Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 302 of 318
Found at i:95923344 original size:24 final size:24
Alignment explanation
Indices: 95923306--95923354 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
95923296 TATATAAATG
* * * *
95923306 AAAAATAATACATAATTTTTGATA
1 AAAAATAAAAAATAATATATGATA
95923330 AAAAATAAAAAATAATATATGATA
1 AAAAATAAAAAATAATATATGATA
95923354 A
1 A
95923355 TAATATACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (24 bp):
AAAAATAAAAAATAATATATGATA
Found at i:95931753 original size:43 final size:44
Alignment explanation
Indices: 95931699--95931884 Score: 272
Period size: 43 Copynumber: 4.3 Consensus size: 44
95931689 TGAAAAAAAA
* * *
95931699 GCCGCTAAAAGTCATGGC-TTTTAGCGGCGTTTTTGGGAAAAGT
1 GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGC
*
95931742 GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGTTTGAGGG-AAAGC
1 GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGC
* * *
95931785 GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGCTTGAGAG-AAAGC
1 GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGC
*
95931828 GCCGCTAAAAGTCATGGC-TTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGC
95931871 GCCGCTAAAAGTCA
1 GCCGCTAAAAGTCA
95931885 CGGCACCGCT
Statistics
Matches: 131, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
42 16 0.12
43 98 0.75
44 17 0.13
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
GCCGCTAAAAGTCAAGGCTTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:95931895 original size:18 final size:18
Alignment explanation
Indices: 95931872--95931906 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
95931862 GGGAAAAGCG
95931872 CCGCTAAAAGTCACGGCA
1 CCGCTAAAAGTCACGGCA
*
95931890 CCGCTAAAAGTCGCGGC
1 CCGCTAAAAGTCACGGC
95931907 TTTTAGCGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.26, T:0.11
Consensus pattern (18 bp):
CCGCTAAAAGTCACGGCA
Found at i:95932043 original size:31 final size:33
Alignment explanation
Indices: 95931993--95932075 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 33
95931983 TTCCTGCATT
* * *
95931993 AAAATCCAACTAAATACAACAAATATA-AT-AA
1 AAAATACAACCAAAAACAACAAATATAGATAAA
* * *
95932024 AAAATGCAGCCAAAAACAACAAATTTAGTATAAA
1 AAAATACAACCAAAAACAACAAATATAG-ATAAA
95932058 AAAATACAACCAAAAACA
1 AAAATACAACCAAAAACA
95932076 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 22 0.52
33 2 0.05
34 18 0.43
ACGTcount: A:0.64, C:0.17, G:0.04, T:0.16
Consensus pattern (33 bp):
AAAATACAACCAAAAACAACAAATATAGATAAA
Found at i:95938021 original size:57 final size:57
Alignment explanation
Indices: 95937948--95938059 Score: 170
Period size: 57 Copynumber: 2.0 Consensus size: 57
95937938 TATTAGTTAG
** * *
95937948 GTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTGA
* *
95938005 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATTAGTTATGTAAGTTATGT
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGT
95938060 AATTTATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.29, C:0.01, G:0.22, T:0.47
Consensus pattern (57 bp):
GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTGA
Found at i:95938061 original size:9 final size:9
Alignment explanation
Indices: 95937960--95938072 Score: 118
Period size: 9 Copynumber: 12.2 Consensus size: 9
95937950 TATGTAAGTT
*
95937960 GTTATGTAC
1 GTTATGTAA
*
95937969 GTTATGTGA
1 GTTATGTAA
95937978 GTTATGTAA
1 GTTATGTAA
*
95937987 ATTATGTAA
1 GTTATGTAA
*
95937996 GTTATGTGA
1 GTTATGTAA
95938005 GTTATGTAA
1 GTTATGTAA
95938014 GTTGTTATGTAA
1 ---GTTATGTAA
*
95938026 ATTATGTAA
1 GTTATGTAA
* *
95938035 GTTATATTA
1 GTTATGTAA
95938044 GTTATGTAA
1 GTTATGTAA
95938053 GTTATGTAA
1 GTTATGTAA
* *
95938062 TTTATTTAA
1 GTTATGTAA
95938071 GT
1 GT
95938073 AATGATCAAT
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
9 76 0.89
12 9 0.11
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (9 bp):
GTTATGTAA
Found at i:95938072 original size:57 final size:57
Alignment explanation
Indices: 95937948--95938072 Score: 169
Period size: 57 Copynumber: 2.2 Consensus size: 57
95937938 TATTAGTTAG
** * * *
95937948 GTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAA
* *
95938005 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATTAGTTATGTAAGTTATGTAA
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAA
* *
95938062 TTTATTTAAGT
1 GTTATGTAAGT
95938073 AATGATCAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.48
Consensus pattern (57 bp):
GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAA
Found at i:95938539 original size:241 final size:241
Alignment explanation
Indices: 95938116--95938787 Score: 1263
Period size: 241 Copynumber: 2.8 Consensus size: 241
95938106 TAGTTATAAC
**
95938116 TTTTAAGATTCATCATACGTGGTTTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
*
95938181 TATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
*
95938246 TGGAGAGAAGATCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATATTC
95938311 AATAGTAAATGAGTTGGATAGAACTTTTTTCAAGTATTTTTGAATT
196 AATAGTAAATGAGTTGGATAGAACTTTTTTCAAGTATTTTTGAATT
95938357 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
* * *
95938422 TATAAGGCAACCCGCCGGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATGTAAAATAAGCT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
*
95938487 TGGAGAGAAGGTCAGCTATTGTTGTAAGTTTAATGGACAAGCAAGCTACATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATATTC
95938552 AATAGTAAATGAGTTGGATAGAACTTTTTTCAAGTATTTTTGAATT
196 AATAGTAAATGAGTTGGATAGAACTTTTTTCAAGTATTTTTGAATT
*
95938598 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
95938663 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
95938728 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
95938788 ATTAATTCAT
Statistics
Matches: 418, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
241 418 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (241 bp):
TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATATTC
AATAGTAAATGAGTTGGATAGAACTTTTTTCAAGTATTTTTGAATT
Found at i:95938946 original size:23 final size:23
Alignment explanation
Indices: 95938920--95938969 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
95938910 GTTCAAGTTT
95938920 ATTTAAAGGGCT-CAAATTCATAC
1 ATTTAAAGGGCTGC-AATTCATAC
95938943 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
95938966 ATTT
1 ATTT
95938970 GATTAATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 25 0.96
24 1 0.04
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:95940643 original size:19 final size:18
Alignment explanation
Indices: 95940619--95940660 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
95940609 CCCAAAAACA
95940619 AAAATACTTT-AACTGAATC
1 AAAATA-TTTAAACTGAA-C
95940638 AAAATATTTACAACTGAAC
1 AAAATATTTA-AACTGAAC
95940657 AAAA
1 AAAA
95940661 AAAATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 3 0.14
19 11 0.52
20 7 0.33
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAATATTTAAACTGAAC
Found at i:95940661 original size:20 final size:19
Alignment explanation
Indices: 95940615--95940675 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 19
95940605 TTCACCCAAA
95940615 AACAAAAATACTTT-AACTG
1 AACAAAAATA-TTTAAACTG
95940634 AATC-AAAATATTTACAACTG
1 AA-CAAAAATATTTA-AACTG
* *
95940654 AACAAAAAAAATTAAAACTG
1 AAC-AAAAATATTTAAACTG
95940674 AA
1 AA
95940676 ATATGAAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
18 3 0.09
19 9 0.26
20 15 0.43
21 8 0.23
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (19 bp):
AACAAAAATATTTAAACTG
Found at i:95941034 original size:19 final size:19
Alignment explanation
Indices: 95941010--95941063 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
95941000 CGTCCACTCA
*
95941010 GAGTCTTCAATGGCAGTCG
1 GAGTCTTCAACGGCAGTCG
95941029 GAGTCTTCAACGGCAGTCG
1 GAGTCTTCAACGGCAGTCG
95941048 GAGTCTTCAACGGCAG
1 GAGTCTTCAACGGCAG
95941064 AAGGATATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.22
Consensus pattern (19 bp):
GAGTCTTCAACGGCAGTCG
Found at i:95941128 original size:19 final size:20
Alignment explanation
Indices: 95941081--95941132 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
95941071 TTTCGATTTT
* * *
95941081 GATTCGGGGAAATATTTAGG
1 GATTAGGGGAAATAGTTAAG
95941101 GATTAGGGGAAA-AGTTAAG
1 GATTAGGGGAAATAGTTAAG
*
95941120 GATTTGGGGAAAT
1 GATTAGGGGAAAT
95941133 TTGGGTGGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.35, C:0.02, G:0.37, T:0.27
Consensus pattern (20 bp):
GATTAGGGGAAATAGTTAAG
Found at i:95942258 original size:15 final size:14
Alignment explanation
Indices: 95942217--95942260 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
95942207 GAAATTTATT
*
95942217 TTTAGGGTTTACAAA
1 TTTAGGGTTTA-TAA
95942232 TTTAGGGTTTATAA
1 TTTAGGGTTTATAA
95942246 TTTAGGGTATTATAA
1 TTTAGGGT-TTATAA
95942261 GGGTTTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (14 bp):
TTTAGGGTTTATAA
Found at i:95942466 original size:29 final size:29
Alignment explanation
Indices: 95942428--95942483 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
95942418 AGAGTTTAGA
*
95942428 TCATGGGTTATGATTTAGGGATTAGGCGG
1 TCATCGGTTATGATTTAGGGATTAGGCGG
*
95942457 TCATCGGTTATGATTTAGGGGTTAGGC
1 TCATCGGTTATGATTTAGGGATTAGGC
95942484 TTCATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.20, C:0.09, G:0.36, T:0.36
Consensus pattern (29 bp):
TCATCGGTTATGATTTAGGGATTAGGCGG
Found at i:95943090 original size:41 final size:40
Alignment explanation
Indices: 95943023--95943220 Score: 152
Period size: 41 Copynumber: 4.9 Consensus size: 40
95943013 CGCTTTTACA
* * * * * *
95943023 AAAACGCCACTATAGCTCAACCTTTTGTGGCGTTTGGACCT
1 AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGA-AT
* *
95943064 AAAGCGCCACTATATCTCAGCTTTTTGCGGCATTTTGAAT
1 AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGAAT
* * * * * *
95943104 AAAACGCCACTATTTCTCAGTTTTTTGCAGCGTTTTGTAT
1 AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGAAT
* * *
95943144 AAAAACGCCACTAT-TACTCAG-TTTTTAGCAGCGTTTTGAAT
1 -AAAACGCCACTATAT-CTCAGCTTTTT-GCGGCATTTGGAAT
95943185 GAAAACGCCACTAT-TGCTCAG-TTTTTAGCGGCATTT
1 -AAAACGCCACTATAT-CTCAGCTTTTT-GCGGCATTT
95943221 TGTTTCAAAC
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 41 0.30
41 94 0.70
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (40 bp):
AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGAAT
Found at i:95943222 original size:41 final size:39
Alignment explanation
