Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 316 of 318
Found at i:99796182 original size:45 final size:45
Alignment explanation
Indices: 99796118--99796210 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
99796108 ATCTCTTTCA
99796118 ACACTTTAAACTCGGTTGGTAGACTCACAGCCGCCACTTCTGGAG
1 ACACTTTAAACTCGGTTGGTAGACTCACAGCCGCCACTTCTGGAG
99796163 ACACTTTAAACTCGGTTGGTAGACTCACAGCCGCCACTTCTGGAG
1 ACACTTTAAACTCGGTTGGTAGACTCACAGCCGCCACTTCTGGAG
99796208 ACA
1 ACA
99796211 AAGGGTTGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (45 bp):
ACACTTTAAACTCGGTTGGTAGACTCACAGCCGCCACTTCTGGAG
Found at i:99796947 original size:20 final size:20
Alignment explanation
Indices: 99796919--99797031 Score: 81
Period size: 20 Copynumber: 5.5 Consensus size: 20
99796909 ATTACAAAAT
*
99796919 AATTTAAAATAATTTTTAAA
1 AATTCAAAATAATTTTTAAA
* *
99796939 AATTCAAAATGACTTTT-AA
1 AATTCAAAATAATTTTTAAA
* *
99796958 AATTCATAAT-ATTTATAAA
1 AATTCAAAATAATTTTTAAA
*
99796977 AATTTCAAAATTCATATTTTAAA
1 AA-TTCAAAA-TAAT-TTTTAAA
*
99797000 AATT-ATAAA-AAATTTTAAA
1 AATTCA-AAATAATTTTTAAA
99797019 AGATTCTAAAATA
1 A-ATTC-AAAATA
99797032 TATATAAAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.05
19 23 0.32
20 24 0.33
21 5 0.07
22 9 0.12
23 8 0.11
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
AATTCAAAATAATTTTTAAA
Found at i:99796978 original size:19 final size:18
Alignment explanation
Indices: 99796927--99796980 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
99796917 ATAATTTAAA
99796927 ATAAT-TTTTAAAAATTC
1 ATAATATTTTAAAAATTC
*
99796944 AAAATGACTTTT-AAAATTC
1 ATAAT-A-TTTTAAAAATTC
99796963 ATAATATTTATAAAAATT
1 ATAATATTT-TAAAAATT
99796981 TCAAAATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 7 0.23
18 2 0.07
19 17 0.57
20 4 0.13
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (18 bp):
ATAATATTTTAAAAATTC
Found at i:99797016 original size:19 final size:20
Alignment explanation
Indices: 99796992--99797029 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
99796982 CAAAATTCAT
99796992 ATTTTAAAA-ATTATAAAAA
1 ATTTTAAAAGATTATAAAAA
*
99797011 ATTTTAAAAGATTCTAAAA
1 ATTTTAAAAGATTATAAAA
99797030 TATATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
ATTTTAAAAGATTATAAAAA
Found at i:99809920 original size:26 final size:25
Alignment explanation
Indices: 99809854--99809921 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
99809844 TTTTAAAATA
*
99809854 AAAATTCAAAAA-AAAACAATTTTT
1 AAAATTCAAAAATAAAACAATTATT
99809878 AAAATAT-AAAAAGTAAATA-AATTATT
1 AAAAT-TCAAAAA-TAAA-ACAATTATT
99809904 AAAATTCAAAATATAAAA
1 AAAATTCAAAA-ATAAAA
99809922 TATAAATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
24 10 0.27
25 3 0.08
26 22 0.59
27 2 0.05
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (25 bp):
AAAATTCAAAAATAAAACAATTATT
Found at i:99809998 original size:23 final size:22
Alignment explanation
Indices: 99809955--99809998 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
99809945 AAAAATGTTT
* *
99809955 TTTTAATTTCTATTTATTTAAC
1 TTTTAATTTCTATCTAATTAAC
*
99809977 TTTTAATTTTTTATCTAATTAA
1 TTTTAA-TTTCTATCTAATTAA
99809999 ATATTTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTAATTTCTATCTAATTAAC
Found at i:99810704 original size:12 final size:12
Alignment explanation
Indices: 99810687--99810711 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99810677 GTTTTAAGTT
99810687 TTTTTTAATTAA
1 TTTTTTAATTAA
99810699 TTTTTTAATTAA
1 TTTTTTAATTAA
99810711 T
1 T
99810712 AAATATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTTAATTAA
Found at i:99810747 original size:23 final size:22
Alignment explanation
Indices: 99810707--99810751 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
99810697 AATTTTTTAA
*
99810707 TTAATAAATATATTTTTTTATTT
1 TTAATAAATATA-TCTTTTATTT
* *
99810730 TTAATTAATATCTCTTTTATTT
1 TTAATAAATATATCTTTTATTT
99810752 ATAAAATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (22 bp):
TTAATAAATATATCTTTTATTT
Found at i:99810926 original size:15 final size:15
Alignment explanation
Indices: 99810902--99810940 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
99810892 GGATTGAAAA
*
99810902 ATAAATATTATATAT
1 ATAAAAATTATATAT
*
99810917 ATAAAAATTATATTT
1 ATAAAAATTATATAT
99810932 ACTAAAAAT
1 A-TAAAAAT
99810941 AATGATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAAAAATTATATAT
Found at i:99813250 original size:19 final size:19
Alignment explanation
Indices: 99813223--99813266 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
99813213 AACTCGAAAT
*
99813223 TTAAATCGAATTATTCAAG
1 TTAAATCGAATAATTCAAG
* *
99813242 TTAATTCGAATAATTCAAT
1 TTAAATCGAATAATTCAAG
99813261 TTAAAT
1 TTAAAT
99813267 TTTAAAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (19 bp):
TTAAATCGAATAATTCAAG
Found at i:99826023 original size:17 final size:17
Alignment explanation
Indices: 99825996--99826040 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
99825986 TTTTATATAT
99825996 TTTTAAT-AATTTTAAA
1 TTTTAATAAATTTTAAA
**
99826012 TTTTAATAAATTTTTCA
1 TTTTAATAAATTTTAAA
99826029 TTTT-ATAAATTT
1 TTTTAATAAATTT
99826041 ATTTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAATAAATTTTAAA
Found at i:99833542 original size:13 final size:13
Alignment explanation
Indices: 99833524--99833590 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
99833514 AACACTTAAT
*
99833524 TTTTTCAAAAGTA
1 TTTTTCAAAAATA
99833537 TTTTTCAAAAATA
1 TTTTTCAAAAATA
* * *
99833550 TTTTTCTACAACA
1 TTTTTCAAAAATA
* *
99833563 CTTCTCAAAAATA
1 TTTTTCAAAAATA
*
99833576 TTTTTTAAAAATA
1 TTTTTCAAAAATA
99833589 TT
1 TT
99833591 ACAAAACTAG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.01, T:0.46
Consensus pattern (13 bp):
TTTTTCAAAAATA
Found at i:99834325 original size:28 final size:28
Alignment explanation
Indices: 99834273--99834331 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
99834263 TACTGAAATT
99834273 TTAAAAATTATAAAATAAAAATAATTATA
1 TTAAAAA-TATAAAATAAAAATAATTATA
*
99834302 TTAAAAA-ATAATATAAAATATAATTATA
1 TTAAAAATATAAAATAAAA-ATAATTATA
99834330 TT
1 TT
