Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 306 of 318
Found at i:97022927 original size:3 final size:3
Alignment explanation
Indices: 97022919--97022955 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
97022909 TCAAATTGAA
97022919 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
97022956 GATGCATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:97031143 original size:7 final size:7
Alignment explanation
Indices: 97031104--97031142 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
97031094 ATGCATATAA
97031104 TTTTGAC
1 TTTTGAC
97031111 TTTTGAC
1 TTTTGAC
97031118 TTTTGAC
1 TTTTGAC
*
97031125 TTTTGCTC
1 TTTTG-AC
97031133 TTTTGA-
1 TTTTGAC
97031139 TTTT
1 TTTT
97031143 TTCTAAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
6 4 0.14
7 19 0.66
8 6 0.21
ACGTcount: A:0.10, C:0.13, G:0.13, T:0.64
Consensus pattern (7 bp):
TTTTGAC
Found at i:97031196 original size:15 final size:15
Alignment explanation
Indices: 97031178--97031228 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
97031168 TTTTATCCAG
97031178 TTATATTTTAATCAT
1 TTATATTTTAATCAT
*
97031193 TTAT-TTTTAA-AAT
1 TTATATTTTAATCAT
*
97031206 ATTACATTTTAATCAT
1 -TTATATTTTAATCAT
97031222 TTATATT
1 TTATATT
97031229 ATTACACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 2 0.07
14 9 0.31
15 16 0.55
16 2 0.07
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATTTTAATCAT
Found at i:97033528 original size:111 final size:111
Alignment explanation
Indices: 97033330--97033594 Score: 373
Period size: 111 Copynumber: 2.4 Consensus size: 111
97033320 AAACCTATAC
* * *
97033330 TGTGGGTACGGTAAATTCTAATA-TA-AAAA-TTAATTAATTATTTTCAATATCATTATTTTCAA
1 TGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTTCAATATAATTATTTTCAA
*
97033392 TAAATATAATTTTTATATGTGAAATATTTATTTTTTTCACC-TACAT
66 TAAATATAATTTTTATATGTCAAATATTTA-TTTTTTCACCGTACAT
97033438 TGTGGGTATGGTAAATTTTAATATTATAAAATTTGAATTAATTA-TTTCAAATATAATTATTTT-
1 TGTGGGTATGGTAAATTTTAATATTATAAAATTT-AATTAATTATTTTC-AATATAATTATTTTC
* *
97033501 TATAAATATAATTTTTATATGTCAAATATTTATTTTTTCCCCGTACAT
64 AATAAATATAATTTTTATATGTCAAATATTTATTTTTTCACCGTACAT
* * *
97033549 TGTGGGTATAGTAAATTTTAATATTATAAAA-TCAAATAATTATTTT
1 TGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTT
97033595 GAATGCCATT
Statistics
Matches: 141, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
108 21 0.15
109 10 0.07
110 17 0.12
111 71 0.50
112 22 0.16
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.48
Consensus pattern (111 bp):
TGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTTCAATATAATTATTTTCAA
TAAATATAATTTTTATATGTCAAATATTTATTTTTTCACCGTACAT
Found at i:97034763 original size:47 final size:46
Alignment explanation
Indices: 97034700--97034826 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
97034690 TCTTTACATA
* * * *
97034700 ATGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTC
1 ATGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCAC
* * *
97034746 ACTGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 A-TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCAC
*
97034793 ATCGATGCCATATCCCAGATATGGTCTTATACAG
1 AT-GATGCCATATCCCAGATATGGTCTTACACAG
97034827 AAATCACTTG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 66 0.94
48 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (46 bp):
ATGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCAC
Found at i:97034842 original size:7 final size:7
Alignment explanation
Indices: 97034830--97034858 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
97034820 TATACAGAAA
97034830 TCACTTG
1 TCACTTG
97034837 TCACTTG
1 TCACTTG
97034844 TCACTTG
1 TCACTTG
97034851 TCACTTG
1 TCACTTG
97034858 T
1 T
97034859 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:97034892 original size:31 final size:31
Alignment explanation
Indices: 97034857--97035065 Score: 251
Period size: 31 Copynumber: 6.7 Consensus size: 31
97034847 CTTGTCACTT
* *
97034857 GTAGCCAAAGCTACCACTATTCACTGACCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
**** *
97034888 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
97034919 GTAGCCAGAGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* *
97034950 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
97034981 GTAG-CAGAAACTACCACTTTTCACTGATCAG
1 GTAGCCA-AAGCTACCACTTTTCACTGATCAG
*
97035012 GTAGCTGAAA-CTACCACTTTTCACTGATCAG
1 GTAGC-CAAAGCTACCACTTTTCACTGATCAG
**
97035043 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCAAAGCTACCACTTTTCA
97035066 GTTGTCATTT
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
30 3 0.02
31 148 0.96
32 2 0.01
33 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:97034954 original size:62 final size:62
Alignment explanation
Indices: 97034864--97035065 Score: 289
Period size: 62 Copynumber: 3.3 Consensus size: 62
97034854 CTTGTAGCCA
* * ** *
97034864 AAGCTACCACTATTCACTGACCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTAGCCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAG-CAG
* * *
97034927 -AGCTACCATTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
* * *
97034988 AAACTACCACTTTTCACTGATCAGGTAGCTGAAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
97035050 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
97035066 GTTGTCATTT
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
61 3 0.02
62 120 0.98
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (62 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCAG
Found at i:97035016 original size:93 final size:93
Alignment explanation
Indices: 97034857--97035065 Score: 285
Period size: 93 Copynumber: 2.2 Consensus size: 93
97034847 CTTGTCACTT
* * * *** *
97034857 GTAGCCAAAGCTACCACTATTCACTGACCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTTTTCACTGACCAGGTAGCAGAAACTACCACTTTTCACTGATCAGGTA
* *
97034922 GCCAG-AGCTACCATTTTTCACTGATCAG
66 G-CAGAAACTACCACTTTTCACTGATCAG
**
97034950 GTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAGAAACTACCACTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTTTTCACTGACCAGGTAGCAGAAACTACCACTTTTCACTGATCAGGTA
*
97035015 GCTGAAACTACCACTTTTCACTGATCAG
66 GCAGAAACTACCACTTTTCACTGATCAG
*
97035043 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
97035066 GTTGTCATTT
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 2 0.02
93 100 0.98
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTTTTCACTGACCAGGTAGCAGAAACTACCACTTTTCACTGATCAGGTA
GCAGAAACTACCACTTTTCACTGATCAG
Found at i:97035149 original size:50 final size:50
Alignment explanation
Indices: 97035043--97035269 Score: 357
Period size: 50 Copynumber: 4.5 Consensus size: 50
97035033 CACTGATCAG
* * * *
97035043 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
97035094 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
97035144 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
97035194 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
97035244 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
97035270 GTTTCCATGG
Statistics
Matches: 163, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
50 139 0.85
51 24 0.15
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:97036097 original size:35 final size:35
Alignment explanation
Indices: 97036051--97036123 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
97036041 ATTTTCCAAA
97036051 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
1 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
97036086 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
1 GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
97036121 GTC
1 GTC
97036124 TCACAAAAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (35 bp):
GTCAGAACAGGGGAACTCAAAATCATTCTGACCTT
Found at i:97038722 original size:25 final size:26
Alignment explanation
Indices: 97038694--97038750 Score: 107
Period size: 25 Copynumber: 2.2 Consensus size: 26
97038684 AATTGAGACC
97038694 ATAATTTGTCACCAATACTTCTTCG-
1 ATAATTTGTCACCAATACTTCTTCGA
97038719 ATAATTTGTCACCAATACTTCTTCGA
1 ATAATTTGTCACCAATACTTCTTCGA
97038745 ATAATT
1 ATAATT
97038751 CTTTCTCTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.81
26 6 0.19
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (26 bp):
ATAATTTGTCACCAATACTTCTTCGA
Found at i:97039567 original size:52 final size:52
Alignment explanation
Indices: 97039489--97039591 Score: 206
Period size: 52 Copynumber: 2.0 Consensus size: 52
97039479 ACCCCTCTAA
97039489 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGT
1 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGT
97039541 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTG
1 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTG
97039592 GTTAGCCTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (52 bp):
TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGT
Found at i:97041051 original size:20 final size:20
Alignment explanation
Indices: 97041041--97041083 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
97041031 TTTGTAAGAG
*
97041041 ATTCAGTAATTCTGTAAAAA
1 ATTCAATAATTCTGTAAAAA
* *
97041061 ATTCAATAATTCTATAAGAA
1 ATTCAATAATTCTGTAAAAA
97041081 ATT
1 ATT
97041084 TAGTATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (20 bp):
ATTCAATAATTCTGTAAAAA
Found at i:97041576 original size:28 final size:27
Alignment explanation
Indices: 97041544--97041615 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
97041534 CTGAACCCCT
**
97041544 AACCCTAACCCTCAAACC-CAAAATCTTA
1 AACCCTAACCCT-AAACCTCAAAA-CCAA
97041572 AACCCTAAACCCTAAACCTCAAAACCAA
1 AACCCT-AACCCTAAACCTCAAAACCAA
*
97041600 AACCCTAACCTTAAAC
1 AACCCTAACCCTAAAC
97041616 ATTGATTTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 9 0.23
28 19 0.49
29 11 0.28
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (27 bp):
AACCCTAACCCTAAACCTCAAAACCAA
Found at i:97041582 original size:7 final size:7
Alignment explanation
Indices: 97041540--97041607 Score: 52
Period size: 7 Copynumber: 9.9 Consensus size: 7
97041530 TACCCTGAAC
97041540 CCCT-AA
1 CCCTAAA
97041546 CCCT-AA
1 CCCTAAA
97041552 CCCTCAAA
1 CCCT-AAA
*
97041560 CCCAAAA
1 CCCTAAA
* *
97041567 TCTTAAA
1 CCCTAAA
97041574 CCCTAAA
1 CCCTAAA
97041581 CCCTAAA
1 CCCTAAA
97041588 -CCTCAAA
1 CCCT-AAA
* *
97041595 ACCAAAA
1 CCCTAAA
97041602 CCCTAA
1 CCCTAA
97041608 CCTTAAACAT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
6 13 0.27
7 29 0.59
8 7 0.14
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
CCCTAAA
Found at i:97047253 original size:93 final size:93
Alignment explanation
Indices: 97047139--97047309 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
97047129 GCCCATAAGT
****
97047139 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97047204 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
97047232 GAACTCGGACTCAACTGAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
97047297 CGAGTTTGGATGC
66 CGAGCTCGGATGC
97047310 TCAATCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:97047325 original size:46 final size:46
