Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 310 of 318
Found at i:98008150 original size:16 final size:17
Alignment explanation
Indices: 98008118--98008150 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
98008108 AATTTCAAAG
98008118 ATAGAATCCAGACACTTT
1 ATAGAATCCA-ACACTTT
98008136 ATAGAATCC-ACACTT
1 ATAGAATCCAACACTT
98008151 CAATAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (17 bp):
ATAGAATCCAACACTTT
Found at i:98014338 original size:20 final size:20
Alignment explanation
Indices: 98014306--98014358 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
98014296 TTGGGGGTTT
*
98014306 GGGAGAAAT-AAAATTTTTGA
1 GGGA-AAATAAAAATTTTGGA
*
98014326 GGGAAAGTAAAAATTTTGGA
1 GGGAAAATAAAAATTTTGGA
98014346 GGGAAAATAAAAA
1 GGGAAAATAAAAA
98014359 GAAAAAGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (20 bp):
GGGAAAATAAAAATTTTGGA
Found at i:98014422 original size:74 final size:72
Alignment explanation
Indices: 98014287--98014422 Score: 168
Period size: 74 Copynumber: 1.9 Consensus size: 72
98014277 AATTCAAGAG
*
98014287 GAAAAAGTTTTGGGGGTTTGGGAGAAATAAAATTTTTGAGGGAAAGTAAAAATTTTGGAGGGAAA
1 GAAAAAGTTTTGGGGGTTTGGGAGAAATAAAATTTTTGAGGGAAAGTAAAAAGTTTGGAGGGAAA
98014352 ATAAAAA
66 ATAAAAA
* * * * *
98014359 GAAAAAGGTTTT-GGGGTTTGAGGGGAAGTAAATTTTTTTGGGGGAAAGTATAAAGGTTT-GAGG
1 GAAAAA-GTTTTGGGGGTTTG-GGAGAAATAAA-ATTTTTGAGGGAAAGTA-AAAAGTTTGGAGG
98014422 G
62 G
98014423 GGGTTTGGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
72 14 0.26
73 14 0.26
74 20 0.37
75 6 0.11
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.29
Consensus pattern (72 bp):
GAAAAAGTTTTGGGGGTTTGGGAGAAATAAAATTTTTGAGGGAAAGTAAAAAGTTTGGAGGGAAA
ATAAAAA
Found at i:98015895 original size:22 final size:21
Alignment explanation
Indices: 98015866--98015907 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
98015856 ATCCACAAAA
98015866 ATATAACTGTTTGAATCTAGC
1 ATATAACTGTTTGAATCTAGC
98015887 ATATGAACTGTTTGAATCTAG
1 ATAT-AACTGTTTGAATCTAG
98015908 TGGTTGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATAACTGTTTGAATCTAGC
Found at i:98019644 original size:21 final size:21
Alignment explanation
Indices: 98019571--98019646 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
98019561 GTGGGCTTTG
* * * *
98019571 CCTCGGGTTCTGCTGGTTTCG
1 CCTCGGTTTCGGCTGGCTTCA
* * *
98019592 CCTCAGTTTCCGCAGGCTTCA
1 CCTCGGTTTCGGCTGGCTTCA
98019613 CCTCGGTTTCGGCTGGCTTCA
1 CCTCGGTTTCGGCTGGCTTCA
98019634 CCTCGGTTTCGGC
1 CCTCGGTTTCGGC
98019647 CAGAGCTTCT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.05, C:0.34, G:0.28, T:0.33
Consensus pattern (21 bp):
CCTCGGTTTCGGCTGGCTTCA
Found at i:98026951 original size:68 final size:65
Alignment explanation
Indices: 98026841--98027253 Score: 162
Period size: 68 Copynumber: 6.1 Consensus size: 65
98026831 CTTATTAGGA
* * * * ** *
98026841 ACTTAGCTTTTCAAAATTTTCCACCTT-TTCAAGTCACATACTTATTAAAGTACTTTGCCTTCAT
1 ACTTAGCGTTTCAAAACTTTCAACCTTCTT-GAGTTGCATACTTCTTAAAGTACTTT-CCTTCA-
*
98026905 ATGT
63 A-GC
* * * *
98026909 ACTTAGCGTTTCAAAGCTTTCAACCTTCTTTG-GTTAG-GTACTTCTTAAAATACATTATCTTTT
1 ACTTAGCGTTTCAAAACTTTCAACCTTC-TTGAGTT-GCATACTTCTTAAAGTAC-TT-TC-CTT
98026972 CAAGC
61 CAAGC
* * *
98026977 ACTTATCTTTTCAAAACTTTCAACCTTCTTGAGTTGCATACTTCTTAAAGTACTTTACCTTCTCG
1 ACTTAGCGTTTCAAAACTTTCAACCTTCTTGAGTTGCATACTTCTTAAAGTACTTT-CC-T-TCA
*
98027042 GGC
63 AGC
* * * * * ** * *
98027045 ATTTAG-TTTTGCAAACCTTTCATCCTT-TTCAGGTTGCATGTTTCTTAAAGTGCTTCACCTTCT
1 ACTTAGCGTTT-CAAAACTTTCAACCTTCTTGA-GTTGCATACTTCTTAAAGTACTT-TCC-T-T
*
98027108 CAAAC
61 CAAGC
* * ** * ** *
98027113 ACTTAACTTTTCAAAGTTTTCAACCTTATCAAGTTGTGA-ACTTCTTAAAGTACTTTGCCTT-AT
1 ACTTAGCGTTTCAAAACTTTCAACCTTCTTGAGTTG-CATACTTCTTAAAGTACTTT-CCTTCA-
*
98027176 TAGGGT
63 -A--GC
* * *
98027182 A-TTAGCTTTTCAAAACTTTCAACCTTCTT-AGTTTCCATACGTT-TTAAAGTACCTTGCCTTTA
1 ACTTAGCGTTTCAAAACTTTCAACCTTCTTGAG-TTGCATAC-TTCTTAAAGTA-CTTTCC-TT-
98027244 CAAGC
61 CAAGC
98027249 ACTTA
1 ACTTA
98027254 ACATTTTCAA
Statistics
Matches: 260, Mismatches: 55, Indels: 60
0.69 0.15 0.16
Matches are distributed among these distances:
65 1 0.00
66 2 0.01
67 22 0.08
68 207 0.80
69 20 0.08
70 7 0.03
71 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (65 bp):
ACTTAGCGTTTCAAAACTTTCAACCTTCTTGAGTTGCATACTTCTTAAAGTACTTTCCTTCAAGC
Found at i:98027252 original size:136 final size:136
Alignment explanation
Indices: 98026841--98027264 Score: 355
Period size: 136 Copynumber: 3.1 Consensus size: 136
98026831 CTTATTAGGA
* * * * ** *
98026841 ACTTAGCTTTTCAAAATTTTCCACCTTTTCAAGTCACATACTTATTAAAGTACTTTGCCTTCATA
1 ACTTAACTTTTCAAAACTTTCAACCTTATCAAGTTGCATACTTCTTAAAGTACTTTGCCTT-ATA
* * * * ** * * *
98026906 -TGTACTTAGCGTTTCAAAGCTTTCAACCTTCTTTGGTTAGGTAC-TTCTTAAAATACATTATCT
65 GGGTACTTAGCTTTTCAAAACTTTCAACCTTCTTAGGTTACATACGTTCTTAAAGTACCTTA-CC
98026969 TTTCAAGC
129 TTTCAAGC
* * ** * * *
98026977 ACTTATCTTTTCAAAACTTTCAACCTTCTTGAGTTGCATACTTCTTAAAGTACTTTACCTTCTCG
1 ACTTAACTTTTCAAAACTTTCAACCTTATCAAGTTGCATACTTCTTAAAGTACTTTGCCTTATAG
* * * * * *
98027042 GGCATTTAG-TTTTGCAAACCTTTCATCCTT-TTCAGGTTGCAT--GTTTCTTAAAGT-GCTTCA
66 GGTACTTAGCTTTT-CAAAACTTTCAACCTTCTT-AGGTTACATACG-TTCTTAAAGTACCTT-A
*
98027102 CCTTCTCAAAC
127 CCTT-TCAAGC
** *
98027113 ACTTAACTTTTCAAAGTTTTCAACCTTATCAAGTTGTGA-ACTTCTTAAAGTACTTTGCCTTATT
1 ACTTAACTTTTCAAAACTTTCAACCTTATCAAGTTG-CATACTTCTTAAAGTACTTTGCCTTA-T
* * *
98027177 AGGGTA-TTAGCTTTTCAAAACTTTCAACCTTCTTAGTTTCCATACGTT-TTAAAGTACCTTGCC
64 AGGGTACTTAGCTTTTCAAAACTTTCAACCTTCTTAGGTTACATACGTTCTTAAAGTACCTTACC
98027240 TTTACAAGC
129 TTT-CAAGC
98027249 ACTTAACATTTTCAAA
1 ACTTAAC-TTTTCAAA
98027265 TGTCCTTAAT
Statistics
Matches: 227, Mismatches: 45, Indels: 31
0.75 0.15 0.10
Matches are distributed among these distances:
135 12 0.05
136 189 0.83
137 25 0.11
138 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (136 bp):
ACTTAACTTTTCAAAACTTTCAACCTTATCAAGTTGCATACTTCTTAAAGTACTTTGCCTTATAG
GGTACTTAGCTTTTCAAAACTTTCAACCTTCTTAGGTTACATACGTTCTTAAAGTACCTTACCTT
TCAAGC
Found at i:98035216 original size:52 final size:52
Alignment explanation
Indices: 98035087--98035218 Score: 162
Period size: 50 Copynumber: 2.6 Consensus size: 52
98035077 ATGTGTTCTG
* * *
98035087 CATTTAATAAAGTCATGCATTATGTAACT-CTCATGTAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCTCACGTAAGTTAAGTTTGCAT
* * * *
98035138 CA-CAAATTATGACATGCATTATGTAACTCCT-ACGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCTCACGTAAGTT-AAGTTTGCAT
*
98035189 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
98035219 ATTTGTTCAT
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
50 28 0.42
51 16 0.24
52 23 0.34
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (52 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCTCACGTAAGTTAAGTTTGCAT
Found at i:98043982 original size:35 final size:31
Alignment explanation
Indices: 98043939--98044012 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 31
98043929 CTTAAAATTG
*
98043939 TTTAAAATATAAAAAATTGTACAAAATTATATAAA
1 TTTAAAATATAAAAAATAGT--AAAATT-TA-AAA
*
98043974 TTTAAAATATTAAAAATAGTAAAATTTAAAA
1 TTTAAAATATAAAAAATAGTAAAATTTAAAA
98044005 TTTAAAAT
1 TTTAAAAT
98044013 CATTTAACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
31 11 0.30
32 2 0.05
33 6 0.16
35 18 0.49
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.36
Consensus pattern (31 bp):
TTTAAAATATAAAAAATAGTAAAATTTAAAA
Found at i:98044005 original size:7 final size:7
Alignment explanation
Indices: 98043961--98044012 Score: 50
Period size: 7 Copynumber: 6.7 Consensus size: 7
98043951 AAAATTGTAC
98043961 AAAATTAT
1 AAAATT-T
98043969 ATAAATTT
1 A-AAATTT
98043977 AAAATATT
1 AAAAT-TT
*
98043985 AAAAATAGT
1 -AAAAT-TT
98043994 AAAATTT
1 AAAATTT
98044001 AAAATTT
1 AAAATTT
98044008 AAAAT
1 AAAAT
98044013 CATTTAACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
7 17 0.44
8 10 0.26
9 12 0.31
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (7 bp):
AAAATTT
Found at i:98044050 original size:19 final size:18
Alignment explanation
Indices: 98044028--98044088 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
98044018 AACAATAATA
*
98044028 GAAAATTATTAAAATATAT
1 GAAAATTATTAAAAT-TAC
98044047 G-AAATCTATATAAAATTAC
1 GAAAAT-TAT-TAAAATTAC
* *
98044066 AAAAATTATAAAAATTAC
1 GAAAATTATTAAAATTAC
98044084 -AAAAT
1 GAAAAT
98044089 AAAAAAGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 5 0.14
18 12 0.33
19 9 0.25
20 10 0.28
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (18 bp):
GAAAATTATTAAAATTAC
Found at i:98044070 original size:9 final size:9
Alignment explanation
Indices: 98044058--98044087 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
98044048 AAATCTATAT
98044058 AAAATTACA
1 AAAATTACA
*
98044067 AAAATTATA
1 AAAATTACA
98044076 AAAATTACA
1 AAAATTACA
98044085 AAA
1 AAA
98044088 TAAAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAATTACA
Found at i:98044081 original size:18 final size:20
Alignment explanation
Indices: 98044048--98044087 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
98044038 AAAATATATG
98044048 AAATCTATATAAAATTACAA
1 AAATCTATATAAAATTACAA
98044068 AAAT-TATA-AAAATTACAA
1 AAATCTATATAAAATTACAA
98044086 AA
1 AA
98044088 TAAAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
19 4 0.20
20 4 0.20
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
AAATCTATATAAAATTACAA
Found at i:98044149 original size:27 final size:27
Alignment explanation
Indices: 98044100--98044176 Score: 66
Period size: 27 Copynumber: 2.7 Consensus size: 27
98044090 AAAAAGAAAT
98044100 TTATTAAAAATTAATAGAGAAATATAA-ATA
1 TTATT-AAAA-TAATA-A-AAATATAACATA
* * *
98044130 TTATATAAAATAATGAAAATGTAACCTA
1 TTAT-TAAAATAATAAAAATATAACATA
*
98044158 TTATTAAAATTATAAAAAT
1 TTATTAAAATAATAAAAAT
98044177 TGTAGGCATA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 20 0.50