99834332 TGTAAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 10 0.36
28 11 0.39
29 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
TTAAAAATATAAAATAAAAATAATTATA
Found at i:99834348 original size:28 final size:26
Alignment explanation
Indices: 99834287--99834350 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
99834277 AAATTATAAA
*
99834287 ATAAAAATAATTATATTAAAAAATAAT
1 ATAAATATAATTATATTAAAAAAT-AT
99834314 ATAAAATATAATTATATTTGTAAAAAAT-T
1 AT-AAATATAATTATA--T-TAAAAAATAT
99834343 ATAAATAT
1 ATAAATAT
99834351 TTTAAAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 2 0.06
28 18 0.56
29 3 0.09
30 1 0.03
31 8 0.25
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
ATAAATATAATTATATTAAAAAATAT
Found at i:99834770 original size:24 final size:24
Alignment explanation
Indices: 99834714--99834780 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
99834704 AAAATCAAAT
* *
99834714 TTCAAGTTAA-TTGAATTGAGTTA
1 TTCAAGTCAACTTGAATTGAGTAA
99834737 TTCAAGTCAACTTGAA-TGAGTAA
1 TTCAAGTCAACTTGAATTGAGTAA
* * *
99834760 TTCGAGTTCAAGTTGAGTTGA
1 TTCAAG-TCAACTTGAATTGA
99834781 ATTTTGCAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 20 0.56
24 13 0.36
25 3 0.08
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (24 bp):
TTCAAGTCAACTTGAATTGAGTAA
Found at i:99836451 original size:14 final size:14
Alignment explanation
Indices: 99836432--99836458 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99836422 ATTTATAAAA
99836432 ATTCTAAAAAAATT
1 ATTCTAAAAAAATT
99836446 ATTCTAAAAAAAT
1 ATTCTAAAAAAAT
99836459 ATAAAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTCTAAAAAAATT
Found at i:99844569 original size:24 final size:23
Alignment explanation
Indices: 99844525--99844569 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
99844515 TATAAGGAAC
*
99844525 TTAAAAAAATTATTTATTTAAAA
1 TTAAAAAAATTATTTAATTAAAA
99844548 TTAAAAAATATTCA-TTAATTAA
1 TTAAAAAA-ATT-ATTTAATTAA
99844570 TTTCCATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 10 0.53
25 1 0.05
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
TTAAAAAAATTATTTAATTAAAA
Found at i:99845147 original size:21 final size:21
Alignment explanation
Indices: 99845121--99845171 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
99845111 AGCGGTGGCG
*
99845121 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
* *
99845142 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTGTAGCA
99845163 GTGAGATTA
1 GTGAGATTA
99845172 AAAACAATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.33, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:99849078 original size:34 final size:34
Alignment explanation
Indices: 99849030--99849097 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
99849020 GTATACATAA
*
99849030 TGTCTGTATTACAAATCAACAAGGAGAAATTAAC
1 TGTCAGTATTACAAATCAACAAGGAGAAATTAAC
*
99849064 TGTCAGTATTACAAATCAACAAGGTGAAATTAAC
1 TGTCAGTATTACAAATCAACAAGGAGAAATTAAC
99849098 GAAAAACAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (34 bp):
TGTCAGTATTACAAATCAACAAGGAGAAATTAAC
Found at i:99853756 original size:14 final size:15
Alignment explanation
Indices: 99853737--99853766 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
99853727 ACAGATAATC
99853737 TTTTAAAATC-ATTT
1 TTTTAAAATCAATTT
99853751 TTTTAAAATCAATTT
1 TTTTAAAATCAATTT
99853766 T
1 T
99853767 GAACGATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTAAAATCAATTT
Found at i:99855194 original size:15 final size:15
Alignment explanation
Indices: 99855174--99855202 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99855164 AAAATTTTAT
99855174 AAAATTATAAAAATA
1 AAAATTATAAAAATA
99855189 AAAATTATAAAAAT
1 AAAATTATAAAAAT
99855203 TTTCCGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATTATAAAAATA
Found at i:99859487 original size:68 final size:67
Alignment explanation
Indices: 99859415--99859564 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
99859405 CTTCATGTGT
* * * *
99859415 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
99859477 ATGTAG
62 ATGTAG
** * *
99859483 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
99859548 AG
66 AG
99859550 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
99859565 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:99859520 original size:64 final size:64
Alignment explanation
Indices: 99859439--99859622 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
99859429 AGACATTATG
* *
99859439 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
99859503 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
99859568 AA
63 AA
* * * *
99859570 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
99859623 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:99863220 original size:90 final size:90
Alignment explanation
Indices: 99863119--99863283 Score: 206
Period size: 90 Copynumber: 1.8 Consensus size: 90
99863109 TTGAACTTGA
* * * * *
99863119 CAACTTTTCCCACATTAGGGTCTT-AACTTTGTTTGGTCCAAGTTAGATTCTAAAATTGGCAATT
1 CAACTATTCCCACACT-GGGGCTTGAACTTTGTTTCGTCCAAGTTACATTCTAAAATTGGCAATT
*
99863183 ATTCTCACATTAGGACTTGGACTAGG
65 ATTCACACATTAGGACTTGGACTAGG
* * * * * *
99863209 CAACTATTCCCACACTGGGGCTTGAATTTTTTTTCGTCCAAGTTACTTTTTAAACTTGGCAATTG
1 CAACTATTCCCACACTGGGGCTTGAACTTTGTTTCGTCCAAGTTACATTCTAAAATTGGCAATTA
99863274 TTCACACATT
66 TTCACACATT
99863284 GGGGCCAAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
89 6 0.10
90 56 0.90
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (90 bp):
CAACTATTCCCACACTGGGGCTTGAACTTTGTTTCGTCCAAGTTACATTCTAAAATTGGCAATTA
TTCACACATTAGGACTTGGACTAGG
Found at i:99868289 original size:27 final size:27
Alignment explanation
Indices: 99868248--99868323 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
99868238 GTTTTTGGTG
*
99868248 ATATT-TTTAATTAATTATTTAGTTAA
1 ATATTATTTTATTAATTATTTAGTTAA
* *
99868274 ATATTATTTTATTAA-TATTTTACTTAG
1 ATATTATTTTATTAATTA-TTTAGTTAA
99868301 ATATTTATTATTATT--TTATTTAG
1 ATA-TTATT-TTATTAATTATTTAG
99868324 AAAATGCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
26 7 0.17
27 22 0.54
28 7 0.17
29 5 0.12
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (27 bp):