Alignment explanation
Indices: 97047131--97047311 Score: 179
Period size: 46 Copynumber: 3.9 Consensus size: 46
97047121 TGTAACCCGC
* * *
97047131 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
*
97047177 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CAT
* * * * * ***
97047227 -C-TCA-CGAACTCGGACTCAACTGAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
97047270 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC
97047312 AATCATCCTA
Statistics
Matches: 107, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.63
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:97047897 original size:20 final size:18
Alignment explanation
Indices: 97047863--97047899 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
97047853 GCAACTCATA
97047863 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
97047881 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
97047900 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:97051149 original size:86 final size:86
Alignment explanation
Indices: 97051004--97051262 Score: 464
Period size: 86 Copynumber: 3.0 Consensus size: 86
97050994 AATACGCCTA
* *
97051004 AAAAAAATGACCATCCATGTGTGGCAGGAGCTATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
97051069 ATTTCAATGCAACATTCTTCT
66 ATTTCAATGCAACATTCTTCT
*
97051090 AAAAAAATGACCATCCACGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
*
97051155 ATTTCAATGCACCATTCTTCT
66 ATTTCAATGCAACATTCTTCT
* *
97051176 AAAAAAATGACCATCCATGTGTGGTAGGAACAATCCACCATGGTTGCCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
97051241 ATTTCAATGCAACATTCTTCT
66 ATTTCAATGCAACATTCTTCT
97051262 A
1 A
97051263 TTTTCTCATC
Statistics
Matches: 165, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 165 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (86 bp):
AAAAAAATGACCATCCATGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
ATTTCAATGCAACATTCTTCT
Found at i:97051519 original size:9 final size:9
Alignment explanation
Indices: 97051501--97051535 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
97051491 TTTGTAGATG
97051501 AAAT-AAAA
1 AAATAAAAA
97051509 AAATAAAAA
1 AAATAAAAA
97051518 AAATAACAAA
1 AAATAA-AAA
97051528 AAATAAAA
1 AAATAAAA
97051536 TATTTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.16
9 12 0.48
10 9 0.36
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (9 bp):
AAATAAAAA
Found at i:97051846 original size:30 final size:32
Alignment explanation
Indices: 97051788--97051847 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
97051778 AGGTATAACG
*
97051788 ACTTAAAAAGAGAATTAAATGCACAAAATATA
1 ACTTAAAAAGAGAATTAAATGAACAAAATATA
*
97051820 ACTTAAAAAGAGAA-TGAA-GAACAAAATA
1 ACTTAAAAAGAGAATTAAATGAACAAAATA
97051848 AATAGTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 3 0.12
32 14 0.54
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.18
Consensus pattern (32 bp):
ACTTAAAAAGAGAATTAAATGAACAAAATATA
Found at i:97054784 original size:2 final size:2
Alignment explanation
Indices: 97054777--97054809 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
97054767 ACTAATTATC
97054777 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
97054810 CCGATCTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:97056949 original size:27 final size:27
Alignment explanation
Indices: 97056901--97056980 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
97056891 GCGAGGCTGC
* * *
97056901 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
97056928 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
97056954 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
97056981 CAAATAATCA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:97056993 original size:70 final size:70
Alignment explanation
Indices: 97056918--97057048 Score: 212
Period size: 70 Copynumber: 1.9 Consensus size: 70
97056908 TGTGACAAAG
97056918 TCACCAGATACAGATAT-TGTGGCAGAGCCACCAGAACAGAT-ATATGTGGCAGAGCCACCAGAT
1 TCACCAGA-ACAGATATATGTGGCAGAGCCACCAGAACAGATAAT-TGTGGCAGAGCCACCAGAT
97056981 CAAATAA
64 CAAATAA
* *
97056988 TCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 TCACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATAATTGTGGCAGAGCCACCAG
97057049 GACACTTCCT
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
69 8 0.14
70 47 0.82
71 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (70 bp):
TCACCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATAATTGTGGCAGAGCCACCAGATCA
AATAA
Found at i:97057007 original size:43 final size:43
Alignment explanation
Indices: 97056946--97057031 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
97056936 GTGGCAGAGC
97056946 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAAT
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAAT
*
97056989 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAAT
97057032 TGTGGCATAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (43 bp):
CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAAT
Found at i:97057019 original size:27 final size:27
Alignment explanation
Indices: 97056989--97057048 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
97056979 ATCAAATAAT
97056989 CACCAGAACAGAT-ATATGTGGCAGAGC
1 CACCAGAACAGATAAT-TGTGGCAGAGC
* *
97057016 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAATTGTGGCAGAGC
97057043 CACCAG
1 CACCAG
97057049 GACACTTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATAATTGTGGCAGAGC
Found at i:97058699 original size:26 final size:26
Alignment explanation
Indices: 97058668--97058775 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
97058658 TGAAATGCCC
* *
97058668 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAATATTTACCTAACCCATT
97058694 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
*
97058720 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAACCCATT
97058746 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
97058772 ATCA
1 ATCA
97058776 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAACCCATT
Found at i:97061551 original size:65 final size:64
Alignment explanation
Indices: 97061437--97061612 Score: 280
Period size: 65 Copynumber: 2.7 Consensus size: 64
97061427 AATTAATTAA
*
97061437 ATTAGGGTTAATTAATTAAATTAACTATTAATTGTAAAAAATCAATTAAATTAGGGTTTAGGGTT
1 ATTAAGGTTAATTAATTAAATTAACTATTAATT-TAAAAAATCAATTAAATTAGGGTTTAGGGTT
* * * *
97061502 TTTATGGTTTATTAATTAAATTAATTATTAATTTAAAAGAATCAATTAAATTAGGGTTTAGGGTT
1 ATTAAGGTTAATTAATTAAATTAACTATTAATTTAAAA-AATCAATTAAATTAGGGTTTAGGGTT
97061567 ATTAAGGTTAATTAATTAAATTAACTATTAATTTTAAAAAATCAAT
1 ATTAAGGTTAATTAATTAAATTAACTATTAA-TTTAAAAAATCAAT
97061613 ATATAAATTT
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
64 5 0.05
65 89 0.88
66 7 0.07
ACGTcount: A:0.43, C:0.03, G:0.12, T:0.43
Consensus pattern (64 bp):
ATTAAGGTTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAGGGTT
Found at i:97061856 original size:126 final size:127
Alignment explanation
Indices: 97061631--97061898 Score: 362
Period size: 126 Copynumber: 2.1 Consensus size: 127
97061621 TTTTTTATTT
* * * *
97061631 TTTTGCTGCAATAGTATTAGAGAAAATAATTTTGAGAAGACGTTTCTGAATAAATAGTGTCAAAA
1 TTTTGCTACAATAGTATTAGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAA
97061696 ACACTTCAAGCAGGATGCACTGTCAACAAAATTACGG-AAAAAAGCTCCCACATAGACT-CTC
66 ACACTTCAAGCAGGATGCACTGTCAACAAAATTACGGAAAAAAAGCTCCCACATAGA-TGCTC
* *
97061757 TTTTGCTACATTAGTATCT-GAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCCAA
1 TTTTGCTACAATAGTAT-TAGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAA
* * * ** * * *
97061821 AACGCTTTAAGTAGGATGCACTGTCAGTAAAATTACGGAAAAAAAGCTCTCACGTGGATGCTC
65 AACACTTCAAGCAGGATGCACTGTCAACAAAATTACGGAAAAAAAGCTCCCACATAGATGCTC
*
97061884 TTTTGCTACAGTAGT
1 TTTTGCTACAATAGT
97061899 TACTTTTTGA
Statistics
Matches: 124, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
126 90 0.73
127 34 0.27
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (127 bp):
TTTTGCTACAATAGTATTAGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAA
ACACTTCAAGCAGGATGCACTGTCAACAAAATTACGGAAAAAAAGCTCCCACATAGATGCTC
Found at i:97065593 original size:30 final size:30
Alignment explanation
Indices: 97065559--97065615 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
97065549 TGTTGGGCCT
*
97065559 GGTGACTGTGTGGGCGCTGTTGATGGGTCC
1 GGTGACTATGTGGGCGCTGTTGATGGGTCC
97065589 GGTGACTATGTGGGCGCTGTTGATGGG
1 GGTGACTATGTGGGCGCTGTTGATGGG
97065616 CCCGCATCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.09, C:0.14, G:0.47, T:0.30
Consensus pattern (30 bp):
GGTGACTATGTGGGCGCTGTTGATGGGTCC
Found at i:97067103 original size:24 final size:24
Alignment explanation
Indices: 97067076--97067126 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
97067066 ACTGTTATAA
*
97067076 AAAATT-ATAAAATAAAAAATAATT
1 AAAATTGAAAAAATAAAAAA-AATT
*
97067100 AAAATTGAAAAAATGAAAAAAATT
1 AAAATTGAAAAAATAAAAAAAATT
97067124 AAA
1 AAA
97067127 TAGTATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAATTGAAAAAATAAAAAAAATT
Found at i:97069166 original size:27 final size:25
Alignment explanation
Indices: 97069128--97069190 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
97069118 TATATCAAAT
* *
97069128 AATAAAGAATATATAGAAATGTTTTAA
1 AATAAATAATATAT-GAAA-GGTTTAA
*
97069155 AATAAATAATATGTGAAAGGTTTAA
1 AATAAATAATATATGAAAGGTTTAA
97069180 AATAAATAATA
1 AATAAATAATA
97069191 AAAATGAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 17 0.52
26 4 0.12
27 12 0.36
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (25 bp):
AATAAATAATATATGAAAGGTTTAA
Found at i:97072492 original size:23 final size:23
Alignment explanation
Indices: 97072466--97072510 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
97072456 ATCATGGTTG
97072466 AATTTGGATGATAATCATCTCTA
1 AATTTGGATGATAATCATCTCTA
97072489 AATTTGGATGATAATCATCTCT
1 AATTTGGATGATAATCATCTCT
97072511 TCTAGATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (23 bp):
AATTTGGATGATAATCATCTCTA
Found at i:97072806 original size:18 final size:19
Alignment explanation
Indices: 97072783--97072825 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
97072773 TAGGCAAGCC
97072783 TTTTG-AAGTAGTATTGTA
1 TTTTGTAAGTAGTATTGTA
97072801 TTTTGATTAAGTAGTATTGTA
1 TTTTG--TAAGTAGTATTGTA
97072822 TTTT
1 TTTT
97072826 TGGATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
21 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (19 bp):
TTTTGTAAGTAGTATTGTA
Found at i:97075162 original size:16 final size:16
Alignment explanation
Indices: 97075141--97075212 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 16
97075131 TGAATTACTG
97075141 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
*
97075157 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
* **
97075173 ATTACAGCTCTATTAA
1 ATTACAGTTCTATTCC
*
97075189 ATTACAGTCCTATTCC
1 ATTACAGTTCTATTCC
97075205 ATTACAGT
1 ATTACAGT
97075213 GAACCAAACG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:97083071 original size:159 final size:159