28 7 0.17
29 4 0.10
30 8 0.20
31 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (27 bp):
TTATTAAAATAATAAAAATATAACATA
Found at i:98044683 original size:15 final size:15
Alignment explanation
Indices: 98044665--98044712 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
98044655 TGTTTAAGGT
98044665 TTTTGAGTTTGGAGA
1 TTTTGAGTTTGGAGA
* *
98044680 TTTTGGGTTAGG-GA
1 TTTTGAGTTTGGAGA
* *
98044694 TTTTGATTTTGGAAA
1 TTTTGAGTTTGGAGA
98044709 TTTT
1 TTTT
98044713 TATTTAAGGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (15 bp):
TTTTGAGTTTGGAGA
Found at i:98044729 original size:30 final size:30
Alignment explanation
Indices: 98044657--98044735 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
98044647 TCGGTTTATG
* * *
98044657 TTTAAGGT-TTTTGAGTTTGGAGATTTTGG
1 TTTAAGGTATTTTGATTTTGGAAATTTTGA
* * *
98044686 GTT-AGGGATTTTGATTTTGGAAATTTTTA
1 TTTAAGGTATTTTGATTTTGGAAATTTTGA
98044715 TTTAAGGTATTTTGATTTTGG
1 TTTAAGGTATTTTGATTTTGG
98044736 GGATTTTTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 3 0.08
29 21 0.52
30 16 0.40
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (30 bp):
TTTAAGGTATTTTGATTTTGGAAATTTTGA
Found at i:98044741 original size:15 final size:15
Alignment explanation
Indices: 98044690--98044742 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
98044680 TTTTGGGTTA
98044690 GGGATTTTGATTTTG
1 GGGATTTTGATTTTG
** * **
98044705 GAAATTTTTATTTAA
1 GGGATTTTGATTTTG
*
98044720 GGTATTTTGATTTTG
1 GGGATTTTGATTTTG
98044735 GGGATTTT
1 GGGATTTT
98044743 TTGTTTATTG
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.55
Consensus pattern (15 bp):
GGGATTTTGATTTTG
Found at i:98044742 original size:30 final size:30
Alignment explanation
Indices: 98044657--98044743 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 30
98044647 TCGGTTTATG
* **
98044657 TTTAAGGT-TTTTGAGTTTGGAGATTTTGG
1 TTTAAGGTATTTTGATTTTGGAGATTTTTA
* * *
98044686 GTT-AGGGATTTTGATTTTGGAAATTTTTA
1 TTTAAGGTATTTTGATTTTGGAGATTTTTA
*
98044715 TTTAAGGTATTTTGATTTTGGGGATTTTT
1 TTTAAGGTATTTTGATTTTGGAGATTTTT
98044744 TGTTTATTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
28 3 0.07
29 21 0.46
30 22 0.48
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (30 bp):
TTTAAGGTATTTTGATTTTGGAGATTTTTA
Found at i:98045846 original size:114 final size:114
Alignment explanation
Indices: 98045640--98045887 Score: 363
Period size: 114 Copynumber: 2.2 Consensus size: 114
98045630 TGGTAATGAA
* * *
98045640 GTTGTTGAGGTTATTAGCAGTAAATGTGGTGAGGGTGTTGAGGGTTTAAATGGGGAGGGTGTTGA
1 GTTGTTGAGGTTGTTAGCAGTAAATGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAGGGTGTTGA
* * *
98045705 GGTTGCTGGTAGTGAAGGTGGTAAGGGTGGTGAAGATTTAGGTGGGAAAG
66 GGTTGCTGGTAGTCAAGGCGGTAAGGGTGGTGAAGATTTAGGTAGG-AAG
* * * **
98045755 G-TGTTGATGTTGTTGGCAGTCAATGTGGTGAGGGTGTTGAAGGTTTAGGTGGGAAGGGTGTTGA
1 GTTGTTGAGGTTGTTAGCAGTAAATGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAGGGTGTTGA
* *
98045819 GGTTGCTGGTAGTCAAGGCGGTGAGGGTGGTGAAGGTTTAGGTAGGAAG
66 GGTTGCTGGTAGTCAAGGCGGTAAGGGTGGTGAAGATTTAGGTAGGAAG
98045868 GTTGTTGAGGTTGTTAGCAG
1 GTTGTTGAGGTTGTTAGCAG
98045888 CCAAGGTAGT
Statistics
Matches: 117, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
113 4 0.03
114 112 0.96
115 1 0.01
ACGTcount: A:0.20, C:0.03, G:0.46, T:0.31
Consensus pattern (114 bp):
GTTGTTGAGGTTGTTAGCAGTAAATGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAGGGTGTTGA
GGTTGCTGGTAGTCAAGGCGGTAAGGGTGGTGAAGATTTAGGTAGGAAG
Found at i:98045893 original size:57 final size:57
Alignment explanation
Indices: 98045642--98045908 Score: 282
Period size: 57 Copynumber: 4.7 Consensus size: 57
98045632 GTAATGAAGT
* * * * * * ** *
98045642 TGTTGAGGTTATTAGCAGTAAATGTGGTGAGGGTGTTGAGGGTTTAAATGGGGAGGG
1 TGTTGAGGTTGTTGGCAGTCAAGGTGGTGAGGGTGGTGAAGGTTTAGGTGGGAAGGG
* * * * * *
98045699 TGTTGAGGTTGCTGGTAGTGAAGGTGGTAAGGGTGGTGAAGATTTAGGTGGGAAAGG
1 TGTTGAGGTTGTTGGCAGTCAAGGTGGTGAGGGTGGTGAAGGTTTAGGTGGGAAGGG
* * *
98045756 TGTTGATGTTGTTGGCAGTCAATGTGGTGAGGGTGTTGAAGGTTTAGGTGGGAAGGG
1 TGTTGAGGTTGTTGGCAGTCAAGGTGGTGAGGGTGGTGAAGGTTTAGGTGGGAAGGG
* * * * *
98045813 TGTTGAGGTTGCTGGTAGTCAAGGCGGTGAGGGTGGTGAAGGTTTAGGTAGGAAGGT
1 TGTTGAGGTTGTTGGCAGTCAAGGTGGTGAGGGTGGTGAAGGTTTAGGTGGGAAGGG
* * * * *
98045870 TGTTGAGGTTGTTAGCAGCCAAGGTAGTAAAGGTGGTGA
1 TGTTGAGGTTGTTGGCAGTCAAGGTGGTGAGGGTGGTGA
98045909 GGGTGTTAAA
Statistics
Matches: 171, Mismatches: 39, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 171 1.00
ACGTcount: A:0.21, C:0.04, G:0.45, T:0.30
Consensus pattern (57 bp):
TGTTGAGGTTGTTGGCAGTCAAGGTGGTGAGGGTGGTGAAGGTTTAGGTGGGAAGGG
Found at i:98047251 original size:31 final size:31
Alignment explanation
Indices: 98047216--98047303 Score: 158
Period size: 31 Copynumber: 2.8 Consensus size: 31
98047206 TAAATAATGT
* *
98047216 TATTTATTTTGTACCAATTTATTACTGGTGC
1 TATTTATTTTGCACCAATTTATTACTGATGC
98047247 TATTTATTTTGCACCAATTTATTACTGATGC
1 TATTTATTTTGCACCAATTTATTACTGATGC
98047278 TATTTATTTTGCACCAATTTATTACT
1 TATTTATTTTGCACCAATTTATTACT
98047304 AATGTTTTAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (31 bp):
TATTTATTTTGCACCAATTTATTACTGATGC
Found at i:98047268 original size:15 final size:15
Alignment explanation
Indices: 98047248--98047300 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
98047238 TACTGGTGCT
98047248 ATTTATTTTGCACCA
1 ATTTATTTTGCACCA
* * *
98047263 ATTTATTACTG-ATGCT
1 ATTTATT-TTGCA-CCA
98047279 ATTTATTTTGCACCA
1 ATTTATTTTGCACCA
98047294 ATTTATT
1 ATTTATT
98047301 ACTAATGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (15 bp):
ATTTATTTTGCACCA
Found at i:98048267 original size:5 final size:6
Alignment explanation
Indices: 98048254--98048297 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
98048244 ATAATTTAAT
*
98048254 AAATAA AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA
98048298 TAACATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 29 0.85
8 5 0.15
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:98048286 original size:20 final size:20
Alignment explanation
Indices: 98048257--98048295 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
98048247 ATTTAATAAA
98048257 TAAAAATAAAAATAAAAATC
1 TAAAAATAAAAATAAAAATC
*
98048277 TAAAACTAAAAATAAAAAT
1 TAAAAATAAAAATAAAAAT
98048296 AATAACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAATC
Found at i:98048358 original size:27 final size:27
Alignment explanation
Indices: 98048328--98048396 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
98048318 ATAATTAAGT
98048328 TAATTCGGTTAATTTGGGTAATTCGGG
1 TAATTCGGTTAATTTGGGTAATTCGGG
* *
98048355 TAATTCGGGTAATTTGGGTAATTCGGT
1 TAATTCGGTTAATTTGGGTAATTCGGG
*
98048382 TAATTTGGTTAATTT
1 TAATTCGGTTAATTT
98048397 TATACTTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (27 bp):
TAATTCGGTTAATTTGGGTAATTCGGG
Found at i:98048396 original size:9 final size:9
Alignment explanation
Indices: 98048328--98048386 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
98048318 ATAATTAAGT
*
98048328 TAATTCGGT
1 TAATTCGGG
*
98048337 TAATTTGGG
1 TAATTCGGG
98048346 TAATTCGGG
1 TAATTCGGG
98048355 TAATTCGGG
1 TAATTCGGG
*
98048364 TAATTTGGG
1 TAATTCGGG
*
98048373 TAATTCGGT
1 TAATTCGGG
98048382 TAATT
1 TAATT
98048387 TGGTTAATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (9 bp):
TAATTCGGG
Found at i:98049189 original size:161 final size:161
Alignment explanation
Indices: 98048870--98049185 Score: 415
Period size: 161 Copynumber: 2.0 Consensus size: 161
98048860 GGTGAAGGTC
* * * * * *
98048870 ACAACAGAAGATCATGCCTTCAACCTAACACAACTGGATCAGAGGTATATCGTAAACACTTTTTC
1 ACAACAAAAGACCATGCATTCAACCTAACACAACTGGATCACAAGTATATCATAAACACTTTTTC
* * *
98048935 ACTATCAAGTTCCAAAATATTTAAATCTAATTTGGAATTGTGATTATTTATTGTCTCAGTTTGGT
66 ACTATCAAGTTCCAAAATATTTAAATCTAATTTGGAATTGTGATTATTTATTGCCTCAATCTGGT
* *
98049000 ATGAGTACAAGAACTAGAAGTTAAAAAAAGA
131 AAGAGTACAAGAACTAGAAGTAAAAAAAAGA
* *
98049031 ACAACAAAAGACCATGCATTCAACCTAACACAACTGGATCACAAGTATATCATAAACATTTTTTT
1 ACAACAAAAGACCATGCATTCAACCTAACACAACTGGATCACAAGTATATCATAAACACTTTTTC
* * * * **
98049096 ACTGTCAAGTTTCAAAGTATTTAAATCTAGTTTGGGGTTGTGA-T-TTT-TT-CCTCAATCTGGT
66 ACTATCAAGTTCCAAAATATTTAAATCTAATTTGGAATTGTGATTATTTATTGCCTCAATCTGGT
**
98049157 AAGAGTATTAGAACTAGAAGTAAAAAAAA
131 AAGAGTACAAGAACTAGAAGTAAAAAAAA
98049186 AAAAAGATGG
Statistics
Matches: 134, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
157 34 0.25
158 2 0.01
159 3 0.02
160 1 0.01
161 94 0.70
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (161 bp):
ACAACAAAAGACCATGCATTCAACCTAACACAACTGGATCACAAGTATATCATAAACACTTTTTC
ACTATCAAGTTCCAAAATATTTAAATCTAATTTGGAATTGTGATTATTTATTGCCTCAATCTGGT
AAGAGTACAAGAACTAGAAGTAAAAAAAAGA
Found at i:98050256 original size:68 final size:67
Alignment explanation
Indices: 98050182--98050310 Score: 181
Period size: 67 Copynumber: 1.9 Consensus size: 67
98050172 TCTAGTTGAC
* * * **
98050182 ACAAAAATCAAAC-AACTAAAAAAATC-CCTAATTTTTTATGTAGTCTAAAACAAATTGGCTAAC
1 ACAAAAAACAAACAAACT-AAAAAATCTCC-AATTTCTTATGAACCCTAAAACAAATTGGCTAAC
98050245 CGAT
64 CGAT
98050249 ACAAAAAACAAACAAACTAAAAAATCTCCAATTTCTTATGAACCCTAAAACAAATTGGCTAA
1 ACAAAAAACAAACAAACTAAAAAATCTCCAATTTCTTATGAACCCTAAAACAAATTGGCTAA
98050311 ATATGTGCTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
67 49 0.89
68 6 0.11
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.24
Consensus pattern (67 bp):
ACAAAAAACAAACAAACTAAAAAATCTCCAATTTCTTATGAACCCTAAAACAAATTGGCTAACCG
AT
Found at i:98053072 original size:22 final size:23
Alignment explanation
Indices: 98053035--98053086 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
98053025 TATTACTAAC
*
98053035 ATGTATATATACTATATATTTTT
1 ATGTATATATACTATACATTTTT
98053058 AT-TATAT-TACGTATACATTTTT
1 ATGTATATATAC-TATACATTTTT
98053080 ATGTATA