ATATTATTTTATTAATTATTTAGTTAA
Found at i:99868306 original size:13 final size:11
Alignment explanation
Indices: 99868278--99868320 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
99868268 AGTTAAATAT
99868278 TATTTTATTAA
1 TATTTTATTAA
99868289 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
99868302 TA-TTTATTAT
1 TATTTTATTAA
99868312 TATTTTATT
1 TATTTTATT
99868321 TAGAAAATGC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:99868307 original size:23 final size:23
Alignment explanation
Indices: 99868281--99868324 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
99868271 TAAATATTAT
99868281 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
99868304 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
99868325 AAATGCTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:99875260 original size:9 final size:9
Alignment explanation
Indices: 99875246--99875271 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
99875236 ACATTTTCGT
99875246 CTTTTGGGA
1 CTTTTGGGA
99875255 CTTTTGGGA
1 CTTTTGGGA
99875264 CTTTTGGG
1 CTTTTGGG
99875272 TTGAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.08, C:0.12, G:0.35, T:0.46
Consensus pattern (9 bp):
CTTTTGGGA
Found at i:99877813 original size:17 final size:18
Alignment explanation
Indices: 99877793--99877834 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
99877783 GAAATTAAAT
*
99877793 AATATATAAAATT-TTAA
1 AATATATAAAATTGATAA
99877810 AATATAT-AAATTGATAA
1 AATATATAAAATTGATAA
99877827 AATATATA
1 AATATATA
99877835 TAAAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATATATAAAATTGATAA
Found at i:99877951 original size:8 final size:8
Alignment explanation
Indices: 99877938--99878006 Score: 51
Period size: 8 Copynumber: 9.1 Consensus size: 8
99877928 TTTTAGTTCT
99877938 TTTATATA
1 TTTATATA
99877946 TTTATATA
1 TTTATATA
99877954 --TATATA
1 TTTATATA
*
99877960 TTTATAAAA
1 TTTAT-ATA
99877969 TTT-TA-A
1 TTTATATA
99877975 -TTATATA
1 TTTATATA
99877982 -TTATATA
1 TTTATATA
* *
99877989 TTTTAAATC
1 -TTTATATA
99877998 TTTATATA
1 TTTATATA
99878006 T
1 T
99878007 CTTGCAAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
5 2 0.04
6 9 0.18
7 9 0.18
8 19 0.39
9 10 0.20
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (8 bp):
TTTATATA
Found at i:99879192 original size:24 final size:24
Alignment explanation
Indices: 99879165--99879212 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
99879155 TATTCTTTTA
* *
99879165 AAATTTTATAATTTTTTTAAATAT
1 AAATTTTAGAATTTTTATAAATAT
*
99879189 AAATTTTGGAATTTTTATAAATAT
1 AAATTTTAGAATTTTTATAAATAT
99879213 TTTGAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (24 bp):
AAATTTTAGAATTTTTATAAATAT
Found at i:99879216 original size:20 final size:22
Alignment explanation
Indices: 99879191--99879237 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
99879181 TTAAATATAA
99879191 ATTTTGGAAT-TTTT-ATAAA-T
1 ATTTTGGAATATTTTGA-AAATT
99879211 ATTTT-GAATATTTTGAAAATT
1 ATTTTGGAATATTTTGAAAATT
99879232 ATTTTG
1 ATTTTG
99879238 ATTATGTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
19 4 0.17
20 12 0.52
21 7 0.30
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (22 bp):
ATTTTGGAATATTTTGAAAATT
Found at i:99879223 original size:21 final size:20
Alignment explanation
Indices: 99879191--99879238 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
99879181 TTAAATATAA
* *
99879191 ATTTTGGAATTTTTATAAA-T
1 ATTTTGAAATTTTGA-AAATT
99879211 ATTTTGAATATTTTGAAAATT
1 ATTTTGAA-ATTTTGAAAATT
99879232 ATTTTGA
1 ATTTTGA
99879239 TTATGTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.54
Consensus pattern (20 bp):
ATTTTGAAATTTTGAAAATT
Found at i:99881390 original size:10 final size:9
Alignment explanation
Indices: 99881354--99881408 Score: 55
Period size: 10 Copynumber: 6.3 Consensus size: 9
99881344 AATATTTAAG
99881354 TATTA-ATA
1 TATTATATA
99881362 TA-TA-ATA
1 TATTATATA
99881369 TATTATAT-
1 TATTATATA
99881377 TATTATATTA
1 TATTATA-TA
99881387 TATTATATA
1 TATTATATA
*
99881396 TAATATAATA
1 TATTAT-ATA
99881406 TAT
1 TAT
99881409 AAACATAAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 7 0.17
8 11 0.28
9 10 0.25
10 12 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TATTATATA
Found at i:99881409 original size:39 final size:38
Alignment explanation
Indices: 99881308--99881409 Score: 95
Period size: 39 Copynumber: 2.6 Consensus size: 38
99881298 TAAGATATTT
*
99881308 TTTATATAAAATATATATTATATATTATATTAACTTAATA
1 TTTATATATAATATA-A-TATATATTATATTAACTTAATA
99881348 TTTA-AGTATTAATAT-ATAATATATTATATT-A-TTATATTA
1 TTTATA-TA-TAATATAAT-ATATATTATATTAACTTA-A-TA
99881387 TATTATATATAATATAATATATA
1 T-TTATATATAATATAATATATA
99881410 AACATAAGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 17
0.75 0.01 0.24
Matches are distributed among these distances:
37 3 0.06
38 3 0.06
39 28 0.53
40 13 0.25
41 6 0.11
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (38 bp):
TTTATATATAATATAATATATATTATATTAACTTAATA
Found at i:99881410 original size:7 final size:7
Alignment explanation
Indices: 99881311--99881410 Score: 55
Period size: 7 Copynumber: 14.1 Consensus size: 7
99881301 GATATTTTTT
*
99881311 ATATAAA
1 ATATATA
99881318 ATATATA
1 ATATATA
*
99881325 TTATATA
1 ATATATA
*
99881332 TTATATTA
1 ATATA-TA
*
99881340 A-CT-TA
1 ATATATA
*
99881345 ATATTTA
1 ATATATA
99881352 AGTAT-TA
1 A-TATATA
99881359 ATATATA
1 ATATATA
*
99881366 ATATATT
1 ATATATA
99881373 ATAT-TA
1 ATATATA
* *
99881379 TTATATT
1 ATATATA
99881386 ATATTATA
1 ATA-TATA
99881394 TATAATATA
1 -AT-ATATA
99881403 ATATATA
1 ATATATA
99881410 A
1 A
99881411 ACATAAGAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
5 3 0.04
6 8 0.11
7 45 0.62
8 10 0.14
9 6 0.08
10 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
ATATATA
Found at i:99882618 original size:22 final size:22
Alignment explanation
Indices: 99882589--99882645 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
99882579 TAGCACGTTA
99882589 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTTTAGCAC-TCT
* *
99882612 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACTCT
