Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 308 of 318
Found at i:97412689 original size:7 final size:7
Alignment explanation
Indices: 97412670--97412712 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
97412660 AACACAAATG
97412670 TATCATA
1 TATCATA
97412677 -ATCATA
1 TATCATA
97412683 TATCATA
1 TATCATA
*
97412690 TATACATG
1 TAT-CATA
97412698 TATCATA
1 TATCATA
*
97412705 AATCATA
1 TATCATA
97412712 T
1 T
97412713 GGCATACATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
6 6 0.20
7 18 0.60
8 6 0.20
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.40
Consensus pattern (7 bp):
TATCATA
Found at i:97412703 original size:15 final size:13
Alignment explanation
Indices: 97412667--97412710 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 13
97412657 CAGAACACAA
97412667 ATGTATCATAATC
1 ATGTATCATAATC
*
97412680 ATATATCATATATAC
1 ATGTATCATA-AT-C
97412695 ATGTATCATAAATC
1 ATGTATCAT-AATC
97412709 AT
1 AT
97412711 ATGGCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 9 0.35
14 5 0.19
15 11 0.42
16 1 0.04
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (13 bp):
ATGTATCATAATC
Found at i:97416786 original size:18 final size:17
Alignment explanation
Indices: 97416753--97416788 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
97416743 CATTATGATA
97416753 AACCTAAAACTTTTTTT
1 AACCTAAAACTTTTTTT
97416770 AACCTAAAACTTTTTTT
1 AACCTAAAACTTTTTTT
97416787 AA
1 AA
97416789 AATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (17 bp):
AACCTAAAACTTTTTTT
Found at i:97416796 original size:18 final size:17
Alignment explanation
Indices: 97416757--97416795 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
97416747 ATGATAAACC
**
97416757 TAAAACTTTTTTTAACC
1 TAAAACTTTTTTTAAAA
97416774 TAAAACTTTTTTTAAAA
1 TAAAACTTTTTTTAAAA
97416791 TAAAA
1 TAAAA
97416796 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAACTTTTTTTAAAA
Found at i:97426353 original size:14 final size:14
Alignment explanation
Indices: 97426334--97426363 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97426324 TAAAAATTAT
97426334 AAATAATAATAGTA
1 AAATAATAATAGTA
*
97426348 AAATAATAGTAGTA
1 AAATAATAATAGTA
97426362 AA
1 AA
97426364 CGGTAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (14 bp):
AAATAATAATAGTA
Found at i:97426529 original size:20 final size:20
Alignment explanation
Indices: 97426506--97426544 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
97426496 AATATAACAA
97426506 ACAATGTA-ATAAATATAATG
1 ACAATGTACATAAA-ATAATG
*
97426526 ACAATTTACATAAAATAAT
1 ACAATGTACATAAAATAAT
97426545 TAGTTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (20 bp):
ACAATGTACATAAAATAATG
Found at i:97426668 original size:14 final size:13
Alignment explanation
Indices: 97426651--97426729 Score: 63
Period size: 14 Copynumber: 5.7 Consensus size: 13
97426641 AAATTAAATG
97426651 AAAATAAATATAAA
1 AAAAT-AATATAAA
97426665 AAAATAATA-AAA
1 AAAATAATATAAA
*
97426677 ATGATATAATAAGTATAA
1 A--AAATAAT-A-TA-AA
97426695 AAAATAATATAATA
1 AAAATAATATAA-A
97426709 AAAATAATAT-AA
1 AAAATAATATAAA
*
97426721 TAAATAATA
1 AAAATAATA
97426730 GGAAAATAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
12 13 0.24
13 6 0.11
14 24 0.44
15 2 0.04
16 6 0.11
17 1 0.02
18 3 0.05
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.27
Consensus pattern (13 bp):
AAAATAATATAAA
Found at i:97426715 original size:21 final size:21
Alignment explanation
Indices: 97426651--97426729 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
97426641 AAATTAAATG
97426651 AAAATAAATATAA-AAAAATAATA
1 AAAAT-AATATAATAAAAAT-A-A
* **
97426674 AAAATGATATAATAAGTATAA
1 AAAATAATATAATAAAAATAA
97426695 AAAATAATATAATAAAAATAA
1 AAAATAATATAATAAAAATAA
*
97426716 TATAATAA-ATAATA
1 -AAAATAATATAATA
97426730 GGAAAATAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 25 0.53
22 13 0.28
23 9 0.19
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.27
Consensus pattern (21 bp):
AAAATAATATAATAAAAATAA
Found at i:97433826 original size:3 final size:3
Alignment explanation
Indices: 97433818--97433853 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
97433808 GTCATGTTAT
97433818 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97433854 ACTACATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:97434867 original size:15 final size:15
Alignment explanation
Indices: 97434849--97434891 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
97434839 TCATCCTCCG
97434849 GCTCATTGACCTCTT
1 GCTCATTGACCTCTT
**
97434864 GCTCATTGACCGGTT
1 GCTCATTGACCTCTT
*
97434879 GCTCATCGACCTC
1 GCTCATTGACCTC
97434892 GCAAGATCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.14, C:0.35, G:0.19, T:0.33
Consensus pattern (15 bp):
GCTCATTGACCTCTT
Found at i:97438524 original size:21 final size:22
Alignment explanation
Indices: 97438498--97438544 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
97438488 CTCTGCTCAA
*
97438498 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
97438519 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
97438541 ACTC
1 ACTC
97438545 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:97441692 original size:40 final size:40
Alignment explanation
Indices: 97441637--97441714 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
97441627 TTTTATTGAG
97441637 TTAATGACATTATGGACTTCGTATTAATTTAGACATTTAC
1 TTAATGACATTATGGACTTCGTATTAATTTAGACATTTAC
97441677 TTAATGACATTATGGACTTCGTATTAATTTAGACATTT
1 TTAATGACATTATGGACTTCGTATTAATTTAGACATTT
97441715 TTAGAAGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.44
Consensus pattern (40 bp):
TTAATGACATTATGGACTTCGTATTAATTTAGACATTTAC
Found at i:97442724 original size:16 final size:18
Alignment explanation
Indices: 97442703--97442740 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
97442693 TTAGGGGAGA
*
97442703 GAATAAAA-AGTTGG-AT
1 GAATAAAATACTTGGAAT
97442719 GAATAAAATACTTGGAAT
1 GAATAAAATACTTGGAAT
97442737 GAAT
1 GAAT
97442741 TATCAGTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 5 0.26
18 6 0.32
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (18 bp):
GAATAAAATACTTGGAAT
Found at i:97445110 original size:16 final size:16
Alignment explanation
Indices: 97445089--97445121 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
97445079 ATGTTGGTCC
97445089 TTAATGCTTTGTAACT
1 TTAATGCTTTGTAACT
97445105 TTAATGCTTTGTAACT
1 TTAATGCTTTGTAACT
97445121 T
1 T
97445122 ATGGTACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (16 bp):
TTAATGCTTTGTAACT
Found at i:97458597 original size:960 final size:960
Alignment explanation
Indices: 97456977--97458897 Score: 3842
Period size: 960 Copynumber: 2.0 Consensus size: 960
97456967 AGAGATTAAG
97456977 GGTATGATAAAAATGAAAAAGACATAAGTATAAATTTGGCTCTAGAAGTATGCAGCCTAAGTTAC
1 GGTATGATAAAAATGAAAAAGACATAAGTATAAATTTGGCTCTAGAAGTATGCAGCCTAAGTTAC
97457042 TTAGACCATATATATATATATATCGGTCAATTTGACCGTCATTCCGTCATTTTTGTCAAAATTGT
66 TTAGACCATATATATATATATATCGGTCAATTTGACCGTCATTCCGTCATTTTTGTCAAAATTGT
97457107 ATGAATTTAATAGAAATTGGTCACTTGCAAGTTGCAAGCATGTGAATAACAATTTCATTAGTTTA
131 ATGAATTTAATAGAAATTGGTCACTTGCAAGTTGCAAGCATGTGAATAACAATTTCATTAGTTTA
97457172 GGCTATTTTGCCAGAAATTAACCAGAATTAGGCAAAATATTTATAAAAAATTGACAAAAGTCTAA
196 GGCTATTTTGCCAGAAATTAACCAGAATTAGGCAAAATATTTATAAAAAATTGACAAAAGTCTAA
97457237 TAGCTTCATCAACTAAAGCTAAATTGACTGAAAATAATAGCATGGGGACTAAATTGACCAGAACT
261 TAGCTTCATCAACTAAAGCTAAATTGACTGAAAATAATAGCATGGGGACTAAATTGACCAGAACT
97457302 AATAGTATGAGCCAAATTGACCCAAGTAAAAGAATAAGGACCAAAATGATATAATTTGCATAGTT
326 AATAGTATGAGCCAAATTGACCCAAGTAAAAGAATAAGGACCAAAATGATATAATTTGCATAGTT
97457367 TGAGGGACAATTTATAGTTATGCCAAAGAAAATTTGCGGTTAATTAGTTTTCATGGTATGTTATG
391 TGAGGGACAATTTATAGTTATGCCAAAGAAAATTTGCGGTTAATTAGTTTTCATGGTATGTTATG
97457432 CTCACTCTCAAACGTATAGAGAGGAAAATCTATGAAGTAAATGACTTGAATCGTGATCTTTTCCA
456 CTCACTCTCAAACGTATAGAGAGGAAAATCTATGAAGTAAATGACTTGAATCGTGATCTTTTCCA
97457497 CCTATTTCGTAATTTATGGAACTTGCATATATGGATAGGGAAATGAGGTACAAAGATAAGAAACA
521 CCTATTTCGTAATTTATGGAACTTGCATATATGGATAGGGAAATGAGGTACAAAGATAAGAAACA
97457562 GAAATTGACGGTCTGTTTTGCAGTGAGCAATCTCATCAACCTTGTCAAATTTGATGGCATTCTCA
586 GAAATTGACGGTCTGTTTTGCAGTGAGCAATCTCATCAACCTTGTCAAATTTGATGGCATTCTCA
97457627 TTCTGTTATTTTGAGAAACATGTCCTTCAAGATTTTGTTTGAAGAATTACCATATACATGGCTTT
651 TTCTGTTATTTTGAGAAACATGTCCTTCAAGATTTTGTTTGAAGAATTACCATATACATGGCTTT
97457692 TCTTTGATTGATGCAACAAGGGGGTTGAGTTTATTGATATAGTTTGTTATATGTTTCATGCATAA
716 TCTTTGATTGATGCAACAAGGGGGTTGAGTTTATTGATATAGTTTGTTATATGTTTCATGCATAA
97457757 GGATTTTAAGTCTAGTGGCCATGTTTATTTTGCAAAAAGTCTGAAGCTGACCTTGTGAACTTTTT
781 GGATTTTAAGTCTAGTGGCCATGTTTATTTTGCAAAAAGTCTGAAGCTGACCTTGTGAACTTTTT
97457822 TTTTTTTGCATGCGTTTAGTCACTTTTCTTTTCAGCATTATTAAGTGCACGAGAAATGCTTACTC
846 TTTTTTTGCATGCGTTTAGTCACTTTTCTTTTCAGCATTATTAAGTGCACGAGAAATGCTTACTC
97457887 CAGAGGATGGATCAGATGATCTTACTCGAGCACTGAATAATCGTCTGATT
911 CAGAGGATGGATCAGATGATCTTACTCGAGCACTGAATAATCGTCTGATT
97457937 GGTATGATAAAAATGAAAAAGACATAAGTATAAATTTGGCTCTAGAAGTATGCAGCCTAAGTTAC
1 GGTATGATAAAAATGAAAAAGACATAAGTATAAATTTGGCTCTAGAAGTATGCAGCCTAAGTTAC
97458002 TTAGACCATATATATATATATATCGGTCAATTTGACCGTCATTCCGTCATTTTTGTCAAAATTGT
66 TTAGACCATATATATATATATATCGGTCAATTTGACCGTCATTCCGTCATTTTTGTCAAAATTGT
97458067 ATGAATTTAATAGAAATTGGTCACTTGCAAGTTGCAAGCATGTGAATAACAATTTCATTAGTTTA
131 ATGAATTTAATAGAAATTGGTCACTTGCAAGTTGCAAGCATGTGAATAACAATTTCATTAGTTTA
97458132 GGCTATTTTGCCAGAAATTAACCAGAATTAGGCAAAATATTTATAAAAAATTGACAAAAGTCTAA
196 GGCTATTTTGCCAGAAATTAACCAGAATTAGGCAAAATATTTATAAAAAATTGACAAAAGTCTAA
97458197 TAGCTTCATCAACTAAAGCTAAATTGACTGAAAATAATAGCATGGGGACTAAATTGACCAGAACT
261 TAGCTTCATCAACTAAAGCTAAATTGACTGAAAATAATAGCATGGGGACTAAATTGACCAGAACT
97458262 AATAGTATGAGCCAAATTGACCCAAGTAAAAGAATAAGGACCAAAATGATATAATTTGCATAGTT
326 AATAGTATGAGCCAAATTGACCCAAGTAAAAGAATAAGGACCAAAATGATATAATTTGCATAGTT
97458327 TGAGGGACAATTTATAGTTATGCCAAAGAAAATTTGCGGTTAATTAGTTTTCATGGTATGTTATG
391 TGAGGGACAATTTATAGTTATGCCAAAGAAAATTTGCGGTTAATTAGTTTTCATGGTATGTTATG
97458392 CTCACTCTCAAACGTATAGAGAGGAAAATCTATGAAGTAAATGACTTGAATCGTGATCTTTTCCA
456 CTCACTCTCAAACGTATAGAGAGGAAAATCTATGAAGTAAATGACTTGAATCGTGATCTTTTCCA