1 ATGTATA
98053087 CGCCATGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 17 0.65
23 6 0.23
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (23 bp):
ATGTATATATACTATACATTTTT
Found at i:98058130 original size:20 final size:21
Alignment explanation
Indices: 98058080--98058133 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
98058070 TAAAATATAT
*
98058080 TATTTTT-TTTTACTTTTCTA
1 TATTTTTATTTTAGTTTTCTA
**
98058100 TATTTAAATTTTAGTTTT-TA
1 TATTTTTATTTTAGTTTTCTA
98058120 TATTTTTATTTTAG
1 TATTTTTATTTTAG
98058134 AAAGTTAGTC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (21 bp):
TATTTTTATTTTAGTTTTCTA
Found at i:98059807 original size:13 final size:13
Alignment explanation
Indices: 98059775--98059885 Score: 111
Period size: 13 Copynumber: 9.5 Consensus size: 13
98059765 ATATCTTTAT
98059775 TCCACTAAACCAC
1 TCCACTAAACCAC
98059788 T-C-C--AACCAC
1 TCCACTAAACCAC
98059797 TCCACTAAACCAC
1 TCCACTAAACCAC
*
98059810 TACACTAAACCAC
1 TCCACTAAACCAC
98059823 TCCACTAAACCAC
1 TCCACTAAACCAC
98059836 -CC-C--AACCAC
1 TCCACTAAACCAC
*
98059845 TCTACTAAACCAC
1 TCCACTAAACCAC
*
98059858 TCCATTAAACCA-
1 TCCACTAAACCAC
98059870 -CC-CT-AACCAC
1 TCCACTAAACCAC
98059880 TCCACT
1 TCCACT
98059886 TGCCTACAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
9 18 0.22
10 3 0.04
11 8 0.10
12 5 0.06
13 47 0.58
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (13 bp):
TCCACTAAACCAC
Found at i:98059842 original size:48 final size:48
Alignment explanation
Indices: 98059775--98059870 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
98059765 ATATCTTTAT
*
98059775 TCCACTAAACCACTCCAACCACTCCACTAAACCACTACACTAAACCAC
1 TCCACTAAACCACCCCAACCACTCCACTAAACCACTACACTAAACCAC
* * *
98059823 TCCACTAAACCACCCCAACCACTCTACTAAACCACTCCATTAAACCAC
1 TCCACTAAACCACCCCAACCACTCCACTAAACCACTACACTAAACCAC
98059871 CCTAACCACT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.39, C:0.46, G:0.00, T:0.16
Consensus pattern (48 bp):
TCCACTAAACCACCCCAACCACTCCACTAAACCACTACACTAAACCAC
Found at i:98059843 original size:35 final size:34
Alignment explanation
Indices: 98059804--98059881 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 34
98059794 CACTCCACTA
98059804 AACCACTACACTAAACCACTCCACTAAACCACCCC
1 AACCACT-CACTAAACCACTCCACTAAACCACCCC
* *
98059839 AACCACTCTACTAAACCACTCCATTAAACCACCCT
1 AACCACTC-ACTAAACCACTCCACTAAACCACCCC
98059874 AACCACTC
1 AACCACTC
98059882 CACTTGCCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 39 0.98
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (34 bp):
AACCACTCACTAAACCACTCCACTAAACCACCCC
Found at i:98060290 original size:3 final size:3
Alignment explanation
Indices: 98060279--98060358 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
98060269 TTTATTTTTT
* *
98060279 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
98060322 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA T
98060359 ATATGCCCTG
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 7 0.11
3 46 0.74
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:98060336 original size:21 final size:18
Alignment explanation
Indices: 98060283--98060358 Score: 82
Period size: 18 Copynumber: 4.1 Consensus size: 18
98060273 TTTTTTTTAT
* *
98060283 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
98060302 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
98060320 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
98060341 TTTATATTATTA-TATTA
1 TTTATATTATTATTATTA
98060358 T
1 T
98060359 ATATGCCCTG
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
17 6 0.12
18 18 0.36
19 9 0.18
20 5 0.10
21 12 0.24
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:98060359 original size:27 final size:26
Alignment explanation
Indices: 98060270--98060362 Score: 82
Period size: 26 Copynumber: 3.6 Consensus size: 26
98060260 GAGCTTTGTT
* * * *
98060270 TTATTTTTTTTATTTTATTATTTTTA
1 TTATTATTTATATATTATTATTTATA
*
98060296 CTATTATTTATATTATTATTA-TTAT-
1 TTATTATTTATA-TATTATTATTTATA
* * *
98060321 TTCTCATGTATATATTATTATTTATA
1 TTATTATTTATATATTATTATTTATA
98060347 TTATTATATTATATAT
1 TTATTAT-TTATATAT
98060363 GCCCTGTCCA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
24 8 0.16
25 12 0.24
26 17 0.33
27 14 0.27
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (26 bp):
TTATTATTTATATATTATTATTTATA
Found at i:98066113 original size:39 final size:39
Alignment explanation
Indices: 98066034--98066189 Score: 251
Period size: 39 Copynumber: 4.0 Consensus size: 39
98066024 CGAGACTTTA
* * * * *
98066034 AGCCCGGATGTAATACCAGCA-TAAAGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
98066072 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
98066111 AGCCCGGGTATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
98066150 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
98066189 A
1 A
98066190 CGAATGCCTT
Statistics
Matches: 110, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 19 0.17
39 91 0.83
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:98066194 original size:19 final size:19
Alignment explanation
Indices: 98066170--98066208 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
98066160 TAACACCAGC
*
98066170 ACGAATGCCTTCGGGACTT
1 ACGAATGCCTTCAGGACTT
98066189 ACGAATGCCTTCAGGACTT
1 ACGAATGCCTTCAGGACTT
98066208 A
1 A
98066209 GCCCGGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (19 bp):
ACGAATGCCTTCAGGACTT
Found at i:98066221 original size:58 final size:58
Alignment explanation
Indices: 98066131--98066247 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
98066121 TAACACCAGC
*
98066131 ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
98066189 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
98066247 A
1 A
98066248 GCCCGGATAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (58 bp):
ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:98066245 original size:39 final size:39
Alignment explanation
Indices: 98066189--98066297 Score: 200
Period size: 39 Copynumber: 2.8 Consensus size: 39
98066179 TTCGGGACTT
*
98066189 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGC
1 ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
98066228 ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
1 ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
*
98066267 ACGAATGCCTTCGGGAATTAGCCCGGATATA
1 ACGAATGCCTTCGGGACTTAGCCCGGATATA
98066298 TATCTCACAC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
Found at i:98066258 original size:97 final size:97
Alignment explanation
Indices: 98066092--98066282 Score: 364
Period size: 97 Copynumber: 2.0 Consensus size: 97
98066082 TAACACCAGC
* *
98066092 ACGAATGCCTTCGGGACTTAGCCCGGGTATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
98066157 ATATAACACCAGCACGAATGCCTTCGGGACTT
66 ATATAACACCAGCACGAATGCCTTCGGGACTT
98066189 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
98066254 ATATAACACCAGCACGAATGCCTTCGGGA
66 ATATAACACCAGCACGAATGCCTTCGGGA
98066283 ATTAGCCCGG
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 92 1.00
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (97 bp):
ACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
ATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:98069475 original size:19 final size:19
Alignment explanation
Indices: 98069451--98069493 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
98069441 CATATTTTAA
98069451 TTTCTAGTGTATCCTTACT
1 TTTCTAGTGTATCCTTACT
98069470 TTTCTAGTGTATCCTTACT
1 TTTCTAGTGTATCCTTACT
98069489 TTTCT
1 TTTCT
98069494 TTCCTTCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.14, C:0.21, G:0.09, T:0.56
Consensus pattern (19 bp):
TTTCTAGTGTATCCTTACT
Found at i:98071177 original size:15 final size:16
Alignment explanation
Indices: 98071154--98071185 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
98071144 TTTCCTATTA
98071154 TTTATTATATTATTTT
1 TTTATTATATTATTTT
98071170 TTTA-TATATTATTTT
1 TTTATTATATTATTTT
98071185 T
1 T
98071186 ATACTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTATTATATTATTTT
Found at i:98071194 original size:15 final size:14
Alignment explanation
Indices: 98071149--98071196 Score: 64
Period size: 13 Copynumber: 3.4 Consensus size: 14
98071139 GTGATTTTCC
98071149 TATTATTTATTATAT
1 TATTATTT-TTATAT
98071164 TATT-TTTTTATA-
1 TATTATTTTTATAT
98071176 TATTATTTTTATACT
1 TATTATTTTTATA-T
98071191 TATTAT
1 TATTAT
98071197 ATCATTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.13
13 13 0.43
14 3 0.10
15 10 0.33
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTATTTTTATAT
Found at i:98071197 original size:20 final size:17
Alignment explanation
Indices: 98071154--98071204 Score: 52
Period size: 20 Copynumber: 2.9 Consensus size: 17
98071144 TTTCCTATTA
98071154 TTTATTATATTA-TTTT
1 TTTATTATATTATTTTT
98071170 TTTA-TATATTATTTTT
1 TTTATTATATTATTTTT
*
98071186 ATACTTATTATATCATTTT
1 -T--TTATTATATTATTTT
98071205 CATTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 7 0.24
16 8 0.28
17 1 0.03
19 3 0.10
20 10 0.34
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTATATTATTTTT
Found at i:98071531 original size:14 final size:14
Alignment explanation
Indices: 98071493--98071530 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
98071483 TTATTATACG
98071493 TATTATATTTTATT
1 TATTATATTTTATT
*
98071507 TATCATATTTTATT
1 TATTATATTTTATT
98071521 TATT-TATTTT
1 TATTATATTTT
98071531 TTACCGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTATATTTTATT
Found at i:98073275 original size:24 final size:24
Alignment explanation
Indices: 98073246--98073298 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
98073236 CTTTATTGTT
98073246 ATTATTAGAAAAATTTCTATCTAA
1 ATTATTAGAAAAATTTCTATCTAA
* *
98073270 ATTATTCGGAAAATTTCTATCTAA
1 ATTATTAGAAAAATTTCTATCTAA