Indices: 95943063--95943222 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 39
95943053 CGTTTGGACC
* *
95943063 TAAAGCGCCACTATATCTCAGCTTTTT-GCGGCATTTTGAA
1 TAAAACGCCACTAT-TCTCAG-TTTTTAGCAGCATTTTGAA
* * *
95943103 TAAAACGCCACTATTTCTCAGTTTTTTGCAGCGTTTTGTA
1 TAAAACGCCACTA-TTCTCAGTTTTTAGCAGCATTTTGAA
*
95943143 TAAAAACGCCACTATTACTCAGTTTTTAGCAGCGTTTTGAA
1 T-AAAACGCCACTATT-CTCAGTTTTTAGCAGCATTTTGAA
*
95943184 TGAAAACGCCACTATTGCTCAGTTTTTAGCGGCATTTTG
1 T-AAAACGCCACTATT-CTCAGTTTTTAGCAGCATTTTG
95943223 TTTCAAACAC
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
39 5 0.05
40 31 0.29
41 70 0.66
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (39 bp):
TAAAACGCCACTATTCTCAGTTTTTAGCAGCATTTTGAA
Found at i:95943222 original size:82 final size:81
Alignment explanation
Indices: 95943068--95943223 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
95943058 GGACCTAAAG
* * *
95943068 CGCCACTATATCTCAGCTTTTTGCGGCATTTTGAATAAAACGCCACTATTTCTCAGTTTTTTGCA
1 CGCCACTATATCTCAGCTTTTTGCAGCATTTTGAATAAAACGCCACTATTGCTCAGTTTTTAGCA
*
95943133 GCGTTTTGTATAAAAA
66 GCATTTTGTATAAAAA
*
95943149 CGCCACTAT-TACTCAG-TTTTTAGCAGCGTTTTGAATGAAAACGCCACTATTGCTCAGTTTTTA
1 CGCCACTATAT-CTCAGCTTTTT-GCAGCATTTTGAAT-AAAACGCCACTATTGCTCAGTTTTTA
*
95943212 GCGGCATTTTGT
63 GCAGCATTTTGT
95943224 TTCAAACACC
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
80 6 0.09
81 26 0.39
82 34 0.52
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (81 bp):
CGCCACTATATCTCAGCTTTTTGCAGCATTTTGAATAAAACGCCACTATTGCTCAGTTTTTAGCA
GCATTTTGTATAAAAA
Found at i:95946093 original size:30 final size:30
Alignment explanation
Indices: 95946057--95946185 Score: 213
Period size: 30 Copynumber: 4.3 Consensus size: 30
95946047 CTAGCCTTTG
*
95946057 CCACCACCAACTCCACTAGCCACACCTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
95946087 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
95946117 CCACCATCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
95946147 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
95946177 CCACCACCA
1 CCACCACCA
95946186 CTTGTACCTA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 93 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:95946676 original size:22 final size:24
Alignment explanation
Indices: 95946627--95946672 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
95946617 TTTTTTTTGT
95946627 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
95946650 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
95946673 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:95946786 original size:28 final size:28
Alignment explanation
Indices: 95946713--95946827 Score: 100
Period size: 29 Copynumber: 4.3 Consensus size: 28
95946703 ATATATATAT
*
95946713 TATACTATTTATGTATATATCTTTAATAC
1 TATATTATTTATGTATATAT-TTTAATAC
* **
95946742 TATATTATTTATATATATATTTTTCTAC
1 TATATTATTTATGTATATATTTTAATAC
*
95946770 -ATGTTATCTTATGTATATA-TTTAAT--
1 TATATTAT-TTATGTATATATTTTAATAC
* *
95946795 TATATTATGTATGTAT-T-TTTT-ACAC
1 TATATTATTTATGTATATATTTTAATAC
95946820 TATATTAT
1 TATATTAT
95946828 GTACATATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
23 1 0.01
24 4 0.06
25 15 0.21
26 6 0.09
27 10 0.14
28 16 0.23
29 18 0.26
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (28 bp):
TATATTATTTATGTATATATTTTAATAC
Found at i:95946797 original size:21 final size:21
Alignment explanation
Indices: 95946773--95946812 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
95946763 TTTCTACATG
*
95946773 TTATCTTATGTATATATTTAA
1 TTATATTATGTATATATTTAA
*
95946794 TTATATTATGTATGTATTT
1 TTATATTATGTATATATTT
95946813 TTTACACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (21 bp):
TTATATTATGTATATATTTAA
Found at i:95946877 original size:78 final size:75
Alignment explanation
Indices: 95946706--95946877 Score: 166
Period size: 78 Copynumber: 2.2 Consensus size: 75
95946696 ATTACGTATA
* * * *
95946706 TATATATTATACTATTTATGTATATATCTTTAATACTATATTATTTATATATATATTTTTCTACA
1 TATATATTATA-TA-TTATGTATATATCTTTAACACTATATTATGTACATATATATTTTTATACA
*
95946771 TGTTATCTTATG
64 TGTTATCATATG
* * * * *
95946783 TATATATTTAATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTTTATAT
1 TATATA-TT-A-TATATTATGTATATATCTTTAACACTATATTATGTACATATATATTTTTATA-
95946848 CTAT-TTCATACATATG
62 C-ATGTT-AT-CATATG
95946864 TATATATTATATAT
1 TATATATTATATAT
95946878 ATCATAACAT
Statistics
Matches: 78, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
77 6 0.08
78 46 0.59
79 7 0.09
80 8 0.10
81 11 0.14
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (75 bp):
TATATATTATATATTATGTATATATCTTTAACACTATATTATGTACATATATATTTTTATACATG
TTATCATATG
Found at i:95946951 original size:23 final size:23
Alignment explanation
Indices: 95946903--95946955 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
95946893 GTTATATTTT
*
95946903 CACTATTTATGTATATACTTCAAA
1 CACTATATATGTATATA-TTCAAA
*
95946927 CACTATATATAGTATAT-TTCTAA
1 CACTATATAT-GTATATATTCAAA
95946950 CACTAT
1 CACTAT
95946956 TACTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (23 bp):
CACTATATATGTATATATTCAAA
Found at i:95958800 original size:15 final size:14
Alignment explanation
Indices: 95958759--95958802 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
95958749 GAAATTTATT
*
95958759 TTTAGGGTTTACAAA
1 TTTAGGGTTTA-TAA
95958774 TTTAGGGTTTATAA
1 TTTAGGGTTTATAA
95958788 TTTAGGGTATTATAA
1 TTTAGGGT-TTATAA
95958803 GGGTTTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (14 bp):
TTTAGGGTTTATAA
Found at i:95959008 original size:29 final size:29
Alignment explanation
Indices: 95958970--95959025 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
95958960 AGAGTTTAGA
*
95958970 TCATGGGTTATGATTTAGGGATTAGGCGG
1 TCATCGGTTATGATTTAGGGATTAGGCGG
*
95958999 TCATCGGTTATGATTTAGGGGTTAGGC
1 TCATCGGTTATGATTTAGGGATTAGGC
95959026 TTCATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.20, C:0.09, G:0.36, T:0.36
Consensus pattern (29 bp):
TCATCGGTTATGATTTAGGGATTAGGCGG
Found at i:95959633 original size:41 final size:40
Alignment explanation
Indices: 95959566--95959763 Score: 152
Period size: 41 Copynumber: 4.9 Consensus size: 40
95959556 CGCTTTTACA
* * * * * *
95959566 AAAACGCCACTATAGCTCAACCTTTTGTGGCGTTTGGACCT
1 AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGA-AT
* *
95959607 AAAGCGCCACTATATCTCAGCTTTTTGCGGCATTTTGAAT
1 AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGAAT
* * * * * *
95959647 AAAACGCCACTATTTCTCAGTTTTTTGCAGCGTTTTGTAT
1 AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGAAT
* * *
95959687 AAAAACGCCACTAT-TACTCAG-TTTTTAGCAGCGTTTTGAAT
1 -AAAACGCCACTATAT-CTCAGCTTTTT-GCGGCATTTGGAAT
95959728 GAAAACGCCACTAT-TGCTCAG-TTTTTAGCGGCATTT
1 -AAAACGCCACTATAT-CTCAGCTTTTT-GCGGCATTT
95959764 TGTTTCAAAC
Statistics
Matches: 135, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 41 0.30
41 94 0.70
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (40 bp):
AAAACGCCACTATATCTCAGCTTTTTGCGGCATTTGGAAT
Found at i:95959765 original size:41 final size:39
Alignment explanation
Indices: 95959606--95959765 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 39
95959596 CGTTTGGACC
* *
95959606 TAAAGCGCCACTATATCTCAGCTTTTT-GCGGCATTTTGAA
1 TAAAACGCCACTAT-TCTCAG-TTTTTAGCAGCATTTTGAA
* * *
95959646 TAAAACGCCACTATTTCTCAGTTTTTTGCAGCGTTTTGTA
1 TAAAACGCCACTA-TTCTCAGTTTTTAGCAGCATTTTGAA
*
95959686 TAAAAACGCCACTATTACTCAGTTTTTAGCAGCGTTTTGAA
1 T-AAAACGCCACTATT-CTCAGTTTTTAGCAGCATTTTGAA
*
95959727 TGAAAACGCCACTATTGCTCAGTTTTTAGCGGCATTTTG
1 T-AAAACGCCACTATT-CTCAGTTTTTAGCAGCATTTTG
95959766 TTTCAAACAC
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
39 5 0.05
40 31 0.29
41 70 0.66
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (39 bp):
TAAAACGCCACTATTCTCAGTTTTTAGCAGCATTTTGAA
Found at i:95959765 original size:82 final size:81
Alignment explanation
Indices: 95959611--95959766 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
95959601 GGACCTAAAG
* * *
95959611 CGCCACTATATCTCAGCTTTTTGCGGCATTTTGAATAAAACGCCACTATTTCTCAGTTTTTTGCA
1 CGCCACTATATCTCAGCTTTTTGCAGCATTTTGAATAAAACGCCACTATTGCTCAGTTTTTAGCA
*
95959676 GCGTTTTGTATAAAAA
66 GCATTTTGTATAAAAA
*
95959692 CGCCACTAT-TACTCAG-TTTTTAGCAGCGTTTTGAATGAAAACGCCACTATTGCTCAGTTTTTA
1 CGCCACTATAT-CTCAGCTTTTT-GCAGCATTTTGAAT-AAAACGCCACTATTGCTCAGTTTTTA
*
95959755 GCGGCATTTTGT
63 GCAGCATTTTGT
95959767 TTCAAACACC
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
80 6 0.09
81 26 0.39
82 34 0.52
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (81 bp):
CGCCACTATATCTCAGCTTTTTGCAGCATTTTGAATAAAACGCCACTATTGCTCAGTTTTTAGCA
GCATTTTGTATAAAAA
Found at i:95962637 original size:30 final size:30
Alignment explanation
Indices: 95962601--95962729 Score: 213
Period size: 30 Copynumber: 4.3 Consensus size: 30
95962591 CTAGCCTTTG
*
95962601 CCACCACCAACTCCACTAGCCACACCTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
95962631 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
95962661 CCACCATCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
95962691 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
95962721 CCACCACCA
1 CCACCACCA
95962730 CTTGTACCTA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 93 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:95963241 original size:23 final size:23
Alignment explanation
Indices: 95963207--95963339 Score: 69
Period size: 22 Copynumber: 5.7 Consensus size: 23
95963197 CTTTTTTTGT
95963207 TATTAT-TATATTTTTAATATTA
1 TATTATATATATTTTTAATATTA
*
95963229 TATTATATATATTCTTT--TAATA
1 TATTATATATATT-TTTAATATTA
** * *
95963251 TATTAGGTATATTCTAAAT-TCTA
1 TATTATATATATTTTTAATAT-TA
* * *
95963274 TATTACGTATATATATTATACTATTT
1 TATTA--TATATAT-TTTTAATATTA
* * *
95963300 TA-TGTATATATCTTTAATACTA
1 TATTATATATATTTTTAATATTA
95963322 TATTATTTATATATTTTT
1 TATTA--TATATATTTTT
95963340 TTCTACATGT
Statistics
Matches: 78, Mismatches: 21, Indels: 21
0.65 0.17 0.17
Matches are distributed among these distances:
21 1 0.01
22 29 0.37
23 22 0.28
24 3 0.04
25 16 0.21
26 6 0.08
27 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTTTTAATATTA
Found at i:95963309 original size:25 final size:25
Alignment explanation
Indices: 95963213--95963412 Score: 87
Period size: 25 Copynumber: 8.2 Consensus size: 25
95963203 TTGTTATTAT
* * *
95963213 TATATTTTTAATATTATATTATATA
1 TATATATTTAATACTATATTATGTA
* * *
95963238 TAT-TCTTT--TAATATATTAGGTA
1 TATATATTTAATACTATATTATGTA
* * * *
95963260 TAT-T-CTAAATTCTATATTACGTA
1 TATATATTTAATACTATATTATGTA
*