97458457 CCTATTTCGTAATTTATGGAACTTGCATATATGGATAGGGAAATGAGGTACAAAGATAAGAAACA
521 CCTATTTCGTAATTTATGGAACTTGCATATATGGATAGGGAAATGAGGTACAAAGATAAGAAACA
97458522 GAAATTGACGGTCTGTTTTGCAGTGAGCAATCTCATCAACCTTGTCAAATTTGATGGCATTCTCA
586 GAAATTGACGGTCTGTTTTGCAGTGAGCAATCTCATCAACCTTGTCAAATTTGATGGCATTCTCA
97458587 TTCTGTTATTTTGAGAAACATGTCCTTCAAGATTTTGTTTGAAGAATTACCATATACATGGCTTT
651 TTCTGTTATTTTGAGAAACATGTCCTTCAAGATTTTGTTTGAAGAATTACCATATACATGGCTTT
97458652 TCTTTGATTGATGCAACAAGGGGGTTGAGTTTATTGATATAGTTTGTTATATGTTTCATGCATAA
716 TCTTTGATTGATGCAACAAGGGGGTTGAGTTTATTGATATAGTTTGTTATATGTTTCATGCATAA
97458717 GGATTTTAAGTCTAGTGGCCATGTTTATTTTGCAAAAAGTCTGAAGCTGACCTTGTGAACTTTTT
781 GGATTTTAAGTCTAGTGGCCATGTTTATTTTGCAAAAAGTCTGAAGCTGACCTTGTGAACTTTTT
97458782 TTTTTTTGCATGCGTTTAGTCACTTTTCTTTTCAGCATTATTAAGTGCACGAGAAATGCTTACTC
846 TTTTTTTGCATGCGTTTAGTCACTTTTCTTTTCAGCATTATTAAGTGCACGAGAAATGCTTACTC
97458847 CAGAGGATGGATCAGATGATCTTACTCGAGCACTGAATAATCGTCTGATT
911 CAGAGGATGGATCAGATGATCTTACTCGAGCACTGAATAATCGTCTGATT
97458897 G
1 G
97458898 CTTTGTCATT
Statistics
Matches: 961, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
960 961 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (960 bp):
GGTATGATAAAAATGAAAAAGACATAAGTATAAATTTGGCTCTAGAAGTATGCAGCCTAAGTTAC
TTAGACCATATATATATATATATCGGTCAATTTGACCGTCATTCCGTCATTTTTGTCAAAATTGT
ATGAATTTAATAGAAATTGGTCACTTGCAAGTTGCAAGCATGTGAATAACAATTTCATTAGTTTA
GGCTATTTTGCCAGAAATTAACCAGAATTAGGCAAAATATTTATAAAAAATTGACAAAAGTCTAA
TAGCTTCATCAACTAAAGCTAAATTGACTGAAAATAATAGCATGGGGACTAAATTGACCAGAACT
AATAGTATGAGCCAAATTGACCCAAGTAAAAGAATAAGGACCAAAATGATATAATTTGCATAGTT
TGAGGGACAATTTATAGTTATGCCAAAGAAAATTTGCGGTTAATTAGTTTTCATGGTATGTTATG
CTCACTCTCAAACGTATAGAGAGGAAAATCTATGAAGTAAATGACTTGAATCGTGATCTTTTCCA
CCTATTTCGTAATTTATGGAACTTGCATATATGGATAGGGAAATGAGGTACAAAGATAAGAAACA
GAAATTGACGGTCTGTTTTGCAGTGAGCAATCTCATCAACCTTGTCAAATTTGATGGCATTCTCA
TTCTGTTATTTTGAGAAACATGTCCTTCAAGATTTTGTTTGAAGAATTACCATATACATGGCTTT
TCTTTGATTGATGCAACAAGGGGGTTGAGTTTATTGATATAGTTTGTTATATGTTTCATGCATAA
GGATTTTAAGTCTAGTGGCCATGTTTATTTTGCAAAAAGTCTGAAGCTGACCTTGTGAACTTTTT
TTTTTTTGCATGCGTTTAGTCACTTTTCTTTTCAGCATTATTAAGTGCACGAGAAATGCTTACTC
CAGAGGATGGATCAGATGATCTTACTCGAGCACTGAATAATCGTCTGATT
Found at i:97468253 original size:146 final size:146
Alignment explanation
Indices: 97467989--97468281 Score: 523
Period size: 146 Copynumber: 2.0 Consensus size: 146
97467979 TGGTCAGCTT
97467989 TAACATATTTACTATTTTTAGACTTCATTGAAACTTACACCGCTTGACATTGCAACTTGCAAATC
1 TAACATATTTACTATTTTTAGACTTCATTGAAACTTACACCGCTTGACATTGCAACTTGCAAATC
* **
97468054 ACAACTTGCACAATTAGGTAAGCTGATTTATCGATCTTATCAACATCGAATGCATTAAATATGCT
66 ACAACTTGCACAATTAGGTAAGCTGATCTATCGATCTTATCAACATCGAATGCATTAAATACACT
97468119 ACCTACTTAGTTATAA
131 ACCTACTTAGTTATAA
* *
97468135 TAACATATTTACTATTTTTAGACTTCATTGTAACTTGCACCGCTTGACATTGCAACTTGCAAATC
1 TAACATATTTACTATTTTTAGACTTCATTGAAACTTACACCGCTTGACATTGCAACTTGCAAATC
*
97468200 ACAACTTGCACAATTAGGTAAGTTGATCTATCGATCTTATCAACATCGAATGCATTAAATACACT
66 ACAACTTGCACAATTAGGTAAGCTGATCTATCGATCTTATCAACATCGAATGCATTAAATACACT
*
97468265 ACCTACTTAGTTCTAA
131 ACCTACTTAGTTATAA
97468281 T
1 T
97468282 TTAACTAAGT
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
146 140 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.35
Consensus pattern (146 bp):
TAACATATTTACTATTTTTAGACTTCATTGAAACTTACACCGCTTGACATTGCAACTTGCAAATC
ACAACTTGCACAATTAGGTAAGCTGATCTATCGATCTTATCAACATCGAATGCATTAAATACACT
ACCTACTTAGTTATAA
Found at i:97468314 original size:146 final size:145
Alignment explanation
Indices: 97468020--97468314 Score: 416
Period size: 146 Copynumber: 2.0 Consensus size: 145
97468010 ACTTCATTGA
*
97468020 AACTTACACCGCTTGACATTGCAACTTGCAAATCACAACTTGCACAATTAGGTAAGCTGATTTAT
1 AACTTACACCGCTTGACATTGCAACTTGCAAATCACAACTTGCACAATTAGGTAAGCTGATCTAT
** * * *
97468085 CGATCTTATCAACATCGAATGCATTAAATATGCTACCTACTTAGTTATAATAACATATTTACTAT
66 CGATCTTATCAACATCGAATGCATTAAATACACTACCTACTTAGTTATAATAACATAGTTACAAA
* **
97468150 TTTTAGACTTCATTGT
131 TATTA-ACTTCAAAGT
* *
97468166 AACTTGCACCGCTTGACATTGCAACTTGCAAATCACAACTTGCACAATTAGGTAAGTTGATCTAT
1 AACTTACACCGCTTGACATTGCAACTTGCAAATCACAACTTGCACAATTAGGTAAGCTGATCTAT
*
97468231 CGATCTTATCAACATCGAATGCATTAAATACACTACCTACTTAGTTCTAATTTAAC-TAAGTTAC
66 CGATCTTATCAACATCGAATGCATTAAATACACTACCTACTTAGTTATAA--TAACAT-AGTTAC
97468295 AAAATATT-ACTT-AAAGT
128 -AAATATTAACTTCAAAGT
97468312 AAC
1 AAC
97468315 AAAATGAAAC
Statistics
Matches: 133, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
146 115 0.86
147 5 0.04
148 9 0.07
149 4 0.03
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (145 bp):
AACTTACACCGCTTGACATTGCAACTTGCAAATCACAACTTGCACAATTAGGTAAGCTGATCTAT
CGATCTTATCAACATCGAATGCATTAAATACACTACCTACTTAGTTATAATAACATAGTTACAAA
TATTAACTTCAAAGT
Found at i:97469121 original size:12 final size:12
Alignment explanation
Indices: 97469104--97469138 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
97469094 CAAACCCCGA
97469104 ACCCATATATGC
1 ACCCATATATGC
97469116 ACCCATATATGC
1 ACCCATATATGC
* *
97469128 GCCCATGTATG
1 ACCCATATATG
97469139 TGAACCCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (12 bp):
ACCCATATATGC
Found at i:97469379 original size:22 final size:22
Alignment explanation
Indices: 97469354--97469445 Score: 85
Period size: 22 Copynumber: 4.1 Consensus size: 22
97469344 ATGTGTAAAT
*
97469354 CCTAGATGAAATATTATACGAA
1 CCTAGATGAATTATTATACGAA
* * *
97469376 CCTATATGAATTATTATGCAAA
1 CCTAGATGAATTATTATACGAA
* * *
97469398 CCCTAGATGAAGTACTATATGAA
1 -CCTAGATGAATTATTATACGAA
* * *
97469421 CCTATATGAATTGTTATGCGAA
1 CCTAGATGAATTATTATACGAA
97469443 CCT
1 CCT
97469446 TTATGCTAAC
Statistics
Matches: 53, Mismatches: 16, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
22 37 0.70
23 16 0.30
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (22 bp):
CCTAGATGAATTATTATACGAA
Found at i:97469405 original size:45 final size:45
Alignment explanation
Indices: 97469354--97469444 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
97469344 ATGTGTAAAT
*
97469354 CCTAGATGAAATATTATACGAACCTATATGAATTATTATGCAAAC
1 CCTAGATGAAATACTATACGAACCTATATGAATTATTATGCAAAC
* * * *
97469399 CCTAGATGAAGTACTATATGAACCTATATGAATTGTTATGCGAAC
1 CCTAGATGAAATACTATACGAACCTATATGAATTATTATGCAAAC
97469444 C
1 C
97469445 TTTATGCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (45 bp):
CCTAGATGAAATACTATACGAACCTATATGAATTATTATGCAAAC
Found at i:97469523 original size:44 final size:43
Alignment explanation
Indices: 97469456--97469545 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 43
97469446 TTATGCTAAC
*
97469456 TATATTGCGAACCCCTAGAACATGATATGCAAACCCTTAAGGGAA
1 TATATTGCGAACCCCTAGAACATG-TAGGCAAACCCTT-AGGGAA
* * * *
97469501 TATA-TGCGAACCCTTAGTACATGTAGGCAATCCCTTAGTGAA
1 TATATTGCGAACCCCTAGAACATGTAGGCAAACCCTTAGGGAA
97469543 TAT
1 TAT
97469546 GTCTGTGAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
42 8 0.20
43 11 0.28
44 17 0.43
45 4 0.10
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (43 bp):
TATATTGCGAACCCCTAGAACATGTAGGCAAACCCTTAGGGAA
Found at i:97469788 original size:15 final size:15
Alignment explanation
Indices: 97469736--97469813 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 15
97469726 TGAAATATTA
*
97469736 TGTGAACCCTATATG
1 TGTGAACCTTATATG
* *
97469751 TATGAACCTTATATA
1 TGTGAACCTTATATG
** *
97469766 TGCAAACCTTGTATG
1 TGTGAACCTTATATG
**
97469781 TGTGAACCCTCTATACA
1 TGTGAA-CCT-TATATG
*
97469798 TGTGAACCTAATATG
1 TGTGAACCTTATATG
97469813 T
1 T
97469814 ATGTGGTAGT
Statistics
Matches: 45, Mismatches: 16, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
15 30 0.67
16 6 0.13
17 9 0.20
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (15 bp):
TGTGAACCTTATATG
Found at i:97472750 original size:10 final size:10
Alignment explanation
Indices: 97472735--97472770 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
97472725 AAGGTGATTA
97472735 TTTTTTTTCT
1 TTTTTTTTCT
97472745 TTTTTTTTCTT
1 TTTTTTTTC-T
97472756 ATTTTTTTTCT
1 -TTTTTTTTCT
97472767 TTTT
1 TTTT
97472771 CAAATCATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 13 0.54
11 2 0.08
12 9 0.38
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:97473737 original size:13 final size:14
Alignment explanation
Indices: 97473712--97473741 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
97473702 ATACGTATAC
97473712 ATTTATATATTATT
1 ATTTATATATTATT
97473726 ATTTAT-TATTATT
1 ATTTATATATTATT
97473739 ATT
1 ATT
97473742 AGTTTTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATATATTATT
Found at i:97473754 original size:16 final size:15
Alignment explanation
Indices: 97473717--97473762 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
97473707 TATACATTTA
97473717 TATATTATTA-TTTAT
1 TATATTATTAGTTT-T
97473732 TATTATTATTAGTTTT
1 TA-TATTATTAGTTTT
97473748 TGATATTATT-GTTTT
1 T-ATATTATTAGTTTT
97473763 GTTAAATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 7 0.25
16 17 0.61
17 4 0.14
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TATATTATTAGTTTT
Found at i:97475673 original size:38 final size:39
Alignment explanation
Indices: 97475626--97475701 Score: 109
Period size: 38 Copynumber: 1.9 Consensus size: 39
97475616 TAATACAACC
* *
97475626 AAACGTTTATTATATTTAT-TCGTATTTTTAATATAATA
1 AAACATTTATTATATTTATGTAGTATTTTTAATATAATA
*
97475664 AAACATTTATTATATTTATGGTAGTGTTTTTAATATAA
1 AAACATTTATTATATTTAT-GTAGTATTTTTAATATAA
97475702 ATACTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 18 0.55
40 15 0.45
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (39 bp):
AAACATTTATTATATTTATGTAGTATTTTTAATATAATA
Found at i:97478576 original size:9 final size:9
Alignment explanation
Indices: 97478562--97478586 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
97478552 GGTATTTTTC
97478562 GGTAATTCG
1 GGTAATTCG
97478571 GGTAATTCG
1 GGTAATTCG
97478580 GGTAATT
1 GGTAATT
97478587 TTTAACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (9 bp):
GGTAATTCG
Found at i:97478764 original size:12 final size:12
Alignment explanation
Indices: 97478747--97478771 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97478737 AGTAATTTCA
97478747 GGTCGGTTAACC