Alignment explanation
Indices: 97082769--97083083 Score: 393
Period size: 159 Copynumber: 2.0 Consensus size: 159
97082759 GGTATAAACT
* *
97082769 CCAACAAATTCAATTAATGACTCTAATCAACCCTCCAAGAAATAATCCTTATAAAATTGAAGGAT
1 CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAGAAATAATCCTTAGAAAATTGAAGGAT
* * * * ** *
97082834 TAAAAATGAATTCTCACGACTCATTGAAAAAAATTGAGAAGAAAATTGTTTCTAAAAATCATAAG
66 AAAAAATGAATTCCCACGACTCATTGAAAAAAATTGAGAAAAAAACTACTTCTAAAAATCACAAG
* *
97082899 AAAGCAATTTTGCACAAAGAAACTAAATC
131 AAAGAAATCTTGCACAAAGAAACTAAATC
* * * *
97082928 CCAACAAACTCAATTACTGACTCTAATCAACCCTCC-AGAAAATAATCCTTGGCAAATTGAAGGG
1 CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAG-AAATAATCCTTAGAAAATTGAAGGA
* * * *
97082992 TAAAAAATGAATTCCCATGA-TCCTTTAAGGAAAATCT-AGAAAAAAACTACTTCTAAAAATCAC
65 TAAAAAATGAATTCCCACGACTCATTGAA-AAAAAT-TGAGAAAAAAACTACTTCTAAAAATCAC
* *
97083055 AAGGAAGAAATCTTGCACAAAGAATCTAA
128 AAGAAAGAAATCTTGCACAAAGAAACTAA
97083084 CTCTTATAGT
Statistics
Matches: 132, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
158 8 0.06
159 123 0.93
160 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.24
Consensus pattern (159 bp):
CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAGAAATAATCCTTAGAAAATTGAAGGAT
AAAAAATGAATTCCCACGACTCATTGAAAAAAATTGAGAAAAAAACTACTTCTAAAAATCACAAG
AAAGAAATCTTGCACAAAGAAACTAAATC
Found at i:97085284 original size:103 final size:103
Alignment explanation
Indices: 97085097--97085285 Score: 225
Period size: 103 Copynumber: 1.8 Consensus size: 103
97085087 ACTAACCCTA
* * * * * *
97085097 AGTCATAGTTAGATTGATATATACATTGTTTCCAATGTAAAAGGACGTGGGTTCAAGTGCACTGC
1 AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACATAGGCTCAAGTACACTGC
*
97085162 AGCGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
66 AACGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
* * * * * * *
97085200 AGTCATAGTTCGATTCATATGGGCATTGTTTCCAATGTGAAAGTACATAGGCTCAAGTATACTGT
1 AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACATAGGCTCAAGTACACTGC
* * *
97085265 AATGCATTATTCTCTTATTTA
66 AACGCATTATCCTCCTATTTA
97085286 TGAATTCGGA
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
103 69 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (103 bp):
AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACATAGGCTCAAGTACACTGC
AACGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
Found at i:97086544 original size:278 final size:277
Alignment explanation
Indices: 97086001--97086546 Score: 1065
Period size: 278 Copynumber: 2.0 Consensus size: 277
97085991 GTGGTATCTG
97086001 TATTTTGAAAATGTCTAATATGTAATTAAATTATCAATTTGTGTATTATTATGGTACATGATGTT
1 TATTTTGAAAATGTCTAATATGTAATTAAATTATCAATTTGTGTATTATTATGGTACATGATGTT
97086066 AACAAGGTTAGCAAATGCTAAACTAACTAATGAAAATTTGATACATTAATTGTTGCATTAAAAAT
66 AACAAGGTTAGCAAATGCTAAACTAACTAATGAAAATTTGATACATTAATTGTTGCATTAAAAAT
*
97086131 TTTTTTTATAAAAAAATTGAAGCTTTATCAATCAAGGATGCGTAGCTAGCTGTTGTATGAGAACT
131 TTTTTTTATAAAAAAATTGAAGCTTTATCAATCAAGGATGCGTAGCTAGCAGTTGTATGAGAACT
97086196 TTCTGATTGAAGCAGATCGCCAACTTGCAAGGATGGTTGATCCTTTCTAGGAAAAATGGGAGGTT
196 TTCTGATTGAAGCAGATCGCCAACTTGCAAGGATGGTTGATCCTTTCTAGGAAAAATGGGAGGTT
97086261 GACTAGAAAATGTCTAA
261 GACTAGAAAATGTCTAA
97086278 TATTTTGAAAATGTCTAATATGTAATTAAATTATCAATTTGTGTATTATTATGGTACATGATGTT
1 TATTTTGAAAATGTCTAATATGTAATTAAATTATCAATTTGTGTATTATTATGGTACATGATGTT
*
97086343 AACAAGGTTAGCAAATGCTAAACTAACTAATGAAAATTTGATACATTAATTGTTGCATTAAAATT
66 AACAAGGTTAGCAAATGCTAAACTAACTAATGAAAATTTGATACATTAATTGTTGCATTAAAA-A
97086408 TTTTTTTTATAAAAAAATTGAAGCTTTATCAATCAAGGATGCGTAGCTAGCAGTTGTATGAGAAC
130 TTTTTTTTATAAAAAAATTGAAGCTTTATCAATCAAGGATGCGTAGCTAGCAGTTGTATGAGAAC
97086473 TTTCTGATTGAAGCAGATCGCCAACTTGCAAGGATGGTTGATCCTTTCTAGGAAAAATGGGAGGT
195 TTTCTGATTGAAGCAGATCGCCAACTTGCAAGGATGGTTGATCCTTTCTAGGAAAAATGGGAGGT
97086538 TGACTAGAA
260 TGACTAGAA
97086547 CCAGGCCTTC
Statistics
Matches: 266, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
277 128 0.48
278 138 0.52
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (277 bp):
TATTTTGAAAATGTCTAATATGTAATTAAATTATCAATTTGTGTATTATTATGGTACATGATGTT
AACAAGGTTAGCAAATGCTAAACTAACTAATGAAAATTTGATACATTAATTGTTGCATTAAAAAT
TTTTTTTATAAAAAAATTGAAGCTTTATCAATCAAGGATGCGTAGCTAGCAGTTGTATGAGAACT
TTCTGATTGAAGCAGATCGCCAACTTGCAAGGATGGTTGATCCTTTCTAGGAAAAATGGGAGGTT
GACTAGAAAATGTCTAA
Found at i:97087666 original size:6 final size:6
Alignment explanation
Indices: 97087657--97087695 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
97087647 AAGTTCACCG
*
97087657 CCATCG CCATCA CCATCA CCATCA CCATCA CCATCA CCA
1 CCATCA CCATCA CCATCA CCATCA CCATCA CCATCA CCA
97087696 CCCACACCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.31, C:0.51, G:0.03, T:0.15
Consensus pattern (6 bp):
CCATCA
Found at i:97088143 original size:12 final size:12
Alignment explanation
Indices: 97088128--97088180 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
97088118 TTTAGGCTCA
*
97088128 GGTTCTGGATAT
1 GGTTCAGGATAT
*
97088140 GGTTCAGGGTAT
1 GGTTCAGGATAT
*
97088152 GGTTCCGGA-AGT
1 GGTTCAGGATA-T
*
97088164 GGCTCAGGATAT
1 GGTTCAGGATAT
97088176 GGTTC
1 GGTTC
97088181 GGGAGCTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.17, C:0.13, G:0.38, T:0.32
Consensus pattern (12 bp):
GGTTCAGGATAT
Found at i:97088224 original size:6 final size:6
Alignment explanation
Indices: 97088200--97088249 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
97088190 TGGTAGTGGA
* * * *
97088200 GGAGGT GGAGGG GGTGGT GGGGGT GGTGGT GGAGGT GGAGGT GGAGGT
1 GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT
97088248 GG
1 GG
97088250 TGGCAGCTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.10, C:0.00, G:0.72, T:0.18
Consensus pattern (6 bp):
GGAGGT
Found at i:97088227 original size:12 final size:12
Alignment explanation
Indices: 97088203--97088252 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
97088193 TAGTGGAGGA
*
97088203 GGTGGAGGGGGT
1 GGTGGAGGTGGT
*
97088215 GGTGGGGGTGGT
1 GGTGGAGGTGGT
*
97088227 GGTGGAGGTGGA
1 GGTGGAGGTGGT
97088239 GGTGGAGGTGGT
1 GGTGGAGGTGGT
97088251 GG
1 GG
97088253 CAGCTCCGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.08, C:0.00, G:0.72, T:0.20
Consensus pattern (12 bp):
GGTGGAGGTGGT
Found at i:97088286 original size:12 final size:12
Alignment explanation
Indices: 97088271--97088315 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
97088261 GATCTGGTAG
97088271 TGGGTCTGGATA
1 TGGGTCTGGATA
*
97088283 TGGGTCTGGATC
1 TGGGTCTGGATA
* * *
97088295 TGGATCAGGGTA
1 TGGGTCTGGATA
97088307 TGGGTCTGG
1 TGGGTCTGG
97088316 TGGTGGGATA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.13, C:0.11, G:0.44, T:0.31
Consensus pattern (12 bp):
TGGGTCTGGATA
Found at i:97088338 original size:3 final size:3
Alignment explanation
Indices: 97088332--97088366 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
97088322 GATAGGAGGA
*
97088332 GGT GGT GGT GGT GGT GGT GGT GGT GGA GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
97088367 CAATGGGGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.03, C:0.00, G:0.69, T:0.29
Consensus pattern (3 bp):
GGT
Found at i:97088458 original size:24 final size:24
Alignment explanation
Indices: 97088431--97088488 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
97088421 ATACGGAAGT
*
97088431 GGTGGTGGTAGAGGAGGAGGAGGA
1 GGTGGTGGCAGAGGAGGAGGAGGA
* * *
97088455 GGTGGTGGCAGTGGAGGTGGAGGT
1 GGTGGTGGCAGAGGAGGAGGAGGA
*
97088479 GGTGGAGGCA
1 GGTGGTGGCA
97088489 ATGGTTCAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.19, C:0.03, G:0.62, T:0.16
Consensus pattern (24 bp):
GGTGGTGGCAGAGGAGGAGGAGGA
Found at i:97088513 original size:18 final size:18
Alignment explanation
Indices: 97088488--97088540 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
97088478 TGGTGGAGGC
97088488 AATGGTTCAGGTTATGGA
1 AATGGTTCAGGTTATGGA
* *
97088506 AGTGGTTCAGGATATGGA
1 AATGGTTCAGGTTATGGA
*
97088524 AATGGGTCAGGTTATGG
1 AATGGTTCAGGTTATGG
97088541 TAGTAGTGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.26, C:0.06, G:0.38, T:0.30
Consensus pattern (18 bp):
AATGGTTCAGGTTATGGA
Found at i:97093509 original size:12 final size:12
Alignment explanation
Indices: 97093468--97093519 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
97093458 GGGATAGGAA
*
97093468 GTGGTGGAGGAG
1 GTGGTGGAGGCG
* *
97093480 GTGGTGGTGGCA
1 GTGGTGGAGGCG
* *
97093492 GCGGTGGCGGCG
1 GTGGTGGAGGCG
97093504 GTGGTGGAGGCG
1 GTGGTGGAGGCG
97093516 GTGG
1 GTGG
97093520 CAACGGAGGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.08, C:0.10, G:0.65, T:0.17
Consensus pattern (12 bp):
GTGGTGGAGGCG
Found at i:97093530 original size:21 final size:21
Alignment explanation
Indices: 97093492--97093531 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97093482 GGTGGTGGCA
** *
97093492 GCGGTGGCGGCGGTGGTGGAG
1 GCGGTGGCAACGGAGGTGGAG
97093513 GCGGTGGCAACGGAGGTGG
1 GCGGTGGCAACGGAGGTGG
97093532 GTCGGGATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.15, G:0.62, T:0.12
Consensus pattern (21 bp):
GCGGTGGCAACGGAGGTGGAG
Found at i:97093551 original size:18 final size:18
Alignment explanation
Indices: 97093528--97093567 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
97093518 GGCAACGGAG
97093528 GTGGGTCGGGATATGGAA
1 GTGGGTCGGGATATGGAA
*
97093546 GTGGGTCTGGATATGGAA
1 GTGGGTCGGGATATGGAA
97093564 GTGG
1 GTGG
97093568 AGGTGGTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.05, G:0.50, T:0.25
Consensus pattern (18 bp):
GTGGGTCGGGATATGGAA
Found at i:97093644 original size:18 final size:17
Alignment explanation
Indices: 97093590--97093645 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 17
97093580 TAGAGGAGGA
97093590 GGAGGAGGTGGTGGCA-
1 GGAGGAGGTGGTGGCAT
*
97093606 -GTGGAGGTGGTGG--T
1 GGAGGAGGTGGTGGCAT
*
97093620 GGCGGAGGTGGTGGTCAT
1 GGAGGAGGTGGTGG-CAT
97093638 GGAGGAGG
1 GGAGGAGG
97093646 GTCAGGATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 24 0.75
18 8 0.25
ACGTcount: A:0.14, C:0.05, G:0.62, T:0.18
Consensus pattern (17 bp):
GGAGGAGGTGGTGGCAT
Found at i:97095290 original size:22 final size:20
Alignment explanation
Indices: 97095253--97095321 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 20
97095243 GATTAATATG
97095253 TAAATTATTGAAATTAATTTA
1 TAAATTATT-AAATTAATTTA
97095274 TAATACTTATTAAATTAATTTAA
1 TAA-A-TTATTAAATTAATTT-A
97095297 TAAATTATGTAAATT-ATATTA
1 TAAATTAT-TAAATTAAT-TTA
97095318 TAAA
1 TAAA
97095322 CTAAAAGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
21 14 0.33
22 20 0.47
23 9 0.21
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (20 bp):
TAAATTATTAAATTAATTTA
Found at i:97096946 original size:3 final size:3
Alignment explanation
Indices: 97096938--97097106 Score: 114
Period size: 3 Copynumber: 57.3 Consensus size: 3
97096928 TTAATTAATT
* * * * *
97096938 TTA TTA TTA TTT TTA ATA TCA TTTA TTA TCA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * *
97096984 CTA TTA TTA ATA TTA TTA TTT TTA CCA TTA CTA TTTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * **
97097030 TTG TTA CTA CTA TT- TTA TT- TTA TT- TT- TTA CCA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
97097073 TTA TTA CTA TTA CTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
97097107 CATTTCTTAT
Statistics
Matches: 126, Mismatches: 34, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
2 10 0.08
3 112 0.89
4 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:97096951 original size:12 final size:12
Alignment explanation
Indices: 97096931--97097150 Score: 74
Period size: 12 Copynumber: 17.2 Consensus size: 12
97096921 TATCAAATTA
*
97096931 ATTAATTTTATT
1 ATTATTTTTATT
*
97096943 ATTATTTTTAAT
1 ATTATTTTTATT
*
97096955 ATCATTTATTATCAT
1 ATTATTT-TTAT--T
*
97096970 CATTATTATTATT
1 -ATTATTTTTATT
*
97096983 ACTATTATTAATATT
1 ATTATT-TT--TATT
97096998 ATTATTTTTACCATT
1 ATTATTTTT---ATT
* *
97097013 ACTATTTATTATC
1 ATTATTT-TTATT
* *
97097026 ATTATTGTTACT
1 ATTATTTTTATT
*
97097038 ACTA-TTTTATT
1 ATTATTTTTATT
97097049 -TTATTTTTTACCATT
1 ATTA-TTTTT---ATT
97097064 ATTATTATTTTATT
1 ATTA-T-TTTTATT
* **
97097078 ACTATTACTATT
1 ATTATTTTTATT
*
97097090 ATTATTATTATT
1 ATTATTTTTATT
* *
97097102 ATTATCATTTCTT
1 ATTAT-TTTTATT
97097115 A-T-TTTTTATT
1 ATTATTTTTATT
*
97097125 AAATATTTTTATT
1 -ATTATTTTTATT
97097138 -TTATTTTT-TT
1 ATTATTTTTATT
97097148 ATT
1 ATT
97097151 TGTTTAAACT
Statistics
Matches: 155, Mismatches: 30, Indels: 47
0.67 0.13 0.20
Matches are distributed among these distances:
10 9 0.06
11 16 0.10
12 54 0.35
13 26 0.17
14 8 0.05
15 26 0.17
16 12 0.08
17 4 0.03
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (12 bp):
ATTATTTTTATT
Found at i:97098244 original size:11 final size:11
Alignment explanation
Indices: 97098228--97098262 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
97098218 CCCTTCCCCC
97098228 CTCCCTTCTCT
1 CTCCCTTCTCT
97098239 CTCCCTTCTCT
1 CTCCCTTCTCT
97098250 CTTCCC-TCTCT
1 C-TCCCTTCTCT
97098261 CT
1 CT
97098263 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:97098750 original size:3 final size:3
Alignment explanation
Indices: 97098742--97098766 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97098732 TGTATTTCAA
97098742 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
97098767 GTACATTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:97098856 original size:123 final size:126
Alignment explanation
Indices: 97098729--97098975 Score: 326
Period size: 123 Copynumber: 2.0 Consensus size: 126
97098719 ATATTACATT
* *
97098729 TTTTGTATTTCAATATTATTATTATTATTATTATTAT-TGT-ACATTAGTGTATA-TCTTCATGT
1 TTTTGTATTTCAATATTATTATTATTATTATTATTATAT-TAACATTACTATATATTCTT-AT-T
* * *
97098791 -ATGTATATATATATGTAGTAATGTTTTT-ATTACTTTATTTTAATAT-TTTTATTATAATAGC
63 AATGTATATATACATATAGTAATGTTTTTAATGACTTTATTTTAATATATTTTATTATAATAGC
*
97098852 TTTTGTATTTCAATATTATTATTATTTTTATTATTATCATTAACATTACTATATATTCTTATTAG
1 TTTTGTATTTCAATATTATTATTATTATTATTATTAT-ATTAACATTACTATATATTCTTATTA-
* *
97098917 ATGTATATATACATATATTACTGTTTTTAATGACTTTATTTTAATATCATTTTATTATA
64 ATGTATATATACATATAGTAATGTTTTTAATGACTTTATTTTAATAT-ATTTTATTATA
97098976 TTTACTTTTT
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
123 36 0.34
124 2 0.02
125 14 0.13
126 28 0.26
127 17 0.16
129 10 0.09
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (126 bp):
TTTTGTATTTCAATATTATTATTATTATTATTATTATATTAACATTACTATATATTCTTATTAAT
GTATATATACATATAGTAATGTTTTTAATGACTTTATTTTAATATATTTTATTATAATAGC
Found at i:97103177 original size:12 final size:12
Alignment explanation
Indices: 97103150--97103193 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
97103140 GTTAGGAAAG
97103150 GGAGGTGGT-G-
1 GGAGGTGGTGGC
97103160 GG-GGTGGTGGC
1 GGAGGTGGTGGC
*
97103171 GGAGGTGGAGGC
1 GGAGGTGGTGGC
97103183 GGAGGTGGTGG
1 GGAGGTGGTGG
97103194 AGGCTCTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 6 0.21
10 3 0.10
11 2 0.07
12 18 0.62
ACGTcount: A:0.09, C:0.05, G:0.70, T:0.16
Consensus pattern (12 bp):
GGAGGTGGTGGC
Found at i:97103322 original size:18 final size:18
Alignment explanation
Indices: 97103271--97103316 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
97103261 GGGATAGGAA
*
97103271 GTGGTGGAGGAGGTGGTG
1 GTGGTGGAGGAGGTGGAG
* *
97103289 GTGGTAGCGGAGGTGGAG
1 GTGGTGGAGGAGGTGGAG
97103307 GTGGTGGAGG
1 GTGGTGGAGG
97103317 CAGTGGCAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.02, G:0.65, T:0.20
Consensus pattern (18 bp):
GTGGTGGAGGAGGTGGAG
Found at i:97103375 original size:18 final size:18
Alignment explanation
Indices: 97103354--97103388 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97103344 TGGGTCTGGA
97103354 TCTGGATATGGAAGTGGG
1 TCTGGATATGGAAGTGGG
97103372 TCTGGATATGGAAGTGG
1 TCTGGATATGGAAGTGG
97103389 AGGTGGTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.43, T:0.29
Consensus pattern (18 bp):
TCTGGATATGGAAGTGGG
Found at i:97103432 original size:18 final size:18
Alignment explanation
Indices: 97103411--97103472 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
97103401 TAGAGGTGGA
97103411 GGAGGAGGTGGTGGCAGT
1 GGAGGAGGTGGTGGCAGT
* * *
97103429 GGAGGTGGCGGTGGCGGT
1 GGAGGAGGTGGTGGCAGT
*
97103447 GGCGGAGGTGGTGGTCA-T
1 GGAGGAGGTGGTGG-CAGT
97103465 GGAGGAGG
1 GGAGGAGG
97103473 GTCGGGATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 34 0.97
19 1 0.03
ACGTcount: A:0.13, C:0.08, G:0.63, T:0.16
Consensus pattern (18 bp):
GGAGGAGGTGGTGGCAGT
Found at i:97103459 original size:12 final size:12
Alignment explanation
Indices: 97103403--97103460 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
97103393 GGTAGAGGTA
* *
97103403 GAGGTGGAGGAG
1 GAGGTGGTGGCG
*
97103415 GAGGTGGTGGCA
1 GAGGTGGTGGCG
* *
97103427 GTGGAGGTGGCG
1 GAGGTGGTGGCG
* *
97103439 GTGGCGGTGGCG
1 GAGGTGGTGGCG
97103451 GAGGTGGTGG
1 GAGGTGGTGG
97103461 TCATGGAGGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.12, C:0.07, G:0.66, T:0.16
Consensus pattern (12 bp):
GAGGTGGTGGCG
Found at i:97103549 original size:21 final size:21
Alignment explanation
Indices: 97103525--97103571 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
97103515 GAGTGGAAAT
97103525 GGAGGTGGTAG-AGGTGGAGGA
1 GGAGGTGGTAGCA-GTGGAGGA
* *
97103546 GGAGGTGGTGGCAGTGGAGGT
1 GGAGGTGGTAGCAGTGGAGGA
97103567 GGAGG
1 GGAGG
97103572 AGGCGGAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.19, C:0.02, G:0.64, T:0.15
Consensus pattern (21 bp):
GGAGGTGGTAGCAGTGGAGGA
Found at i:97107099 original size:26 final size:26
Alignment explanation
Indices: 97107070--97107130 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
97107060 CTCTTCATGC
*
97107070 ATTTAAAATTTAGATTTCATACTTTT
1 ATTTAAAATTTAAATTTCATACTTTT
97107096 ATTTAAAATTTAAATTTCATACTTTT
1 ATTTAAAATTTAAATTTCATACTTTT
*
97107122 ATTTTAAAT
1 ATTTAAAAT
97107131 AATTTAGTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (26 bp):
ATTTAAAATTTAAATTTCATACTTTT
Found at i:97107385 original size:7 final size:8
Alignment explanation
Indices: 97107356--97107385 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
97107346 TAATACATTA
97107356 AAATATTT
1 AAATATTT
97107364 AAATATTT
1 AAATATTT
97107372 AAATATTT
1 AAATATTT
97107380 -AATATT
1 AAATATT
97107386 AACTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
AAATATTT
Found at i:97110021 original size:18 final size:18
Alignment explanation
Indices: 97110000--97110036 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97109990 ATATGGTTTC
97110000 GGGTCAGGATATGGAAGT
1 GGGTCAGGATATGGAAGT
**
97110018 GGGTTTGGATATGGAAGT
1 GGGTCAGGATATGGAAGT
97110036 G
1 G
97110037 AAGGCAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.03, G:0.46, T:0.27
Consensus pattern (18 bp):
GGGTCAGGATATGGAAGT
Found at i:97110061 original size:6 final size:6
Alignment explanation
Indices: 97110052--97110091 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
97110042 AATAGTGCTA
* * *
97110052 GTGGTG GTGGAG GAGGAG GTGGTG GTGGAG GTGGAG GTGG
1 GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGG
97110092 GGGCAGTGGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.12, C:0.00, G:0.68, T:0.20
Consensus pattern (6 bp):
GTGGAG
Found at i:97110073 original size:18 final size:18
Alignment explanation
Indices: 97110052--97110091 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
97110042 AATAGTGCTA
97110052 GTGGTGGTGGAGGAGGAG
1 GTGGTGGTGGAGGAGGAG
*
97110070 GTGGTGGTGGAGGTGGAG
1 GTGGTGGTGGAGGAGGAG
97110088 GTGG
1 GTGG
97110092 GGGCAGTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.00, G:0.68, T:0.20
Consensus pattern (18 bp):
GTGGTGGTGGAGGAGGAG
Found at i:97110088 original size:105 final size:106
Alignment explanation
Indices: 97110000--97110289 Score: 316
Period size: 108 Copynumber: 2.7 Consensus size: 106
97109990 ATATGGTTTC
* * * *
97110000 GGGTCAGGATATGGAAGTGGGTTTGGATATGGAAGTGAAGGCAATAGTGC-TAGTGGTGGTGGAG
1 GGGTCAGGATACGAAAGTGGATCTGGATATGGAAGTGAAGGCAATAGTGCATAGTGGTGGTGGAG
* * * *
97110064 GAGGAGGTGGTGGTGGAGGTGGAGGTGGGGGCAGTGGAAGA
66 GAGGAGGAGGAGGTGGAGGTGGAGGTCGGGACAGTGGAAGA
* * ***
97110105 GGGTCCGGATACGAAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTAGTAGTGGTGGTGG
1 GGGTCAGGATACGAAAGTGGATCTGGATATGGAAGTGAAGGCAATAGTGC-A-TAGTGGTGGTGG
* * *
97110170 AGGAGGAGGAGGAGGTGGCGGTGGAGGT-GGTGGCAGTGGAGGA
64 AGGAGGAGGAGGAGGTGGAGGTGGAGGTCGG-GACAGTGGAAGA
* * * * *** *
97110213 GGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGGTAGTGC-TGGTGGTGGTGGAG
1 GGGTCAGGATACGAAAGTGGATCTGGATATGGAAGTGAAGGCAATAGTGCATAGTGGTGGTGGAG
97110277 GAGGAGGAGGAGG
66 GAGGAGGAGGAGG
97110290 AGGTGGCGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
105 67 0.41
107 2 0.01
108 96 0.58
ACGTcount: A:0.22, C:0.06, G:0.52, T:0.20
Consensus pattern (106 bp):
GGGTCAGGATACGAAAGTGGATCTGGATATGGAAGTGAAGGCAATAGTGCATAGTGGTGGTGGAG
GAGGAGGAGGAGGTGGAGGTGGAGGTCGGGACAGTGGAAGA
Found at i:97110201 original size:15 final size:15
Alignment explanation
Indices: 97110177--97110214 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
97110167 TGGAGGAGGA
*
97110177 GGAGGAGGTGGCGGT
1 GGAGGAGGTGGCAGT
*
97110192 GGAGGTGGTGGCAGT
1 GGAGGAGGTGGCAGT
97110207 GGAGGAGG
1 GGAGGAGG
97110215 GTCCGGATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.16, C:0.05, G:0.66, T:0.13
Consensus pattern (15 bp):
GGAGGAGGTGGCAGT
Found at i:97110306 original size:93 final size:93
Alignment explanation
Indices: 97110192--97110380 Score: 306
Period size: 93 Copynumber: 2.0 Consensus size: 93
97110182 AGGTGGCGGT
*
97110192 GGAGGTGGTGGCAGTGGAGGAGGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGG
1 GGAGGAGGTGGCAGTGGAGGAGGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGG
*
97110257 TAGTGCTGGTGGTGGTGGAGGAGGAGGA
66 TAGTGCTAGTGGTGGTGGAGGAGGAGGA
* * * *
97110285 GGAGGAGGTGGCGGTGGAGGAGGGTTCGGATATGGAAGTGGATCTGGATATGGAAGTGGAGGTGG
1 GGAGGAGGTGGCAGTGGAGGAGGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGG
* *
97110350 TAGTGCTAGTGGTGGTGGTGGTGGAGGA
66 TAGTGCTAGTGGTGGTGGAGGAGGAGGA
97110378 GGA
1 GGA
97110381 AGTGGAGGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.21, C:0.05, G:0.53, T:0.21