99882633 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
99882646 CGTTTGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.42
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACTCT
Found at i:99886004 original size:20 final size:21
Alignment explanation
Indices: 99885966--99886004 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
99885956 AATTTTTAAC
* *
99885966 ATTTTTTATATACTCTTTAGA
1 ATTTTTTATATAATATTTAGA
99885987 ATTTTTT-TATAATATTTA
1 ATTTTTTATATAATATTTA
99886005 TATTCGGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTTTTATATAATATTTAGA
Found at i:99891154 original size:25 final size:24
Alignment explanation
Indices: 99891126--99891182 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
99891116 AAATAAGAAT
99891126 AAAAATTGTAATACAAAATTAATTA
1 AAAAATTGTAATACAAAATTAA-TA
* **
99891151 AAAAACCT-TAATACAATTTTAATA
1 AAAAA-TTGTAATACAAAATTAATA
99891175 AAAAATTG
1 AAAAATTG
99891183 AGAATGAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
23 1 0.04
24 7 0.27
25 17 0.65
26 1 0.04
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAAATTGTAATACAAAATTAATA
Found at i:99891203 original size:20 final size:20
Alignment explanation
Indices: 99891178--99891256 Score: 79
Period size: 20 Copynumber: 3.9 Consensus size: 20
99891168 TTTAATAAAA
*
99891178 AATTGAGAATGAACTGAGAG
1 AATTGAGAATGAATTGAGAG
* *
99891198 AATTGAGTGA-GAATTAAGAG
1 AATTGAG-AATGAATTGAGAG
99891218 AAGATTGAGAATGAATTGAGAG
1 -A-ATTGAGAATGAATTGAGAG
* *
99891240 AGTTGAGAGTGAATTGA
1 AATTGAGAATGAATTGA
99891257 AAAAGTGGGA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
20 29 0.60
21 4 0.08
22 15 0.31
ACGTcount: A:0.43, C:0.01, G:0.32, T:0.24
Consensus pattern (20 bp):
AATTGAGAATGAATTGAGAG
Found at i:99896813 original size:15 final size:15
Alignment explanation
Indices: 99896793--99896821 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99896783 GTGAAATAAA
99896793 CTGAAATAATAAAAG
1 CTGAAATAATAAAAG
99896808 CTGAAATAATAAAA
1 CTGAAATAATAAAA
99896822 TATTGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (15 bp):
CTGAAATAATAAAAG
Found at i:99897688 original size:25 final size:24
Alignment explanation
Indices: 99897636--99897688 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
99897626 TTTTTTAAAA
*
99897636 TTAAAAAAAAATTTCTATATTTTC
1 TTAAAAAAAAATTTCTATATATTC
99897660 TTAAAAAATAAAGTTT-TATATCATT-
1 TTAAAAAA-AAA-TTTCTATAT-ATTC
99897685 TTAA
1 TTAA
99897689 TAATTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 8 0.32
25 12 0.48
26 5 0.20
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (24 bp):
TTAAAAAAAAATTTCTATATATTC
Found at i:99898314 original size:22 final size:18
Alignment explanation
Indices: 99898270--99898311 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
99898260 AATTTTAGGT
99898270 CAATTATACATACACCAA
1 CAATTATACATACACCAA
99898288 CAATTATACATACACCAA
1 CAATTATACATACACCAA
99898306 CAATTA
1 CAATTA
99898312 ATTTTAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (18 bp):
CAATTATACATACACCAA
Found at i:99898338 original size:51 final size:51
Alignment explanation
Indices: 99898244--99898344 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
99898234 CTTGAAGTAC
* * * * *
99898244 ACATATACCAACAATTAATTTTAGGTCAATTATACATACACCAACAATTAT
1 ACATACACCAACAATTAATTTTAGGTCAAATAAAAATAAACCAACAATTAT
*
99898295 ACATACACCAACAATTAATTTTAGGGT-AAATAAAAATAAACCAAGAATTA
1 ACATACACCAACAATTAATTTTA-GGTCAAATAAAAATAAACCAACAATTA
99898345 ATTTTAGGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 40 0.93
52 3 0.07
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (51 bp):
ACATACACCAACAATTAATTTTAGGTCAAATAAAAATAAACCAACAATTAT
Found at i:99898390 original size:33 final size:33
Alignment explanation
Indices: 99898288--99898397 Score: 159
Period size: 33 Copynumber: 3.3 Consensus size: 33
99898278 CATACACCAA
99898288 CAATTATACATACACCAACAATTAATTTTAGGGT
1 CAATTATACATACACCAACAATTAATTTTA-GGT
* * * * *
99898322 -AAATAAAAATAAACCAAGAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
99898354 CAATTATACATACACCAACAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
99898387 CAATTATACAT
1 CAATTATACAT
99898398 GCTTTATAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
32 3 0.05
33 62 0.95
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
CAATTATACATACACCAACAATTAATTTTAGGT
Found at i:99901624 original size:120 final size:120
Alignment explanation
Indices: 99901427--99902288 Score: 1618
Period size: 120 Copynumber: 7.2 Consensus size: 120
99901417 TTTTCAAGTT
99901427 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
99901492 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
99901547 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
99901612 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
99901667 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
**
99901732 TAATATAAGAATATTAAGAATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
99901787 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATAATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
99901852 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
99901907 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
99901972 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
99902027 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
99902092 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
* *
99902147 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGGTTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
99902212 TAATATAAGAATATTAATTATTAAGAA-TTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
99902266 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
99902289 TAAATATGAT
Statistics
Matches: 731, Mismatches: 11, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
119 50 0.07
120 681 0.93
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:99901805 original size:51 final size:51
Alignment explanation
Indices: 99901750--99901925 Score: 129
Period size: 51 Copynumber: 3.1 Consensus size: 51
99901740 GAATATTAAG