1 GGTCGGTTAACC
97478759 GGTCGGTTAACC
1 GGTCGGTTAACC
97478771 G
1 G
97478772 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:97480535 original size:22 final size:22
Alignment explanation
Indices: 97480507--97480558 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
97480497 ACTCATCCTA
97480507 ATTAAAATAATAACTTTTTCTT
1 ATTAAAATAATAACTTTTTCTT
*
97480529 ATTAAAATGATAACTTTTTCTT
1 ATTAAAATAATAACTTTTTCTT
*
97480551 AGTAAAAT
1 ATTAAAAT
97480559 GTTGGGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (22 bp):
ATTAAAATAATAACTTTTTCTT
Found at i:97492747 original size:4 final size:4
Alignment explanation
Indices: 97492738--97492774 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
97492728 ACAATGATAA
97492738 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
97492775 AACAGTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:97493104 original size:13 final size:14
Alignment explanation
Indices: 97493081--97493110 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
97493071 TTGTATTTTT
97493081 AAAAAACACACAAC
1 AAAAAACACACAAC
97493095 AAAAAA-ACACAAC
1 AAAAAACACACAAC
97493108 AAA
1 AAA
97493111 GATGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAACACACAAC
Found at i:97505092 original size:7 final size:7
Alignment explanation
Indices: 97505079--97505108 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
97505069 TTAATAAATA
97505079 ATATTAT
1 ATATTAT
*
97505086 ATGTTAT
1 ATATTAT
97505093 ATATTAT
1 ATATTAT
97505100 ATATTAT
1 ATATTAT
97505107 AT
1 AT
97505109 GTATTAGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (7 bp):
ATATTAT
Found at i:97507916 original size:18 final size:18
Alignment explanation
Indices: 97507893--97507935 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
97507883 TTAAGGTATT
97507893 TTTCATATCCGTTTTATA
1 TTTCATATCCGTTTTATA
*
97507911 TTTCATATCTGTTTTATA
1 TTTCATATCCGTTTTATA
*
97507929 ATTCATA
1 TTTCATA
97507936 AACATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.56
Consensus pattern (18 bp):
TTTCATATCCGTTTTATA
Found at i:97510413 original size:21 final size:24
Alignment explanation
Indices: 97510389--97510433 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
97510379 AATAGAAGAT
97510389 AAAAG-AGAAA-GTAG-GTGAAAA
1 AAAAGAAGAAAGGTAGAGTGAAAA
97510410 AAAAGATAGAAAGGTAGAGTGAAA
1 AAAAGA-AGAAAGGTAGAGTGAAA
97510434 GTCTTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.25
23 5 0.25
24 4 0.20
25 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.29, T:0.11
Consensus pattern (24 bp):
AAAAGAAGAAAGGTAGAGTGAAAA
Found at i:97512971 original size:325 final size:326
Alignment explanation
Indices: 97512376--97513024 Score: 1111
Period size: 325 Copynumber: 2.0 Consensus size: 326
97512366 TTACATAAGT
** * *
97512376 ATGGATATGGGCTGGGACATTGCCGTGTGCCTCACATCGAATGTCCACACGGCCTGGGACATGGG
1 ATGGATATGGGCTGGGACACGGCCGTGTGCCTCACATCAAATGTCCACACGGCCTAGGACATGGG
* * *
97512441 TGTATCGCTTGACTGTGTGGATGGCCACACGGGCGTGTGTCCCCTACATCTTTGAAAAATTTCTA
66 CGTATCGCTTGACCGTGTGGATGGCCACACGGGCGTGTGTCCCCTACATATTTGAAAAATTTCTA
* *
97512506 TGTTTTTTGAAAAAAATTATTGAGTACCTGGTTTAGCCCCAACTAATTTTAATGATTATTTTGGA
131 TATTTTTTGAAAAAAATTATTGAGTACCTGGTTTAGCCCCAACTAATTTTAATGATTATTTTAGA
*
97512571 CTTCGAGGGCTTATATTAAGGACCATATGAATGTTTATGAATAATTTGTGAATTGAATGAAATAT
196 CTTCGAGGGCTTATATTAAGGACCATATAAATGTTTATGAATAATTTGTGAATTGAATGAAATAT
* * *
97512636 GTGTATGAAATGTTGATTGATTGAGTTATAAGTCCGGTAATACTCTGTAACCCTGTTCCGGCGAT
261 GTGCATGAAATGTTAATTGATTGAGTTATAAGTCCAGTAATACTCTGTAACCCTGTTCCGGCGAT
97512701 G
326 G
97512702 ATGGATATGGGCTGGGACACGGCCGTGTGCCTCACATCAAATGTCCACACGGCCTAGGACAT-GG
1 ATGGATATGGGCTGGGACACGGCCGTGTGCCTCACATCAAATGTCCACACGGCCTAGGACATGGG
* * *
97512766 CGTATCGCTTGGCCGTGTGGATGGCCACACGGGCGTGTGTCCCCTGCATATTTGAAAATTTTCTA
66 CGTATCGCTTGACCGTGTGGATGGCCACACGGGCGTGTGTCCCCTACATATTTGAAAAATTTCTA
* *
97512831 TATTTTTTGAAAAAATTTCTTGAGTACCTGGTTTAGCCCCAACTAATTTTAATGATTATTTTAGA
131 TATTTTTTGAAAAAAATTATTGAGTACCTGGTTTAGCCCCAACTAATTTTAATGATTATTTTAGA
*
97512896 CTTCGAGGGCTTATATTAAGGACCATATAAATGTTTTTGAATAATTTGTGAATTGAATGAAATAT
196 CTTCGAGGGCTTATATTAAGGACCATATAAATGTTTATGAATAATTTGTGAATTGAATGAAATAT
*
97512961 GTGCATGAAATGTTAATTGATTGAGTTATAAGTCCAGTAATATTCTGTAACCCTGTTCCGGCGA
261 GTGCATGAAATGTTAATTGATTGAGTTATAAGTCCAGTAATACTCTGTAACCCTGTTCCGGCGA
97513025 CGAATATGAG
Statistics
Matches: 303, Mismatches: 20, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
325 245 0.81
326 58 0.19
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (326 bp):
ATGGATATGGGCTGGGACACGGCCGTGTGCCTCACATCAAATGTCCACACGGCCTAGGACATGGG
CGTATCGCTTGACCGTGTGGATGGCCACACGGGCGTGTGTCCCCTACATATTTGAAAAATTTCTA
TATTTTTTGAAAAAAATTATTGAGTACCTGGTTTAGCCCCAACTAATTTTAATGATTATTTTAGA
CTTCGAGGGCTTATATTAAGGACCATATAAATGTTTATGAATAATTTGTGAATTGAATGAAATAT
GTGCATGAAATGTTAATTGATTGAGTTATAAGTCCAGTAATACTCTGTAACCCTGTTCCGGCGAT
G
Found at i:97516687 original size:20 final size:22
Alignment explanation
Indices: 97516650--97516692 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
97516640 AGTTTCGTAG
97516650 ACTAAAAATGTCGTTTTAGTAA
1 ACTAAAAATGTCGTTTTAGTAA
*
97516672 ACTAAAAAT-T-GTTTTATTAA
1 ACTAAAAATGTCGTTTTAGTAA
97516692 A
1 A
97516693 ACAAAGGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 9 0.45
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (22 bp):
ACTAAAAATGTCGTTTTAGTAA
Found at i:97526618 original size:33 final size:33
Alignment explanation
Indices: 97526576--97526699 Score: 230
Period size: 33 Copynumber: 3.8 Consensus size: 33
97526566 TTTCTTCTTG
*
97526576 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
97526609 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
*
97526642 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
97526675 ACATTCCAGCTCCTGTCCAGCAACC
1 ACATTCCAGCTCCTGTCCAGCAACC
97526700 TGAAACAGAG
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.30, C:0.43, G:0.10, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Found at i:97529399 original size:19 final size:20
Alignment explanation
Indices: 97529358--97529409 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
97529348 TATTAATTCT
*
97529358 TTTTACAAATAAATAATAAAA
1 TTTTA-AAATTAATAATAAAA
*
97529379 TTTTAAAATTAA-AATATAA
1 TTTTAAAATTAATAATAAAA
97529398 -TTTAAAATTAAT
1 TTTTAAAATTAAT
97529410 TTTTTTGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 11 0.39
19 6 0.21
20 6 0.21
21 5 0.18
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTTAAAATTAATAATAAAA
Found at i:97532702 original size:56 final size:54
Alignment explanation
Indices: 97532607--97532728 Score: 154
Period size: 56 Copynumber: 2.2 Consensus size: 54
97532597 GTGTATACTC
** * * *
97532607 TACAGAGTATATGCAACAATTGACATAGCCAAAATTTTATAATAGAGGTACATATA
1 TACAGAGTATACCCAACAATTGACATAGACAAAAGTTTATAATAGA--TACACATA
* * *
97532663 TACAGAGTATACCCAACAATTGACATAGATAAAAGTTTATGATAGATACACATG
1 TACAGAGTATACCCAACAATTGACATAGACAAAAGTTTATAATAGATACACATA
97532717 TACAGAGTATAC
1 TACAGAGTATAC
97532729 ACATAAAAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 18 0.31
56 40 0.69
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (54 bp):
TACAGAGTATACCCAACAATTGACATAGACAAAAGTTTATAATAGATACACATA
Found at i:97534060 original size:28 final size:28
Alignment explanation
Indices: 97534020--97534076 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
97534010 TTTCAATCAA
*
97534020 ACACTATTCAGAAACAGGTATAACTGTC
1 ACACTATTCAGAAACAGGTACAACTGTC
97534048 ACACTATTCAGAAACAGGTACAACTGTC
1 ACACTATTCAGAAACAGGTACAACTGTC
97534076 A
1 A
97534077 AAATAAAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (28 bp):
ACACTATTCAGAAACAGGTACAACTGTC
Found at i:97535465 original size:65 final size:65
Alignment explanation
Indices: 97535361--97535495 Score: 252
Period size: 65 Copynumber: 2.1 Consensus size: 65
97535351 GACATGTTCT
97535361 TAAATAATTATACAAAAGCCCAATAAGGAATTGCAAGAAGAAGACGAAGAAGAAACCCCATATGA
1 TAAATAATTATACAAAAGCCCAATAAGGAATTGCAAGAAGAAGACGAAGAAGAAACCCCATATGA
*
97535426 TAAATAATTATACAAAAGCCCAATAAGGAATTGCAAGAAGAAGAGGAAGAAGAAACCCCATATGA
1 TAAATAATTATACAAAAGCCCAATAAGGAATTGCAAGAAGAAGACGAAGAAGAAACCCCATATGA
*
97535491 AAAAT
1 TAAAT
97535496 TTTGACAATA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.16
Consensus pattern (65 bp):
TAAATAATTATACAAAAGCCCAATAAGGAATTGCAAGAAGAAGACGAAGAAGAAACCCCATATGA
Found at i:97544713 original size:110 final size:110
Alignment explanation
Indices: 97544519--97544739 Score: 316
Period size: 110 Copynumber: 2.0 Consensus size: 110
97544509 TTGAGACCAT
* * * * * * *
97544519 GCTCATAGTGTGCAGTTTTAAAGGAGCTGATTATGAATTCAGTGGGGACCACGATCTCTGTTCCA
1 GCTCATAGTATGCAGTTTTAAAAGAGATGATTAGGAATTCAGTGGAGACCACGACCTCTCTTCCA
* *
97544584 AATATTAGATCAAAAGGAGTTTCCATTGTTCCAGTATGTGAAGTG
66 AACATTAGATCAAAAGGAGTTTCCACTGTTCCAGTATGTGAAGTG
*
97544629 GCTCATAGTATGCAGTTTTAAAAGAGATGATTAGGATTTCAGTGGAGACCACGACCTCTCTTCCA
1 GCTCATAGTATGCAGTTTTAAAAGAGATGATTAGGAATTCAGTGGAGACCACGACCTCTCTTCCA
* * * *
97544694 AACATTAGATTAAAGGGAGTTTCCCCTGTTCTAGTATGTGAAGTG
66 AACATTAGATCAAAAGGAGTTTCCACTGTTCCAGTATGTGAAGTG
97544739 G
1 G
97544740 TTCAAAAGGC
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
110 97 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (110 bp):
GCTCATAGTATGCAGTTTTAAAAGAGATGATTAGGAATTCAGTGGAGACCACGACCTCTCTTCCA
AACATTAGATCAAAAGGAGTTTCCACTGTTCCAGTATGTGAAGTG
Found at i:97548356 original size:11 final size:11
Alignment explanation
Indices: 97548331--97548364 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
97548321 AGTCTGTTTT
97548331 TTATTAAATAAA
1 TTATTAAA-AAA
97548343 TTATTAAAAAA
1 TTATTAAAAAA
97548354 TTA-TAAAAAA
1 TTATTAAAAAA
97548364 T
1 T
97548365 AAAAAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 6 0.27
12 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TTATTAAAAAA
Found at i:97548361 original size:9 final size:9
Alignment explanation
Indices: 97548333--97548381 Score: 55
Period size: 9 Copynumber: 5.2 Consensus size: 9
97548323 TCTGTTTTTT
*
97548333 ATTAAATAA
1 ATTAAAAAA
97548342 ATTATTAAAAA
1 ATTA--AAAAA
97548353 ATTATAAAAA
1 ATTA-AAAAA
97548363 A-TAAAAAA
1 ATTAAAAAA
97548371 ATTAAAAAA
1 ATTAAAAAA