Consensus pattern (93 bp):
GGAGGAGGTGGCAGTGGAGGAGGGTCCGGATACGGAAGTGGATCTGGATATAGAAGTGGAGGTGG
TAGTGCTAGTGGTGGTGGAGGAGGAGGA
Found at i:97110368 original size:111 final size:110
Alignment explanation
Indices: 97110052--97110572 Score: 369
Period size: 108 Copynumber: 4.7 Consensus size: 110
97110042 AATAGTGCTA
* * * * * * * * *
97110052 GTGGTGGTGGAGGAGGAGGTGGTGGTGGAGGTGGAGGTGGG--GGCA-GTGGAAGAGGGTCCGGA
1 GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGGTGGAGGAGGGTCGG-ATATGGAAGTGGATCTGGA
* ** ** *
97110114 TACGAAAGTGGATCTGGATA-TGGAAGTGGAGGTGGTAGTGCTA-GTA
65 TACGGAAGTGGAGGTGG-TAGTGCTAGTGGAGGTGGTAGTGC-AGGTG
* * * * * * *
97110160 GTGGTGGTGGAGGAGGAGGAGGAGGTGGCGGTGGAGG-TGGT-GGCA-GTGGAGGAGGGTCCGGA
1 GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGGTGGAGGAGGGTCGG-ATATGGAAGTGGATCTGGA
** * *
97110222 TACGGAAGTGGATCTGGATA-TAG-AAGTGGAGGTGGTAGTGCTGGTG
65 TACGGAAGTGGAGGTGG-TAGT-GCTAGTGGAGGTGGTAGTGCAGGTG
97110268 GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGGTGGAGGAGGGTTCGGATATGGAAGTGGATCTGGA
1 GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGGTGGAGGAGGG-TCGGATATGGAAGTGGATCTGGA
* * * * *
97110333 TATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTGGTGGAGGAGG
65 TACGGAAGTGGAGGTGGTAGTGCTAGTGGAGGTGGTAGTGCAGG-TG
* * * * * *
97110380 AAGTGGAGGAGGAGGTGGCGGTGGAGGTGGTGGCAATGGAGGAGGGTTCGGATACGGAAGTGGAT
1 --GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGG---TGGAGGAGGG-TCGGATATGGAAGTGGAT
* * * * *
97110445 CTGGATATGGAAGTGGAGGTGGTAGTGCTAGTGGTGGTGGTGGTGGAGGAG
60 CTGGATACGGAAGTGGAGGTGGTAGTGCTAGTGGAGGTGGTAGTGCAGGTG
* * * * * ** ***
97110496 GAGGTGGCGGTGGTGGAGGTGGAGGTGGCAATGGAGGAGGGTCAGGATATGGGTTTGGATCTGGA
1 GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGGTGGAGGAGGGTC-GGATATGGAAGTGGATCTGGA
97110561 TACGGAAGTGGA
65 TACGGAAGTGGA
97110573 TCTGGATATG
Statistics
Matches: 353, Mismatches: 44, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
107 2 0.01
108 130 0.37
109 3 0.01
110 7 0.02
111 83 0.24
112 1 0.00
114 49 0.14
116 1 0.00
117 77 0.22
ACGTcount: A:0.20, C:0.05, G:0.54, T:0.20
Consensus pattern (110 bp):
GTGGTGGAGGAGGAGGAGGAGGAGGTGGCGGTGGAGGAGGGTCGGATATGGAAGTGGATCTGGAT
ACGGAAGTGGAGGTGGTAGTGCTAGTGGAGGTGGTAGTGCAGGTG
Found at i:97110402 original size:6 final size:6
Alignment explanation
Indices: 97110358--97110409 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
97110348 GGTAGTGCTA
* * * * * *
97110358 GTGGTG GTGGTG GTGGAG GAGGAA GTGGAG GAGGAG GTGGCG GTGGAG
1 GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG
97110406 GTGG
1 GTGG
97110410 TGGCAATGGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.15, C:0.02, G:0.65, T:0.17
Consensus pattern (6 bp):
GTGGAG
Found at i:97110405 original size:15 final size:15
Alignment explanation
Indices: 97110363--97110424 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
97110353 TGCTAGTGGT
*
97110363 GGTGGTGGTGGAGGA
1 GGTGGCGGTGGAGGA
** * *
97110378 GGAAGTGGAGGAGGA
1 GGTGGCGGTGGAGGA
*
97110393 GGTGGCGGTGGAGGT
1 GGTGGCGGTGGAGGA
**
97110408 GGTGGCAATGGAGGA
1 GGTGGCGGTGGAGGA
97110423 GG
1 GG
97110425 GTTCGGATAC
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.19, C:0.03, G:0.63, T:0.15
Consensus pattern (15 bp):
GGTGGCGGTGGAGGA
Found at i:97110501 original size:18 final size:18
Alignment explanation
Indices: 97110480--97110514 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97110470 TGCTAGTGGT
*
97110480 GGTGGTGGTGGAGGAGGA
1 GGTGGCGGTGGAGGAGGA
*
97110498 GGTGGCGGTGGTGGAGG
1 GGTGGCGGTGGAGGAGG
97110515 TGGAGGTGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.03, G:0.69, T:0.17
Consensus pattern (18 bp):
GGTGGCGGTGGAGGAGGA
Found at i:97110501 original size:21 final size:21
Alignment explanation
Indices: 97110477--97110524 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
97110467 TAGTGCTAGT
*
97110477 GGTGGTGGTGGTGGAGGAGGA
1 GGTGGCGGTGGTGGAGGAGGA
*
97110498 GGTGGCGGTGGTGGAGGTGGA
1 GGTGGCGGTGGTGGAGGAGGA
97110519 GGTGGC
1 GGTGGC
97110525 AATGGAGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.04, G:0.67, T:0.19
Consensus pattern (21 bp):
GGTGGCGGTGGTGGAGGAGGA
Found at i:97110534 original size:21 final size:21
Alignment explanation
Indices: 97110489--97110535 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
97110479 TGGTGGTGGT
** *
97110489 GGAGGAGGAGGTGGCGGTGGT
1 GGAGGAGGAGGTGGCAATGGA
*
97110510 GGAGGTGGAGGTGGCAATGGA
1 GGAGGAGGAGGTGGCAATGGA
97110531 GGAGG
1 GGAGG
97110536 GTCAGGATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.04, G:0.64, T:0.13
Consensus pattern (21 bp):
GGAGGAGGAGGTGGCAATGGA
Found at i:97110561 original size:18 final size:18
Alignment explanation
Indices: 97110551--97110590 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
97110541 GATATGGGTT
*
97110551 TGGATCTGGATACGGAAG
1 TGGATCTGGATATGGAAG
97110569 TGGATCTGGATATGGAAG
1 TGGATCTGGATATGGAAG
97110587 TGGA
1 TGGA
97110591 GGTAGTGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.40, T:0.25
Consensus pattern (18 bp):
TGGATCTGGATATGGAAG
Found at i:97110702 original size:15 final size:15
Alignment explanation
Indices: 97110682--97110712 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97110672 GGATATGGAA
*
97110682 GTGGAGGTGGTAGTG
1 GTGGAGGTGGCAGTG
97110697 GTGGAGGTGGCAGTG
1 GTGGAGGTGGCAGTG
97110712 G
1 G
97110713 AGGAAGAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.61, T:0.23
Consensus pattern (15 bp):
GTGGAGGTGGCAGTG
Found at i:97110730 original size:18 final size:18
Alignment explanation
Indices: 97110709--97110754 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
97110699 GGAGGTGGCA
* * *
97110709 GTGGAGGAAGAGGAGGTG
1 GTGGTGGAAGAGGAAGAG
97110727 GTGGTGGAAGAGGAAGAG
1 GTGGTGGAAGAGGAAGAG
97110745 GTGGTGGAAG
1 GTGGTGGAAG
97110755 TAGAGGCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.59, T:0.13
Consensus pattern (18 bp):
GTGGTGGAAGAGGAAGAG
Found at i:97110733 original size:21 final size:21
Alignment explanation
Indices: 97110699--97110751 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
97110689 TGGTAGTGGT
** *
97110699 GGAGGTGGCAGTGGAGGAAGA
1 GGAGGTGGTGGTGGAAGAAGA
*
97110720 GGAGGTGGTGGTGGAAGAGGA
1 GGAGGTGGTGGTGGAAGAAGA
*
97110741 AGAGGTGGTGG
1 GGAGGTGGTGG
97110752 AAGTAGAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.02, G:0.60, T:0.13
Consensus pattern (21 bp):
GGAGGTGGTGGTGGAAGAAGA
Found at i:97110759 original size:21 final size:21
Alignment explanation
Indices: 97110721--97110760 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97110711 GGAGGAAGAG
**
97110721 GAGGTGGTGGTGGAAGAGGAA
1 GAGGTGGTGGAAGAAGAGGAA
*
97110742 GAGGTGGTGGAAGTAGAGG
1 GAGGTGGTGGAAGAAGAGG
97110761 CAATGACTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.57, T:0.15
Consensus pattern (21 bp):
GAGGTGGTGGAAGAAGAGGAA
Found at i:97113226 original size:29 final size:29
Alignment explanation
Indices: 97113161--97113247 Score: 102
Period size: 29 Copynumber: 2.9 Consensus size: 29
97113151 CACCACTGAT
** **
97113161 ACATAGTAACTGATAAATATAACACTAGC
1 ACATAGTGCCTGATAAATATAACACCGGC
97113190 ACATAGTGCCTGATAAATATAACACCGGC
1 ACATAGTGCCTGATAAATATAACACCGGC
* *
97113219 ACATAGTGCCTTATACAACATGAACACCG
1 ACATAGTGCCTGATA-AATAT-AACACCG
97113248 TACAAAGTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
29 39 0.78
30 4 0.08
31 7 0.14
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (29 bp):
ACATAGTGCCTGATAAATATAACACCGGC
Found at i:97121944 original size:21 final size:21
Alignment explanation
Indices: 97121904--97121944 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
97121894 AAAAAGTCAA
*
97121904 TAACATGAATTTGTCTAACCT
1 TAACATGAATTTGTCGAACCT
97121925 TAACATGAA-TTGATCGAACC
1 TAACATGAATTTG-TCGAACC
97121945 CAAGTTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.32
Consensus pattern (21 bp):
TAACATGAATTTGTCGAACCT
Found at i:97125318 original size:30 final size:30
Alignment explanation
Indices: 97125284--97125350 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
97125274 CTCCTAAGTC
*
97125284 ATTTTTATAATTATTTAATTTGTTAGGTTA
1 ATTTTGATAATTATTTAATTTGTTAGGTTA
97125314 ATTTTGATAATTATTTAATTTGTTAGGTTA
1 ATTTTGATAATTATTTAATTTGTTAGGTTA
97125344 ATTTTGA
1 ATTTTGA
97125351 AAAAAAGCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (30 bp):
ATTTTGATAATTATTTAATTTGTTAGGTTA
Found at i:97127757 original size:10 final size:10
Alignment explanation
Indices: 97127742--97127774 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
97127732 ATAACAATCA
97127742 ATCCTAAAAT
1 ATCCTAAAAT
97127752 ATCCTAAAAT
1 ATCCTAAAAT
97127762 ATTCCTAAAAT
1 A-TCCTAAAAT
97127773 AT
1 AT
97127775 AATAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (10 bp):
ATCCTAAAAT
Found at i:97127769 original size:11 final size:11
Alignment explanation
Indices: 97127743--97127774 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
97127733 TAACAATCAA
97127743 TCCTAAAATA-
1 TCCTAAAATAT
97127753 TCCTAAAATAT
1 TCCTAAAATAT
97127764 TCCTAAAATAT
1 TCCTAAAATAT
97127775 AATAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
TCCTAAAATAT
Found at i:97129640 original size:3 final size:3
Alignment explanation
Indices: 97129632--97129656 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97129622 TCAACTAATC
97129632 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
97129657 TTTCAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:97135791 original size:16 final size:16
Alignment explanation
Indices: 97135770--97135837 Score: 93
Period size: 16 Copynumber: 4.2 Consensus size: 16
97135760 TTTGGTTCGC
97135770 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
97135786 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
* *
97135801 GTGTATTGGATTATAGG
1 -TGTATTGGATTAGAGA
*
97135818 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
97135834 TGTA
1 TGTA
97135838 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
15 1 0.02
16 46 0.98
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:97135809 original size:32 final size:32
Alignment explanation
Indices: 97135770--97135837 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
97135760 TTTGGTTCGC
97135770 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* * *
97135802 TGTATTGGATTATAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
97135834 TGTA
1 TGTA
97135838 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:97136161 original size:157 final size:157
Alignment explanation
Indices: 97135967--97136276 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
97135957 CCCTTAGCAT
*
97135967 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
97136032 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
97136097 TTTAATAAAATTCTTAATAATTACCAA
131 TTTAATAAAATTCTTAATAATTACCAA
* * * *
97136124 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
97136189 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
97136254 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