95963283 TATATA-TT-ATACTATTTTATGTA
1 TATATATTTAATACTATATTATGTA
* *
95963306 TATATCTTTAATACTATATTATTTA
1 TATATATTTAATACTATATTATGTA
* ** *
95963331 TATATTTTTTTCTACATGTTATCTTATGTA
1 TATA---TATT-TA-ATACTATATTATGTA
95963361 TATAT-TTTAAT--TATATTATGTA
1 TATATATTTAATACTATATTATGTA
* * * *
95963383 TGTATTTTTTACACTATATTATGTA
1 TATATATTTAATACTATATTATGTA
*
95963408 CATAT
1 TATAT
95963413 TTTTTTATAT
Statistics
Matches: 134, Mismatches: 27, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
21 1 0.01
22 29 0.22
23 35 0.26
24 10 0.07
25 36 0.27
26 2 0.01
27 1 0.01
28 3 0.02
29 2 0.01
30 15 0.11
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATTTAATACTATATTATGTA
Found at i:95963506 original size:25 final size:24
Alignment explanation
Indices: 95963478--95963533 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
95963468 GTTATATTTT
*
95963478 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
95963503 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
95963526 CACTATTA
1 CACTATTA
95963534 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:95975649 original size:88 final size:90
Alignment explanation
Indices: 95975475--95975651 Score: 250
Period size: 90 Copynumber: 2.0 Consensus size: 90
95975465 TATCTTTCAA
* * *
95975475 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCATACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCATACGCTGAGGTATTTTCAATT
95975540 TCCGTTTTTTCAATTTATGCTTTTC
66 TCCGTTTTTTCAATTTATGCTTTTC
** * *
95975565 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTTGGGGCAT-GGC-GAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCATACGCTGAGGTATTTTCAATT
** *
95975628 TCTTTTTTTTCAATTTCTGCTTTT
66 TCCGTTTTTTCAATTTATGCTTTT
95975652 AATTTCTATT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 35 0.45
89 2 0.03
90 40 0.52
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (90 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCATACGCTGAGGTATTTTCAATT
TCCGTTTTTTCAATTTATGCTTTTC
Found at i:95975664 original size:13 final size:13
Alignment explanation
Indices: 95975617--95975664 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
95975607 CATGGCGAGG
95975617 TATTTTTAATTTC
1 TATTTTTAATTTC
*
95975630 TTTTTTTTCAATTTC
1 -TATTTTT-AATTTC
**
95975645 TGCTTTTAATTTC
1 TATTTTTAATTTC
95975658 TATTTTT
1 TATTTTT
95975665 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 11 0.39
14 11 0.39
15 6 0.21
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:95975729 original size:101 final size:96
Alignment explanation
Indices: 95975560--95975826 Score: 289
Period size: 101 Copynumber: 2.8 Consensus size: 96
95975550 CAATTTATGC
* ** * *
95975560 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTTGGGGCATGGC-GAGGTATTTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA-CGCTGAGGTATTTTC
* * *
95975624 AATTTCTTTTTTTTCAATTTCTGCTTTTA-ATTTCTAT
65 AATTTC-TGTTTTTCAATTTCTGC-CTTACA----AAT
95975661 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
*
95975726 ATTTCTGTTTTTCAATTTTTGCCTTACAAAT
66 ATTTCTGTTTTTCAATTTCTGCCTTACAAAT
* * * * *
95975757 TCTGC-----TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
95975817 ATTT-TGTTTT
66 ATTTCTGTTTT
95975827 AAAATCAACT
Statistics
Matches: 150, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
90 6 0.04
91 56 0.37
96 5 0.03
99 3 0.02
100 18 0.12
101 62 0.41
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (96 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
ATTTCTGTTTTTCAATTTCTGCCTTACAAAT
Found at i:95975973 original size:73 final size:71
Alignment explanation
Indices: 95975762--95976308 Score: 663
Period size: 73 Copynumber: 7.7 Consensus size: 71
95975752 CAAATTCTGC
*
95975762 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAA-TTTTG-TT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTTTGTTT
95975825 TT-AAAA
65 TTAAAAA
95975831 TCAACTCATATTGC-AGA-GTGAGTTGAG-CTCAG--ACG-TGAGGT-ATTTCAA-TTTTGTTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTTTGTTTT
95975888 TCAAAAAAA
66 T---AAAAA
*
95975897 TCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTTTGTTT
95975962 GTTAAAAA
65 -TTAAAAA
*
95975970 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATTTTT-TTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTTTGTTT
*
95976034 GTCAAAAA
65 -TTAAAAA
* * *
95976042 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTTTGT-T
*
95976107 TTCAAAAAAA
64 TT--TAAAAA
* * *
95976117 TCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTAATTTCAATTTTTGTTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTTTGTTT-
*
95976181 TCAAAAA
65 TTAAAAA
* * *
95976188 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTTTTGT-T
*
95976253 TTCAAAAAAA
64 TT--TAAAAA
* * * *
95976263 TCAGCTCATATTGTGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
95976309 GTTTTCCATT
Statistics
Matches: 422, Mismatches: 30, Indels: 48
0.84 0.06 0.10
Matches are distributed among these distances:
61 12 0.03
62 10 0.02
63 2 0.00
65 1 0.00
66 22 0.05
67 12 0.03
68 13 0.03
69 18 0.04
70 1 0.00
71 35 0.08
72 71 0.17
73 132 0.31
74 13 0.03
75 78 0.18
76 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (71 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTTTGTTTT
TAAAAA
Found at i:95976200 original size:218 final size:215
Alignment explanation
Indices: 95975762--95976323 Score: 809
Period size: 218 Copynumber: 2.6 Consensus size: 215
95975752 CAAATTCTGC
* *
95975762 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTTGTTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTTTTT
95975827 --AAAATCAACTCATATTGC-AGA-GTGAGTTGAG-CTC-AGACGTGAGGTA-TTTCAATTT-TG
66 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGTGAGGTATTTTCAATTTCTG
* * *
95975884 TTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
131 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACGCTGAGGTAATT
*
95975949 TCAATTTTTGTTTGTTAAAAA
195 TCAATTTTTGTTTGTCAAAAA
*
95975970 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATTTTTTTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTTTT-
95976035 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
65 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACG-TGAGGTATTTTCAATT
* *
95976100 TCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTA
127 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTA
95976164 ATTTCAATTTTTGTTTGTCAAAAA
192 ATTTCAATTTTTGTTTGTCAAAAA
* * * *
95976188 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTT-T-T
* * * * *
95976253 TTCAAAAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCAT
64 TTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG-TGAGGTATTTTCAAT
95976318 TTCTGT
126 TTCTGT
95976324 TCTTCAATTT
Statistics
Matches: 318, Mismatches: 20, Indels: 21
0.89 0.06 0.06
Matches are distributed among these distances:
208 61 0.19
209 1 0.00
211 18 0.06
212 3 0.01
213 10 0.03
214 3 0.01
215 2 0.01
217 3 0.01
218 98 0.31
219 34 0.11
220 47 0.15
221 38 0.12
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (215 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTTTTT
CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGTGAGGTATTTTCAATTTCTG
TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTAATTT
CAATTTTTGTTTGTCAAAAA
Found at i:95976220 original size:146 final size:143
Alignment explanation
Indices: 95975762--95976308 Score: 747
Period size: 146 Copynumber: 3.8 Consensus size: 143
95975752 CAAATTCTGC
* *
95975762 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAA-TTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTT
*
95975826 T--AAAATCAACTCATATTGC-AGA-GTGAGTTG-AGCTC-AGACG-TGAGGT-ATTTCAA-TTT
66 TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATTTCAATTTT
*
95975882 TGTTTTTCAAAAAAA
131 TGTTTGTC--AAAAA
* *
95975897 TCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTT
* * * *
95975962 GTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAAT
66 -TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTAATTTCAAT
95976027 TTTT-TTTGTCAAAAA
128 TTTTGTTTGTCAAAAA
* * *
95976042 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGT-T
*
95976107 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATTTCAAT
65 TT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATTTCAAT
95976172 TTTTGTTTGTCAAAAA
128 TTTTGTTTGTCAAAAA
* * *
95976188 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGT-T
* *
95976253 TTCAAAAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACCTCAAGACGCTGAGGT
65 TT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGT
95976309 GTTTTCCATT
Statistics
Matches: 375, Mismatches: 20, Indels: 23
0.90 0.05 0.06
Matches are distributed among these distances:
135 54 0.14
136 8 0.02
137 1 0.00
139 18 0.05
140 3 0.01
141 8 0.02
142 3 0.01
145 91 0.24
146 136 0.36
147 49 0.13
148 4 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (143 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTT
TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAATTTCAATTTT
TGTTTGTCAAAAA
Found at i:95976432 original size:13 final size:14
Alignment explanation
Indices: 95976402--95976434 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
95976392 CGCTGAGGTA
95976402 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
95976416 TTTTCAAATAT-TGT
1 TTTTCAAAT-TCTGT
95976430 TTTTC
1 TTTTC
95976435 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:95976485 original size:93 final size:91
Alignment explanation
Indices: 95976237--95976781 Score: 383
Period size: 93 Copynumber: 6.0 Consensus size: 91
95976227 CGTTGAGGTA
* * * * *
95976237 TTTTCAATTTTTGTCTTTC-AAAAAAATCAGCTCATATTGTGAGAGGTGAGTTGAACCTC--A-A
1 TTTTCAATTTATGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACA
* * *
95976298 GACGCTGAGGTGTTTTCCATTTCTGT
66 CACGCTGAGGTATTTTCAATTTCTGT
* * * * * * *
95976324 TCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGGGAGTGGTGAGTTGAGCCT-TGACT
1 TTTTCAATTTATGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA--
*
95976388 CACACGCTGAGGTATTTTCAAATTCTGT
64 CACACGCTGAGGTATTTTCAATTTCTGT
* * *
95976416 TTTTCAA-ATATTGTTTTTCCAAAAAAAATCAACGCATATTGCGAGAGGTGAGTTTAGCCTCAGG
1 TTTTCAATTTA-TGTTTTT-CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
* * *
95976480 ACACA--CTGAGATATTTTTAATTTCTTTTTTT
63 ACACACGCTGAGGTATTTTCAATTTC----TGT
* * *
95976511 TTTTCAATTTATGTTTGTC-AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTC
1 TTTTCAATTTATGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAC
* * * *
95976575 ACACGCCGATGTATTTTCAATTGATGTTT
65 ACACGCTGAGGTATTTTCAATT--TCTGT
* * * ** *
95976604 TTTTTAATTTATG-CTTT--ACAAAAATCAACTCATATTATGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGAC
** * * **
95976666 ACATACCGAGATATTTTCAAAATCTGT
65 ACACGCTGAGGTATTTTCAATTTCTGT
* * * * *
95976693 TTTACAA--T-T-TTTTT---AAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTGG-CT
1 TTTTCAATTTATGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACA
* *
95976750 CACGTGCTGAGTTATTTTCAATTTATGT
66 CAC--GCTGAGGTATTTTCAATTTCTGT
95976778 TTTT
1 TTTT
95976782 AATGTCTAGT
Statistics
Matches: 367, Mismatches: 69, Indels: 46
0.76 0.14 0.10
Matches are distributed among these distances:
83 3 0.01
84 2 0.01
85 53 0.14
86 4 0.01
87 17 0.05
88 36 0.10
89 9 0.02
91 73 0.20
92 37 0.10
93 99 0.27
94 1 0.00
95 30 0.08
96 2 0.01
97 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (91 bp):
TTTTCAATTTATGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACA
CACGCTGAGGTATTTTCAATTTCTGT
Found at i:95976779 original size:85 final size:86
Alignment explanation
Indices: 95976531--95976849 Score: 247
Period size: 85 Copynumber: 3.6 Consensus size: 86
95976521 ATGTTTGTCA
*
95976531 AAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAGGTCACACGCCGA-TGTATTTTCA
1 AAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCT-AGGTCACATGCCGAGT-TATTTTCA
* **
95976594 ATTGATGTTTTTTTTAATTTATGCTTT
63 ATTTATG--TTTTACAATTTAT-CTTT
** * * * *
95976621 ACAAAAATCAACTCATATTATGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGATATTTTCAA
1 A-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGGTCACATGCCGAGTTATTTTCAA
** *
95976686 AATCTGTTTTACAATTT-T-TTT
64 TTTATGTTTTACAATTTATCTTT
* * * *
95976707 AAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGTTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGG-TCACATGCCGAGTTATTTTCAAT
*
95976772 TTATGTTTT-TAATGTCTAGT-TTT
65 TTATGTTTTACAAT-T-TA-TCTTT
* ** * * *
95976795 AAAGAGCCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATCACATGCCGAGT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGG-TCACATGCCGAGT
95976850 AAAGAATAAA
Statistics
Matches: 183, Mismatches: 37, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
84 5 0.03
85 59 0.32
86 5 0.03
87 2 0.01
88 46 0.25
89 9 0.05
90 1 0.01
91 55 0.30
92 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (86 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGTCACATGCCGAGTTATTTTCAATT
TATGTTTTACAATTTATCTTT
Found at i:95976922 original size:21 final size:21
Alignment explanation
Indices: 95976896--95976937 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
95976886 TTTATATCCC
95976896 TGAAGTTACAGTGAAGCTAAT
1 TGAAGTTACAGTGAAGCTAAT
* *
95976917 TGAAGTTGCAGTGGAGCTAAT
1 TGAAGTTACAGTGAAGCTAAT
95976938 CGAGGATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (21 bp):
TGAAGTTACAGTGAAGCTAAT
Found at i:95977501 original size:30 final size:30
Alignment explanation
Indices: 95977465--95977563 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
95977455 CTAGCCTTTG
95977465 CCACCACCAACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCATTAGCCACACTTGCT
*
95977495 CCACCACCAACTCCATTAGCCACATTTGCT
1 CCACCACCAACTCCATTAGCCACACTTGCT
*
95977525 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCATTAGCCACACTTGCT
95977555 CCACCACCA
1 CCACCACCA
95977564 CTTGTACCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.26, C:0.47, G:0.06, T:0.20
Consensus pattern (30 bp):
CCACCACCAACTCCATTAGCCACACTTGCT
Found at i:95978134 original size:25 final size:26
Alignment explanation
Indices: 95978106--95978165 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 26
95978096 CTATATTACG
*
95978106 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
95978131 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
95978156 TATATATATT
1 TATATATATT
95978166 TTTCTACATG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.07
25 25 0.86
26 2 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:95978189 original size:28 final size:28
Alignment explanation
Indices: 95978123--95978231 Score: 104
Period size: 28 Copynumber: 4.0 Consensus size: 28
95978113 ATTATACTAT
95978123 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
95978152 TTTATATATATATTTTTCTAC-ATGTTA
1 TTTATGTATATATTTTAATACTATATTA
95978179 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
95978206 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
95978231 T
1 T
95978232 GTACATATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.14
26 7 0.11
27 12 0.18
28 21 0.32
29 12 0.18
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:95978232 original size:25 final size:24
Alignment explanation
Indices: 95978182--95978244 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
95978172 CATGTTATCT
*
95978182 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
95978208 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
95978233 TACATATTTTTT
1 TATGTATTTTTT
95978245 TATATCTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:95978333 original size:25 final size:24
Alignment explanation
Indices: 95978305--95978360 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
95978295 GTTATATTTT
*
95978305 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
95978330 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
95978353 CACTATTA
1 CACTATTA
95978361 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:95981937 original size:47 final size:49
Alignment explanation
Indices: 95981820--95981998 Score: 196
Period size: 47 Copynumber: 3.8 Consensus size: 49
95981810 TGTAACCCGC
* * * *
95981820 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GC-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
* *
95981866 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
95981916 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
95981960 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
95981999 TTCAACCATC
Statistics
Matches: 112, Mismatches: 10, Indels: 19
0.79 0.07 0.13
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 1 0.01
46 35 0.31
47 57 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:95981988 original size:94 final size:93
Alignment explanation
Indices: 95981828--95981998 Score: 279
Period size: 94 Copynumber: 1.8 Consensus size: 93
95981818 GCCCATAAGT
* * *
95981828 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
95981893 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
95981921 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
95981986 ACGAGTTCGGATG
65 ACGAGTTCGGATG
95981999 TTCAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 27 0.38
94 44 0.62
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95989483 original size:47 final size:46
Alignment explanation
Indices: 95989371--95989506 Score: 218
Period size: 47 Copynumber: 2.9 Consensus size: 46
95989361 TGTAACCCGC
* * *
95989371 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
*
95989417 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTCACAT
*
95989464 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCA
95989507 ACCATCCTAG
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
46 40 0.48
47 43 0.52
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:95991923 original size:35 final size:36
Alignment explanation
Indices: 95991872--95991943 Score: 128
Period size: 35 Copynumber: 2.0 Consensus size: 36
95991862 TTTGTAAAGA
95991872 AAAAAAAAATGAAACATTTTCATTTGGAACTTAATG
1 AAAAAAAAATGAAACATTTTCATTTGGAACTTAATG
*
95991908 AAAAAAAAA-GGAACATTTTCATTTGGAACTTAATG
1 AAAAAAAAATGAAACATTTTCATTTGGAACTTAATG
95991943 A
1 A
95991944 CATTTATTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 26 0.74
36 9 0.26
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.29
Consensus pattern (36 bp):
AAAAAAAAATGAAACATTTTCATTTGGAACTTAATG
Found at i:95994773 original size:23 final size:23
Alignment explanation
Indices: 95994747--95994798 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
95994737 AATTAAAAAG
95994747 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
95994770 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
95994793 ATGAAA
1 ATGAAA
95994799 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:95999154 original size:23 final size:23
Alignment explanation
Indices: 95999128--95999179 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
95999118 AATTAAAAAG
95999128 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
95999151 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
95999174 ATGAAA
1 ATGAAA
95999180 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:96005980 original size:31 final size:30
Alignment explanation
Indices: 96005917--96005982 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 30
96005907 TAATTTATAT
* *
96005917 TTTTATAATTTTTAAAAGATTAAATTAAAA
1 TTTTATAATTTTTAAAAGACTAAAATAAAA
* * *
96005947 TTTTATCATTTTTAGAAGGACTAAAATACAA
1 TTTTATAATTTTTA-AAAGACTAAAATAAAA
96005978 TTTTA
1 TTTTA
96005983 CCTTTATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (30 bp):
TTTTATAATTTTTAAAAGACTAAAATAAAA
Found at i:96013464 original size:39 final size:38
Alignment explanation
Indices: 96013411--96013539 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 38
96013401 CGTTTAAACA
* *
96013411 AAAAACGCCGCTATAGTTCAGCATTAGCGGCGTTTCT-T
1 AAAAACGCCACTATAGATCAGCATTAGCGGCGTTT-TAT
* *
96013449 AACAAACGCCACTATAGATAAGACATTAGCGGCGTTTTTCT
1 AA-AAACGCCACTATAGATCAG-CATTAGCGGCG-TTTTAT
*
96013490 AAAAGCGCCACTATAGATCGAGCATTAGCGGCGCTTTTAT
1 AAAAACGCCACTATAGATC-AGCATTAGCGGCG-TTTTAT
96013530 AAAAAACGCC
1 -AAAAACGCC
96013540 GCAAATGTCC
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
38 2 0.03
39 16 0.21
40 43 0.56
41 16 0.21
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (38 bp):
AAAAACGCCACTATAGATCAGCATTAGCGGCGTTTTAT
Found at i:96013721 original size:113 final size:115
Alignment explanation
Indices: 96013591--96013815 Score: 251
Period size: 113 Copynumber: 2.0 Consensus size: 115
96013581 CTAATAATTT
* *** ** * *
96013591 CAGCAAGATGCAGTCGTTTCCTTTCGGCCCTTAGTTTCATTAGCGGCGTTTTCA-AAAAATGCCA
1 CAGCAAGACGCAGTCGTTTCCTTTCAAACCTTAGTGACATTAGCGGCATTTTCATAAAAACGCCA
*
96013655 CTAAAGGT-TAAGTATTAGCGGCGTTT-TT-TGGAAAACGCCGCAAAAAAAA
66 CTAAAGGTCT-AGTATTAGCGGCGTTTCTTAT-AAAAACGCCGCAAAAAAAA
* ** * * *
96013704 CAGCAAGACGCTGTCGTTTTGTTTTAAACCTTAGTGACATTAGCGGCATTTTTATAAAAACGCCG