97548380 AT
1 AT
97548382 AGAGAAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
8 6 0.17
9 15 0.42
10 7 0.19
11 8 0.22
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
ATTAAAAAA
Found at i:97548391 original size:18 final size:18
Alignment explanation
Indices: 97548348--97548382 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
97548338 ATAAATTATT
97548348 AAAAAATTATAAAAAATA
1 AAAAAATTATAAAAAATA
97548366 AAAAAATTA-AAAAAATA
1 AAAAAATTATAAAAAATA
97548383 GAGAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAAATTATAAAAAATA
Found at i:97549620 original size:17 final size:17
Alignment explanation
Indices: 97549598--97549632 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97549588 ATGTAAGATA
*
97549598 CTCAATTGATACGAGTT
1 CTCAATTAATACGAGTT
97549615 CTCAATTAATACGAGTT
1 CTCAATTAATACGAGTT
97549632 C
1 C
97549633 AAACCGCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (17 bp):
CTCAATTAATACGAGTT
Found at i:97560584 original size:123 final size:123
Alignment explanation
Indices: 97560397--97560643 Score: 341
Period size: 123 Copynumber: 2.0 Consensus size: 123
97560387 CCACCCCGTC
* * * * *
97560397 CACCGCCTCTGCCTCTTCCACTAGCTGATCCTGTTGATGCACCCCTACCACCACGACCCCTTCCA
1 CACCACCTCTGCCTCTTCCACCAGCTGAGCCTGTTAATGCACCCCTACCACCACGAACCCTTCCA
* * * *
97560462 CCAGACTTCACAGGAGACTCCAAATCTTTAATATCCTCTTCATCACTTTCGTCAATAT
66 CCAGACTTCACAGGAGACTCCAAATCTTTAACATCATCTTCATCACTTCCATCAATAT
* * * * *
97560520 CACCACCTCTGCCTCTTCCGCCAGCTGGGCCTTTTAATGCACCCCTGCCACCACGAACCTTTCCA
1 CACCACCTCTGCCTCTTCCACCAGCTGAGCCTGTTAATGCACCCCTACCACCACGAACCCTTCCA
* * *
97560585 CCTGACTTTACAGGAGACTTCAAATCTTTAACATCATCTTCATCACTTCCATCAATAT
66 CCAGACTTCACAGGAGACTCCAAATCTTTAACATCATCTTCATCACTTCCATCAATAT
97560643 C
1 C
97560644 TACAGCTTTT
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
123 107 1.00
ACGTcount: A:0.23, C:0.38, G:0.11, T:0.28
Consensus pattern (123 bp):
CACCACCTCTGCCTCTTCCACCAGCTGAGCCTGTTAATGCACCCCTACCACCACGAACCCTTCCA
CCAGACTTCACAGGAGACTCCAAATCTTTAACATCATCTTCATCACTTCCATCAATAT
Found at i:97563429 original size:7 final size:7
Alignment explanation
Indices: 97563419--97563444 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
97563409 AAATAAAACA
97563419 AAATTCT
1 AAATTCT
97563426 AAATTCT
1 AAATTCT
97563433 AAATTCT
1 AAATTCT
97563440 AAATT
1 AAATT
97563445 GAAATCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTCT
Found at i:97572257 original size:105 final size:105
Alignment explanation
Indices: 97572075--97572263 Score: 342
Period size: 105 Copynumber: 1.8 Consensus size: 105
97572065 AGGAAGGTTG
*
97572075 CAGATTGTTTTGGGGCATGGATGACGTGGACGAATATTCCTTGCCATTCTTATTGCTTTCATCTG
1 CAGATTGTTTTGGGGCATGGATGACGTGGACGAATATTCCTTGCCATTCTCATTGCTTTCATCTG
97572140 CTGCTCTCTTGTTGGCATCATCAGTCTGATTTTTCTTTTC
66 CTGCTCTCTTGTTGGCATCATCAGTCTGATTTTTCTTTTC
* *
97572180 CAGATTGTTTTGGGGCATGGATGGCGTGGACGAATATTTCTTGCCATTCTCATTGCTTTCATCTG
1 CAGATTGTTTTGGGGCATGGATGACGTGGACGAATATTCCTTGCCATTCTCATTGCTTTCATCTG
*
97572245 CTGCTTTCTTGTTGGCATC
66 CTGCTCTCTTGTTGGCATC
97572264 CTTGCCATTC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 80 1.00
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (105 bp):
CAGATTGTTTTGGGGCATGGATGACGTGGACGAATATTCCTTGCCATTCTCATTGCTTTCATCTG
CTGCTCTCTTGTTGGCATCATCAGTCTGATTTTTCTTTTC
Found at i:97572263 original size:21 final size:21
Alignment explanation
Indices: 97572239--97572308 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
97572229 TCATTGCTTT
97572239 CATCTGCTGCTTTCTTGTTGG
1 CATCTGCTGCTTTCTTGTTGG
*
97572260 CATC--CTTGCCATTCTCATTGCTT-T
1 CATCTGC-TG-C-TT-TC-TTG-TTGG
97572284 CATCTGCTGCTTTCTTGTTGG
1 CATCTGCTGCTTTCTTGTTGG
97572305 CATC
1 CATC
97572309 ATCAGTTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
19 1 0.03
20 4 0.11
21 12 0.32
22 4 0.11
23 4 0.11
24 8 0.21
25 4 0.11
26 1 0.03
ACGTcount: A:0.09, C:0.29, G:0.17, T:0.46
Consensus pattern (21 bp):
CATCTGCTGCTTTCTTGTTGG
Found at i:97572283 original size:45 final size:45
Alignment explanation
Indices: 97572219--97572308 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
97572209 ACGAATATTT
97572219 CTTGCCATTCTCATTGCTTTCATCTGCTGCTTTCTTGTTGGCATC
1 CTTGCCATTCTCATTGCTTTCATCTGCTGCTTTCTTGTTGGCATC
97572264 CTTGCCATTCTCATTGCTTTCATCTGCTGCTTTCTTGTTGGCATC
1 CTTGCCATTCTCATTGCTTTCATCTGCTGCTTTCTTGTTGGCATC
97572309 ATCAGTTTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.09, C:0.29, G:0.16, T:0.47
Consensus pattern (45 bp):
CTTGCCATTCTCATTGCTTTCATCTGCTGCTTTCTTGTTGGCATC
Found at i:97572287 original size:24 final size:24
Alignment explanation
Indices: 97572219--97572287 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 24
97572209 ACGAATATTT
97572219 CTTGCCATTCTCATTGCTTTCAT-
1 CTTGCCATTCTCATTGCTTTCATC
*
97572242 C-TGCTGC-TT-TC-TTG-TTGGCATC
1 CTTGC--CATTCTCATTGCTT-TCATC
97572264 CTTGCCATTCTCATTGCTTTCATC
1 CTTGCCATTCTCATTGCTTTCATC
97572288 TGCTGCTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 17
0.65 0.04 0.31
Matches are distributed among these distances:
20 2 0.06
21 7 0.20
22 8 0.23
23 8 0.23
24 8 0.23
25 2 0.06
ACGTcount: A:0.10, C:0.30, G:0.13, T:0.46
Consensus pattern (24 bp):
CTTGCCATTCTCATTGCTTTCATC
Found at i:97572298 original size:24 final size:24
Alignment explanation
Indices: 97572226--97572298 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
97572216 TTTCTTGCCA
97572226 TTCTCATTGCTTTCATCTGCTGCT
1 TTCTCATTGCTTTCATCTGCTGCT
** * * *
97572250 TTCTTGTTGGC-ATCCT-TGC--CA
1 TTCTCATT-GCTTTCATCTGCTGCT
97572271 TTCTCATTGCTTTCATCTGCTGCT
1 TTCTCATTGCTTTCATCTGCTGCT
97572295 TTCT
1 TTCT
97572299 TGTTGGCATC
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 10 0.29
22 3 0.09
23 3 0.09
24 14 0.41
25 2 0.06
ACGTcount: A:0.08, C:0.29, G:0.14, T:0.49
Consensus pattern (24 bp):
TTCTCATTGCTTTCATCTGCTGCT
Found at i:97572310 original size:24 final size:24
Alignment explanation
Indices: 97572238--97572311 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
97572228 CTCATTGCTT
97572238 TCATCTGCTGCTTTCTTGTTGGCA
1 TCATCTGCTGCTTTCTTGTTGGCA
* * ** *
97572262 TCCT-TGC--CATTCTCATT-GCTT
1 TCATCTGCTGCTTTCTTGTTGGC-A
97572283 TCATCTGCTGCTTTCTTGTTGGCA
1 TCATCTGCTGCTTTCTTGTTGGCA
97572307 TCATC
1 TCATC
97572312 AGTTTGATCT
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 2 0.06
21 10 0.29
22 3 0.09
23 3 0.09
24 15 0.43
25 2 0.06
ACGTcount: A:0.09, C:0.28, G:0.16, T:0.46
Consensus pattern (24 bp):
TCATCTGCTGCTTTCTTGTTGGCA
Found at i:97578432 original size:259 final size:259
Alignment explanation
Indices: 97577973--97578491 Score: 966
Period size: 259 Copynumber: 2.0 Consensus size: 259
97577963 CATCTCAGGG
* * *
97577973 TGCTTGGGAGCAAAAGAGAATTTCTGGCTCTACACAAGGGTTACTTATTCATGATCTTTGTATTT
1 TGCTTGGGACCAAAACAGAATTTCTGGCTCTACACAAGGGTTACTTATTCAGGATCTTTGTATTT
97578038 CTCCCTTTGAGGGTGTTTTTTCCTCTTTCTGTCTAGAGAGTACCATTCAGTGGATATTTTCTTTT
66 CTCCCTTTGAGGGTGTTTTTTCCTCTTTCTGTCTAGAGAGTACCATTCAGTGGATATTTTCTTTT
97578103 CTTAGCAGGTTTTAAAGCGCAGGAGTTCAGTATTAGACAATGATATAGGATCAGTTGATCAGCAT
131 CTTAGCAGGTTTTAAAGCGCAGGAGTTCAGTATTAGACAATGATATAGGATCAGTTGATCAGCAT
*
97578168 GATATAGGTTTTAAAGCGCATGATATTGGATAGAGGAGGGATATCCATAAGCTTTACTTTTGGA
196 GATATAGGTTTTAAAGCGCATGATATTGGATAGAGGAGGGATATCCATAAGCTTCACTTTTGGA
*
97578232 TGCTTGGGACCAAAACAGAATTTCTGGCTCTTCACAAGGGTTACTTATTCAGGATCTTTGTATTT
1 TGCTTGGGACCAAAACAGAATTTCTGGCTCTACACAAGGGTTACTTATTCAGGATCTTTGTATTT
*
97578297 CTTCCTTTGAGGGTGTTTTTTCCTCTTTCTGTCTAGAGAGTACCATTCAGTGGATATTTTCTTTT
66 CTCCCTTTGAGGGTGTTTTTTCCTCTTTCTGTCTAGAGAGTACCATTCAGTGGATATTTTCTTTT
*
97578362 CTTTGCAGGTTTTAAAGCGCAGGAGTTCAGTATTAGACAATGATATAGGATCAGTTGATCAGCAT
131 CTTAGCAGGTTTTAAAGCGCAGGAGTTCAGTATTAGACAATGATATAGGATCAGTTGATCAGCAT
*
97578427 GATATAGGTTTTAAAGCGCATGATATTGGATTGAGGAGGGATATCCATAAGCTTCACTTTTGGA
196 GATATAGGTTTTAAAGCGCATGATATTGGATAGAGGAGGGATATCCATAAGCTTCACTTTTGGA
97578491 T
1 T
97578492 CAGTTGGTTG
Statistics
Matches: 252, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
259 252 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (259 bp):
TGCTTGGGACCAAAACAGAATTTCTGGCTCTACACAAGGGTTACTTATTCAGGATCTTTGTATTT
CTCCCTTTGAGGGTGTTTTTTCCTCTTTCTGTCTAGAGAGTACCATTCAGTGGATATTTTCTTTT
CTTAGCAGGTTTTAAAGCGCAGGAGTTCAGTATTAGACAATGATATAGGATCAGTTGATCAGCAT
GATATAGGTTTTAAAGCGCATGATATTGGATAGAGGAGGGATATCCATAAGCTTCACTTTTGGA
Found at i:97578605 original size:4 final size:4
Alignment explanation
Indices: 97578596--97578620 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
97578586 AACATTCCCC
97578596 CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT C
97578621 AGCTGTGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
CTTT
Found at i:97579383 original size:42 final size:42
Alignment explanation
Indices: 97579324--97579489 Score: 185
Period size: 42 Copynumber: 4.0 Consensus size: 42
97579314 TTCCCCAGTG
* * **
97579324 ACAAGCACAAGCAATGGTATCTTCGGTGGTACATCTGTAGGT
1 ACAAGCACAGGCAATGGTATCTTCGGTGGTACATCTGCAACT
*
97579366 ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAACT
1 ACAAGCACAGGCAATGGTATCTTCGGTGGTACATCTGCAACT
* * * * *
97579408 ACAAGCAC-GGCCACTGGTTTATTTGGCGGTACATCTGCAACT
1 ACAAGCACAGG-CAATGGTATCTTCGGTGGTACATCTGCAACT
* *
97579450 ACAAGCACTGGC-ATGGCATC-TCTGGTGGTACATCTGCAAC
1 ACAAGCACAGGCAATGGTATCTTC-GGTGGTACATCTGCAAC
97579490 AAGCACAGGT
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.01
41 22 0.21
42 81 0.76
43 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (42 bp):
ACAAGCACAGGCAATGGTATCTTCGGTGGTACATCTGCAACT
Found at i:97581721 original size:6 final size:6
Alignment explanation
Indices: 97581710--97581740 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
97581700 TTCTCAGACT
97581710 ACCATC ACCATC ACCATC ACCATC ACCATC A
1 ACCATC ACCATC ACCATC ACCATC ACCATC A
97581741 TCTCTGGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
ACCATC
Found at i:97583469 original size:42 final size:42
Alignment explanation
Indices: 97583378--97583574 Score: 231
Period size: 42 Copynumber: 4.8 Consensus size: 42
97583368 TGGCAAAGAC
* * * *
97583378 GTACCACCAAAAATACTACTACCTGTGCTTGT---TGCAGAT
1 GTACCACCAAAGATACCATTGCCTGTGCTTGTAGCTGCAGAT