97136277 ATATTCTTAT
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAA
Found at i:97136350 original size:157 final size:155
Alignment explanation
Indices: 97136013--97136334 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
97136003 TTAAATTTTA
* * * *
97136013 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * ** *
97136078 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAAAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACAAAAATATGATTTACTAAATC
* * * * *
97136143 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
97136170 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * ***
97136235 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--AAAATATG-ATTTACT-A
97136300 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
97136331 ATAA
1 ATAA
97136335 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACAAAAATATGATTTACTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:97137177 original size:13 final size:13
Alignment explanation
Indices: 97137159--97137188 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
97137149 CAATCAGCTA
97137159 AATTCAGAAAAAC
1 AATTCAGAAAAAC
97137172 AATTCAGAAAAAC
1 AATTCAGAAAAAC
97137185 AATT
1 AATT
97137189 ACATGACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
AATTCAGAAAAAC
Found at i:97139687 original size:12 final size:12
Alignment explanation
Indices: 97139670--97139696 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97139660 TGGCTTAGCC
97139670 AATAATGGGAAG
1 AATAATGGGAAG
97139682 AATAATGGGAAG
1 AATAATGGGAAG
97139694 AAT
1 AAT
97139697 GATTAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.19
Consensus pattern (12 bp):
AATAATGGGAAG
Found at i:97141769 original size:132 final size:132
Alignment explanation
Indices: 97141532--97141774 Score: 321
Period size: 132 Copynumber: 1.8 Consensus size: 132
97141522 AACGGAGGCG
* * * * *
97141532 ATGTTTGATGTTTGACAATTCGGGAAATCGTGCCCTACTATGCTGGGTTGCAATTTCTCGTTTGC
1 ATGTTCGATGTTTGACAATTCGGGAAATAGTGCCCTACTATGCTGGGTTGCAATCTCCCATTTGC
* *
97141597 TCAAAATAATCGAATATCTCTTTAGAATTCCATTCATGTTTTCTAAAAACTTTTTAAAATGAAGG
66 TCAAAATAATCGAATATCCCTTGAGAATTCCATTCATGTTTTCTAAAAACTTTTTAAAATGAAGG
97141662 AA
131 AA
* *
97141664 ATGTTCGATGTTT-AGCAATTCGGGGAATAGTGCCCTA-TCGTGCTGGGTTGCAATCTCCCATTT
1 ATGTTCGATGTTTGA-CAATTCGGGAAATAGTGCCCTACT-ATGCTGGGTTGCAATCTCCCATTT
* * * *
97141727 GTTCAAAATAATCGAATATCCCTTCGA-AATTTCGTTCGTGTTTTCTAA
64 GCTCAAAATAATCGAATATCCCTT-GAGAATTCCATTCATGTTTTCTAA
97141775 GGCGAGGCAA
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
131 2 0.02
132 92 0.97
133 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (132 bp):
ATGTTCGATGTTTGACAATTCGGGAAATAGTGCCCTACTATGCTGGGTTGCAATCTCCCATTTGC
TCAAAATAATCGAATATCCCTTGAGAATTCCATTCATGTTTTCTAAAAACTTTTTAAAATGAAGG
AA
Found at i:97142476 original size:28 final size:26
Alignment explanation
Indices: 97142437--97142488 Score: 61
Period size: 26 Copynumber: 1.9 Consensus size: 26
97142427 TTAAAATCTA
97142437 AATCCATATACTCTTATATTTGAAATTT
1 AATCCATATACT-TT-TATTTGAAATTT
*
97142465 AATCC-TACTACTTTTATTTTAAAT
1 AATCCATA-TACTTTTATTTGAAAT
97142489 AATTTAGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 9 0.41
27 4 0.18
28 9 0.41
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (26 bp):
AATCCATATACTTTTATTTGAAATTT
Found at i:97144569 original size:45 final size:44
Alignment explanation
Indices: 97144409--97144628 Score: 239
Period size: 44 Copynumber: 4.9 Consensus size: 44
97144399 AAATACTTTA
* * *
97144409 GAAGCCACAATCCTTATCTCTCTGAAGTTGCAGTGGAGTAGATC
1 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * * * *
97144453 GAAGCCACAATGCTTATCTCTCTGAAGTTGTAGTAGAGCAGGATA
1 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATC
* * *
97144498 AAATTACCCAAGT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-C
1 GAAGT-CACAA-TCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
*
97144542 TGAAGTTAGCAGAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
1 -GAAGTCA-CA-ATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
*
97144588 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGGGCAG
1 GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAG
97144629 TTGCAATAGA
Statistics
Matches: 149, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.01
44 66 0.44
45 49 0.33
46 31 0.21
47 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (44 bp):
GAAGTCACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
Found at i:97146362 original size:14 final size:13
Alignment explanation
Indices: 97146331--97146371 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
97146321 TTATTTTACC
97146331 ATTTTTTTATAAT
1 ATTTTTTTATAAT
97146344 ATTTTGTTTA-AAT
1 ATTTT-TTTATAAT
*
97146357 ATTTTTATAT-AT
1 ATTTTTTTATAAT
97146369 ATT
1 ATT
97146372 GGTAAATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 8 0.32
13 13 0.52
14 4 0.16
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (13 bp):
ATTTTTTTATAAT
Found at i:97151098 original size:19 final size:18
Alignment explanation
Indices: 97151057--97151112 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
97151047 TGTTTATAAT
* *
97151057 TTTATTCATTTCTTTAT-
1 TTTATTTATTTATTTATG
97151074 TATTATTGT-TTTACTTTATG
1 T-TTATT-TATTTA-TTTATG
97151094 TTTATTTATTTATTTATG
1 TTTATTTATTTATTTATG
97151112 T
1 T
97151113 GTCCATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 1 0.03
18 16 0.50
19 14 0.44
20 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTATTTATTTATTTATG
Found at i:97151226 original size:15 final size:15
Alignment explanation
Indices: 97151206--97151239 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97151196 TTTATTTTTG
*
97151206 TTATTTTCGCTCGTA
1 TTATTTTCGCTCGCA
*
97151221 TTATTTTTGCTCGCA
1 TTATTTTCGCTCGCA
97151236 TTAT
1 TTAT
97151240 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.56
Consensus pattern (15 bp):
TTATTTTCGCTCGCA
Found at i:97153188 original size:552 final size:552
Alignment explanation
Indices: 97152145--97153249 Score: 2174
Period size: 552 Copynumber: 2.0 Consensus size: 552
97152135 GTGTTGATTA
*
97152145 TTTCTTGTCTTTTTGTCAAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCAAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
97152210 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
97152275 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
97152340 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
*
97152405 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
97152470 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
97152535 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
*
97152600 TATTCTTGCTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
97152665 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
97152697 TTTCTTGTCTTTTAGTCAAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCAAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
97152762 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
97152827 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
97152892 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
97152957 TCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
97153022 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
97153087 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
97153152 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
*
97153217 ATCATAAAAAGAGGTGTTGATTCATGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
97153249 T
1 T
97153250 GTTAAATAGA
Statistics
Matches: 549, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
552 549 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (552 bp):
TTTCTTGTCTTTTAGTCAAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
TCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
Found at i:97155114 original size:19 final size:19
Alignment explanation
Indices: 97155062--97155114 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
97155052 GGAGGCAAAA
*
97155062 AAATAAAAAAAATAAAAAGC
1 AAATAAAAAAAA-AAAAACC
97155082 AAA-AAAAAACAAAAAAACC
1 AAATAAAAAA-AAAAAAACC
97155101 AAATAAAAGAAAAA
1 AAATAAAA-AAAAA
97155115 CCTCTACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 15 0.52
20 12 0.41
21 2 0.07
ACGTcount: A:0.83, C:0.08, G:0.04, T:0.06
Consensus pattern (19 bp):
AAATAAAAAAAAAAAAACC
Found at i:97155566 original size:7 final size:6
Alignment explanation
Indices: 97155552--97155601 Score: 57
Period size: 6 Copynumber: 7.8 Consensus size: 6
97155542 AAAAAAAACG
97155552 AAAAGA AAAATGAA AAAATGA AAAAG- AAAAGAA AAAAGA AAAAGA AAAAG
1 AAAAGA AAAA-G-A AAAA-GA AAAAGA AAAAG-A AAAAGA AAAAGA AAAAG
97155602 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.12
6 17 0.43
7 11 0.28
8 7 0.17
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (6 bp):
AAAAGA
Found at i:97155586 original size:18 final size:18
Alignment explanation
Indices: 97155552--97155599 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 18
97155542 AAAAAAAACG
97155552 AAAAGAAAAATGAAAAAATGA
1 AAAAG-AAAA-GAAAAAA-GA
97155573 AAAAGAAAAGAAAAAAGA
1 AAAAGAAAAGAAAAAAGA
97155591 AAAAGAAAA
1 AAAAGAAAA
97155600 AGGAGAGGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.41
19 7 0.26
20 4 0.15
21 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAGAAAAGAAAAAAGA
Found at i:97156589 original size:44 final size:44
Alignment explanation
Indices: 97156521--97157838 Score: 869
Period size: 44 Copynumber: 30.0 Consensus size: 44
97156511 GAAGTCATTA
* * * *
97156521 AAGCAGATCTTGCCTTCATGTATTGG-CGTGAAGTAGATCGAAGG
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
97156565 AAGCAGAT-TCTGTCTTCCTATATTGGTAGGAAGTAGATCGAA-G
1 AAGCAGATCT-TGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* *
97156608 ATA-CAGAT-TCTGTCTTCCTGTATTGGTAGGAAGTAGATCGAAGA
1 A-AGCAGATCT-TGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * *
97156652 AAGCAGATCTTGTCTTCATGTATT-G-ACGTGAAGTAGATC-AAAG
1 AAGCAGATCTTGTCTTCCTATATTGGTA-G-GAAGTAGATCGAAGG
* * ** * *
97156695 ATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCG-ACG
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * * *
97156739 ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* ** * * *
97156784 AAGCAGATTTTACCTTCATGTATTGG-CGTGAAGTAGATCGAA-G
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * *
97156827 ATGCAGATCTTGTCTTTCC-ATATTGGTGGCGAAGTAGATCGAAGA
1 AAGCAGATCTTGTC-TTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * * * *
97156872 AATCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC-AAAG
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * ** * *
97156915 ATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCG-ACG
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * * *
97156959 ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * * *
97157004 AAGCAGATCTTATCTTCATGTATTAGCGT--GAAGTAGATC-AAAG
1 AAGCAGATCTTGTCTTCCTATATT-G-GTAGGAAGTAGATCGAAGG
* * *
97157047 ATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAA-G