1 CAGCAAGACGCAGTCGTTTCCTTTCAAACCTTAGTGACATTAGCGGCATTTTCATAAAAACGCCA
* *
96013769 CTATAGGTCTAGTATTAGTGGCGTTTCTTATAAAAACGCCGCAAAAA
66 CTAAAGGTCTAGTATTAGCGGCGTTTCTTATAAAAACGCCGCAAAAA
96013816 GTATTTTATG
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
113 42 0.46
114 30 0.33
115 18 0.20
116 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (115 bp):
CAGCAAGACGCAGTCGTTTCCTTTCAAACCTTAGTGACATTAGCGGCATTTTCATAAAAACGCCA
CTAAAGGTCTAGTATTAGCGGCGTTTCTTATAAAAACGCCGCAAAAAAAA
Found at i:96013865 original size:28 final size:29
Alignment explanation
Indices: 96013820--96013874 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
96013810 CAAAAAGTAT
*
96013820 TTTATGTATATATTTATT-ATTTAAATGG
1 TTTATGTATATATTTATTGATTAAAATGG
*
96013848 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATGTATATATT-TATTGATTAAAAT
96013875 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATGTATATATTTATTGATTAAAATGG
Found at i:96014289 original size:29 final size:28
Alignment explanation
Indices: 96014231--96014309 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
96014221 TAAAGTTTAG
* *
96014231 GGATTAGTGGG-TAAAGGTTAAGGGTTAT
1 GGATTA-TGGGTTTAAGGTTAAGGGTCAT
96014259 GGATTATGGGTTTAAGGATTAAGGGTCAT
1 GGATTATGGGTTTAAGG-TTAAGGGTCAT
*
96014288 GGGTTATGGGTTTAATGGTTAA
1 GGATTATGGGTTTAA-GGTTAA
96014310 AGGGATATGG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 4 0.09
28 11 0.24
29 28 0.62
30 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.37, T:0.35
Consensus pattern (28 bp):
GGATTATGGGTTTAAGGTTAAGGGTCAT
Found at i:96014797 original size:26 final size:27
Alignment explanation
Indices: 96014724--96014798 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
96014714 AATAATTTAA
*
96014724 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
96014750 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
96014776 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
96014799 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:96014943 original size:18 final size:17
Alignment explanation
Indices: 96014912--96014946 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
96014902 TAGTTGATTG
*
96014912 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
96014929 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
96014947 AATAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:96015399 original size:13 final size:13
Alignment explanation
Indices: 96015381--96015410 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
96015371 CTTAAGTGTT
96015381 TTTCCCCTAAAAC
1 TTTCCCCTAAAAC
*
96015394 TTTCCCCTAAAAT
1 TTTCCCCTAAAAC
96015407 TTTC
1 TTTC
96015411 AGCAATTCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40
Consensus pattern (13 bp):
TTTCCCCTAAAAC
Found at i:96018960 original size:242 final size:242
Alignment explanation
Indices: 96018535--96019157 Score: 1201
Period size: 242 Copynumber: 2.6 Consensus size: 242
96018525 GCTCCATCAG
96018535 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
1 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
* * *
96018600 CTGTAAGATATAATGGATCCTCTCTAGGTGTAACAACGTCACATATGATGAATCTTAAAAAATTC
66 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
96018665 AAAAATACTTGAAAAAAATTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTT
131 AAAAATACTTGAAAAAAATTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTT
*
96018730 GCTTGTCCATTAAAATGACAACAATATCTGACCTTCTCTCCAACCTT
196 GCTTGTCCATTAAAATGACAACAATATCTGACATTCTCTCCAACCTT
96018777 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
1 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
96018842 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
66 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
96018907 AAAAATACTTGAAAAAAATTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTT
131 AAAAATACTTGAAAAAAATTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTT
*
96018972 GCTTGTCCATTAAAATTACAACAATATCTGACATTCTCTCCAACCTT
196 GCTTGTCCATTAAAATGACAACAATATCTGACATTCTCTCCAACCTT
96019019 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
1 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
96019084 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
66 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
96019149 AAAAATACT
131 AAAAATACT
96019158 GATATTGATC
Statistics
Matches: 376, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 376 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33
Consensus pattern (242 bp):
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAATACTTGAAAAAAATTTCTATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTT
GCTTGTCCATTAAAATGACAACAATATCTGACATTCTCTCCAACCTT
Found at i:96019197 original size:9 final size:9
Alignment explanation
Indices: 96019182--96019298 Score: 99
Period size: 9 Copynumber: 12.3 Consensus size: 9
96019172 CTTAAAGAAA
96019182 TTACATAAC
1 TTACATAAC
*
96019191 GTACATAAC
1 TTACATAAC
* *
96019200 TCATATAAC
1 TTACATAAC
*
96019209 TTACATAAT
1 TTACATAAC
96019218 TTACATAACAAC
1 TTACAT---AAC
96019230 TTACATAAC
1 TTACATAAC
*
96019239 TCACATAAC
1 TTACATAAC
*
96019248 TTACATAAT
1 TTACATAAC
*
96019257 TTACATATC
1 TTACATAAC
*
96019266 TCACATAAC
1 TTACATAAC
*
96019275 GTACATAACAAC
1 TTACAT---AAC
96019287 TTACATAAC
1 TTACATAAC
96019296 TTA
1 TTA
96019299 ACTAATACAT
Statistics
Matches: 84, Mismatches: 18, Indels: 12
0.74 0.16 0.11
Matches are distributed among these distances:
9 68 0.81
12 16 0.19
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:96019272 original size:57 final size:57
Alignment explanation
Indices: 96019184--96019296 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
96019174 TAAAGAAATT
* * **
96019184 ACATAACGTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACGTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* * * *
96019241 ACATAACTTACATAATTTACATATCTCACATAACGTACATAACAACTTACATAACT
1 ACATAACGTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
96019297 TAACTAATAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (57 bp):
ACATAACGTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:96021147 original size:12 final size:12
Alignment explanation
Indices: 96021130--96021155 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
96021120 AAGATCGAGG
96021130 GATGAATCTGAT
1 GATGAATCTGAT
96021142 GATGAATCTGAT
1 GATGAATCTGAT
96021154 GA
1 GA
96021156 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:96025226 original size:31 final size:31
Alignment explanation
Indices: 96025180--96025246 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
96025170 TGGTTGTATT
* *
96025180 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
96025211 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
96025242 TTTTA
1 TTTTA
96025247 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:96025346 original size:43 final size:43
Alignment explanation
Indices: 96025320--96025482 Score: 274
Period size: 43 Copynumber: 3.8 Consensus size: 43
96025310 GTAGAAAAAG
96025320 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
1 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
* * *
96025363 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCTCACAAA
1 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
* *
96025406 C-GCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCACAAA
1 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
96025448 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
96025483 TTCCAATAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
42 38 0.34
43 73 0.66
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (43 bp):
CACCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAA
Found at i:96025445 original size:85 final size:85
Alignment explanation
Indices: 96025323--96025482 Score: 293
Period size: 85 Copynumber: 1.9 Consensus size: 85
96025313 GAAAAAGCAC
*
96025323 CGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAG
1 CGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACACCGCTAAAAGCCTTGACCTTTAG
96025388 CGGCGCTTTTCTCACAAACG
66 CGGCGCTTTTCTCACAAACG
*
96025408 CGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCACAAACACCGCTAAAAGCCTTGACCTTTAG
1 CGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACACCGCTAAAAGCCTTGACCTTTAG
*
96025473 CGGCGTTTTT
66 CGGCGCTTTT
96025483 TTCCAATAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (85 bp):
CGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTCCCACAAACACCGCTAAAAGCCTTGACCTTTAG
CGGCGCTTTTCTCACAAACG
Found at i:96037448 original size:42 final size:43
Alignment explanation
Indices: 96037347--96037489 Score: 166
Period size: 43 Copynumber: 3.3 Consensus size: 43
96037337 AGCTCGTATA
* * * *
96037347 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATCG
* *
96037390 ATGCC-ACTGTCTCAGACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCATATATCG
* *
96037432 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-TCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAT-ATATCG
96037476 ATGCCAACGTCCCA
1 ATGCCAACGTCCCA
96037490 TATGTGGTAT
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
42 30 0.36
43 39 0.46
44 15 0.18
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:96044295 original size:20 final size:20
Alignment explanation
Indices: 96044253--96044295 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
96044243 ATTATTTTAG
* *
96044253 AAATTTAAAAATAGATATTT
1 AAATTTAAAAATAGACATAT
**
96044273 AAATTTAAATTTAGACATAT
1 AAATTTAAAAATAGACATAT
96044293 AAA
1 AAA
96044296 AGAGAATAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (20 bp):
AAATTTAAAAATAGACATAT
Found at i:96056247 original size:14 final size:14
Alignment explanation
Indices: 96056228--96056258 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
96056218 ATCTAAACAA
96056228 TAACAACAAAATAG
1 TAACAACAAAATAG
*
96056242 TAACAACATAATAG
1 TAACAACAAAATAG
96056256 TAA
1 TAA
96056259 AATAGTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:96061669 original size:12 final size:11
Alignment explanation
Indices: 96061654--96061766 Score: 59
Period size: 12 Copynumber: 9.4 Consensus size: 11
96061644 CAATAGTGAA
96061654 AATAATAAGTAT
1 AATAATAA-TAT
96061666 AATAATAAATAT
1 AATAAT-AATAT
* *
96061678 AATGATATATAA
1 AATAATA-ATAT
*
96061690 AATAATACTAT
1 AATAATAATAT
*
96061701 ATATAAAAAGTAT
1 A-ATAATAA-TAT
96061714 -ATATATACACGTAT
1 AATA-ATA-A--TAT
96061728 AATAA-AATAT
1 AATAATAATAT
*
96061738 ATATACTAATATT
1 A-ATAATAATA-T