* * *
97583417 GTACCACCAAAGATGCCATTGCCTGTGCTTGTAGCTGCTGAC
1 GTACCACCAAAGATACCATTGCCTGTGCTTGTAGCTGCAGAT
* * * *
97583459 GTACCACCAAATAAACCAGTGGCC-GTGCTTGTAGTTGCAGAT
1 GTACCACCAAAGATACCA-TTGCCTGTGCTTGTAGCTGCAGAT
*
97583501 GTACCACCAAAGATACCATTGCCTGTGCTTGTACCTGCAGAT
1 GTACCACCAAAGATACCATTGCCTGTGCTTGTAGCTGCAGAT
* *
97583543 GTACCACCGAAGATACCATTGCTTGTGCTTGT
1 GTACCACCAAAGATACCATTGCCTGTGCTTGT
97583575 CACTGGGGAA
Statistics
Matches: 132, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
39 27 0.20
41 4 0.03
42 97 0.73
43 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (42 bp):
GTACCACCAAAGATACCATTGCCTGTGCTTGTAGCTGCAGAT
Found at i:97590776 original size:14 final size:14
Alignment explanation
Indices: 97590754--97590814 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 14
97590744 ACTCATAACT
97590754 TATATTA-TATACA
1 TATATTATTATACA
97590767 TATAATTA-TATACA
1 TAT-ATTATTATACA
*
97590781 TTTTATTATTATAACA
1 -TATATTATTAT-ACA
97590797 TATATATATTATACA
1 TATAT-TATTATACA
97590812 TAT
1 TAT
97590815 TAAATAAGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
13 3 0.07
14 14 0.34
15 15 0.37
16 9 0.22
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (14 bp):
TATATTATTATACA
Found at i:97599505 original size:42 final size:42
Alignment explanation
Indices: 97599414--97599550 Score: 132
Period size: 42 Copynumber: 3.3 Consensus size: 42
97599404 AATATTACTA
* * * *
97599414 CCTGTGCTTGTAGCTGCT-GATGTACCACCAAATAAACCAGTG
1 CCTGTGCTTGTAGTTG-TAGATGTACCACCAAAGATACCATTG
* * *
97599456 CCCGTGCTTGTAGTTGTAGATGTAACACCAAAGATAGCATTG
1 CCTGTGCTTGTAGTTGTAGATGTACCACCAAAGATACCATTG
* * * * * *
97599498 CCTGTGCTTGCACTTGCAGAGGTACCACCGAAGGTACCATTG
1 CCTGTGCTTGTAGTTGTAGATGTACCACCAAAGATACCATTG
*
97599540 CTTGTGCTTGT
1 CCTGTGCTTGT
97599551 CACTGGGGAA
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 1 0.01
42 75 0.99
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (42 bp):
CCTGTGCTTGTAGTTGTAGATGTACCACCAAAGATACCATTG
Found at i:97601527 original size:116 final size:116
Alignment explanation
Indices: 97601323--97601557 Score: 461
Period size: 116 Copynumber: 2.0 Consensus size: 116
97601313 TATAAGAACT
97601323 CCTGACCAGGTATCCTTTTACACCCTGCCAATTAACTAACTACTAGCCTACTCCATTCAACCAGA
1 CCTGACCAGGTATCCTTTTACACCCTGCCAATTAACTAACTACTAGCCTACTCCATTCAACCAGA
97601388 TATTAGTGACCCTATGCACAAGGGTTAGATTCACCACCAAAATCCCCAACC
66 TATTAGTGACCCTATGCACAAGGGTTAGATTCACCACCAAAATCCCCAACC
97601439 CCTGACCAGGTATCCTTTTACACCCTGCCAATTAACTAACTACTAGCCTACTCCATTCAACCAGA
1 CCTGACCAGGTATCCTTTTACACCCTGCCAATTAACTAACTACTAGCCTACTCCATTCAACCAGA
*
97601504 TATTAGTGACCCTATGCACAAGGGTTAGATTCACCTCCAAAATCCCCAACC
66 TATTAGTGACCCTATGCACAAGGGTTAGATTCACCACCAAAATCCCCAACC
97601555 CCT
1 CCT
97601558 TCCATCCTTT
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 118 1.00
ACGTcount: A:0.30, C:0.34, G:0.11, T:0.25
Consensus pattern (116 bp):
CCTGACCAGGTATCCTTTTACACCCTGCCAATTAACTAACTACTAGCCTACTCCATTCAACCAGA
TATTAGTGACCCTATGCACAAGGGTTAGATTCACCACCAAAATCCCCAACC
Found at i:97611611 original size:17 final size:16
Alignment explanation
Indices: 97611586--97611620 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
97611576 ATTTTATTAA
97611586 ATAAAAAATTCAAAAAT
1 ATAAAAAA-TCAAAAAT
*
97611603 ATAATAAATCAAAAAT
1 ATAAAAAATCAAAAAT
97611619 AT
1 AT
97611621 TTAAAACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAAAAATCAAAAAT
Found at i:97611655 original size:21 final size:19
Alignment explanation
Indices: 97611613--97611670 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 19
97611603 ATAATAAATC
97611613 AAAAATATTTAAAACATAAAA
1 AAAAATA-TTAAAACA-AAAA
*
97611634 ACAAATATTAAAACAAATAA
1 AAAAATATTAAAACAAA-AA
*
97611654 AAATAATACTAAAACAA
1 AAA-AATATTAAAACAA
97611671 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 2 0.06
20 12 0.38
21 18 0.56
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.21
Consensus pattern (19 bp):
AAAAATATTAAAACAAAAA
Found at i:97614699 original size:30 final size:30
Alignment explanation
Indices: 97614663--97614723 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
97614653 TAAAATGTGC
97614663 TTCATTTCTATGAGTGATGATCGGATTTTG
1 TTCATTTCTATGAGTGATGATCGGATTTTG
97614693 TTCATTTCTATGAGTGATGATCGGATTTTG
1 TTCATTTCTATGAGTGATGATCGGATTTTG
97614723 T
1 T
97614724 GCTCGAGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.10, G:0.23, T:0.48
Consensus pattern (30 bp):
TTCATTTCTATGAGTGATGATCGGATTTTG
Found at i:97618072 original size:4 final size:4
Alignment explanation
Indices: 97618063--97618092 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
97618053 TTGGAGGTAT
97618063 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
97618093 GGGAAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:97620538 original size:2 final size:2
Alignment explanation
Indices: 97620533--97620558 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97620523 AGTTTTTTTT
97620533 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
97620559 AGTTTATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97626703 original size:26 final size:25
Alignment explanation
Indices: 97626674--97626729 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
97626664 GCTATGCTCA
*
97626674 AATTTAAAAT-TTAATTTCTATATTTT
1 AATTTAAAATATT-ATTT-GATATTTT
**
97626700 AATTTTTAATATTATTTGATATTTT
1 AATTTAAAATATTATTTGATATTTT
97626725 AATTT
1 AATTT
97626730 TTTAATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 12 0.46
26 12 0.46
27 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
AATTTAAAATATTATTTGATATTTT
Found at i:97626724 original size:18 final size:16
Alignment explanation
Indices: 97626696--97626745 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
97626686 AATTTCTATA
97626696 TTTTAAT-TTTTAATAT
1 TTTTAATATTTTAAT-T
*
97626712 TATTTGATATTTTAATT
1 T-TTTAATATTTTAATT
97626729 TTTTAATATATTTAATT
1 TTTTAATAT-TTTAATT
97626746 AATATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 8 0.28
17 14 0.48
18 7 0.24
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (16 bp):
TTTTAATATTTTAATT
Found at i:97626726 original size:25 final size:25
Alignment explanation
Indices: 97626693--97626741 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
97626683 TTTAATTTCT
97626693 ATATTTTAA-TTTTTAATATTATTTG
1 ATATTTTAATTTTTTAATA-TATTTG
97626718 ATATTTTAATTTTTTAATATATTT
1 ATATTTTAATTTTTTAATATATTT
97626742 AATTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
ATATTTTAATTTTTTAATATATTTG
Found at i:97627021 original size:17 final size:15
Alignment explanation
Indices: 97626999--97627037 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
97626989 TATAAAAATA
97626999 AAATATTTTAATATTTT
1 AAATATTTT-ATA-TTT
97627016 AAATATTTTATATTT
1 AAATATTTTATATTT
97627031 AAATATT
1 AAATATT
97627038 ATTTTTTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.45
16 3 0.14
17 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AAATATTTTATATTT
Found at i:97631124 original size:6 final size:6
Alignment explanation
Indices: 97631115--97631140 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97631105 CAGCATCGGA
97631115 ATGACC ATGACC ATGACC ATGACC AT
1 ATGACC ATGACC ATGACC ATGACC AT
97631141 AATCAGGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.31, G:0.15, T:0.19
Consensus pattern (6 bp):
ATGACC
Found at i:97642932 original size:10 final size:10
Alignment explanation
Indices: 97642890--97642934 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
97642880 AAATTCAAAG
97642890 AAATATATAA
1 AAATATATAA
*
97642900 AATTATATAA
1 AAATATATAA
* * *
97642910 ATATTTTTAA
1 AAATATATAA
97642920 AAATATATAA
1 AAATATATAA
97642930 AAATA
1 AAATA
97642935 AAAAATATTG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATATAA
Found at i:97643377 original size:19 final size:21
Alignment explanation
Indices: 97643332--97643377 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
97643322 TTAAAATATT
97643332 TATTTTAAATTTATTATTATA
1 TATTTTAAATTTATTATTATA
* *
97643353 TTTTTTAAATTT-TT-TTATG
1 TATTTTAAATTTATTATTATA
97643372 TATTTT
1 TATTTT
97643378 TAGATATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 9 0.41
20 2 0.09
21 11 0.50
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
TATTTTAAATTTATTATTATA
Found at i:97652713 original size:117 final size:117
Alignment explanation
Indices: 97652582--97652825 Score: 443
Period size: 117 Copynumber: 2.1 Consensus size: 117
97652572 GGTGGAAATA
*
97652582 ATGCAGGTGATCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
1 ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
*
97652647 GAAGAGAGTGGTAGTGGTGGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
66 GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
*
97652699 ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCACAGTTGGGGTGGCAAG
1 ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
* *
97652764 GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTGGAAACT
66 GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
97652816 ATGCAGGTGG
1 ATGCAGGTGG
97652826 ATATGGCCAC
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 122 1.00
ACGTcount: A:0.26, C:0.09, G:0.42, T:0.23
Consensus pattern (117 bp):
ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
Found at i:97653654 original size:26 final size:28
Alignment explanation
Indices: 97653592--97653654 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
97653582 GTGGGACTCT
* * *
97653592 TTAATTATTTTAAAAATTTTAAAAAACC
1 TTAAATATTTAAAAAATATTAAAAAACC
*
97653620 TTTAA-ATTTAAAAAATATTAAAAAA-C
1 TTAAATATTTAAAAAATATTAAAAAACC
97653646 -TAAATATTT
1 TTAAATATTT
97653655 TTTAAAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
25 3 0.10
26 5 0.17
27 18 0.62
28 3 0.10
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (28 bp):
TTAAATATTTAAAAAATATTAAAAAACC
Found at i:97654342 original size:17 final size:19
Alignment explanation
Indices: 97654309--97654445 Score: 69
Period size: 17 Copynumber: 7.3 Consensus size: 19
97654299 TATATTATTA
97654309 TATTAAATTATTTAAATAT
1 TATTAAATTATTTAAATAT
97654328 TATTAAA-TA-TTAAATAT
1 TATTAAATTATTTAAATAT
*