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* *
97157091 ATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * * **
97157135 AAGCAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATC-AAAT
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * *
97157178 ATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAA-G
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* *
97157222 ATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * *
97157266 AAGCAGATATTGTCTTCATGTATTAGCGT--GAAGTAGATC-AAAG
1 AAGCAGATCTTGTCTTCCTATATT-G-GTAGGAAGTAGATCGAAGG
* * * * *
97157309 ATAACAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCG-ACG
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * *
97157353 ATGCAGACCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
** * * * * *
97157398 AAGTGGATCTTATCTTCATGTATTGG-CGTGAAGTAGATC-AAAG
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * * * * *
97157441 ATAACAGGTCCTATCTTCCTATATTGGTAGGAAATGGATCGAA-G
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * * *
97157485 AACCAGACCTTGTCTTCCCATATTGGTGGCGAAGTAGATCTAA-G
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * * * * *
97157529 AA-AATGAATCTTATCTTCATGTATTGG-CGTGAAGTAGATC-AAAG
1 AAGCA-G-ATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * * * * *
97157573 ATAACAGGTCCTATCTTCCTATATTGGTAGGAAATGGATCGAA-G
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* *
97157617 ATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGA
1 AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * *
97157661 AAGCAAATCTTGTCTTCATTTATTGG-CGTGAAGTAGATCGAA-G
1 AAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGG
* * * * *
97157704 ATAGCAGGTCCTATTTTCCTATATTGGTAGGAAGTGGATCGAA-G
1 A-AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
* * * *
97157748 ATA-CAGATCTTGTCTTCCCATACTGGTGGGATGAAGTAGATTGAA-G
1 A-AGCAGATCTTGTCTTCCTATA-T--TGGTAGGAAGTAGATCGAAGG
* * * * *
97157794 ATTGCAGATCTTGCCTTCCTGTATTGGCAGCGAAGCAGATCGAAG
1 A-AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG
97157839 ATGGCAGATT
Statistics
Matches: 984, Mismatches: 226, Indels: 126
0.74 0.17 0.09
Matches are distributed among these distances:
42 5 0.01
43 291 0.30
44 525 0.53
45 121 0.12
46 24 0.02
47 18 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (44 bp):
AAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGG
Found at i:97156773 original size:88 final size:87
Alignment explanation
Indices: 97156524--97157840 Score: 1034
Period size: 88 Copynumber: 15.0 Consensus size: 87
97156514 GTCATTAAAG
* * * * *
97156524 CAGATCTTGCCTTCATGTATTGG-CGTGAAGTAGATCGAAGGAAGCAGAT-TCTGTCTTCCTATA
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAA-GATGCAGATCT-TGTCTTCCTATA
97156587 TTGGTAGGAAGTAGATCGAAGAT-A
63 TTGGTAGGAAGTAGATCGAAGATAA
* * * *
97156611 CAGAT-TCTGTCTTCCTGTATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
1 CAGATCT-TGTCTTCCTATATTGGTAGGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCTATAT
*
97156675 T-G-ACGTGAAGTAGATCAAAGATAA
64 TGGTA-G-GAAGTAGATCGAAGATAA
* ** * * * *
97156699 CAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATATTG
*
97156764 GTGGCGAAGTAGATCGAAGA-AA
66 GTAG-GAAGTAGATCGAAGATAA
* ** * * *
97156786 GCAGATTTTACCTTCATGTATTGG-CGTGAAGTAGATCGAAGATGCAGATCTTGTCTTTCC-ATA
1 -CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGATGCAGATCTTGTC-TTCCTATA
*
97156849 TTGGTGGCGAAGTAGATCGAAGA-AA
63 TTGGTAG-GAAGTAGATCGAAGATAA
* * * * * * **
97156874 TCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATA
1 -CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTATA
* * *
97156938 TTGGTAGGAAGTGGATCGACGAT-G
63 TTGGTAGGAAGTAGATCGAAGATAA
* * * * * * *
97156962 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTAT
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCTATAT
* *
97157027 TAGCGT--GAAGTAGATCAAAGATAG
64 T-G-GTAGGAAGTAGATCGAAGATAA
* * *
97157051 TAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATATTG
97157116 GTAGGAAGTAGATCGAAGA-AA
66 GTAGGAAGTAGATCGAAGATAA
* * * * * * * *
97157137 GCAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATCAAATATAGTAGGTCTTGTCTTCCTATA
1 -CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTATA
* *
97157201 TTGGTAGGAAGTGGATCGAAGAT-G
63 TTGGTAGGAAGTAGATCGAAGATAA
* * * *
97157225 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATT
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCTATATT
*
97157290 AGCGT--GAAGTAGATCAAAGATAA
65 -G-GTAGGAAGTAGATCGAAGATAA
* * * * * *
97157313 CAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGACCTTGTCTTCCCATATTG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATATTG
97157378 GTAGCGAAGTAGATCGAAGA-AA
66 GTAG-GAAGTAGATCGAAGATAA
** * * * * * * * * *
97157400 GTGGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATA
1 -CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTATA
* * *
97157464 TTGGTAGGAAATGGATCGAAGA-AC
63 TTGGTAGGAAGTAGATCGAAGATAA
* * * * * * *
97157488 CAGACCTTGTCTTCCCATATTGGTGGCGAAGTAGATCTAAGAAAATG-A-ATCTTATCTTCATGT
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATC---GAAGATGCAGATCTTGTCTTCCTAT
* *
97157551 ATTGG-CGTGAAGTAGATCAAAGATAA
62 ATTGGTAG-GAAGTAGATCGAAGATAA
* * * * *
97157577 CAGGTCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGATCTTGTCTTCCTATATTG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATATTG
97157642 GTAGGAAGTAGATCGAAGA-AA
66 GTAGGAAGTAGATCGAAGATAA
* * * * * * * *
97157663 GCAAATCTTGTCTTCATTTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATA
1 -CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCTATA
*
97157727 TTGGTAGGAAGTGGATCGAAGAT-A
63 TTGGTAGGAAGTAGATCGAAGATAA
* * * * * *
97157751 CAGATCTTGTCTTCCCATACTGGTGGGATGAAGTAGATTGAAGATTGCAGATCTTGCCTTCCTGT
1 CAGATCTTGTCTTCCTATA-T--TGGTAGGAAGTAGATCGAAGA-TGCAGATCTTGTCTTCCTAT
* *
97157816 ATTGGCAGCGAAGCAGATCGAAGAT
62 ATTGGTAG-GAAGTAGATCGAAGAT
97157841 GGCAGATTTT
Statistics
Matches: 974, Mismatches: 199, Indels: 110
0.76 0.16 0.09
Matches are distributed among these distances:
85 11 0.01
86 12 0.01
87 351 0.36
88 452 0.46
89 90 0.09
90 39 0.04
91 19 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (87 bp):
CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCTATATTG
GTAGGAAGTAGATCGAAGATAA
Found at i:97156905 original size:132 final size:131
Alignment explanation
Indices: 97156550--97157839 Score: 1408
Period size: 132 Copynumber: 9.8 Consensus size: 131
97156540 GTATTGGCGT
* * *
97156550 GAAGTAGATCGAAGGAAGCAGAT-TCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATA-CA
1 GAAGTGGATCGAA-GATGCAGATCT-TGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAATCA
* * * * * *
97156613 GAT-TCTGTCTTCCTGTATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
64 GATCT-TGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAAAGCAGGTCTTGTCTTCCTATATT
97156676 -G-ACG
127 GGTA-G
* * * * ** * *
97156680 TGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACG--ATGC
1 -GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAT-C
*** * * * * * * ** * *
97156743 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATTTTACCTTCATGTATT
63 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAAAGCAGGTCTTGTCTTCCTATATT
*
97156808 GG-CG
127 GGTAG
* *
97156812 TGAAGTAGATCGAAGATGCAGATCTTGTCTTTCC-ATATTGGTGGCGAAGTAGATCGAAGAAATC
1 -GAAGTGGATCGAAGATGCAGATCTTGTC-TTCCTATATTGGTAG-GAAGTAGATCGAAGAAATC
**
97156876 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAA-CAGGTCCGGTCTTCCTATATT
63 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-AAGCAGGTCTTGTCTTCCTATATT
97156940 GGTAG
127 GGTAG
* * * * *
97156945 GAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAATCAG
* * * *
97157010 ATCTTATCTTCATGTATTAGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGT
65 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGCAGGTCTTGTCTTCCTATATTGGT
97157075 AG
130 AG
*
97157077 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAATCAGA
* * * *
97157142 TATTGTCTTCATGTATTGGCGTGAAGTAGATCAAATATAGTAGGTCTTGTCTTCCTATATTGGTA
66 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGCAGGTCTTGTCTTCCTATATTGGTA
97157207 G
131 G
*
97157208 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAATCAGA
* * *
97157273 TATTGTCTTCATGTATTAGCGTGAAGTAGATCAAAGATAA-CAGGTCCTGTCTTCCTATATTGGT
66 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-AAGCAGGTCTTGTCTTCCTATATTGGT
97157337 AG
130 AG
* * * *
97157339 GAAGTGGATCGACGATGCAGACCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGAAAGT-G
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAA-TCA
* * *
97157403 GATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAA-CAGGTCCTATCTTCCTATATTG
64 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-AAGCAGGTCTTGTCTTCCTATATTG
97157467 GTAG
128 GTAG
* ** * * * * *
97157471 GAAATGGATCGAAGAACCAGACCTTGTCTTCCCATATTGGTGGCGAAGTAGATCTAAGAAAATGA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAG-AAATCA
* * *
97157536 -ATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAA-CAGGTCCTATCTTCCTATATTG
64 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-AAGCAGGTCTTGTCTTCCTATATTG
97157599 GTAG
128 GTAG
* * *
97157603 GAAATGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAAA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAATCAGA
* * * * * *
97157668 TCTTGTCTTCATTTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGGTA
66 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGCAGGTCTTGTCTTCCTATATTGGTA
97157733 G
131 G
* * * * * *
97157734 GAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGGATGAAGTAGATTGAAG-ATTG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATA-T--TGGTAGGAAGTAGATCGAAGAAAT-
* * * * *
97157798 CAGATCTTGCCTTCCTGTATTGGCAGCGAAGCAGATCGAAGA
62 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCAAAGA
97157840 TGGCAGATTT
Statistics
Matches: 1026, Mismatches: 106, Indels: 50
0.87 0.09 0.04
Matches are distributed among these distances:
129 1 0.00
130 7 0.01
131 442 0.43
132 495 0.48
133 27 0.03
134 39 0.04
135 15 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (131 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAATCAGA
TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGCAGGTCTTGTCTTCCTATATTGGTA
G
Found at i:97157567 original size:526 final size:525
Alignment explanation
Indices: 97156550--97157774 Score: 1635
Period size: 526 Copynumber: 2.3 Consensus size: 525
97156540 GTATTGGCGT
* * *
97156550 GAAGTAGATCGAAGGAAGCAGAT-TCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATA-CA
1 GAAGTGGATCGAA-GATGCAGATCT-TGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCA
* * * * * *
97156613 GATTCTGTCTTCCTGTATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT-
64 GATT-TGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTG
* * * ** * *
97156676 G-ACGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGA
127 GTA-G-GAAGTGGATCGAAGAT-ACAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGA
* * * * * * ** *
97156740 TGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATTTTACCTTCATGT
189 AGCAGATATTGTCTTCACATACTAGTCGCGAAGTAGATCAAAGAAAGCAGATCCTACCTTCATAT
* * * *
97156805 ATTGGCGTGAAGTAGATCGAAGATGCAGATCTTGTCTTTCCATATTGGTGGCGAAGTAGATCGAA
254 ATTGGAGTGAAGTAGATCGAAGATGCAGACCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAA
* *
97156870 GAAATCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCT
319 GAAATCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGATCTTCCT
* * ** *
97156935 ATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG
384 ATATTGGTAGGAAATGGATCGAAGAACCAGACCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG
** * *
97157000 AAGAAAGCAGATCTTATCTTCATGTATTAGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTC
449 AAGAAAGCAGATCTTATCTTCATGTATTAGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
97157065 CTATATTGGTAG
514 CTATATTGGTAG
97157077 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
* * *
97157142 TATTGTCTTCATGTATTGGCGTGAAGTAGATCAAATATAGTAGGTCTTGTCTTCCTATATTGGTA
66 T-TTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTA
*
97157207 GGAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAG
130 GGAAGTGGATCGAAGATACAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAG-AAGCAG
** * * * ** *
97157272 ATATTGTCTTCATGTATTAG-CGTGAAGTAGATCAAAGATAA-CAGGTCCTGTCTTCCTATATTG
194 ATATTGTCTTCACATACTAGTCGCGAAGTAGATCAAAGA-AAGCAGATCCTACCTTCATATATTG
* *
97157335 GTAG-GAAGTGGATCGACGATGCAGACCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGAA
258 G-AGTGAAGTAGATCGAAGATGCAGACCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGAA
* *
97157399 AGT-GGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTAT
322 A-TCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGATCTTCCTAT
* *
97157463 ATTGGTAGGAAATGGATCGAAGAACCAGACCTTGTCTTCCCATATTGGTGGCGAAGTAGATCTAA
386 ATTGGTAGGAAATGGATCGAAGAACCAGACCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
*
97157528 GAAA--ATGAATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
451 GAAAGCA-G-ATCTTATCTTCATGTATTAGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTC
97157591 CTATATTGGTAG
514 CTATATTGGTAG
* *
97157603 GAAATGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAAA
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
* * * *
97157668 TCTTGTCTTCATTTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGGTA
66 T-TTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTA
* *
97157733 GGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGT
130 GGAAGTGGATCGAAGATACAGATCTTGTCTTCCTATATTGGT
97157775 GGGATGAAGT
Statistics
Matches: 614, Mismatches: 72, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
524 1 0.00
525 1 0.00
526 506 0.82
527 102 0.17
528 3 0.00
529 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (525 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGA
TTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTAG
GAAGTGGATCGAAGATACAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAGCAGAT
ATTGTCTTCACATACTAGTCGCGAAGTAGATCAAAGAAAGCAGATCCTACCTTCATATATTGGAG
TGAAGTAGATCGAAGATGCAGACCTTGTCTTCCCATATTGGTAGCGAAGTAGATCGAAGAAATCA
GATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGGTCCGATCTTCCTATATTGG
TAGGAAATGGATCGAAGAACCAGACCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
CAGATCTTATCTTCATGTATTAGCGTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATT
GGTAG
Found at i:97158057 original size:45 final size:45
Alignment explanation
Indices: 97157998--97158193 Score: 118
Period size: 45 Copynumber: 4.4 Consensus size: 45
97157988 CCCTGACTAA
* *
97157998 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
1 AGTGGAATAGATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
* * *
97158043 AGTGGAATAGATTGAAGATCGCA-GA-TCT-TGCCTTCCTGTATTTGGC
1 AGTGGAATAGATTGAAG-CCG-ATAATTCTAT--CTCCCTGTATTTGGC
* * * ** ** * * * *
97158089 AG-CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-AC
1 AGTGGAA-TAGATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGC
* * *
97158132 AATGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
1 AGTGGAATAGATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
97158177 AGTGGAATAGATTGAAG
1 AGTGGAATAGATTGAAG
97158194 ATTGCAGATC
Statistics
Matches: 104, Mismatches: 34, Indels: 26
0.63 0.21 0.16
Matches are distributed among these distances:
42 12 0.12
43 12 0.12
44 5 0.05
45 38 0.37
46 34 0.33
47 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (45 bp):
AGTGGAATAGATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
Found at i:97158570 original size:134 final size:134
Alignment explanation
Indices: 97157784--97158552 Score: 1371
Period size: 134 Copynumber: 5.8 Consensus size: 134
97157774 TGGGATGAAG
97157784 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTA-TTGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
*
97157848 TTTACCT-CCTGACTACAGTTGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
97157912 GGAA
131 GGAA
97157916 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
* *
97157981 TTTACCTCCCTGACTAAAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
97158046 GGAA
131 GGAA
*
97158050 TAGATTGAAGATCGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
* *
97158115 TTTACCTCCCTGACTACAATGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
97158180 GGAA
131 GGAA
*
97158184 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
97158249 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
97158314 GGAA
131 GGAA
* *
97158318 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTTGGCAGAGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
*
97158383 TTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
97158448 GGAA
131 GGAA
* ** * *
97158452 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGTAAAGAAGCAGATTGATGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
* *
97158517 TTTACCTCACTGATTACAGTGGAGTACATTGAAGCC
66 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCC
97158553 AGTAATCTTA
Statistics
Matches: 613, Mismatches: 22, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
132 33 0.05
133 38 0.06
134 542 0.88
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGAT
TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
GGAA
Found at i:97159391 original size:17 final size:17
Alignment explanation
Indices: 97159345--97159391 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
97159335 TTACTCTTCG
97159345 TTTTTTTCTATTTATTTA
1 TTTTTTTCT-TTTATTTA
* *
97159363 TTTGTTTGTTTTATTCT-
1 TTTTTTTCTTTTATT-TA
97159380 TTTTTTTCTTTT
1 TTTTTTTCTTTT
97159392 CTTTTGCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (17 bp):
TTTTTTTCTTTTATTTA
Found at i:97159593 original size:15 final size:15
Alignment explanation
Indices: 97159570--97159600 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97159560 AGAGTTGGGT
97159570 GTTTGAAAAAAAGGG
1 GTTTGAAAAAAAGGG
*
97159585 GTTTTAAAAAAAGGG
1 GTTTGAAAAAAAGGG
97159600 G
1 G
97159601 AGAGACTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.32, T:0.23
Consensus pattern (15 bp):
GTTTGAAAAAAAGGG
Found at i:97160547 original size:19 final size:18
Alignment explanation
Indices: 97160506--97160561 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
97160496 TGTTTATAAT
* *
97160506 TTTATTCATTTCTTTAT-
1 TTTATTTATTTATTTATG
97160523 TATTATTGT-TTTACTTTATG
1 T-TTATT-TATTTA-TTTATG
97160543 TTTATTTATTTATTTATG
1 TTTATTTATTTATTTATG
97160561 T
1 T
97160562 GTCCATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 1 0.03
18 16 0.50
19 14 0.44
20 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTATTTATTTATTTATG
Found at i:97160675 original size:15 final size:15
Alignment explanation
Indices: 97160655--97160688 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97160645 TTTATTTTTG
*
97160655 TTATTTTCGCTCGTA
1 TTATTTTCGCTCGCA
*
97160670 TTATTTTTGCTCGCA
1 TTATTTTCGCTCGCA
97160685 TTAT
1 TTAT
97160689 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.56
Consensus pattern (15 bp):
TTATTTTCGCTCGCA
Found at i:97162495 original size:27 final size:29
Alignment explanation
Indices: 97162463--97162525 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 29
97162453 GTATTTTTTT
97162463 TAATTTGACAT-C-TAAATTTTTTT-AGCC
1 TAATTTGA-ATGCTTAAATTTTTTTGAGCC
*
97162490 TAATTTG-ATGCTTAAATTTTTTTGGGCC
1 TAATTTGAATGCTTAAATTTTTTTGAGCC
97162518 TAATTTGA
1 TAATTTGA
97162526 TACTTGAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
25 2 0.06
26 1 0.03
27 18 0.58
28 10 0.32
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (29 bp):
TAATTTGAATGCTTAAATTTTTTTGAGCC
Found at i:97163031 original size:31 final size:32
Alignment explanation
Indices: 97162975--97163046 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
97162965 AAAAGATTAT
*
97162975 GTACCAAATTAAGGAAAAAGAGTCAAGTTTAG
1 GTACCAAATTAAGAAAAAAGAGTCAAGTTTAG
*
97163007 GTACCAAATT-AGAAAAAAGTGTCAAGTTTAG
1 GTACCAAATTAAGAAAAAAGAGTCAAGTTTAG
97163038 GTACCAAAT
1 GTACCAAAT
97163047 GTTATATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 28 0.74
32 10 0.26
ACGTcount: A:0.46, C:0.11, G:0.19, T:0.24
Consensus pattern (32 bp):
GTACCAAATTAAGAAAAAAGAGTCAAGTTTAG
Found at i:97165149 original size:22 final size:23
Alignment explanation
Indices: 97165121--97165173 Score: 83
Period size: 22 Copynumber: 2.4 Consensus size: 23
97165111 CATGAAGGAA
97165121 CCCCATACCCT-CACTACAACAG
1 CCCCATACCCTCCACTACAACAG
97165143 CCCCATA-CCTCCACTACAACAG
1 CCCCATACCCTCCACTACAACAG
*
97165165 TCCCATACC
1 CCCCATACC
97165174 GTCTGACACT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 3 0.11
22 24 0.86
23 1 0.04
ACGTcount: A:0.30, C:0.51, G:0.04, T:0.15
Consensus pattern (23 bp):
CCCCATACCCTCCACTACAACAG
Found at i:97165632 original size:11 final size:11
Alignment explanation
Indices: 97165618--97165651 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
97165608 CCCTTCCCCT
97165618 TCCCTTCTCTC
1 TCCCTTCTCTC
97165629 TCCCTTCTCTC
1 TCCCTTCTCTC
97165640 TTCCC-TCTCTC
1 -TCCCTTCTCTC
97165651 T
1 T
97165652 TCTTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 17 0.77
12 4 0.18
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:97165633 original size:22 final size:22
Alignment explanation
Indices: 97165608--97165651 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
97165598 TTCCGGATTC
97165608 CCCTTC-CCCTTCCCTTCTCTCT
1 CCCTTCTCCCTTCCC-TCTCTCT
*
97165630 CCCTTCTCTCTTCCCTCTCTCT
1 CCCTTCTCCCTTCCCTCTCTCT
97165652 TCTTTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (22 bp):
CCCTTCTCCCTTCCCTCTCTCT
Found at i:97165652 original size:11 final size:11
Alignment explanation
Indices: 97165616--97165653 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
97165606 TCCCCTTCCC
97165616 CTTCCCT-TCT
1 CTTCCCTCTCT
97165626 CTCTCCCTTCTCT
1 CT-TCCC-TCTCT
97165639 CTTCCCTCTCT
1 CTTCCCTCTCT
97165650 CTTC
1 CTTC
97165654 TTTTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 5 0.20
13 5 0.20
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
CTTCCCTCTCT
Done.