*
98073294 GTTAT
1 ATTAT
98073299 CACTTGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43
Consensus pattern (24 bp):
ATTATTAGAAAAATTTCTATCTAA
Found at i:98077834 original size:171 final size:171
Alignment explanation
Indices: 98077536--98077871 Score: 557
Period size: 171 Copynumber: 2.0 Consensus size: 171
98077526 ATGATTTTCC
* * * * *
98077536 TTTGCTATGGGAGATGCAAACTTTTGACCTGAGGATGTAGGATCTAGAGAAGCAGGAGAAAGGGA
1 TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGAAAAGGA
* * *
98077601 GCTGCTACAATTACGATCCTGTAACTGATCCATCTCACCATGTGAAGGTGGCACATGATCATGGG
66 GCTACTACAATTACGATCCTGTAACTGATCCATCCCACCATGTGAAGGTGGCACAGGATCATGGG
*
98077666 ATTGAGTTTTGGGTAATTCTTTGGAGCAGCAAATACAAACT
131 ATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATACAAACT
98077707 TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGAAAAGGA
1 TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGAAAAGGA
* *
98077772 GCTACTACAATTAC-ATTCCTGTAACTGATCCATCCCATCATGTGAAGGTGGGACAGGATCATGG
66 GCTACTACAATTACGA-TCCTGTAACTGATCCATCCCACCATGTGAAGGTGGCACAGGATCATGG
98077836 GATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATA
130 GATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATA
98077872 TGTTCCCTCT
Statistics
Matches: 153, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
170 1 0.01
171 152 0.99
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (171 bp):
TTTGCCATGGGAGATACAAACTTCTGACCTGAGGATGGAGGATCTAGAGAAGCAGGAGAAAAGGA
GCTACTACAATTACGATCCTGTAACTGATCCATCCCACCATGTGAAGGTGGCACAGGATCATGGG
ATTGAGTTTTGGGTAATTCTTTGGAGAAGCAAATACAAACT
Found at i:98084711 original size:17 final size:17
Alignment explanation
Indices: 98084689--98084738 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
98084679 ATTGGGATTG
98084689 AATTAAGAAAATT-ATTT
1 AATTAAG-AAATTAATTT
98084706 AATTAAGAAATTAATTT
1 AATTAAGAAATTAATTT
* **
98084723 AGTTAATTAATTAATT
1 AATTAAGAAATTAATT
98084739 AATGTTTTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 5 0.17
17 24 0.83
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
AATTAAGAAATTAATTT
Found at i:98086900 original size:27 final size:27
Alignment explanation
Indices: 98086868--98086938 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
98086858 AGAGTTCGAT
* *
98086868 ACAAAGGTTATTCTTTTAAAGTTCACT
1 ACAAAGGTTATTCTTTCAAAGTTCACC
* * *
98086895 ATAAAGGCTATTCTTTCAAAGTTCGCC
1 ACAAAGGTTATTCTTTCAAAGTTCACC
*
98086922 ACAAAAGTTATTCTTTC
1 ACAAAGGTTATTCTTTC
98086939 CTAACGTGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.38
Consensus pattern (27 bp):
ACAAAGGTTATTCTTTCAAAGTTCACC
Found at i:98088379 original size:31 final size:31
Alignment explanation
Indices: 98088343--98088405 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
98088333 TCAGAATTTA
98088343 TGTTTTATATTGAATACTAAGAGTTAAAACT
1 TGTTTTATATTGAATACTAAGAGTTAAAACT
*
98088374 TGTTTTATATTGAATACTAAGAGTTGAAACT
1 TGTTTTATATTGAATACTAAGAGTTAAAACT
98088405 T
1 T
98088406 ACTTATAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (31 bp):
TGTTTTATATTGAATACTAAGAGTTAAAACT
Found at i:98088926 original size:6 final size:6
Alignment explanation
Indices: 98088909--98088943 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
98088899 TCTGTGTACC
*
98088909 GTTACT GCTACT GTTACT GTTACT GTTACT GTTAC
1 GTTACT GTTACT GTTACT GTTACT GTTACT GTTAC
98088944 CCTTACGGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (6 bp):
GTTACT
Found at i:98088949 original size:18 final size:18
Alignment explanation
Indices: 98088900--98088949 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
98088890 ATGAGGTATT
98088900 CTGTGTACCGTTACTGCTA
1 CTGT-TACCGTTACTGCTA
* *
98088919 CTGTTACTGTTACTGTTA
1 CTGTTACCGTTACTGCTA
*
98088937 CTGTTACCCTTAC
1 CTGTTACCGTTAC
98088950 GGTGTATTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 23 0.85
19 4 0.15
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (18 bp):
CTGTTACCGTTACTGCTA
Found at i:98091845 original size:93 final size:93
Alignment explanation
Indices: 98091733--98091904 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
98091723 CGCCCATAAG
* *
98091733 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
98091798 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
98091826 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
98091891 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
98091905 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:98091901 original size:46 final size:46
Alignment explanation
Indices: 98091726--98091901 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
98091716 TGTAACCCGC
* *
98091726 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
98091772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
98091822 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
98091865 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
98091902 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:98104797 original size:22 final size:21
Alignment explanation
Indices: 98104757--98104797 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
98104747 AATAAGGGAC
*
98104757 ATTATGTATGTTTAATGAAGA
1 ATTATGTATGATTAATGAAGA
*
98104778 ATTATGTTATGATTATTGAA
1 ATTATG-TATGATTAATGAA
98104798 ATGTTTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (21 bp):
ATTATGTATGATTAATGAAGA
Found at i:98106695 original size:3 final size:3
Alignment explanation
Indices: 98106687--98106728 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
98106677 TATGGCAGCA
98106687 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98106729 TTAAGAAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:98110685 original size:25 final size:24
Alignment explanation
Indices: 98110652--98110700 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
98110642 GGATGGATTC
98110652 TTATTTTATTTAAT-ATTAATATAA
1 TTATTTTATTTAATGA-TAATATAA
98110676 TTATATTTATTTAATGATAATATAA
1 TTAT-TTTATTTAATGATAATATAA
98110701 ATATCAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.17
25 18 0.78
26 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAATGATAATATAA
Found at i:98116503 original size:11 final size:11
Alignment explanation
Indices: 98116487--98116511 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98116477 TTTTAAATTT
98116487 AAAAATTATAA
1 AAAAATTATAA
98116498 AAAAATTATAA
1 AAAAATTATAA
98116509 AAA
1 AAA
98116512 CTATTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:98116560 original size:39 final size:40
Alignment explanation
Indices: 98116481--98116561 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 40
98116471 TAATTTTTTT
* *
98116481 AAATTTAAAAATTATAAAAAAATTATAAAAACTATTTTTA
1 AAATTTAAAAATTATAAAAAAAGTATAAAAACTATATTTA
* *
98116521 AAATTTAAAAATTAT-TAAAAAGTATAAATACT-TAATTTA
1 AAATTTAAAAATTATAAAAAAAGTATAAAAACTAT-ATTTA
98116560 AA
1 AA
98116562 TTATTTTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.03
39 20 0.56
40 15 0.42
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.37
Consensus pattern (40 bp):
AAATTTAAAAATTATAAAAAAAGTATAAAAACTATATTTA
Found at i:98117265 original size:22 final size:20
Alignment explanation
Indices: 98117242--98117280 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
98117232 TTTTATGATA
*
98117242 AAATATATTATTATATATTTT
1 AAATATATT-TAATATATTTT
98117263 AAATATATTTAATATATT
1 AAATATATTTAATATATT
98117281 ATGGTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AAATATATTTAATATATTTT
Found at i:98118528 original size:29 final size:27
Alignment explanation
Indices: 98118467--98118538 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
98118457 ATTTAGTAAT
* *
98118467 AATAAAATTATATTTTATTTTTTTAAAA
1 AATAAAAATATA-ATTATTTTTTTAAAA
*
98118495 AATAAAAATTTAATTATTTTTTTAAAA
1 AATAAAAATATAATTATTTTTTTAAAA
*
98118522 ATTATAAAGATATAATT
1 A--ATAAAAATATAATT
98118539 TATTAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 15 0.41
28 10 0.27
29 12 0.32
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (27 bp):
AATAAAAATATAATTATTTTTTTAAAA
Found at i:98118937 original size:35 final size:35
Alignment explanation
Indices: 98118880--98118949 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
98118870 ATGTTCTTTC
*
98118880 ATAATTAAAAATATGTAGTATTTAAGAGTATTTTA
1 ATAATTAAAAATATATAGTATTTAAGAGTATTTTA
* *
98118915 ATAATTAAAAA-ATTATATTATTTGAGAGTATTTTA
1 ATAATTAAAAATA-TATAGTATTTAAGAGTATTTTA
98118950 GTCTTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
34 1 0.03
35 30 0.97
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (35 bp):
ATAATTAAAAATATATAGTATTTAAGAGTATTTTA
Found at i:98119572 original size:21 final size:21
Alignment explanation
Indices: 98119528--98119576 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
98119518 AAAAATGATA
* *
98119528 AAAAAATTGATTTAATCCGAT
1 AAAAATTTGATTTAATCAGAT
**
98119549 AAAAATTTGATTTAATCATTT
1 AAAAATTTGATTTAATCAGAT
98119570 AAAAATT
1 AAAAATT
98119577 ATAAATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (21 bp):
AAAAATTTGATTTAATCAGAT
Found at i:98122907 original size:20 final size:21
Alignment explanation
Indices: 98122882--98122934 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
98122872 CAAAGATAAA
98122882 AAAGTATCGATACCCTTA-AC
1 AAAGTATCGATACCCTTAGAC
* *
98122902 AAAGTATCTATA-CCTTAGTC
1 AAAGTATCGATACCCTTAGAC
98122922 AAAGTATCGATAC
1 AAAGTATCGATAC
98122935 TATTTTACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.18
20 23 0.82
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (21 bp):
AAAGTATCGATACCCTTAGAC
Found at i:98124474 original size:18 final size:19
Alignment explanation
Indices: 98124453--98124491 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
98124443 AATTTTAATG
*
98124453 TAATATTTTTTAATAT-TT
1 TAATAATTTTTAATATATT
98124471 TAATAATTTTTAATATATT
1 TAATAATTTTTAATATATT
98124490 TA