97654345 TATT--A-TATTT-AATTT
1 TATTAAATTATTTAAATAT
* * *
97654360 TA-AAAAATATTTATATAT
1 TATTAAATTATTTAAATAT
97654378 TA-TAAATT-TTATAAATAAT
1 TATTAAATTATT-TAAAT-AT
* *
97654397 T-TGTATTAATTACTTAAAAAATT
1 TAT-TA--AATTA-TTTAAATA-T
97654420 ATATTAAATTATTTAAATAT
1 -TATTAAATTATTTAAATAT
*
97654440 AATTAA
1 TATTAA
97654446 TTTAACTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 32
0.67 0.09 0.24
Matches are distributed among these distances:
15 9 0.10
16 3 0.03
17 19 0.21
18 15 0.17
19 15 0.17
20 3 0.03
21 6 0.07
22 10 0.11
23 4 0.04
24 5 0.06
25 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (19 bp):
TATTAAATTATTTAAATAT
Found at i:97654367 original size:25 final size:27
Alignment explanation
Indices: 97654339--97654388 Score: 70
Period size: 25 Copynumber: 1.9 Consensus size: 27
97654329 ATTAAATATT
97654339 AAATA-TTATTATATT-T-AATTTTAAA
1 AAATATTTA-TATATTATAAATTTTAAA
97654364 AAATATTTATATATTATAAATTTTA
1 AAATATTTATATATTATAAATTTTA
97654389 TAAATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 11 0.50
26 4 0.18
27 7 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
AAATATTTATATATTATAAATTTTAAA
Found at i:97654414 original size:22 final size:23
Alignment explanation
Indices: 97654389--97654444 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
97654379 ATAAATTTTA
* *
97654389 TAAATAATTTGTATT-AATTACT
1 TAAATAAATTATATTAAATTACT
*
97654411 TAAA-AAATTATATTAAATTATT
1 TAAATAAATTATATTAAATTACT
97654433 TAAATATAATTA
1 TAAATA-AATTA
97654445 ATTTAACTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 8 0.29
22 14 0.50
23 1 0.04
24 5 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
TAAATAAATTATATTAAATTACT
Found at i:97658008 original size:48 final size:48
Alignment explanation
Indices: 97657936--97658030 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
97657926 GAGAATTATG
* *
97657936 AAGACATCTTATTAAATCATAATAAACATATAAAACAAAATATATTGT
1 AAGACATCTTATTAAATCAAAATAAACAGATAAAACAAAATATATTGT
* * *
97657984 AAGACATCTTATTAAATCAAAATAAATAGGTAAAACAGAATATATTG
1 AAGACATCTTATTAAATCAAAATAAACAGATAAAACAAAATATATTG
97658031 CCTCGACTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.29
Consensus pattern (48 bp):
AAGACATCTTATTAAATCAAAATAAACAGATAAAACAAAATATATTGT
Found at i:97662666 original size:6 final size:6
Alignment explanation
Indices: 97662646--97662679 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
97662636 ATATTTTGAT
**
97662646 AAATTA AAAACA AAATTA AAATTA AAATTA AAAT
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAAT
97662680 ACTAATAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (6 bp):
AAATTA
Found at i:97666473 original size:19 final size:20
Alignment explanation
Indices: 97666451--97666489 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
97666441 CTACAGGCAG
*
97666451 ATTTTGATTCTTTTT-TTAA
1 ATTTAGATTCTTTTTATTAA
*
97666470 ATTTAGCTTCTTTTTATTAA
1 ATTTAGATTCTTTTTATTAA
97666490 TGTATTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTTAGATTCTTTTTATTAA
Found at i:97668357 original size:16 final size:16
Alignment explanation
Indices: 97668314--97668349 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
97668304 GTTATTGGAT
*
97668314 TAGAGGGGTAATGAAA
1 TAGAGGTGTAATGAAA
97668330 TAGAGGTGTAATGAAA
1 TAGAGGTGTAATGAAA
97668346 TAGA
1 TAGA
97668350 TTTGTAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (16 bp):
TAGAGGTGTAATGAAA
Found at i:97668613 original size:18 final size:18
Alignment explanation
Indices: 97668590--97668723 Score: 81
Period size: 18 Copynumber: 7.9 Consensus size: 18
97668580 TTATTATTAA
97668590 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
97668608 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
*
97668625 ATATGAATTTACT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * *
97668643 -TATAATAT-ATAATATT
1 ATATAATTTAATAAAAAT
* * *
97668659 ATAAAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
97668678 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
*
97668690 ATATAATTTAACAAAAAT
1 ATATAATTTAATAAAAAT
*
97668708 ATATATTTTAATAAAA
1 ATATAATTTAATAAAA
97668724 TTCTAAGTAT
Statistics
Matches: 87, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
12 1 0.01
13 5 0.06
14 2 0.02
15 3 0.03
16 8 0.09
17 22 0.25
18 41 0.47
19 5 0.06
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:97668661 original size:15 final size:15
Alignment explanation
Indices: 97668641--97668696 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
97668631 ATTTACTAAA
*
97668641 ATTATAATATATAAT
1 ATTATAAAATATAAT
97668656 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
97668669 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
97668682 ATTATTAAATATAAT
1 ATTATAAAATATAAT
97668697 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:97668691 original size:26 final size:25
Alignment explanation
Indices: 97668651--97668709 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
97668641 ATTATAATAT
97668651 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
97668676 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
97668703 AAAATAT
1 ATAATAT
97668710 ATATTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 4 0.13
26 22 0.73
27 4 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:97668709 original size:59 final size:60
Alignment explanation
Indices: 97668646--97668844 Score: 214
Period size: 59 Copynumber: 3.4 Consensus size: 60
97668636 CTAAAATTAT
97668646 AATATATAATATT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAATATTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
* * * * * * ** *
97668705 AATATAT-ATTTTAATAAAATTCTAAGTATT-AAAT-ATTCTTATATGAATTTACTAAAATC-AT
1 AATATATAATATTAATAAAA-TATAA-T-TTAAAATAATTATTAT-TAAATATAATTTAA-CAAA
*
97668766 AATATATAATACT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAATATTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
97668825 AATATATAAT-TTAATAAAAT
1 AATATATAATATTAATAAAAT
97668845 TCTTAGTATT
Statistics
Matches: 109, Mismatches: 20, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
58 8 0.07
59 45 0.41
60 22 0.20
61 28 0.26
62 6 0.06
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (60 bp):
AATATATAATATTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
Found at i:97668769 original size:120 final size:120
Alignment explanation
Indices: 97668624--97668866 Score: 450
Period size: 120 Copynumber: 2.0 Consensus size: 120
97668614 TTTAATAAAA
* *
97668624 TATATGAATTTACTAAAATTATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
*
97668689 AATATAATTTAACAAAAATATATATTTTAATAAAATTCTAAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTAAGTATTAAATATTCT
97668744 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
*
97668809 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTAAGTATTAAATATTCT
97668864 TAT
1 TAT
97668867 GATTGTATCA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTAAGTATTAAATATTCT
Found at i:97677733 original size:21 final size:21
Alignment explanation
Indices: 97677707--97677747 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97677697 ATCTGCTCAA
* *
97677707 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
97677728 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
97677748 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:97679458 original size:31 final size:31
Alignment explanation
Indices: 97679423--97679483 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
97679413 TCAGGAAGTG
97679423 ACTCCAACAGCATCAAAGCCAAATCTTCATA
1 ACTCCAACAGCATCAAAGCCAAATCTTCATA
97679454 ACTCCAACAGCATCAAAGCCAAATCTTCAT
1 ACTCCAACAGCATCAAAGCCAAATCTTCAT
97679484 CTTTGAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.33, G:0.07, T:0.20
Consensus pattern (31 bp):
ACTCCAACAGCATCAAAGCCAAATCTTCATA
Found at i:97683512 original size:210 final size:210
Alignment explanation
Indices: 97683150--97685602 Score: 4329
Period size: 210 Copynumber: 11.7 Consensus size: 210
97683140 AATATTTGGA
* *
97683150 GTTGTCCTAATTTAAGTTCAATTCCAGAGTTGAAAGGATTTTCCTCTCTCCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* **
97683215 GAAAGCTGCGCTGAGTTGGAAGTTATTT-CGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
66 GAAAGGTGCAATGAGTTGGAAGTT-TTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
* *** * * *
97683279 GCATTCTTTTTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTAGCTGCACTTGTCTCAAA
130 ACATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
*
97683344 GAATTAGGTCTATATG
195 GAATTAGATCTATATG
97683360 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* *
97683425 GGAAGGTGCAATGAGTTGGAAGTTATTT-CGATAACCGGGGGACGTTCATCTCTTGAAAAGCTTA
66 GAAAGGTGCAATGAGTTGGAAGTT-TTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
97683489 ACATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
130 ACATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
97683554 GAATTAGATCTATATG
195 GAATTAGATCTATATG
97683570 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* *
97683635 GGAAGGTGCAATGAGTTGGAAGTTTTTCCGATGACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
97683700 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
97683765 AATTAGATCTATATG
196 AATTAGATCTATATG
97683780 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* *
97683845 GGAAGGTGCAATGAGTTGGAAGTTTTTCCGATGACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
97683910 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
97683975 AATTAGATCTATATG
196 AATTAGATCTATATG
97683990 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
*
97684055 GAAAGGTTCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
* * *
97684120 CATTCACCTTTGCGAGAAATTAAGCAAGATTGAAGACGGATTATCTAGCTGCACTTGTCTCAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
*
97684185 AATTAGATCTATATA
196 AATTAGATCTATATG
*
97684200 GTTGTCCTAATTTAAGTTCGATTCCAGATTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
*
97684265 G-AAGTGTGCAATGAGTTGGAAGTTATTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
66 GAAAG-GTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
*
97684329 ACATTCACCTTTGCGAGAAATTAAGCAAGATTAGAGACGGATTATCTACCTCCACTTGTCTCAAA
