
GTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:95437934 original size:16 final size:15
Alignment explanation
Indices: 95437913--95437960 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
95437903 GATGTGAATA
95437913 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
95437929 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
95437944 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
95437960 A
1 A
95437961 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:95437936 original size:24 final size:24
Alignment explanation
Indices: 95437909--95437964 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
95437899 TAATGATGTG
*
95437909 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
95437933 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
95437957 AATAATAA
1 AATAATAA
95437965 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:95437943 original size:8 final size:8
Alignment explanation
Indices: 95437909--95437960 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
95437899 TAATGATGTG
*
95437909 AATAATAA
1 AATATTAA
95437917 AATATATAA
1 AATAT-TAA
95437926 AATA-TAA
1 AATATTAA
95437933 AATATTAA
1 AATATTAA
*
95437941 AATATCAA
1 AATATTAA
*
95437949 AATATTAG
1 AATATTAA
95437957 AATA
1 AATA
95437961 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Done.