1 TA
98124492 TGTCATGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TAATAATTTTTAATATATT
Found at i:98127122 original size:18 final size:18
Alignment explanation
Indices: 98127091--98127129 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
98127081 AAAATAAATA
* *
98127091 TTATTTATTCAATTAATT
1 TTATTGATTAAATTAATT
98127109 TTATTGATTAAATTAATT
1 TTATTGATTAAATTAATT
98127127 TTA
1 TTA
98127130 CATTTTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATTGATTAAATTAATT
Found at i:98129466 original size:27 final size:27
Alignment explanation
Indices: 98129428--98129482 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
98129418 ATATATAAAG
98129428 TATAATAATAAAATTAGTCCTTAATCT
1 TATAATAATAAAATTAGTCCTTAATCT
98129455 TATAATAATAAAATTAGTCCTTAATCT
1 TATAATAATAAAATTAGTCCTTAATCT
98129482 T
1 T
98129483 TACATATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.42
Consensus pattern (27 bp):
TATAATAATAAAATTAGTCCTTAATCT
Found at i:98129869 original size:11 final size:10
Alignment explanation
Indices: 98129817--98129874 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 10
98129807 AATTATAAAA
98129817 TTTTTATAACT
1 TTTTTATAA-T
98129828 TTTTTATAAT
1 TTTTTATAAT
*
98129838 TTGTGTT-TATT
1 TT-T-TTATAAT
98129849 ATTTTTATAAT
1 -TTTTTATAAT
98129860 TTTTTAATAAT
1 TTTTT-ATAAT
98129871 TTTT
1 TTTT
98129875 AAATTTTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
10 10 0.25
11 26 0.65
12 4 0.10
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:98137277 original size:5 final size:5
Alignment explanation
Indices: 98137267--98137293 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
98137257 TAAAAGGCCT
98137267 TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TT
98137294 CATTCTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTATA
Found at i:98154849 original size:13 final size:13
Alignment explanation
Indices: 98154831--98154858 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
98154821 TATAATCATT
98154831 TTATTATTAATAA
1 TTATTATTAATAA
98154844 TTATTATTAATAA
1 TTATTATTAATAA
98154857 TT
1 TT
98154859 TCTTAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATTATTAATAA
Found at i:98161179 original size:22 final size:22
Alignment explanation
Indices: 98161154--98161197 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
98161144 TTGATAGGAG
98161154 ATGAAAAGATATAATGGATGTT
1 ATGAAAAGATATAATGGATGTT
98161176 ATGAAAAGATATAATGGATGTT
1 ATGAAAAGATATAATGGATGTT
98161198 TTGTACAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.32
Consensus pattern (22 bp):
ATGAAAAGATATAATGGATGTT
Found at i:98162802 original size:27 final size:28
Alignment explanation
Indices: 98162769--98162845 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
98162759 TATACCTTAT
*
98162769 TTATTTTGAAATTATTTATATATCTT-C
1 TTATTTTGAAATTATTTATATATATTAC
* *
98162796 TTATTTT-AAACT-TTTATATATATTAT
1 TTATTTTGAAATTATTTATATATATTAC
*
98162822 TTATTTTG-GATTATTTATATATAT
1 TTATTTTGAAATTATTTATATATAT
98162846 ATATATTTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 11 0.26
26 13 0.31
27 18 0.43
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (28 bp):
TTATTTTGAAATTATTTATATATATTAC
Found at i:98162900 original size:29 final size:28
Alignment explanation
Indices: 98162867--98162937 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
98162857 ATTTAAACTG
98162867 TTTTTATATATTATTTATTTCAA-ATTT
1 TTTTTATATATTATTTATTTCAATATTT
* *
98162894 CTCTTTTACATATTATTTATTTTAATTATTT
1 -T-TTTTATATATTATTTATTTCAA-TATTT
98162925 TTTTTATATATTA
1 TTTTTATATATTA
98162938 CCATTACTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 1 0.03
29 31 0.84
30 1 0.03
31 4 0.11
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (28 bp):
TTTTTATATATTATTTATTTCAATATTT
Found at i:98163085 original size:14 final size:13
Alignment explanation
Indices: 98163054--98163104 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
98163044 GTTTCACATA
*
98163054 TATTATTTATTTT
1 TATTATTTATATT
98163067 ATATTATTTATATCT
1 -TATTATTTATAT-T
*
98163082 TATT-TCTTATATA
1 TATTAT-TTATATT
98163095 TATTATTTAT
1 TATTATTTAT
98163105 GTTAAATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
13 9 0.28
14 22 0.69
15 1 0.03
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTATTTATATT
Found at i:98167547 original size:3 final size:3
Alignment explanation
Indices: 98167536--98167898 Score: 106
Period size: 3 Copynumber: 119.0 Consensus size: 3
98167526 AACGTAATAA
* * * * *
98167536 TAT TTT TAT TAT T-T TAT TAT TAT TTT TACCT TTT TAT TAC TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT TAT
* * * * *
98167582 TAT TAACC TAC TAT TTT TAT TTT TAT TAT TA- TAG TAT TAT TAT TAT
1 TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
98167628 TTT TA- TAT TGT TAT TAT TAT TAG CACG TA- TAT TAT TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT T-AT
* * * *
98167673 GCAT TAT TGT TAT TTT CTAT T-T TAT TAT TACT T-T TAT TAC TAT T-T
1 -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* *
98167718 TTT CTAT TAT TAT TAT T-T TCAT TACT TCCAT TAT TAT TAT CAT TAT
1 TAT -TAT TAT TAT TAT TAT T-AT TA-T T--AT TAT TAT TAT TAT TAT
* * * * *
98167764 TTT CTAT TAT CAT TAA TA- TGT TGT T-T GT-T TAT TAT TAT TAT TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * * * * * *
98167808 TAT TTT TAA CAC TAT TAT CAT TAT TA- TATT TACCT TTT TTT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA--T TAT TAT TAT TAT
* * * *
98167855 TAT TAC CAT TA- TAT ATAT T-T TAT TAT TAT TAC TAT TAT TTT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98167899 GATCCGTCCT
Statistics
Matches: 266, Mismatches: 62, Indels: 64
0.68 0.16 0.16
Matches are distributed among these distances:
2 25 0.09
3 208 0.78
4 25 0.09
5 7 0.03
6 1 0.00
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:98167561 original size:20 final size:20
Alignment explanation
Indices: 98167536--98167757 Score: 78
Period size: 20 Copynumber: 10.6 Consensus size: 20
98167526 AACGTAATAA
*
98167536 TATTTTTATTATTTTATTAT
1 TATTATTATTATTTTATTAT
* * *
98167556 TATTTTTACCT-TTTTATTAC
1 TATTATTA-TTATTTTATTAT
* *** *
98167576 TAATATTATTAACCTACTAT
1 TATTATTATTATTTTATTAT
* * *
98167596 TTTTATTTTTATTATTA-TAG
1 TATTATTATTATT-TTATTAT
98167616 TATTATTATTATTTT-TATAT
1 TATTATTATTATTTTAT-TAT
* **
98167636 TGTTATTATTATTAGCACGTATAT
1 TATTATTATTATT-TTA--T-TAT
* **
98167660 TATTATTATTAATGCATTAT
1 TATTATTATTATTTTATTAT
* *
98167680 TGTTATTTTCTATTTTATTAT
1 TATTATTAT-TATTTTATTAT
98167701 TACTT-TTATTACTATTT-TT-T
1 TA-TTATTATTA-T-TTTATTAT
98167721 CTATTATTATTATTTTCATTACT
1 -TATTATTATTATTTT-ATTA-T
98167744 TCCATTATTATTAT
1 T--ATTATTATTAT
98167758 CATTATTTTC
Statistics
Matches: 149, Mismatches: 32, Indels: 38
0.68 0.15 0.17
Matches are distributed among these distances:
19 6 0.04
20 77 0.52
21 29 0.19
22 6 0.04
23 4 0.03
24 27 0.18
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.63
Consensus pattern (20 bp):
TATTATTATTATTTTATTAT
Found at i:98168986 original size:18 final size:20
Alignment explanation
Indices: 98168944--98168980 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98168934 ATATTTTATG
*
98168944 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATAAGATATAT
98168963 ATTATTTTAATAAGATAT
1 ATTATTTTAATAAGATAT
98168981 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATAAGATATAT
Found at i:98171194 original size:46 final size:46
Alignment explanation
Indices: 98171142--98171460 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
98171132 ATTGTGCTCT
98171142 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
98171188 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
98171234 CTAATATGAAACGTGTAAAACCATGGTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
98171279 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
98171325 CTAATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
98171371 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * *
98171417 ATGACA-GAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
98171461 TCATGTCAAA
Statistics
Matches: 247, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
45 43 0.17
46 204 0.83
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:98171317 original size:91 final size:91
Alignment explanation
Indices: 98171145--98171414 Score: 450
Period size: 91 Copynumber: 2.9 Consensus size: 91
98171135 GTGCTCTCTG
*
98171145 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACC
1 ATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-ACCTGATATGAAATGTGTAAGACC
*
98171210 ATGGTTGAAAAATACCATGGCAGCCTA
65 ATGGTTGAAAGATACCATGGCAGCCTA
* *
98171237 ATATGAAACGTGTAAAACCATGGTTGAAAGATACCATGGCACCTGATATGAAACGTGTAAGACCA
1 ATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCACCTGATATGAAATGTGTAAGACCA
98171302 TGGTTGAAAGATACCATGGCAGCCTA
66 TGGTTGAAAGATACCATGGCAGCCTA
* * **
98171328 ATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACC
1 ATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCA-CCTGATATGAAATGTGTAAGACC
98171393 ATGGTTGAAAGATACCATGGCA
65 ATGGTTGAAAGATACCATGGCA
98171415 ACATGACAGA
Statistics
Matches: 167, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
91 89 0.53
92 78 0.47
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (91 bp):
ATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCACCTGATATGAAATGTGTAAGACCA
TGGTTGAAAGATACCATGGCAGCCTA
Found at i:98171394 original size:137 final size:137
Alignment explanation
Indices: 98171142--98171414 Score: 438
Period size: 137 Copynumber: 2.0 Consensus size: 137
98171132 ATTGTGCTCT
* * *
98171142 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAACGTGTAAG
* **
98171207 ACCATGGTTGAAAAATACCATGGCAGCCTAATATGAAACGTGTAAAACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAAATACCATGGCAGCCTAACATGAAACGAATAAAACCATGGTTGAAAGATACC