130 ACATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
*
97684394 GAATTAGATATATATG
195 GAATTAGATCTATATG
97684410 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
*
97684475 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTTATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
*
97684540 CATTCACCTTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
*
97684605 AATTAGATCTATATA
196 AATTAGATCTATATG
* *
97684620 GTTGTCCTAATTTAAGTTTGATTCCAGATTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* *
97684685 GAAATGTGCAATGAGTTGGAAGTTATTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
*
97684750 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
*
97684815 AATTAGATCTATATA
196 AATTAGATCTATATG
* *
97684830 GTTGTCCTAATTTAAGTTTGATTCCAGATTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* *
97684895 GAAATGTGCAATGAGTTGGAAGTTATTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
* * *
97684960 CATTCACCTTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACTTCCACTTGTCTGAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
97685025 AATTAGATCTATATG
196 AATTAGATCTATATG
97685040 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
97685105 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
* * *
97685170 CATTCACCTTTGCGAGAAATTAAGCAAGATTGAAGACGGATTATCTAGCTGCACTTGTCTCAAAG
131 CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
*
97685235 AATTAGATCTATATA
196 AATTAGATCTATATG
*
97685250 GTTGTCCTAATTTAAGTTCGATTCCAGATTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
*
97685315 G-AAGTGTGCAATGAGTTGGAAGTTATTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
66 GAAAG-GTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
* *
97685379 ACATTCACCTTTGCGAGAAATTAAGCAAGATTAGAGATGGATTATCTACCTCCACTTGTCTCAAA
130 ACATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
*
97685444 GAATTAGATATATATG
195 GAATTAGATCTATATG
*
97685460 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTAAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* * *
97685525 GGAAGGTGCAATGAGTTGGAAGTTTTTCCGATGACTGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
97685590 CATTCACCTTTGC
131 CATTCACCTTTGC
97685603 ATGTTCTGCA
Statistics
Matches: 2161, Mismatches: 77, Indels: 10
0.96 0.03 0.00
Matches are distributed among these distances:
209 9 0.00
210 2146 0.99
211 6 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (210 bp):
GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
GAAAGGTGCAATGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
CATTCACCTTTGCGAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
AATTAGATCTATATG
Found at i:97686927 original size:29 final size:29
Alignment explanation
Indices: 97686893--97686948 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
97686883 GAAAACGACT
97686893 TTTAACAACAATGACTAAAATAAAAATAG
1 TTTAACAACAATGACTAAAATAAAAATAG
* * *
97686922 TTTAACGACAATGCCTAAAATTAAAAT
1 TTTAACAACAATGACTAAAATAAAAAT
97686949 TTTTATTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (29 bp):
TTTAACAACAATGACTAAAATAAAAATAG
Found at i:97691923 original size:210 final size:207
Alignment explanation
Indices: 97691506--97692016 Score: 649
Period size: 210 Copynumber: 2.5 Consensus size: 207
97691496 GACAATATTT
* **
97691506 ATCTCTTGAAAGTCTTGGAATTTCCGGTTGC-AGAACATTAAGCAAGATTGGAGACGGATTATCT
1 ATCTCTTGAAAGTCTTGGCATTT-CAATTGCAAGAA-ATTAAGCAAGATTGGAGACGGATTATCT
* * * *
97691570 ACAC-CCACTTGTCTCAAAGA-ATTAGATCTAACTCATCTTAATATAAATTCGATTCCAGATTTG
64 AC-CTCCACTTATCTCAAAGATATTAGATCTAAATCATCTTAATATAAATTCGATTCCAAAATTG
*
97691633 AAAGTATTTTCCTCTCTTCAAAACCTATCAATTCAAAGCTGCAATGAGTTGGAAGTTATTCCGAT
128 AAAGGATTTTCCTCTCTTCAAAACCTATCAATTCAAAGCTGCAATGAGTTGGAAGTTATTCCGAT
*
97691698 AACTGGGAAATGTTC
193 AACTCGGAAATGTTC
**
97691713 ATCTCTTGAAAGTCTTGGCATTCTCTTTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTA
1 ATCTCTTGAAAGTCTTGGCATT-TCAATTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTA
* * * * *
97691778 CCTCCACTTCTCTCAAA-ATATTAGATCTAAGAT-ACTGTTTAAATTTAAGTTTGATTCCAAAAT
65 CCTCCACTTATCTCAAAGATATTAGATCTAA-ATCA-T-CTT-AATATAAATTCGATTCCAAAAT
* * * * *
97691841 TGGAAGGATTTTCCTCTCTTCAATATCTATCAATTCAAGGCTGCAATGAGTTGGAAGTTCTTCCG
126 TGAAAGGATTTTCCTCTCTTCAAAACCTATCAATTCAAAGCTGCAATGAGTTGGAAGTTATTCCG
97691906 ATAAC-CGGAAGATGTTC
191 ATAACTCGGAA-ATGTTC
* * * *
97691923 ATCTCTTGAAAATCTTTGCATTTTCAAGTGCAAAAAATTAAGCAAGATTGGAGACGGATTATCTA
1 ATCTCTTGAAAGTCTTGGCA-TTTCAATTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTA
*
97691988 CCTTCACTTATCTCAAAGAT-TTAGATCTA
65 CCTCCACTTATCTCAAAGATATTAGATCTA
97692017 CATAATTGTC
Statistics
Matches: 267, Mismatches: 26, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
206 2 0.01
207 81 0.30
208 7 0.03
209 6 0.02
210 167 0.63
211 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (207 bp):
ATCTCTTGAAAGTCTTGGCATTTCAATTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTAC
CTCCACTTATCTCAAAGATATTAGATCTAAATCATCTTAATATAAATTCGATTCCAAAATTGAAA
GGATTTTCCTCTCTTCAAAACCTATCAATTCAAAGCTGCAATGAGTTGGAAGTTATTCCGATAAC
TCGGAAATGTTC
Found at i:97699538 original size:20 final size:21
Alignment explanation
Indices: 97699488--97699546 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
97699478 ATACATTTGT
*
97699488 AATATATGTATTTAATTATTAA
1 AATATATTTA-TTAATTATTAA
* *
97699510 TAGATATTTATTAATTA-TAA
1 AATATATTTATTAATTATTAA
97699530 AATATATTTATTAATTA
1 AATATATTTATTAATTA
97699547 AATAATTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 18 0.56
21 7 0.22
22 7 0.22
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (21 bp):
AATATATTTATTAATTATTAA
Found at i:97699580 original size:31 final size:32
Alignment explanation
Indices: 97699519--97699587 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
97699509 ATAGATATTT
97699519 ATTAATTATAAAATATATTTATTAATTAAATA
1 ATTAATTATAAAATATATTTATTAATTAAATA
*
97699551 ATTATATTATAAGAT-T-TTTATGTAA-TAAATAA
1 ATTA-ATTATAAAATATATTTAT-TAATTAAAT-A
97699583 ATTAA
1 ATTAA
97699588 AACATGACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
31 11 0.33
32 13 0.39
33 9 0.27
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (32 bp):
ATTAATTATAAAATATATTTATTAATTAAATA
Found at i:97700668 original size:22 final size:18
Alignment explanation
Indices: 97700620--97700654 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
97700610 TAATGTAAAG
97700620 TGAACTG-AAATATATAT
1 TGAACTGAAAATATATAT
97700637 TGAACTGAAAATATATAT
1 TGAACTGAAAATATATAT
97700655 ATGATTAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (18 bp):
TGAACTGAAAATATATAT
Found at i:97700896 original size:51 final size:53
Alignment explanation
Indices: 97700811--97700929 Score: 152
Period size: 51 Copynumber: 2.3 Consensus size: 53
97700801 AAGTGTTGCC
* * *
97700811 TTACTGTTACTGTTTCAGATTCGTTCTGAAGAGGTACTC-CGTACC-TTACTG
1 TTACTGTTACTGTTCCAGATTCATTCCGAAGAGGTACTCGCGTACCGTTACTG
* * * *
97700862 TTACTGTTATTGTTCCAGATTTATTCCGATGAGGTACTCTGTGTACCGTTACTG
1 TTACTGTTACTGTTCCAGATTCATTCCGAAGAGGTACTC-GCGTACCGTTACTG
97700916 TTACTGTTACTGTT
1 TTACTGTTACTGTT
97700930 ACCATTACGG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
51 33 0.58
53 5 0.09
54 19 0.33
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.43
Consensus pattern (53 bp):
TTACTGTTACTGTTCCAGATTCATTCCGAAGAGGTACTCGCGTACCGTTACTG
Found at i:97701068 original size:18 final size:18
Alignment explanation
Indices: 97701045--97701148 Score: 136
Period size: 18 Copynumber: 5.8 Consensus size: 18
97701035 CACATAAAGG
97701045 TACTGAATAATTGACTGT
1 TACTGAATAATTGACTGT
*
97701063 TACTGAATAAATGACTGT
1 TACTGAATAATTGACTGT
* *
97701081 TACTGAATAAATGACTGC
1 TACTGAATAATTGACTGT
* * *
97701099 TACTGAATAATTAATTGC
1 TACTGAATAATTGACTGT
* *
97701117 TACTGAATGATTGAATGT
1 TACTGAATAATTGACTGT
97701135 TACTGAATAATTGA
1 TACTGAATAATTGA
97701149 ATATTTATTA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 76 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (18 bp):
TACTGAATAATTGACTGT
Found at i:97703217 original size:20 final size:21
Alignment explanation
Indices: 97703192--97703230 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
97703182 AGTTAGTGCA
97703192 CTAACTAATT-TTAGTTGTAC
1 CTAACTAATTGTTAGTTGTAC
*
97703212 CTAACTGATTGTTAGTTGT
1 CTAACTAATTGTTAGTTGT
97703231 GATTAGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (21 bp):
CTAACTAATTGTTAGTTGTAC
Found at i:97708706 original size:24 final size:24
Alignment explanation
Indices: 97708644--97708695 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
97708634 TTTCTAGAAG
* * *
97708644 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
97708668 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
97708692 ATTT
1 ATTT
97708696 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:97709392 original size:23 final size:24
Alignment explanation
Indices: 97709366--97709414 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
97709356 GTTGAACAAG
97709366 TTTAATAAATTTTTAATT-TTTAT
1 TTTAATAAATTTTTAATTATTTAT
*
97709389 TTTAATGAATTTTTAATTATTTAT
1 TTTAATAAATTTTTAATTATTTAT
97709413 TT
1 TT
97709415 AATTATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTAATAAATTTTTAATTATTTAT
Found at i:97710500 original size:129 final size:128
Alignment explanation
Indices: 97710269--97710529 Score: 416
Period size: 129 Copynumber: 2.0 Consensus size: 128
97710259 CAATATAAGT
* *
97710269 TGTTCTGGTTGTGACTTGTGGAGAAGAAGAGGAAGGCTAAACGCTAAATCTATATATAGTGTCCC
1 TGTTCTGATTGTGACTTGTGGAGAAGAAGAGGAAGGCTAAACGCTAAATCTATAAATAGTGTCCC
* * * * *
97710334 CACTGGTGACTGAGTATGTGTCCTAAGCAACTTAAACTCTTTCTAAGAACATGATGGCATTAAC
66 CACTGGTGACTCAGTATATGTCCTAAACAACTCAAACTCTTTCTAAGAACATGATGGCAGT-AC
97710398 TGTTCTGATTGTGACTTGTGGAGAAGAAGAGGAAGGCTAAACGCTAAATCTATAAATAGTG-CCT
1 TGTTCTGATTGTGACTTGTGGAGAAGAAGAGGAAGGCTAAACGCTAAATCTATAAATAGTGTCC-
**
97710462 TGACTGGTGACTCAGTATATGTCCTAAACAACTCAAACTCTTTCTAAGAACATGATGGCAGTAC
65 CCACTGGTGACTCAGTATATGTCCTAAACAACTCAAACTCTTTCTAAGAACATGATGGCAGTAC
97710526 TGTT
1 TGTT
97710530 TGTATATCTT
Statistics
Matches: 122, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
128 8 0.07