96061751 AATAATAAATAT
1 AATAAT-AATAT
96061763 AATA
1 AATA
96061767 TGGGTAAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
10 4 0.05
11 10 0.13
12 44 0.56
13 13 0.16
14 5 0.06
15 3 0.04
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (11 bp):
AATAATAATAT
Found at i:96061716 original size:15 final size:17
Alignment explanation
Indices: 96061682--96061720 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
96061672 AAATATAATG
96061682 ATATATAAAATAATACT
1 ATATATAAAATAATACT
*
96061699 ATATATAAAA-AGTA-T
1 ATATATAAAATAATACT
96061714 ATATATA
1 ATATATA
96061721 CACGTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 3 0.14
17 10 0.48
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (17 bp):
ATATATAAAATAATACT
Found at i:96061814 original size:24 final size:25
Alignment explanation
Indices: 96061787--96061843 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
96061777 TAGATATAAT
*
96061787 AATATGTACATAATATGGTA-TTAA
1 AATATGTACATAATATAGTATTTAA
* *
96061811 AATATATATATAATATAGTATTTAA
1 AATATGTACATAATATAGTATTTAA
*
96061836 AAAATGTA
1 AATATGTA
96061844 TACATAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.39
Consensus pattern (25 bp):
AATATGTACATAATATAGTATTTAA
Found at i:96062029 original size:27 final size:27
Alignment explanation
Indices: 96061999--96062062 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
96061989 TATAAAAACA
*
96061999 ATATAGTATTAAA-GATATATACATAAT
1 ATATA-TATTAAATCATATATACATAAT
** *
96062026 ATATATAAAAAATCATATATACATGAT
1 ATATATATTAAATCATATATACATAAT
96062053 ATATATATTA
1 ATATATATTA
96062063 GCAACAATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (27 bp):
ATATATATTAAATCATATATACATAAT
Found at i:96062177 original size:25 final size:26
Alignment explanation
Indices: 96062123--96062203 Score: 82
Period size: 25 Copynumber: 3.3 Consensus size: 26
96062113 ACATATATAC
*
96062123 ATATATA-AATAATAATGGTATTAG-A
1 ATATATACAATAAT-ATAGTATTAGAA
96062148 A-ATATACAAT-ATATAGTATTAGAA
1 ATATATACAATAATATAGTATTAGAA
* * *
96062172 ATATATAC-ATAAAATAGTATAAAAA
1 ATATATACAATAATATAGTATTAGAA
96062197 ATATATA
1 ATATATA
96062204 ACTAATGACA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
23 9 0.19
24 11 0.23
25 28 0.58
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (26 bp):
ATATATACAATAATATAGTATTAGAA
Found at i:96062251 original size:13 final size:15
Alignment explanation
Indices: 96062230--96062262 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
96062220 TATATACATA
96062230 ATAATA-TATAAAAAT
1 ATAATATTA-AAAAAT
96062245 ATAATATTAAAAAAT
1 ATAATATTAAAAAAT
96062260 ATA
1 ATA
96062263 TGTACATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATATTAAAAAAT
Found at i:96062287 original size:24 final size:24
Alignment explanation
Indices: 96062218--96062325 Score: 94
Period size: 24 Copynumber: 4.3 Consensus size: 24
96062208 ATGACATTAA
* * *
96062218 AATATATACATAATAATATATA-AA
1 AATATATATA-AAAAATATATACAT
96062242 AATATAATATTAAAAAATATATGTACAT
1 AATAT-ATA-TAAAAAATATA--TACAT
*
96062270 AACATATATAAAAAATATATACAT
1 AATATATATAAAAAATATATACAT
* *
96062294 AATATAGTAT-TAAAATATTTACAT
1 AATATA-TATAAAAAATATATACAT
96062318 AATATATA
1 AATATATA
96062326 CATATATATA
Statistics
Matches: 71, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
23 2 0.03
24 33 0.46
25 14 0.20
26 12 0.17
27 5 0.07
28 5 0.07
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (24 bp):
AATATATATAAAAAATATATACAT
Found at i:96062345 original size:21 final size:20
Alignment explanation
Indices: 96062321--96062369 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
96062311 TTTACATAAT
*
96062321 ATATACATATATATATTAAAGAT
1 ATATACATATATA-A-TAAA-AC
*
96062344 ATATGCATATATAATAAAAC
1 ATATACATATATAATAAAAC
96062364 ATATAC
1 ATATAC
96062370 TAATATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.26
21 4 0.17
22 1 0.04
23 12 0.52
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (20 bp):
ATATACATATATAATAAAAC
Found at i:96064375 original size:75 final size:75
Alignment explanation
Indices: 96064252--96064423 Score: 238
Period size: 75 Copynumber: 2.2 Consensus size: 75
96064242 AGCAAAAATT
* * * *
96064252 AAAAACAGAAATTGAAAATATCTCGGCATGTGGCCCGAGGGTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCACAATATGAG
96064317 TTGATTTTTG
66 TTGATTTTTG
*
96064327 AAAAACTGAAATTGAAAATACCTCGG-AGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGA
1 AAAAACAGAAATTGAAAATACCTCGGCA-TGTGACCCGAGGCTCAACTCACCTCTCACAATATGA
96064391 GTTGATTTTTCTTG
65 GTTGA--TTT-TTG
*
96064405 AAAAAGCAGAAATTAAAAA
1 AAAAA-CAGAAATTGAAAA
96064424 ACAAAACTTG
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
74 1 0.01
75 62 0.73
77 3 0.04
78 8 0.09
79 11 0.13
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCACAATATGAG
TTGATTTTTG
Found at i:96064469 original size:168 final size:159
Alignment explanation
Indices: 96064170--96064557 Score: 527
Period size: 168 Copynumber: 2.4 Consensus size: 159
96064160 AAAGTAAAAA
* * * *
96064170 AAATTAAGAATACCTCAGTGTGTGACCTGAGGCTCAACTCCCCTCTCTCAATATGAGTTGA-TTT
1 AAATTAA-AATACCTCAGAGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
*
96064234 TCTTGAAAAGCAAAAATTAAAAACAGAAATTGAAAATATCTCGGCATGTGGCCCGAGGGTCAACT
65 TCTTGAAAAGCAAAAATTAAAAACAGAAATTGAAAATATCTCGGCATGTGGCCCGAGGCTCAACT
*
96064299 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACT
130 CACCTCTCACAATATGAGTTGA----T-AAAAACT
*
96064334 GAAATTGAAAATACCTCGGAGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 -AAATT-AAAATACCTCAGAGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
*
96064399 TTCTTGAAAAAGCAGAAATTAAAAAACA-AAACTTGAAAATATCTCGGCATGTGGCCCGAGGCTC
64 TTCTTG-AAAAGCAAAAATT-AAAAACAGAAA-TTGAAAATATCTCGGCATGTGGCCCGAGGCTC
*
96064463 AACTCACCTCTCACAATATGAGTTGATAGAAACT
126 AACTCACCTCTCACAATATGAGTTGATAAAAACT
* * *
96064497 --A--AAAATACGTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTAAAATACCTCAGAGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
96064558 GAAAAAACAA
Statistics
Matches: 205, Mismatches: 13, Indels: 18
0.87 0.06 0.08
Matches are distributed among these distances:
157 56 0.27
160 1 0.00
163 6 0.03
164 1 0.00
165 53 0.26
166 10 0.05
167 15 0.07
168 63 0.31
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (159 bp):
AAATTAAAATACCTCAGAGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
CTTGAAAAGCAAAAATTAAAAACAGAAATTGAAAATATCTCGGCATGTGGCCCGAGGCTCAACTC
ACCTCTCACAATATGAGTTGATAAAAACT
Found at i:96076194 original size:22 final size:22
Alignment explanation
Indices: 96076166--96076210 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
96076156 AATGGATGAA
*
96076166 TGAATAAATCACAAATGAATGT
1 TGAATAAATCACAAATAAATGT
* *
96076188 TGAATAAATGACGAATAAATGT
1 TGAATAAATCACAAATAAATGT
96076210 T
1 T
96076211 AGTCATGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.29
Consensus pattern (22 bp):
TGAATAAATCACAAATAAATGT
Found at i:96079617 original size:18 final size:17
Alignment explanation
Indices: 96079576--96079642 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 17
96079566 AACAATAGTG
96079576 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
96079594 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
*
96079613 AAAATAATACTATATATA
1 AAAAT-ATAATATATATA
*
96079631 AAAGTAT-ATATA
1 AAAATATAATATA
96079643 CACACGTATA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
16 4 0.10
17 3 0.07
18 23 0.55
19 12 0.29
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:96079736 original size:22 final size:22
Alignment explanation
Indices: 96079702--96079755 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
96079692 GTAAAAATAG
* * *
96079702 ATATAATAATAATATGTACATA
1 ATATAGTATTAATATATACATA
* *
96079724 ATATGGTATTAATATATATATA
1 ATATAGTATTAATATATACATA
96079746 ATATAGTATT
1 ATATAGTATT
96079756 TAAAAAATGT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (22 bp):
ATATAGTATTAATATATACATA
Found at i:96079873 original size:15 final size:15
Alignment explanation
Indices: 96079853--96079904 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
96079843 AGTATTAAAG
96079853 ATATATACATAATAT
1 ATATATACATAATAT
* *
96079868 ATATATA-AAAAAAT
1 ATATATACATAATAT
*
96079882 CATATATACATGATAT
1 -ATATATACATAATAT
96079898 ATATATA
1 ATATATA
96079905 TTAGAAACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 5 0.17
15 21 0.70
16 4 0.13
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (15 bp):
ATATATACATAATAT
Found at i:96080016 original size:25 final size:23
Alignment explanation
Indices: 96079972--96080086 Score: 94
Period size: 22 Copynumber: 5.0 Consensus size: 23
96079962 ATATATAAAT
* *
96079972 AATAATGGTATTAGAA-ATATAC
1 AATAATAGTATTAAAATATATAC
96079994 AATATATAGTATTAGAAATATATAC
1 AATA-ATAGTATTA-AAATATATAC
* *
96080019 ATAAAATAGTATAAAAAATATATA-
1 A-ATAATAGTAT-TAAAATATATAC
*
96080043 ACTAAT-GATATTAAAATATATAC
1 AATAATAG-TATTAAAATATATAC
* *
96080066 -ATAATAATATTAAAAAATATA
1 AATAATAGTATTAAAATATATA
96080087 ATATTAAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
22 32 0.43
23 14 0.19
24 3 0.04
25 23 0.31
26 3 0.04
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.33
Consensus pattern (23 bp):
AATAATAGTATTAAAATATATAC
Found at i:96080061 original size:22 final size:23
Alignment explanation
Indices: 96079962--96080160 Score: 84
Period size: 22 Copynumber: 8.7 Consensus size: 23
96079952 ACGTACATAT
96079962 ATATATAA-ATAATAATGGTATTAGAA
1 ATATATAACATAATAA---TATTA-AA
* * *
96079988 ATATACAATAT-ATAGTATTAGAA
1 ATATATAACATAATAATATTA-AA
96080011 ATATAT-ACATAA-AATAGTATAAAAA
1 ATATATAACATAATAATA-T-T--AAA
*
96080036 ATATATAAC-TAATGATATTAAA
1 ATATATAACATAATAATATTAAA
96080058 ATATAT-ACATAATAATATTAAA
1 ATATATAACATAATAATATTAAA
* *
96080080 A-A-AT---ATAATATTA-AAAA
1 ATATATAACATAATAATATTAAA
* *
96080097 ATATATGTACATAA-CATATATAAA
1 ATATAT-AACATAATAATAT-TAAA
*
96080121 AAATATATACATAATATAGTATTAAA
1 ATATATA-ACATAATA-A-TATTAAA
*
96080147 ATAT-TTACATAATA
1 ATATATAACATAATA
96080161 TATACATATT
Statistics
Matches: 135, Mismatches: 17, Indels: 44
0.69 0.09 0.22
Matches are distributed among these distances:
17 4 0.03
18 9 0.07
19 2 0.01
20 2 0.01
21 3 0.02
22 30 0.22
23 19 0.14
24 24 0.18
25 13 0.10
26 24 0.18
27 5 0.04
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATATAACATAATAATATTAAA
Found at i:96080102 original size:17 final size:15
Alignment explanation
Indices: 96080069--96080101 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
96080059 TATATACATA