98171272 ATGGCAC
131 ATGGCAC
*
98171279 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTAATATGAAACGTGTAAG
1 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAACGTGTAAG
* * * * *
98171344 ACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAAATACCATGGCAGCCTAACATGAAACGAATAAAACCATGGTTGAAAGATACC
98171409 ATGGCA
131 ATGGCA
98171415 ACATGACAGA
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
137 124 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (137 bp):
CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAACGTGTAAG
ACCATGGTTGAAAAATACCATGGCAGCCTAACATGAAACGAATAAAACCATGGTTGAAAGATACC
ATGGCAC
Found at i:98171483 original size:137 final size:135
Alignment explanation
Indices: 98171155--98171460 Score: 337
Period size: 137 Copynumber: 2.2 Consensus size: 135
98171145 ATATGAAATG
* * * * * *
98171155 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAA
1 TGTAAGACCATAGTTGAAAGACACCATGGC-A-CTAATATCAAACGTATAAGACCATGGTTGAAA
* ** * *
98171220 AATACCATGGCAGCCTAATATGAAACGTGTAAAACCATGGTTGAAAGATACCATGGCACCTGATA
64 AATACCATGGCAGCCTAACATGAAACGAATAAAACCATGGTTGAAAGATACCATGGCACATGACA
*
98171285 TGAAACG
129 TGAAACA
* * * *
98171292 TGTAAGACCATGGTTGAAAGATACCATGGCAGCCTAATATGAAACGTGTAAGACCATGGTTGAAA
1 TGTAAGACCATAGTTGAAAGACACCATGGCA--CTAATATCAAACGTATAAGACCATGGTTGAAA
* * * * *
98171357 GATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
64 AATACCATGGCAGCCTAACATGAAACGAATAAAACCATGGTTGAAAGATACCATGGC-ACATGAC
98171422 A-GAAA-A
128 ATGAAACA
*
98171428 TAAGTAAGACCATAGTTGAAAGACACTATGGCA
1 T--GTAAGACCATAGTTGAAAGACACCATGGCA
98171461 TCATGTCAAA
Statistics
Matches: 149, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
136 2 0.01
137 114 0.77
138 33 0.22
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (135 bp):
TGTAAGACCATAGTTGAAAGACACCATGGCACTAATATCAAACGTATAAGACCATGGTTGAAAAA
TACCATGGCAGCCTAACATGAAACGAATAAAACCATGGTTGAAAGATACCATGGCACATGACATG
AAACA
Found at i:98173530 original size:52 final size:53
Alignment explanation
Indices: 98173433--98173540 Score: 130
Period size: 52 Copynumber: 2.1 Consensus size: 53
98173423 TAAAAATAAC
* * *
98173433 TTAACCCTCAACATTTATACATTATGTCACTTTAGTCTTGATTTTA-AAAATT
1 TTAACCCTCAACATTTATACACTATGTCAATTTAGACTTGATTTTATAAAATT
* ** *
98173485 TTAACCCTCAACATTTATACACTATGT-AATTTGAGAGTTTTTTTTATACAATT
1 TTAACCCTCAACATTTATACACTATGTCAATTT-AGACTTGATTTTATAAAATT
98173538 TTA
1 TTA
98173541 CTTTTCTTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
51 4 0.09
52 35 0.74
53 8 0.17
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45
Consensus pattern (53 bp):
TTAACCCTCAACATTTATACACTATGTCAATTTAGACTTGATTTTATAAAATT
Found at i:98174994 original size:22 final size:22
Alignment explanation
Indices: 98174954--98174999 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
98174944 TGTAATAAAT
*
98174954 AATTTAAAAAATAAAAAATCTCA
1 AATTAAAAAAATAAAAAAT-TCA
98174977 AATTAAAAAAAT-AAAAATTCA
1 AATTAAAAAAATAAAAAATTCA
98174998 AA
1 AA
98175000 ATAATTAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 6 0.27
23 11 0.50
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AATTAAAAAAATAAAAAATTCA
Found at i:98175120 original size:25 final size:25
Alignment explanation
Indices: 98175086--98175136 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
98175076 AAATTCGACA
*
98175086 TTAATTAAAAAAATAAAAGTTAAAT
1 TTAACTAAAAAAATAAAAGTTAAAT
*
98175111 TTAACTAAAAAAATAAAGGTTAAAT
1 TTAACTAAAAAAATAAAAGTTAAAT
98175136 T
1 T
98175137 AATGAAAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (25 bp):
TTAACTAAAAAAATAAAAGTTAAAT
Found at i:98177781 original size:13 final size:11
Alignment explanation
Indices: 98177754--98177796 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
98177744 AGTTAAAAAT
98177754 TATTTTATTAA
1 TATTTTATTAA
98177765 TATTTTACTTAA
1 TATTTTA-TTAA
*
98177777 -ATATTTATTAT
1 TAT-TTTATTAA
98177788 TATTTTATT
1 TATTTTATT
98177797 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:98179531 original size:30 final size:30
Alignment explanation
Indices: 98179495--98179669 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
98179485 ACTTTTCTCA
*
98179495 ACTAGCCACACCTTTTCCACTACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
98179525 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
98179555 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
98179585 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* ** *
98179615 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-TTCCACCACCAACTCC
* *
98179645 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-TTCCACCACCA
98179670 CTTGTACCTA
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
29 3 0.02
30 128 0.98
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:98180195 original size:23 final size:23
Alignment explanation
Indices: 98180158--98180285 Score: 70
Period size: 23 Copynumber: 5.5 Consensus size: 23
98180148 CTTTTTTTGT
98180158 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
98180181 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
98180203 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
98180226 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATATTA
* *
98180249 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
98180274 TATTATTTATAT
1 TATTATATATAT
98180286 ATATATATAT
Statistics
Matches: 78, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
21 8 0.10
22 15 0.19
23 25 0.32
24 8 0.10
25 22 0.28
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:98180261 original size:25 final size:26
Alignment explanation
Indices: 98180233--98180291 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
98180223 CTATATTACG
*
98180233 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* * *
98180258 TATATCT-TTAATATTATATTATTTA
1 TATATATATTAATACTATATTATGTA
98180283 TATATATAT
1 TATATATAT
98180292 ATATTTTTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 2 0.07
25 24 0.89
26 1 0.04
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:98180275 original size:16 final size:18
Alignment explanation
Indices: 98180256--98180300 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
98180246 CTATTTTATG
*
98180256 TATATATCTTTA-ATAT-
1 TATATATATTTATATATA
98180272 TATAT-TATTTATATATA
1 TATATATATTTATATATA
*
98180289 TATATATTTTTA
1 TATATATATTTA
98180301 CATGTTATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 5 0.21
18 5 0.21
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATATATTTATATATA
Found at i:98180295 original size:81 final size:81
Alignment explanation
Indices: 98180210--98180360 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
98180200 ATATATTAGG
* * *
98180210 TATA-TTTTAAAT-TCTATATTACGTATATATATTATACTATTTTATGTATATATCTTTAATATT
1 TATATTTTTAAATGT-TATATTACGTATATATATTA-ACTATATTATGTATATATCTTTAACACT
98180273 ATATTATTTATATATATA
64 ATATTATTTATATATATA
* * * * * *
98180291 TATATTTTTACATGTTATCTTATGTATATATCTTAACTATATTATGTATGTATTTTTAACACTAT
1 TATATTTTTAAATGTTATATTACGTATATATATTAACTATATTATGTATATATCTTTAACACTAT
98180356 ATTAT
66 ATTAT
98180361 GTACATATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
81 34 0.58
82 24 0.41
83 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (81 bp):
TATATTTTTAAATGTTATATTACGTATATATATTAACTATATTATGTATATATCTTTAACACTAT
ATTATTTATATATATA
Found at i:98180321 original size:34 final size:33
Alignment explanation
Indices: 98180256--98180321 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
98180246 CTATTTTATG
*
98180256 TATATATCTTTAATATTATATTATTTATATATA
1 TATATATCTTTAATATTATATTATGTATATATA
* * *
98180289 TATATATTTTTACATGTTATCTTATGTATATAT
1 TATATATCTTTA-ATATTATATTATGTATATAT
98180322 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (33 bp):
TATATATCTTTAATATTATATTATGTATATATA
Found at i:98180336 original size:22 final size:24
Alignment explanation
Indices: 98180310--98180368 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
98180300 ACATGTTATC
98180310 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
98180332 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
98180357 TTATGTACATAT
1 TTATGTATATAT
98180369 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:98180358 original size:25 final size:25
Alignment explanation
Indices: 98180326--98180374 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
98180316 ATATATCTTA
**
98180326 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
98180351 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
98180375 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:98180551 original size:16 final size:15
Alignment explanation
Indices: 98180527--98180574 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
98180517 TAATTATTAT
*
98180527 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
98180543 TATTTTAATATTTTA
1 TATTTTAATATTTTA
98180558 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
98180574 T
1 T
98180575 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:98180562 original size:7 final size:8
Alignment explanation
Indices: 98180527--98180578 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
98180517 TAATTATTAT
*
98180527 TATTCTAA
1 TATTTTAA
*
98180535 TATTTTGA
1 TATTTTAA
98180543 TATTTTAA
1 TATTTTAA
98180551 TATTTT-A
1 TATTTTAA
98180558 TATTTTATA
1 TATTTTA-A
*
98180567 TATTTTAT
1 TATTTTAA
98180575 TATT
1 TATT
98180579 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:98190552 original size:71 final size:70
Alignment explanation
Indices: 98190453--98190615 Score: 188
Period size: 71 Copynumber: 2.3 Consensus size: 70
98190443 CTTTTCAAGG
* * *
98190453 AAAATCAACTCATATTGTGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGTGAGAGATGAGTTGAGCCTCAAGACACGCTAAGGTATTTTTAATTTAT
98190518 GTTTT
66 GTTTT