129 114 0.93
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (128 bp):
TGTTCTGATTGTGACTTGTGGAGAAGAAGAGGAAGGCTAAACGCTAAATCTATAAATAGTGTCCC
CACTGGTGACTCAGTATATGTCCTAAACAACTCAAACTCTTTCTAAGAACATGATGGCAGTAC
Found at i:97712782 original size:5 final size:5
Alignment explanation
Indices: 97712772--97712869 Score: 51
Period size: 5 Copynumber: 18.4 Consensus size: 5
97712762 TAAGTCTGAA
*
97712772 AAAAT AAAAT AAAAAC AAAAT GAATAAT AGAAA- AAAAT AAAAAT AAAAT
1 AAAAT AAAAT -AAAAT AAAAT -AA-AAT A-AAAT AAAAT -AAAAT AAAAT
* *
97712821 -AAAT AAAACAT AAAACT -AAAT AAAAT CTAAAT -AATT CAAAAT AAAAT
1 AAAAT -AAA-AT AAAA-T AAAAT AAAAT -AAAAT AAAAT -AAAAT AAAAT
97712868 AA
1 AA
97712870 CACAAAATCT
Statistics
Matches: 74, Mismatches: 5, Indels: 28
0.69 0.05 0.26
Matches are distributed among these distances:
4 11 0.15
5 30 0.41
6 27 0.36
7 6 0.08
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:97712835 original size:28 final size:28
Alignment explanation
Indices: 97712777--97712840 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
97712767 CTGAAAAAAT
* * *
97712777 AAAATAAAAACAAAATGAATAATAGAAA
1 AAAATAAAAACAAAATAAATAAAACAAA
* *
97712805 AAAATAAAAATAAAATAAATAAAACATA
1 AAAATAAAAACAAAATAAATAAAACAAA
*
97712833 AAACTAAA
1 AAAATAAA
97712841 TAAAATCTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.16
Consensus pattern (28 bp):
AAAATAAAAACAAAATAAATAAAACAAA
Found at i:97712841 original size:21 final size:22
Alignment explanation
Indices: 97712803--97712844 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
97712793 GAATAATAGA
97712803 AAAAAATAAAAATAAAATAAAT
1 AAAAAATAAAAATAAAATAAAT
* *
97712825 AAAACATAAAACT-AAATAAA
1 AAAAAATAAAAATAAAATAAA
97712845 ATCTAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAAAATAAAAATAAAATAAAT
Found at i:97712851 original size:17 final size:15
Alignment explanation
Indices: 97712772--97712869 Score: 62
Period size: 15 Copynumber: 6.5 Consensus size: 15
97712762 TAAGTCTGAA
97712772 AAAATAAAATAAAAAC-
1 AAAAT-AAAT-AAAACT
* * *
97712788 AAAATGAATAATA-G
1 AAAATAAATAAAACT
*
97712802 AAAA-AAATAAAAAT
1 AAAATAAATAAAACT
97712816 AAAATAAATAAAACAT
1 AAAATAAATAAAAC-T
97712832 AAAACTAAATAAAATCT
1 AAAA-TAAATAAAA-CT
*
97712849 -AAATAATTCAAAA-T
1 AAAATAAAT-AAAACT
97712863 AAAATAA
1 AAAATAA
97712870 CACAAAATCT
Statistics
Matches: 67, Mismatches: 7, Indels: 17
0.74 0.08 0.19
Matches are distributed among these distances:
13 6 0.09
14 12 0.18
15 21 0.31
16 17 0.25
17 10 0.15
18 1 0.01
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAATAAAACT
Found at i:97712922 original size:3 final size:3
Alignment explanation
Indices: 97712908--97712979 Score: 53
Period size: 3 Copynumber: 24.7 Consensus size: 3
97712898 AACTTAGTCG
* * * * *
97712908 AAT AAA AAT AAT AAT ACT AAT AAT ACT AAT AAT GAC AAT -AT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97712954 AACT AAT -AT AAT AAT AAAT AA- AAT AA
1 AA-T AAT AAT AAT AAT -AAT AAT AAT AA
97712980 ACAGAAAGGT
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
2 8 0.15
3 40 0.75
4 5 0.09
ACGTcount: A:0.65, C:0.06, G:0.01, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:97712953 original size:14 final size:15
Alignment explanation
Indices: 97712918--97712970 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 15
97712908 AATAAAAATA
*
97712918 ATAATACTAA-TAAT
1 ATAATAATAACTAAT
*
97712932 ACTAATAATGAC-AAT
1 A-TAATAATAACTAAT
97712947 ATAATAA-AACTAAT
1 ATAATAATAACTAAT
97712961 ATAATAATAA
1 ATAATAATAA
97712971 ATAAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 2 0.06
14 17 0.53
15 13 0.41
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAATAATAACTAAT
Found at i:97713491 original size:11 final size:10
Alignment explanation
Indices: 97713453--97713482 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
97713443 TTTTAAATTT
97713453 AATTTTTTTC
1 AATTTTTTTC
97713463 AATTTTTATTC
1 AATTTTT-TTC
97713474 AATTTTTTT
1 AATTTTTTT
97713483 GAAATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (10 bp):
AATTTTTTTC
Found at i:97718764 original size:20 final size:20
Alignment explanation
Indices: 97718739--97718794 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
97718729 AAAAAATTAT
97718739 TTTATTTTAATTAAATAATA
1 TTTATTTTAATTAAATAATA
* *
97718759 TTTATTTCTATTTTAAATATTA
1 TTTATTT-TA-ATTAAATAATA
97718781 TATTATGTTTAATT
1 T-TTAT-TTTAATT
97718795 CTTGAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.24
21 2 0.07
22 12 0.41
23 6 0.21
24 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATTTTAATTAAATAATA
Found at i:97721420 original size:12 final size:12
Alignment explanation
Indices: 97721403--97721429 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97721393 TCTGTTGTTT
97721403 CCTTGAAAATCC
1 CCTTGAAAATCC
97721415 CCTTGAAAATCC
1 CCTTGAAAATCC
97721427 CCT
1 CCT
97721430 GACGTCTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.26
Consensus pattern (12 bp):
CCTTGAAAATCC
Found at i:97722968 original size:52 final size:52
Alignment explanation
Indices: 97722885--97722993 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
97722875 TGCCAATAGA
* * *
97722885 CAGAACCCCACCTTCAACGCCGGCGTCTGGTTCACTGCCATCTCTTCTATCT
1 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
97722937 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
1 CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
97722989 CAGAG
1 CAGAG
97722994 TCTAACTGGA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.18, C:0.40, G:0.16, T:0.26
Consensus pattern (52 bp):
CAGAGCCCCACCTTCAACACCGCCGTCTGGTTCACTGCCATCTCTTCTATCT
Found at i:97723326 original size:12 final size:12
Alignment explanation
Indices: 97723311--97723364 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
97723301 AATTATTAGT
*
97723311 TAAATAATTTTA
1 TAAATATTTTTA
97723323 TAAATATTTATTA
1 TAAATATTT-TTA
* *
97723336 TTACTATTTTTA
1 TAAATATTTTTA
97723348 TAAATTAGTTTTTA
1 TAAA-TA-TTTTTA
97723362 TAA
1 TAA
97723365 CTAAAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
12 13 0.38
13 12 0.35
14 9 0.26
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (12 bp):
TAAATATTTTTA
Found at i:97723326 original size:25 final size:25
Alignment explanation
Indices: 97723303--97723352 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
97723293 TTTGTTAAAA
97723303 TTATTAGTTAAATAATTTTATAAATAT
1 TTATTA-TT-AATAATTTTATAAATAT
* *
97723330 TTATTATTACTATTTTTATAAAT
1 TTATTATTAATAATTTTATAAAT
97723353 TAGTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.62
26 2 0.10
27 6 0.29
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATTAATAATTTTATAAATAT
Found at i:97724233 original size:16 final size:17
Alignment explanation
Indices: 97724212--97724245 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97724202 TAATTAATTC
97724212 AATATTTT-AAATTAAT
1 AATATTTTAAAATTAAT
97724228 AATATTTTAAAATTAAT
1 AATATTTTAAAATTAAT
97724245 A
1 A
97724246 CTATCTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATATTTTAAAATTAAT
Found at i:97724424 original size:39 final size:38
Alignment explanation
Indices: 97724366--97724510 Score: 125
Period size: 39 Copynumber: 3.7 Consensus size: 38
97724356 TCATATTTGT
* *
97724366 GGCGTTTTTCAAAAA-CGCCGCTAAAGATCAGCATTAGC
1 GGCGTTTTTTAAAAAGCGCCGCTAAAGATCA-CTTTAGC
* *
97724404 GGCGTTTTTTAAAAAGCGCCGCTAAAGGTGTACTTATAGC
1 GGCGTTTTTTAAAAAGCGCCGCTAAAGAT-CACTT-TAGC
* * * *
97724444 AGCGTTTCTTAAAAAAGCGCCGCTAATA-CTCGATCTTTTGC
1 GGCGTTT-TTTAAAAAGCGCCGCTAA-AGATC-A-CTTTAGC
*
97724485 GGCG-TTTTTAAAAAGCGCCGCGAAAG
1 GGCGTTTTTTAAAAAGCGCCGCTAAAG
97724511 CCACTAAAAT
Statistics
Matches: 87, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
38 15 0.17
39 30 0.34
40 13 0.15
41 25 0.29
42 4 0.05
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (38 bp):
GGCGTTTTTTAAAAAGCGCCGCTAAAGATCACTTTAGC
Found at i:97724677 original size:39 final size:40
Alignment explanation
Indices: 97724603--97724686 Score: 125
Period size: 39 Copynumber: 2.1 Consensus size: 40
97724593 TATTGCGGCA
* *
97724603 TTTTTACAAAAGCGCCGCTAATACTCGATCTTTAGTGGCG
1 TTTTTACAAAAGCGCCGCAAATACTCGATCCTTAGTGGCG
* *
97724643 TTTTTA-AAAAGCGCCGCAAATGCTCGCTCCTTAGTGGCG
1 TTTTTACAAAAGCGCCGCAAATACTCGATCCTTAGTGGCG
97724682 TTTTT
1 TTTTT
97724687 CATTCAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.85
40 6 0.15
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (40 bp):
TTTTTACAAAAGCGCCGCAAATACTCGATCCTTAGTGGCG
Found at i:97731852 original size:43 final size:42
Alignment explanation
Indices: 97731791--97731873 Score: 130
Period size: 43 Copynumber: 2.0 Consensus size: 42
97731781 CGAACCATAA
* *
97731791 AAATTATAGAACATAGATCATACCTGCATAAATCACATACGT
1 AAATTATAGAACACAGATCATACCTACATAAATCACATACGT
*
97731833 AAATTAATAGAACACAGATCATACCTACATAAATTACATAC
1 AAATT-ATAGAACACAGATCATACCTACATAAATCACATAC
97731874 CTTAAACAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 5 0.14
43 32 0.86
ACGTcount: A:0.48, C:0.19, G:0.07, T:0.25
Consensus pattern (42 bp):
AAATTATAGAACACAGATCATACCTACATAAATCACATACGT
Found at i:97734344 original size:16 final size:16
Alignment explanation
Indices: 97734306--97734361 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 16
97734296 GACCATTTGT
*
97734306 TATATTATTAATTTCA
1 TATATTATTAATTTAA
97734322 TATTATT-TTAATTATAA
1 TA-TATTATTAATT-TAA
*
97734339 TATATTAATAATTTAA
1 TATATTATTAATTTAA
97734355 TAATATT
1 T-ATATT
97734362 GAAAAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 16 0.47
17 18 0.53
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TATATTATTAATTTAA
Found at i:97736867 original size:43 final size:43
Alignment explanation
Indices: 97736805--97736888 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
97736795 CGTGTTTAAG
* *
97736805 GTATGTAATTTATGTAGGTATGATCTGTGTTCTATTAATTTAC
1 GTATGTAATTTATGCAGGTATGATCTATGTTCTATTAATTTAC
*
97736848 GTATGTGATTTATGCAGGTATGATCTATGTTCTATTAATTT
1 GTATGTAATTTATGCAGGTATGATCTATGTTCTATTAATTT
97736889 TTATGGTTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.25, C:0.07, G:0.19, T:0.49
Consensus pattern (43 bp):
GTATGTAATTTATGCAGGTATGATCTATGTTCTATTAATTTAC
Done.