99901750 AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
1 AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
* * *
99901801 AATTATGTTAATTTATATTTTACAGTATCATATA-TTATAATTTGAGTAAATTAATATAAGAATA
1 AATTAAG--AATTT-TA--TTA-A--ATTATATAGTT-TAA-TT-A--AAA-T-ATAT----TTA
*
99901865 TTAAT
47 ATAAT
*
99901870 TATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
1 AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
99901921 AATTA
1 AATTA
99901926 TGTTAATTTA
Statistics
Matches: 95, Mismatches: 10, Indels: 40
0.66 0.07 0.28
Matches are distributed among these distances:
51 16 0.17
53 5 0.05
54 2 0.02
55 4 0.04
56 4 0.04
57 4 0.04
58 2 0.02
59 11 0.12
60 4 0.04
61 11 0.12
62 2 0.02
63 4 0.04
64 4 0.04
65 4 0.04
66 2 0.02
67 5 0.05
69 11 0.12
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47
Consensus pattern (51 bp):
AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
Found at i:99902146 original size:18 final size:17
Alignment explanation
Indices: 99902118--99902152 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99902108 ATTATTAAGA
*
99902118 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
99902135 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
99902153 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:99902501 original size:44 final size:45
Alignment explanation
Indices: 99902436--99902526 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
99902426 ACCTCTACTC
* * *
99902436 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
99902480 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
99902525 CA
1 CA
99902527 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:99902528 original size:16 final size:16
Alignment explanation
Indices: 99902507--99902575 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
99902497 GATTAGCTAT
99902507 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
99902523 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
99902540 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
99902556 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
99902572 TACA
1 TACA
99902576 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:99902549 original size:33 final size:32
Alignment explanation
Indices: 99902507--99902575 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
99902497 GATTAGCTAT
99902507 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
99902540 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
99902572 TACA
1 TACA
99902576 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:99915664 original size:15 final size:15
Alignment explanation
Indices: 99915644--99915672 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99915634 TTTCACAATA
99915644 TTTTATTATTTCAGC
1 TTTTATTATTTCAGC
99915659 TTTTATTATTTCAG
1 TTTTATTATTTCAG
99915673 TTTATTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTATTATTTCAGC
Found at i:99915743 original size:110 final size:110
Alignment explanation
Indices: 99915550--99915807 Score: 516
Period size: 110 Copynumber: 2.3 Consensus size: 110
99915540 TTTATTAATA
99915550 TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAGTATTAGATATATTATACATTAATATTT
1 TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAGTATTAGATATATTATACATTAATATTT
99915615 ATTTTATTATTTCAGTTCATTTCACAATATTTTATTATTTCAGCT
66 ATTTTATTATTTCAGTTCATTTCACAATATTTTATTATTTCAGCT
99915660 TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAGTATTAGATATATTATACATTAATATTT
1 TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAGTATTAGATATATTATACATTAATATTT
99915725 ATTTTATTATTTCAGTTCATTTCACAATATTTTATTATTTCAGCT
66 ATTTTATTATTTCAGTTCATTTCACAATATTTTATTATTTCAGCT
99915770 TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAG
1 TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAG
99915808 CATATTTTGC
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 148 1.00
ACGTcount: A:0.31, C:0.09, G:0.05, T:0.56
Consensus pattern (110 bp):
TTTATTATTTCAGTTTATTTCACAATATTTATTTTAAGTATTAGATATATTATACATTAATATTT
ATTTTATTATTTCAGTTCATTTCACAATATTTTATTATTTCAGCT
Found at i:99915774 original size:15 final size:15
Alignment explanation
Indices: 99915754--99915782 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99915744 TTTCACAATA
99915754 TTTTATTATTTCAGC
1 TTTTATTATTTCAGC
99915769 TTTTATTATTTCAG
1 TTTTATTATTTCAG
99915783 TTTATTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTATTATTTCAGC
Found at i:99921148 original size:20 final size:20
Alignment explanation
Indices: 99921071--99921149 Score: 79
Period size: 20 Copynumber: 3.9 Consensus size: 20
99921061 TCCCACTTTT
* *
99921071 TCAATTCACTCTCAACTCTC
1 TCAATTCATTCTCAATTCTC
99921091 TCAATTCATTCTCAATCTTCTC
1 TCAATTCATTCTCAA--TTCTC
* *
99921113 TTAATTC-TCACTCAATTCTC
1 TCAATTCAT-TCTCAATTCTC
*
99921133 TCAGTTCATTCTCAATT
1 TCAATTCATTCTCAATT
99921150 TTTTATTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
20 31 0.65
21 2 0.04
22 15 0.31
ACGTcount: A:0.24, C:0.32, G:0.01, T:0.43
Consensus pattern (20 bp):
TCAATTCATTCTCAATTCTC
Found at i:99926281 original size:18 final size:18
Alignment explanation
Indices: 99926247--99926284 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
99926237 AATTTCAAAA
*
99926247 TTTTAAAAATAATAATAT
1 TTTTAAAAATAAAAATAT
99926265 TTTTAAAACA-AAAAATAT
1 TTTTAAAA-ATAAAAATAT
99926283 TT
1 TT
99926285 ATAACAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTTAAAAATAAAAATAT
Found at i:99929707 original size:22 final size:22
Alignment explanation
Indices: 99929678--99929745 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
99929668 TGCACAAACG
99929678 AACAGAGAGCACTAAAGTGCTA
1 AACAGAGAGCACTAAAGTGCTA
* *
99929700 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTA-AAGTGCTA
*
99929722 AACAGAGAGCACTTAACGTGCTA
1 AACAGAGAGCAC-TAAAGTGCTA
99929745 A
1 A
99929746 TAATAGTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 29 0.74
23 8 0.21
24 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTAAAGTGCTA
Found at i:99930906 original size:22 final size:22
Alignment explanation
Indices: 99930864--99930906 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