** * *
98190523 CAAAATCAACTCATATTGAT-AGA-AGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTTAGTT
1 -AAAATCAACTCATATTG-TGAGAGA-TGAGTTGAGCCTCAAGACACGCTAAGGTATTTTTAATT
98190586 TATGTTTT
63 TATGTTTT
** *
98190594 -AAATTGACTCATATTGCGAGAG
1 AAAATCAACTCATATTGTGAGAG
98190616 GTAAGTTAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
69 17 0.22
70 1 0.01
71 59 0.76
72 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (70 bp):
AAAATCAACTCATATTGTGAGAGATGAGTTGAGCCTCAAGACACGCTAAGGTATTTTTAATTTAT
GTTTT
Found at i:98190736 original size:122 final size:122
Alignment explanation
Indices: 98190507--98190875 Score: 578
Period size: 122 Copynumber: 3.0 Consensus size: 122
98190497 GTTGAGGTAT
* * *
98190507 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGATAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTCTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
*
98190571 AAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTAAGTTAAGCC
66 GAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTAAGTTAAGCC
98190628 TTTTAATTCTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTCTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
* *
98190693 GAGGTATTTTTAGTTTATGTTTTAAATTGGCTCATATTGCGAGAGGTGAGTTAAGCC
66 GAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTAAGTTAAGCC
98190750 TTTTAATTCTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTCTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
* * * * * * * *
98190815 GAGGTATTTTCAATTTTTGTGTTTTGATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 GAGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTAAGTTAAGCC
98190875 T
1 T
98190876 CAGGACACGC
Statistics
Matches: 230, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
121 11 0.05
122 179 0.78
123 1 0.00
124 12 0.05
125 27 0.12
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (122 bp):
TTTTAATTCTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTAAGTTAAGCC
Found at i:98190889 original size:72 final size:72
Alignment explanation
Indices: 98190772--98190911 Score: 235
Period size: 72 Copynumber: 1.9 Consensus size: 72
98190762 TTTTTCAAAA
* * * *
98190772 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTGT
98190837 TTTGATT
66 TTTGATT
*
98190844 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTGT
98190909 TTT
66 TTT
98190912 TTCCAATTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTGT
TTTGATT
Found at i:98190920 original size:18 final size:18
Alignment explanation
Indices: 98190893--98190928 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
98190883 CGCTGAGGTA
98190893 TTTTCAATTTCTG-TTTT
1 TTTTCAATTTCTGCTTTT
98190910 TTTTCCAATTTCTGCTTTT
1 TTTT-CAATTTCTGCTTTT
98190929 CAAAATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 9 0.53
19 4 0.24
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.67
Consensus pattern (18 bp):
TTTTCAATTTCTGCTTTT
Found at i:98191118 original size:156 final size:156
Alignment explanation
Indices: 98190916--98191432 Score: 511
Period size: 156 Copynumber: 3.3 Consensus size: 156
98190906 TTTTTTTTCC
* *
98190916 AATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGCC
1 AATTTCTGCTTTTCAAAATATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGCC
*
98190981 GAGGTATTTTCAAATTCGGTCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCAACTCA
66 GAGGTATTTTCAAATTCTGTCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCAACTCA
98191046 TATTGAAAGAGGTGAGTTGAGCCTTTT
131 TATTG-AAGAGGTGAGTTGAGCCTTTT
* * * * *
98191073 AATTTCTGTTTTTCAAAA-ATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTTG-CTCACGTGC
1 AATTTCTGCTTTTCAAAATATCAACTCATATTGCGAGAAGTGAGTTGAGCC-TCGAGTCACATGC
* * * * *** * * ** * * ** * **
98191136 TGAGCTATTTTCGATTTCTG-CTTTTCAAA----AGAATCAACTCATA--TTGCGAGAGGTGAGT
65 CGAGGTATTTTCAAATTCTGTC-TTTCAAACTCTATTTTTAATTTTTACTTTTC-AAAAATCAAC
* *** * * * *
98191194 TGAGCCT--CG-GGTCACACGCTGAGGCGTTTCT
128 TCATATTGAAGAGGT--GA-GTTGA-GCCTTT-T
* *
98191225 AATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGCC
1 AATTTCTGCTTTTCAAAATATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGCC
*
98191290 GAGGTATTTTCAAATTCTATCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCAACTCA
66 GAGGTATTTTCAAATTCTGTCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCAACTCA
98191355 TATTGAGAGAGGTGAGTTGAGCCTTTT
131 TATTGA-AGAGGTGAGTTGAGCCTTTT
*
98191382 AATTTCTGTTTTTCAAAA-ATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AATTTCTGCTTTTCAAAATATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
98191433 TTGCTCACGT
Statistics
Matches: 268, Mismatches: 71, Indels: 43
0.70 0.19 0.11
Matches are distributed among these distances:
147 3 0.01
148 1 0.00
149 1 0.00
150 7 0.03
151 12 0.04
152 27 0.10
153 58 0.22
154 1 0.00
155 1 0.00
156 89 0.33
157 44 0.16
158 12 0.04
159 7 0.03
160 1 0.00
161 1 0.00
162 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (156 bp):
AATTTCTGCTTTTCAAAATATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGCC
GAGGTATTTTCAAATTCTGTCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCAACTCA
TATTGAAGAGGTGAGTTGAGCCTTTT
Found at i:98191199 original size:77 final size:75
Alignment explanation
Indices: 98191063--98191581 Score: 347
Period size: 77 Copynumber: 6.8 Consensus size: 75
98191053 AGAGGTGAGT
* * * *
98191063 TGAGCCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTT
1 TGAGCATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
* *
98191126 GCTCACGTGC
66 GGTCACATGC
*
98191136 TGAGCTATTTTCGATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TGAGC-ATTTTCAATTTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
** *
98191201 CGGGTCACACGC
64 TTGGTCACATGC
* * *
98191213 TGAGGC-GTTTCTAATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCC-
1 TGA-GCATTTTC-AATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
98191276 TCGAGTCACATGC
64 TTG-GTCACATGC
* * * * * * * ** *** **** * ** * *
98191289 CGAGGTATTTTCAAATTCT-ATCTTTC--AAACTCTATTTTTAATTTTTACTTTTCAAAAATCAA
1 TGA-GCATTTTCAATTTCTGCT-TTTCAAAAAATCAACTCAT-ATTGCGAGAGGT--GAGTTGAG
** ** *
98191351 CTCATATTGAGAGAGGTGAGT
61 C-C-T-TTG-GTCACAT--GC
* * *
98191372 TGAGCCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTT
1 TGAGCATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
* *
98191435 GCTCACGTGC
66 GGTCACATGC
*
98191445 TGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
1 TGAGC-ATTTTCAATTTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
** *
98191510 CGGGTCACACGC
64 TTGGTCACATGC
*
98191522 TGAGGCGTTTTCAATTTCTGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TGA-GCATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
98191582 TCTCGGGCCA
Statistics
Matches: 338, Mismatches: 83, Indels: 48
0.72 0.18 0.10
Matches are distributed among these distances:
73 11 0.03
74 16 0.05
75 65 0.19
76 69 0.20
77 129 0.38
78 6 0.02
79 4 0.01
81 21 0.06
82 14 0.04
83 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (75 bp):
TGAGCATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT
GGTCACATGC
Found at i:98191292 original size:309 final size:309
Alignment explanation
Indices: 98190911--98191797 Score: 1255
Period size: 309 Copynumber: 2.8 Consensus size: 309
98190901 TTCTGTTTTT
*
98190911 TTTCCAATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCAC
1 TTTCTAATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCAC
*
98190976 ATGCCGAGGTATTTTCAAATTCGGTCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCA
66 ATGCCGAGGTATTTTCAAATTCGATCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCA
*
98191041 ACTCATATTGAAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGT
131 ACTCATATTGAAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
*
98191106 GAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCGATTTCTGCTTTTCAAAAGAATC
196 GAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATC
*
98191171 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCG
261 AACTCATATTGCGAGAGGTGAGTTGAACCTCGGGTCACACGCTGAGGCG
98191220 TTTCTAATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCAC
1 TTTCTAATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCAC
*
98191285 ATGCCGAGGTATTTTCAAATTCTATCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCA
66 ATGCCGAGGTATTTTCAAATTCGATCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCA
*
98191350 ACTCATATTGAGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
131 ACTCATATTGAAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
98191415 GAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATC
196 GAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATC
98191480 AACTCATATTGCGAGAGGTGAGTTGAACCTCGGGTCACACGCTGAGGCG
261 AACTCATATTGCGAGAGGTGAGTTGAACCTCGGGTCACACGCTGAGGCG
* * * *
98191529 TTT-TCAATTTCTGCTTTTCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCA
1 TTTCT-AATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
** * * * *
98191592 CACACTGAGGTCTTTTCAAATTCTGTTTTTAATTTCTGCTTTTCAAATTCTGTTTTTTTCAATTT
65 CATGCCGAGGTATTTTCAAATTC-G------A----T-C-TTTCAAA--CTCTATTTTT-AATTT
* * ** * * *
98191657 ATATTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTTGGGTTCACATGTCGAGGT
114 TTACTTTTCAAAAATCAACTCATATTGAAAGAGGTGAGTTGAGCCTT---TT-A-ATTTC--TGT
* * *
98191722 ATTTTC-AAAATCTACT--T-TTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
172 -TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTT
*
98191783 TCAATTTCTGTTTTT
236 TCAATTTCTGCTTTT
98191798 AATGTCTAGT
Statistics
Matches: 525, Mismatches: 28, Indels: 31
0.90 0.05 0.05
Matches are distributed among these distances:
308 56 0.11
309 323 0.62
315 1 0.00
319 1 0.00
320 1 0.00
321 7 0.01
323 8 0.02
324 48 0.09
327 2 0.00
328 57 0.11
329 5 0.01
331 11 0.02
332 5 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (309 bp):