96080069 ATAATATTAAAAAAT
1 ATAATATTAAAAAAT
96080084 ATAATATTAAAAAAT
1 ATAATATTAAAAAAT
96080099 ATA
1 ATA
96080102 TGTACATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATATTAAAAAAT
Found at i:96080127 original size:26 final size:25
Alignment explanation
Indices: 96080058--96080164 Score: 94
Period size: 24 Copynumber: 4.2 Consensus size: 25
96080048 TGATATTAAA
* * * *
96080058 ATATATACATAATAATATTAAAAAAT
1 ATATATAAAAAAT-ATATTACATAAT
*
96080084 ATAATATTAAAAAATATATGTACATAAC
1 AT-ATA-TAAAAAATATAT-TACATAAT
96080112 ATATATAAAAAATATA-TACATAAT
1 ATATATAAAAAATATATTACATAAT
*
96080136 ATAGTAT-TAAAATAT-TTACATAAT
1 ATA-TATAAAAAATATATTACATAAT
96080160 ATATA
1 ATATA
96080165 CATATTAGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
23 2 0.03
24 28 0.41
25 3 0.04
26 13 0.19
27 10 0.14
28 13 0.19
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (25 bp):
ATATATAAAAAATATATTACATAAT
Found at i:96080136 original size:11 final size:11
Alignment explanation
Indices: 96080112--96080168 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
96080102 TGTACATAAC
* *
96080112 ATATATAAAAA
1 ATATATACATA
96080123 ATATATACATA
1 ATATATACATA
* *
96080134 ATATAGTATTAAA
1 ATATA-TA-CATA
*
96080147 ATATTTACATA
1 ATATATACATA
96080158 ATATATACATA
1 ATATATACATA
96080169 TTAGAAATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
11 26 0.72
12 4 0.11
13 6 0.17
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (11 bp):
ATATATACATA
Found at i:96080163 original size:13 final size:13
Alignment explanation
Indices: 96080058--96080164 Score: 57
Period size: 13 Copynumber: 8.4 Consensus size: 13
96080048 TGATATTAAA
96080058 ATATATACATAAT
1 ATATATACATAAT
* *
96080071 A-ATATTAAAAAAT
1 ATATA-TACATAAT
* *
96080084 ATAATATTAAAAAAT
1 AT-ATA-TACATAAT
* *
96080099 ATATGTACATAAC
1 ATATATACATAAT
*
96080112 ATATATA-A-AAA
1 ATATATACATAAT
96080123 ATATATACATAAT
1 ATATATACATAAT
96080136 ATAGTATTA-A-AAT
1 ATA-TA-TACATAAT
96080149 AT-T-TACATAAT
1 ATATATACATAAT
96080160 ATATA
1 ATATA
96080165 CATATTAGAA
Statistics
Matches: 74, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
9 2 0.03
10 1 0.01
11 15 0.20
12 6 0.08
13 29 0.39
14 5 0.07
15 16 0.22
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:96080272 original size:3 final size:3
Alignment explanation
Indices: 96080266--96080315 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
96080256 CTACTACTAC
* * * *
96080266 TAA TAA TAA TAA TAA TAA T-A TTA TTA TTA TTA TAA T-A TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
96080312 TAA T
1 TAA T
96080316 GTTAAAAGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
2 4 0.09
3 40 0.91
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (3 bp):
TAA
Found at i:96080939 original size:20 final size:19
Alignment explanation
Indices: 96080902--96080941 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
96080892 AGGTAAAATT
*
96080902 TTTTTTATATTTTTTAATA
1 TTTTTTATATTTTATAATA
*
96080921 TTTTTTATGTATTTATAATA
1 TTTTTTATAT-TTTATAATA
96080941 T
1 T
96080942 ATGTATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTTTTATATTTTATAATA
Found at i:96081540 original size:10 final size:10
Alignment explanation
Indices: 96081525--96081561 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
96081515 TCCACTCAAA
*
96081525 ATAAACATAT
1 ATAAACAGAT
96081535 ATAAACAGAT
1 ATAAACAGAT
*
96081545 ATAAATAGAT
1 ATAAACAGAT
96081555 ATAAACA
1 ATAAACA
96081562 TATTCCGCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (10 bp):
ATAAACAGAT
Found at i:96082662 original size:12 final size:12
Alignment explanation
Indices: 96082627--96082664 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
96082617 TCTATCCTAA
*
96082627 TATTTTTATAAA
1 TATTTTTATAAT
*
96082639 TATTTTTTTAAT
1 TATTTTTATAAT
96082651 TATTTTTATAAT
1 TATTTTTATAAT
96082663 TA
1 TA
96082665 AAATGATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TATTTTTATAAT
Found at i:96092546 original size:27 final size:26
Alignment explanation
Indices: 96092488--96092547 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
96092478 CATAGTATAT
* *
96092488 ATATACATATAATATAATTATTAAGA
1 ATATACATACAATATAAGTATTAAGA
*
96092514 AAATACATACAATATATAGTATTAAGA
1 ATATACATACAATATA-AGTATTAAGA
96092541 ATATACA
1 ATATACA
96092548 CAATACATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATATACATACAATATAAGTATTAAGA
Found at i:96092550 original size:25 final size:26
Alignment explanation
Indices: 96092498--96092557 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
96092488 ATATACATAT
*
96092498 AATATA-ATTATTAAGAAAATACATAC
1 AATATATAGTATTAAGAAAATACA-AC
*
96092524 AATATATAGTATTAAGAATATAC-AC
1 AATATATAGTATTAAGAAAATACAAC
*
96092549 AATACATAG
1 AATATATAG
96092558 GGTATTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 10 0.33
26 6 0.20
27 14 0.47
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (26 bp):
AATATATAGTATTAAGAAAATACAAC
Found at i:96092579 original size:15 final size:15
Alignment explanation
Indices: 96092559--96092588 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
96092549 AATACATAGG
96092559 GTATTAAAAAACATA
1 GTATTAAAAAACATA
96092574 GTATTAAAAAACATA
1 GTATTAAAAAACATA
96092589 ATATACACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (15 bp):
GTATTAAAAAACATA
Found at i:96092819 original size:16 final size:17
Alignment explanation
Indices: 96092789--96092821 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
96092779 GCAGAATAAT
96092789 AAATATAATAATATATG
1 AAATATAATAATATATG
*
96092806 AAAT-TAATACTATATG
1 AAATATAATAATATATG
96092822 TAAAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATATAATAATATATG
Found at i:96092907 original size:24 final size:24
Alignment explanation
Indices: 96092880--96092957 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
96092870 AGATATAATA
96092880 ATATACGTAATATGATATAAAAAT
1 ATATACGTAATATGATATAAAAAT
* * * *
96092904 ATATATGTATGTAATAGTATTTAAGAAT
1 ATATACGTA-AT-AT-G-ATATAAAAAT
* *
96092932 ATATACGTAAGATAATATAAAAAT
1 ATATACGTAATATGATATAAAAAT
96092956 AT
1 AT
96092958 GTACATAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
24 18 0.45
25 1 0.03
26 4 0.10
27 1 0.03
28 16 0.40
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (24 bp):
ATATACGTAATATGATATAAAAAT
Found at i:96093161 original size:12 final size:14
Alignment explanation
Indices: 96093105--96093154 Score: 52
Period size: 15 Copynumber: 3.7 Consensus size: 14
96093095 ATATTTAAAA
96093105 TAATACT-AAATA-
1 TAATACTAAAATAG
96093117 TAATA-TAAAATAG
1 TAATACTAAAATAG
*
96093130 TAATAATAATAATAG
1 TAATACTAA-AATAG
*
96093145 CAATACTAAA
1 TAATACTAAA
96093155 TGTAATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 1 0.03
12 10 0.31
13 5 0.16
14 4 0.12
15 12 0.38
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (14 bp):
TAATACTAAAATAG
Found at i:96093883 original size:16 final size:15
Alignment explanation
Indices: 96093855--96093908 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
96093845 AAAAAGTAAA
* *
96093855 ATTTTATTTTATTTT
1 ATTTTTTTTTATTAT
96093870 ATTTTTTTTGTATTAT
1 ATTTTTTTT-TATTAT
*
96093886 ATTTTTTTATATTTAT
1 ATTTTTTTTTA-TTAT
96093902 ATGTTTT
1 AT-TTTT
96093909 ATATATATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 10 0.30
16 19 0.58
17 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (15 bp):
ATTTTTTTTTATTAT
Found at i:96093890 original size:15 final size:16
Alignment explanation
Indices: 96093861--96093914 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 16
96093851 TAAAATTTTA
96093861 TTTTAT-TTTAT-TTT
1 TTTTATATTTATATTT
*
96093875 TTTTGTA-TTATATTT
1 TTTTATATTTATATTT
96093890 TTTTATATTTATATGTT
1 TTTTATATTTATAT-TT
*
96093907 TTATATAT
1 TTTTATAT
96093915 ATGTGTGGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 9 0.27
15 9 0.27
16 6 0.18
17 9 0.27
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (16 bp):
TTTTATATTTATATTT
Found at i:96102466 original size:96 final size:96
Alignment explanation
Indices: 96102228--96102469 Score: 335
Period size: 96 Copynumber: 2.5 Consensus size: 96
96102218 ATGTCATTAG
* * * * *
96102228 GAGCTTCATTAAGTTGGTTTCGGGTCATGATATTAGCACTTTGGGTGCAAGTTACATTGATTTGG
1 GAGCTTCATTGATTTGGCTTCGGGTCATGATATTAGCACTTAGGGTGCGAGTTACATTGATTTGG
*
96102293 CTTCGGACCATGATATTGGCACTTCGGGTGC
66 CTTCGGACCATGATATTGGCACTTCGAGTGC
* * *
96102324 GAACTTCATTGATTTGGCGTCGGGTCATGATATTAGCACTTCGGGTGCGAGTTACATTGATTTGG
1 GAGCTTCATTGATTTGGCTTCGGGTCATGATATTAGCACTTAGGGTGCGAGTTACATTGATTTGG
*
96102389 CTTTGTG-CCATGATATTGGCACTTCGAGTGC
66 CTTCG-GACCATGATATTGGCACTTCGAGTGC
* **
96102420 GAGCTTCATTGATTTGGCTTCGGGCCATGATATGGGCA-TCTAGGGTGCGA
1 GAGCTTCATTGATTTGGCTTCGGGTCATGATATTAGCACT-TAGGGTGCGA
96102470 AACTTCCAAG
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 127 0.98
97 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.34
Consensus pattern (96 bp):
GAGCTTCATTGATTTGGCTTCGGGTCATGATATTAGCACTTAGGGTGCGAGTTACATTGATTTGG
CTTCGGACCATGATATTGGCACTTCGAGTGC
Found at i:96102469 original size:48 final size:48
Alignment explanation
Indices: 96102228--96102457 Score: 284
Period size: 48 Copynumber: 4.8 Consensus size: 48
96102218 ATGTCATTAG
* * * * * *
96102228 GAGCTTCATTAAGTTGGTTTCGGGTCATGATATTAGCACTTTGGGTGC
1 GAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGC
* *
96102276 AAG-TTACATTGATTTGGCTTCGGACCATGATATTGGCACTTCGGGTGC
1 GAGCTT-CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGC
* * * *
96102324 GAACTTCATTGATTTGGCGTCGGGTCATGATATTAGCACTTCGGGTGC
1 GAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGC
* * *
96102372 GAG-TTACATTGATTTGGCTTTGTGCCATGATATTGGCACTTCGAGTGC
1 GAGCTT-CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGC
*
96102420 GAGCTTCATTGATTTGGCTTCGGGCCATGATATGGGCA
1 GAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCA
96102458 TCTAGGGTGC
Statistics
Matches: 154, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
47 4 0.03
48 146 0.95
49 4 0.03
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.35
Consensus pattern (48 bp):
GAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGC
Found at i:96110125 original size:96 final size:96
Alignment explanation
Indices: 96109954--96110136 Score: 294
Period size: 96 Copynumber: 1.9 Consensus size: 96
96109944 ATGTCATTAG
* * * *
96109954 GAGCTTTATTGAGTTGGTTTTGGGCCATGATATTAGCACTTCGGGTGCGAGTTACTTTGATTTGG
1 GAGCTTCATTGAGTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACATTGATTTGG
96110019 CTTCGAGCCATGATATTGGCACTTTATGTGT
66 CTTCGAGCCATGATATTGGCACTTTATGTGT
* *
96110050 GAGCTTCATTGATTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCGAGTTACATTGATTTGG
1 GAGCTTCATTGAGTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACATTGATTTGG
* *
96110115 CTTTGGGCCATGATATTGGCAC
66 CTTCGAGCCATGATATTGGCAC
96110137 CTAGGGTGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.38
Consensus pattern (96 bp):
GAGCTTCATTGAGTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGCGAGTTACATTGATTTGG
CTTCGAGCCATGATATTGGCACTTTATGTGT
Found at i:96110144 original size:48 final size:48
Alignment explanation
Indices: 96109961--96110144 Score: 219
Period size: 48 Copynumber: 3.8 Consensus size: 48
96109951 TAGGAGCTTT
* * * *
96109961 ATTGAGTTGGTTTTGGGCCATGATATTAGCACTTCGGGTGCGAGTTAC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTAGGGTGCGAGTTAC
* * * * *
96110009 TTTGATTTGGCTTCGAGCCATGATATTGGCACTTTA-TGTGTGAGCTT-C
1 ATTGATTTGGCTTCGGGCCATGATATTAGCAC-TTAGGGTGCGAG-TTAC
*
96110057 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTTGGGTGCGAGTTAC
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTAGGGTGCGAGTTAC
* * *
96110105 ATTGATTTGGCTTTGGGCCATGATATTGGCACCTAGGGTG
1 ATTGATTTGGCTTCGGGCCATGATATTAGCACTTAGGGTG
96110145 TGAGACTTCC
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
47 4 0.04
48 105 0.93
49 4 0.04
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (48 bp):
ATTGATTTGGCTTCGGGCCATGATATTAGCACTTAGGGTGCGAGTTAC
Found at i:96115075 original size:13 final size:13
Alignment explanation
Indices: 96115057--96115081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96115047 TTGTCGTGTT
96115057 ATTTAGTTAATTA
1 ATTTAGTTAATTA
96115070 ATTTAGTTAATT
1 ATTTAGTTAATT
96115082 TTAATTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
ATTTAGTTAATTA
Found at i:96115653 original size:21 final size:21
Alignment explanation
Indices: 96115611--96115654 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
96115601 CTTGAAAGGT
*
96115611 GGATATCGCGATACCCCAAAA
1 GGATATCGCGATACCACAAAA
* * *
96115632 GGATATTGTGATACCACTAAA
1 GGATATCGCGATACCACAAAA
96115653 GG
1 GG
96115655 GTCTCATTGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (21 bp):
GGATATCGCGATACCACAAAA
Found at i:96125198 original size:255 final size:255
Alignment explanation
Indices: 96124747--96125205 Score: 686
Period size: 255 Copynumber: 1.8 Consensus size: 255
96124737 GTGAATATTG
* * *
96124747 AGATTCTCTTATTTCGAATAAATAAAACATCACATCCAGCACGTAGGACACAACATTTCAAACCT
1 AGATTCTCTTATTTCAAAGAAATAAAACATCACATCCAACACGTAGGACACAACATTTCAAACCT
* * *
96124812 TCAATATCAAAATCATCTCATAATTCCCAGAATTTATGCATTGAAAATTTAAAAAGGATATTCGG
66 TCAATACCAAAATCATCTCATAATTCCCAGAACTCATGCATTGAAAATTTAAAAAGGATATTCGG
* * *
96124877 TCATTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAATTTCCAAACA
131 TCATTCGGTCAAACGACAAATCGAAACCCAACACGTAGGGCACAATTTCTCAAAATTTCCAAACA
96124942 CGAAATATTGCCTTGTTAAAAAAAAGTCTTGAATAAAAATGCAATAGTATGAAACGATTA
196 CGAAATATTGCCTTGTTAAAAAAAAGTCTTGAATAAAAATGCAATAGTATGAAACGATTA
* * * *
96125002 AGATTCTCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTCAAACCT
1 AGATTCTCTTATTTCAAAGAAATAAAACATCACATCCAACACGTAGGACACAACATTTCAAACCT
* *** ** * *
96125067 TCGATACCAAAATCATCTCATAATT-TTTGAAACTCATGTTTTGAAATTTTAAAAAGGATATTTG
66 TCAATACCAAAATCATCTCATAATTCCCAG-AACTCATGCATTGAAAATTTAAAAAGGATATTCG
** *
96125131 GTTGTTCGGTCAAACGACAAATCGAAACCCAACACGTAGGGCACAATTTCTCAAAATTTTCAAAC
130 GTCATTCGGTCAAACGACAAATCGAAACCCAACACGTAGGGCACAATTTCTCAAAATTTCCAAAC
96125196 ACGAAATATT
195 ACGAAATATT
96125206 ACTTTATTTT
Statistics
Matches: 179, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
254 1 0.01
255 178 0.99
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (255 bp):
AGATTCTCTTATTTCAAAGAAATAAAACATCACATCCAACACGTAGGACACAACATTTCAAACCT
TCAATACCAAAATCATCTCATAATTCCCAGAACTCATGCATTGAAAATTTAAAAAGGATATTCGG
TCATTCGGTCAAACGACAAATCGAAACCCAACACGTAGGGCACAATTTCTCAAAATTTCCAAACA
CGAAATATTGCCTTGTTAAAAAAAAGTCTTGAATAAAAATGCAATAGTATGAAACGATTA
Found at i:96125548 original size:26 final size:25
Alignment explanation
Indices: 96125493--96125555 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
96125483 ATAGGTATGG
*
96125493 AAAAACAAGTTTAGAATAGATACTAT
1 AAAAACGA-TTTAGAATAGATACTAT
96125519 AAAAACGATTTAGAATAGATACTAT
1 AAAAACGATTTAGAATAGATACTAT
96125544 AAAAACGATTTA
1 AAAAACGATTTA
96125556 AAGTAAATGG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 29 0.81
26 7 0.19
ACGTcount: A:0.54, C:0.08, G:0.11, T:0.27
Consensus pattern (25 bp):
AAAAACGATTTAGAATAGATACTAT
Found at i:96125569 original size:25 final size:25
Alignment explanation
Indices: 96125493--96125572 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
96125483 ATAGGTATGG
* *
96125493 AAAAACAAGTTTAGAATAGATACTAT
1 AAAAACGA-TTTAGAATAAATACTAT
*
96125519 AAAAACGATTTAGAATAGATACTAT
1 AAAAACGATTTAGAATAAATACTAT
**
96125544 AAAAACGATTTA-AAGTAAATGGTAT
1 AAAAACGATTTAGAA-TAAATACTAT
96125569 AAAA
1 AAAA
96125573 CAATTAGAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
24 2 0.04
25 40 0.82
26 7 0.14
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.26
Consensus pattern (25 bp):
AAAAACGATTTAGAATAAATACTAT
Found at i:96128022 original size:46 final size:45
Alignment explanation
Indices: 96128004--96128248 Score: 214
Period size: 46 Copynumber: 5.3 Consensus size: 45
96127994 TGACAAGTGG
* * *
96128004 AAAGTGATAAGTAATAGCTTCGCCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTAG-CTACACTTATCTGATCAAGTGAC
* *
96128050 AAAGTGATAAGTGATAGCTTCGGCTGCACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGAC
* * *
96128096 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGTGAC
96128148 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC---TGATC
1 AAAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGTGA-C
* * * **
96128192 -AAGAGACAAAGTGATAAG--TGGCTACACTTATCTGATCAAGAAAC
1 AAAGTGA-TAAGTGAT-AGCTTAGCTACACTTATCTGATCAAGTGAC
96128236 AAAGTGATAAGTG
1 AAAGTGATAAGTG
96128249 GCTACACTTA
Statistics
Matches: 167, Mismatches: 17, Indels: 32
0.77 0.08 0.15
Matches are distributed among these distances:
42 18 0.11
43 7 0.04
44 14 0.08
45 8 0.05
46 74 0.44
47 3 0.02
52 43 0.26
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (45 bp):
AAAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGTGAC
Found at i:96128107 original size:98 final size:98
Alignment explanation
Indices: 96127938--96128210 Score: 426
Period size: 98 Copynumber: 2.8 Consensus size: 98
96127928 TTTGAGTACT
*
96127938 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
96128003 GAAAGTGATAAGTAATAGCTTCGCCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
** *
96128036 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTGCACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
96128101 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
* *
96128134 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC---TGATCAAGA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGA-CAAGT
96128196 GACAAAGTGATAAGT
65 GA-AAAGTGATAAGT
96128211 GGCTACACTT
Statistics
Matches: 161, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
95 3 0.02
96 6 0.04
97 12 0.07
98 140 0.87
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGCCTATACTTA
Found at i:96128238 original size:37 final size:37
Alignment explanation
Indices: 96128184--96128320 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
96128174 CACTTATCTG
*
96128184 ATCTGATCAAGAGACAAAGTGATAAGTGGCTACACTT
1 ATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTT
96128221 ATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTT
1 ATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTT
*
96128258 ATCTGATCAAGAAACAAAGTGATAGGTGGCTACACTT
1 ATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTT
**
96128295 ATCTGATC-AGGGAC-AAGTGATAAGTG
1 ATCTGATCAAGAAACAAAGTGATAAGTG
96128321 ATCATACGTA
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.12
36 4 0.04
37 80 0.84
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (37 bp):
ATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTT
Found at i:96129648 original size:58 final size:59
Alignment explanation
Indices: 96129571--96129689 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
96129561 CATGTGAACA
96129571 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
96129630 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
96129688 TG
1 TG
96129690 ATTTCGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 55 0.92
59 5 0.08
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (59 bp):
TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:96129680 original size:28 final size:28
Alignment explanation
Indices: 96129590--96129680 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
96129580 GTGATTCCGT
96129590 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
96129618 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
96129647 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
96129676 GTAAG
1 GTAAG
96129681 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:96129703 original size:49 final size:49
Alignment explanation
Indices: 96129631--96129773 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
96129621 AGTGATATGT
* *
96129631 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* * *
96129680 GTGATATGTGATTTCGTGTAAGACCGTAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
96129729 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
96129774 AGAAAACGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 86 1.00
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:96132973 original size:46 final size:46
Alignment explanation
Indices: 96132955--96133157 Score: 214
Period size: 46 Copynumber: 4.3 Consensus size: 46
96132945 TGACAAGTGG
* * *
96132955 AAAGTGATAAGTAATAGCT-TCGCCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTATAG-CTACACTTATCTGATCAAGTGAC
* *
96133001 AAAGTGATAAGTGATAGCT-TCGGCTGCACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* * *
96133047 AAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTAT-AGCTACACTTATCTGATCAAGTGAC
* *
96133099 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
96133145 AAAGTGATAAGTG
1 AAAGTGATAAGTG
96133158 GCTACACTTA
Statistics
Matches: 140, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
46 95 0.68
47 2 0.01
52 43 0.31
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTATAGCTACACTTATCTGATCAAGTGAC
Done.