99930854 TTTGTCCCTG
* **
99930864 CTATTCTGTTTGTTTGTTTTTT
1 CTATTCTGTTTCTTTACTTTTT
99930886 CTATTCTGTTTCTTTACTTTT
1 CTATTCTGTTTCTTTACTTTT
99930907 CTTATGTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.14, G:0.09, T:0.70
Consensus pattern (22 bp):
CTATTCTGTTTCTTTACTTTTT
Found at i:99930925 original size:7 final size:7
Alignment explanation
Indices: 99930915--99931008 Score: 52
Period size: 7 Copynumber: 13.3 Consensus size: 7
99930905 TTCTTATGTT
99930915 TTATATA
1 TTATATA
99930922 TTATAT-
1 TTATATA
99930928 TATATATA
1 T-TATATA
*
99930936 ATATAATA
1 TTAT-ATA
*
99930944 TAATAATA
1 TTAT-ATA
*
99930952 TAATATA
1 TTATATA
99930959 TTATATA
1 TTATATA
99930966 TTA-ATA
1 TTATATA
*
99930972 CTTAAATA
1 -TTATATA
99930980 TTA-AGT-
1 TTATA-TA
*
99930986 TAATATA
1 TTATATA
*
99930993 ATATATA
1 TTATATA
*
99931000 ATATATA
1 TTATATA
99931007 TT
1 TT
99931009 TTTATATAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
6 8 0.11
7 47 0.66
8 16 0.23
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (7 bp):
TTATATA
Found at i:99930990 original size:39 final size:33
Alignment explanation
Indices: 99930917--99931005 Score: 99
Period size: 39 Copynumber: 2.5 Consensus size: 33
99930907 CTTATGTTTT
*
99930917 ATATATTATATTATATA-TAATATAATATAATA
1 ATATAATATATTATATATTAATATAATATAATA
99930949 ATATAATATATTATATATTAATACTTAAATATTAAGTTA
1 ATATAATATATTATATATTAATA--T-AATA-TAA--TA
*
99930988 ATATAATATATAATATAT
1 ATATAATATATTATATAT
99931006 ATTTTTATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
32 16 0.33
33 5 0.10
35 1 0.02
36 4 0.08
37 3 0.06
39 19 0.40
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (33 bp):
ATATAATATATTATATATTAATATAATATAATA
Found at i:99934401 original size:8 final size:8
Alignment explanation
Indices: 99934334--99934402 Score: 51
Period size: 8 Copynumber: 9.1 Consensus size: 8
99934324 TTTTTGCAAG
99934334 ATATATAA
1 ATATATAA
* *
99934342 AGATTTAA
1 ATATATAA
99934350 A-ATATATA
1 ATATATA-A
99934358 ATATAT-A
1 ATATATAA
99934365 AT-TA-AA
1 ATATATAA
*
99934371 ATTTTATAA
1 A-TATATAA
99934380 ATATAT--
1 ATATATAA
99934386 ATATATAA
1 ATATATAA
99934394 ATATATAA
1 ATATATAA
99934402 A
1 A
99934403 AGAACTAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
6 10 0.20
7 8 0.16
8 24 0.49
9 7 0.14
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (8 bp):
ATATATAA
Found at i:99934557 original size:17 final size:17
Alignment explanation
Indices: 99934507--99934548 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
99934497 AAAACTTTTA
*
99934507 TATATATTTTATCAA-TT
1 TATATATTTTA-AAATTT
99934524 TATATATTTTAAAATTT
1 TATATATTTTAAAATTT
99934541 TATATATT
1 TATATATT
99934549 ATTTAATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
TATATATTTTAAAATTT
Found at i:99938149 original size:46 final size:46
Alignment explanation
Indices: 99938056--99938152 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 46
99938046 TGAGATTCTT
* *
99938056 ATTC-TTTGAGCTTCAACGTGCCACAGGGAATACTTTAGATGTAAG
1 ATTCTTTTGAGCTTCAACGTGCCACAGGGAATACTTCAGAAGTAAG
* * * *
99938101 ATTCTTTTGAGCTTCAACGTGCCATAGTGAGTACTTCA-AAGCTCAG
1 ATTCTTTTGAGCTTCAACGTGCCACAGGGAATACTTCAGAAG-TAAG
99938147 ATTCTT
1 ATTCTT
99938153 ATTCTTTTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
45 6 0.14
46 38 0.86
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (46 bp):
ATTCTTTTGAGCTTCAACGTGCCACAGGGAATACTTCAGAAGTAAG
Found at i:99944017 original size:22 final size:22
Alignment explanation
Indices: 99943986--99944027 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
99943976 ATAGCATTTT
99943986 TCTAAATAAAATAATAATAATA
1 TCTAAATAAAATAATAATAATA
* *
99944008 TCTAAGTAAAATATTAATAA
1 TCTAAATAAAATAATAATAA
99944028 AATAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (22 bp):
TCTAAATAAAATAATAATAATA
Found at i:99944031 original size:27 final size:27
Alignment explanation
Indices: 99943987--99944062 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
99943977 TAGCATTTTT
99943987 CTAAATAA--AATAATAATAATATCTAA
1 CTAAATAATTAATAA-AATAATATCTAA
* *
99944013 GTAAA-ATATTAATAAAATAATATTTAA
1 CTAAATA-ATTAATAAAATAATATCTAA
*
99944040 CTAAATAATTAATTAAA-AATATC
1 CTAAATAATTAATAAAATAATATC
99944063 ACCCAAAAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
25 1 0.02
26 10 0.24
27 24 0.59
28 6 0.15
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.34
Consensus pattern (27 bp):
CTAAATAATTAATAAAATAATATCTAA
Found at i:99946390 original size:1 final size:1
Alignment explanation
Indices: 99946386--99946435 Score: 100
Period size: 1 Copynumber: 50.0 Consensus size: 1
99946376 TTTTTTTTAC
99946386 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
99946436 AGGTTAAGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:99959547 original size:120 final size:120
Alignment explanation
Indices: 99959350--99960212 Score: 1627
Period size: 120 Copynumber: 7.2 Consensus size: 120
99959340 TTTTCAAGTT
99959350 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
99959415 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
99959470 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
99959535 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
99959590 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
**
99959655 TAATATAAGAATATTAAGAATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
99959710 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATAATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
99959775 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
99959830 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
99959895 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
99959950 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
99960015 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
* *
99960070 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGGTTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
99960135 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
99960190 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
99960213 TAAATATGAT
Statistics