TTTCTAATTTCTGCTTTTCAAAATATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGAGTCAC
ATGCCGAGGTATTTTCAAATTCGATCTTTCAAACTCTATTTTTAATTTTTACTTTTCAAAAATCA
ACTCATATTGAAAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
GAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAGAATC
AACTCATATTGCGAGAGGTGAGTTGAACCTCGGGTCACACGCTGAGGCG
Found at i:98191600 original size:75 final size:74
Alignment explanation
Indices: 98191372--98191621 Score: 299
Period size: 75 Copynumber: 3.3 Consensus size: 74
98191362 AGAGGTGAGT
* * * **
98191372 TGAGCCTTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TT
1 TGAGGCTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
**
98191435 GCTCACGTGC
66 GC-CACACGC
*
98191445 TGA-GCTATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACC
1 TGAGGC--TTTTCAATTTCTGCTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
98191509 TCGGGTCACACGC
62 TCGGGCCACACGC
*
98191522 TGAGGCGTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCG
1 TGAGGC-TTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
98191587 GGCCACACAC
65 GGCCACACGC
* *
98191597 TGAGGTCTTTTCAAATTCTGTTTTT
1 TGAGG-CTTTTCAATTTCTGCTTTT
98191622 AATTTCTGCT
Statistics
Matches: 153, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
72 1 0.01
73 3 0.02
74 4 0.03
75 76 0.50
76 7 0.05
77 59 0.39
78 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (74 bp):
TGAGGCTTTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
GCCACACGC
Found at i:98191634 original size:14 final size:13
Alignment explanation
Indices: 98191604--98191648 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
98191594 CACTGAGGTC
*
98191604 TTTTCAAATTCTG
1 TTTTTAAATTCTG
*
98191617 TTTTTAATTTCTG
1 TTTTTAAATTCTG
*
98191630 CTTTTCAAATTCTG
1 -TTTTTAAATTCTG
98191644 TTTTT
1 TTTTT
98191649 TTCAATTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.18, C:0.13, G:0.07, T:0.62
Consensus pattern (13 bp):
TTTTTAAATTCTG
Found at i:98192451 original size:30 final size:30
Alignment explanation
Indices: 98192415--98192589 Score: 237
Period size: 30 Copynumber: 5.8 Consensus size: 30
98192405 ACTTTTCTCA
*
98192415 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
98192445 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
98192475 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
98192505 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
98192535 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
98192565 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
98192590 CTTGTACCTA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
29 3 0.02
30 129 0.98
ACGTcount: A:0.27, C:0.49, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:98193111 original size:23 final size:23
Alignment explanation
Indices: 98193074--98193201 Score: 70
Period size: 23 Copynumber: 5.5 Consensus size: 23
98193064 ATTTTTTTGT
98193074 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
98193097 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
98193119 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
98193142 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATATTA
* *
98193165 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
98193190 TATTATTTATAT
1 TATTATATATAT
98193202 ATATATATAT
Statistics
Matches: 78, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
21 8 0.10
22 15 0.19
23 25 0.32
24 8 0.10
25 22 0.28
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:98193177 original size:25 final size:26
Alignment explanation
Indices: 98193149--98193207 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
98193139 CTATATTACG
*
98193149 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* * *
98193174 TATATCT-TTAATATTATATTATTTA
1 TATATATATTAATACTATATTATGTA
98193199 TATATATAT
1 TATATATAT
98193208 ATATTTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 2 0.07
25 24 0.89
26 1 0.04
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:98193211 original size:35 final size:35
Alignment explanation
Indices: 98193172--98193238 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 35
98193162 CTATTTTATG
*
98193172 TATATA-TCTTTA-ATATTATATTATTTATATATA
1 TATATATTCTTTACATATTATATTATGTATATATA
* * *
98193205 TATATATTTTTTACATGTTATCTTATGTATATAT
1 TATATATTCTTTACATATTATATTATGTATATAT
98193239 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 6 0.21
34 5 0.18
35 17 0.61
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.58
Consensus pattern (35 bp):
TATATATTCTTTACATATTATATTATGTATATATA
Found at i:98193274 original size:25 final size:25
Alignment explanation
Indices: 98193243--98193291 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
98193233 ATATATCTTA
**
98193243 ACTATATTATATATGTATTTTTAAC
1 ACTATATTATATACATATTTTTAAC
*
98193268 ACTATATTATGTACATATTTTTAA
1 ACTATATTATATACATATTTTTAA
98193292 TGTTATCACG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (25 bp):
ACTATATTATATACATATTTTTAAC
Found at i:98193470 original size:16 final size:16
Alignment explanation
Indices: 98193451--98193490 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
98193441 ATTATTCTAG
98193451 TATTTTGATATTTTA-A
1 TATTTT-ATATTTTATA
98193467 TATTTTATATTTTATA
1 TATTTTATATTTTATA
98193483 TATTTTAT
1 TATTTTAT
98193491 TATTCACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TATTTTATATTTTATA
Found at i:98193478 original size:7 final size:8
Alignment explanation
Indices: 98193451--98193494 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
98193441 ATTATTCTAG
*
98193451 TATTTTGA
1 TATTTTAA
98193459 TATTTTAA
1 TATTTTAA
98193467 TATTTT-A
1 TATTTTAA
98193474 TATTTTATA
1 TATTTTA-A
*
98193483 TATTTTAT
1 TATTTTAA
98193491 TATT
1 TATT
98193495 CACATCATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 7 0.22
8 17 0.53
9 8 0.25
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (8 bp):
TATTTTAA
Found at i:98196782 original size:30 final size:30
Alignment explanation
Indices: 98196748--98196810 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
98196738 GGCATTCTAC
98196748 TATATTTTTTTACATGTTATCTTATGTATA
1 TATATTTTTTTACATGTTATCTTATGTATA
98196778 TATATTTTTTTACATGTTATCTTATGTATA
1 TATATTTTTTTACATGTTATCTTATGTATA
98196808 TAT
1 TAT
98196811 CTTAACTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.60
Consensus pattern (30 bp):
TATATTTTTTTACATGTTATCTTATGTATA
Found at i:98196827 original size:22 final size:24
Alignment explanation
Indices: 98196799--98196857 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
98196789 ACATGTTATC
98196799 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
98196821 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
98196846 TTATGTACATAT
1 TTATGTATATAT
98196858 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:98196847 original size:25 final size:25
Alignment explanation
Indices: 98196815--98196863 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
98196805 ATATATCTTA
**
98196815 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
98196840 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
98196864 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:98196868 original size:20 final size:20
Alignment explanation
Indices: 98196843--98196898 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
98196833 TTTTAACACT
98196843 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
98196863 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
98196882 TTATATATGTACATATT
1 ATAT-TATGTACATATT
98196899 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:98197038 original size:16 final size:15
Alignment explanation
Indices: 98197014--98197061 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
98197004 TAATTATTAT
*
98197014 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
98197030 TATTTTAATATTTTA
1 TATTTTAATATTTTA
98197045 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
98197061 T
1 T
98197062 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:98197049 original size:7 final size:8
Alignment explanation
Indices: 98197014--98197065 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
98197004 TAATTATTAT
*
98197014 TATTCTAA
1 TATTTTAA
*
98197022 TATTTTGA
1 TATTTTAA
98197030 TATTTTAA
1 TATTTTAA
98197038 TATTTT-A
1 TATTTTAA
98197045 TATTTTATA
1 TATTTTA-A
*
98197054 TATTTTAT
1 TATTTTAA
98197062 TATT
1 TATT
98197066 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:98199837 original size:43 final size:42
Alignment explanation
Indices: 98199764--98199880 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 42
98199754 GTACAATGCC
* * *
98199764 AACATCCTAGAC-GTGGTCTTACATGTAATCAAATATCGATGCT
1 AACATCCTAGACAG-GGTCTTACACGAAATCAAATA-CGAAGCT
*
98199807 -ACTATTCTAGACAGGGTCTTACACGAAATCAAATACGAAGCT
1 AAC-ATCCTAGACAGGGTCTTACACGAAATCAAATACGAAGCT
* * *
98199849 AACGTCCCAGACATGGTCTTACACGTAAATCA
1 AACATCCTAGACAGGGTCTTACACG-AAATCA
98199881 TAAGTTGATG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
42 26 0.42
43 35 0.56
44 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (42 bp):
AACATCCTAGACAGGGTCTTACACGAAATCAAATACGAAGCT
Found at i:98199872 original size:42 final size:43
Alignment explanation
Indices: 98199815--98199918 Score: 131
Period size: 44 Copynumber: 2.4 Consensus size: 43
98199805 CTACTATTCT
* *
98199815 AGACAGGGTCTTACACGAAATCA-AA-TACGAAGCTAACGTCCC
1 AGACATGGTCTTACACGAAATCATAAGT-CGAAGCCAACGTCCC
* *
98199857 AGACATGGTCTTACACGTAAATCATAAGTTGATGCCAACGTCCC
1 AGACATGGTCTTACACG-AAATCATAAGTCGAAGCCAACGTCCC
*
98199901 AGACGTGGTCTTACACGA
1 AGACATGGTCTTACACGA
98199919 TAACACATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
42 16 0.30
43 7 0.13
44 30 0.56
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (43 bp):
AGACATGGTCTTACACGAAATCATAAGTCGAAGCCAACGTCCC
Done.