Matches: 732, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 732 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:99959728 original size:51 final size:51
Alignment explanation
Indices: 99959673--99959848 Score: 129
Period size: 51 Copynumber: 3.1 Consensus size: 51
99959663 GAATATTAAG
99959673 AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
1 AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
* * *
99959724 AATTATGTTAATTTATATTTTACAGTATCATATA-TTATAATTTGAGTAAATTAATATAAGAATA
1 AATTAAG--AATTT-TA--TTA-A--ATTATATAGTT-TAA-TT-A--AAA-T-ATAT----TTA
*
99959788 TTAAT
47 ATAAT
*
99959793 TATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
1 AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
99959844 AATTA
1 AATTA
99959849 TGTTAATTTA
Statistics
Matches: 95, Mismatches: 10, Indels: 40
0.66 0.07 0.28
Matches are distributed among these distances:
51 16 0.17
53 5 0.05
54 2 0.02
55 4 0.04
56 4 0.04
57 4 0.04
58 2 0.02
59 11 0.12
60 4 0.04
61 11 0.12
62 2 0.02
63 4 0.04
64 4 0.04
65 4 0.04
66 2 0.02
67 5 0.05
69 11 0.12
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47
Consensus pattern (51 bp):
AATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAAT
Found at i:99960069 original size:18 final size:17
Alignment explanation
Indices: 99960041--99960075 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99960031 ATTATTAAGA
*
99960041 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
99960058 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
99960076 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:99960189 original size:18 final size:17
Alignment explanation
Indices: 99960161--99960195 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99960151 ATTATTAAGA
*
99960161 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
99960178 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
99960196 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:99960425 original size:44 final size:45
Alignment explanation
Indices: 99960360--99960450 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
99960350 ACCTCTACTC
* * *
99960360 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
99960404 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
99960449 CA
1 CA
99960451 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:99960452 original size:16 final size:16
Alignment explanation
Indices: 99960431--99960499 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
99960421 GATTAGCTAT
99960431 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
99960447 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
99960464 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
99960480 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
99960496 TACA
1 TACA
99960500 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:99960473 original size:33 final size:32
Alignment explanation
Indices: 99960431--99960499 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
99960421 GATTAGCTAT
99960431 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
99960464 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
99960496 TACA
1 TACA
99960500 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:99964714 original size:59 final size:59
Alignment explanation
Indices: 99964649--99964836 Score: 150
Period size: 59 Copynumber: 3.2 Consensus size: 59
99964639 ATTTTATTAA
99964649 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
* * ** * * * ** * * * *
99964708 ATCATATATTATGATTTTAGTA-AATTCATA-TAAGAATATTGATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA-AATTA-TATTTTA-TAGT
* * * *
99964768 ATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTTTACAGT
1 ATCATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTTTATAGT
99964827 ATCATATATT
1 ATCATATATT
99964837 ATGATTTGAG
Statistics
Matches: 91, Mismatches: 30, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
57 5 0.05
58 10 0.11
59 36 0.40
60 25 0.27
61 10 0.11
62 4 0.04
63 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (59 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
Found at i:99964763 original size:119 final size:120
Alignment explanation
Indices: 99964638--99964926 Score: 492
Period size: 119 Copynumber: 2.4 Consensus size: 120
99964628 AATTATTTTA
*
99964638 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
* * *
99964703 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
99964757 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTT
99964821 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
99964877 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
99964927 GTTTAAATAT
Statistics
Matches: 160, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
119 109 0.68
120 51 0.32
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:99964784 original size:18 final size:18
Alignment explanation
Indices: 99964758--99964813 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 18
99964748 GATTATTAGA
99964758 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
99964775 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
99964791 A-TTTAA-T-AATTAT-T
1 ATTTTAATTAAATTATAT
99964805 ATTTTAATT
1 ATTTTAATT
99964814 TATATTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.06
14 3 0.09
15 12 0.35
16 6 0.18
17 5 0.15
18 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:99964894 original size:59 final size:58
Alignment explanation
Indices: 99964712--99964894 Score: 146
Period size: 56 Copynumber: 3.1 Consensus size: 58
99964702 TATAGTATCA
*
99964712 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * *
99964770 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATTATTATT-TTAATTTATATTTTA-CAGTAT
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAA-TATTATTATTAA--GA-ATTTTATTA-AAT
*
99964829 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
99964890 TATAT
1 TATAT
99964895 ATTTTAATTA
Statistics
Matches: 94, Mismatches: 14, Indels: 33
0.67 0.10 0.23
Matches are distributed among these distances:
55 7 0.07
56 15 0.16
57 8 0.09
58 6 0.06
59 13 0.14
61 12 0.13
62 10 0.11
63 14 0.15
64 9 0.10
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:99964906 original size:18 final size:17
Alignment explanation
Indices: 99964878--99964912 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99964868 ATTATTAAGA
*
99964878 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
99964895 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
99964913 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:99965020 original size:147 final size:149
Alignment explanation
Indices: 99964866--99965140 Score: 491
Period size: 147 Copynumber: 1.9 Consensus size: 149
99964856 ATAAGAATAT
* *
99964866 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATCTTAATTAAAATATATTAAATAATAATTATGTTT
*
99964931 AAATATGAGTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
99964994 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
99965013 TAATTATTAAGAATTTTATTAAATTATATATCTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATCTTAATTAAAATATATTAAATAATAATTATGTTT
* *
99965078 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
99965141 CAATAATCAT
Statistics
Matches: 121, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
147 89 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATCTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:99965270 original size:44 final size:45
Alignment explanation
Indices: 99965221--99965315 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
99965211 TTACACCTCT
* * *
99965221 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
* ** *
99965265 ATTACATTCAACTAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
99965310 ATTACA
1 ATTACA
99965316 CCTCTAATCC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 17 0.40
45 26 0.60
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
Found at i:99965345 original size:16 final size:16
Alignment explanation
Indices: 99965296--99965347 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
99965286 GATTTGCTAT
* * *
99965296 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
99965312 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
99965328 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
99965344 TACA
1 TACA
99965348 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:99970104 original size:29 final size:29
Alignment explanation
Indices: 99970045--99970105 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
99970035 GTTATTATTT
* **
99970045 AAAACCAAATCGATATAAACGTTCATCCA
1 AAAACCAAATCGATATAAACGTCCAAACA
99970074 AAAACCAAATCGATATAAACGTCCAAACA
1 AAAACCAAATCGATATAAACGTCCAAACA
99970103 AAA
1 AAA
99970106 TTACATGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.54, C:0.23, G:0.07, T:0.16
Consensus pattern (29 bp):
AAAACCAAATCGATATAAACGTCCAAACA
Found at i:99976814 original size:12 final size:12
Alignment explanation
Indices: 99976797--99976823 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
99976787 ATCATCAGCA
99976797 TTGAAATTAGAT
1 TTGAAATTAGAT
99976809 TTGAAATTAGAT
1 TTGAAATTAGAT
99976821 TTG
1 TTG
99976824 TGGATGATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (12 bp):
TTGAAATTAGAT
Found at i:99980696 original size:30 final size:30
Alignment explanation
Indices: 99980660--99980716 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
99980650 CCGAGCCTAG
99980660 GGGCAAAA-GTGTAATTATGCAAAAGTTTAA
1 GGGCAAAATG-GTAATTATGCAAAAGTTTAA
* *
99980690 GGGCAAAATGGTAATTTTGCCAAAGTT
1 GGGCAAAATGGTAATTATGCAAAAGTT
99980717 CGTATTAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.28
Consensus pattern (30 bp):
GGGCAAAATGGTAATTATGCAAAAGTTTAA
Found at i:99981195 original size:47 final size:45
Alignment explanation
Indices: 99981140--99981314 Score: 196
Period size: 47 Copynumber: 3.8 Consensus size: 45
99981130 GTTGAGCATT
99981140 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT--AATGTC
* * *
99981187 CGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA-T--G--TC
*
99981234 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-TAATGTC
*
99981279 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99981315 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.05
45 3 0.03
46 35 0.32
47 54 0.49
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAATGTC
Found at i:99988262 original size:24 final size:24
Alignment explanation
Indices: 99988235--99988311 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
99988225 CTATCTAGGT
99988235 TTAATATATTACTTTCCTATAAGC
1 TTAATATATTACTTTCCTATAAGC
* * ** *
99988259 TTAATTTA-TAGTTT-CTATCTTGGT
1 TTAATATATTACTTTCCTA--TAAGC
* *
99988283 TTAATATGTTACTTTCCTATATGC
1 TTAATATATTACTTTCCTATAAGC
99988307 TTAAT
1 TTAAT
99988312 TTATAGTTTT
Statistics
Matches: 38, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 3 0.08
23 5 0.13
24 22 0.58
25 5 0.13
26 3 0.08
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (24 bp):
TTAATATATTACTTTCCTATAAGC
Found at i:99988277 original size:48 final size:48
Alignment explanation
Indices: 99988221--99988320 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
99988211 TTTCAGTGTT
99988221 GTTTCTATCTAGGTTTAATATATTACTTTCCTATAAGCTTAATTTATA
1 GTTTCTATCTAGGTTTAATATATTACTTTCCTATAAGCTTAATTTATA
* * *
99988269 GTTTCTATCTTGGTTTAATATGTTACTTTCCTATATGCTTAATTTATA
1 GTTTCTATCTAGGTTTAATATATTACTTTCCTATAAGCTTAATTTATA
99988317 GTTT
1 GTTT
99988321 TAATGTATTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.25, C:0.12, G:0.10, T:0.53
Consensus pattern (48 bp):
GTTTCTATCTAGGTTTAATATATTACTTTCCTATAAGCTTAATTTATA
Found at i:99989087 original size:48 final size:48
Alignment explanation
Indices: 99989017--99989112 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
99989007 ACAATACATT
99989017 AAAACTATAAATTAAGCATATAGGAAAGTAACATATTAAACCAAGATA
1 AAAACTATAAATTAAGCATATAGGAAAGTAACATATTAAACCAAGATA
* * *
99989065 AAAACTATAAATTAAGCTTATAGGAAAGTAATATATTAAACCTAGATA
1 AAAACTATAAATTAAGCATATAGGAAAGTAACATATTAAACCAAGATA
99989113 GAAGCAATAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.26
Consensus pattern (48 bp):
AAAACTATAAATTAAGCATATAGGAAAGTAACATATTAAACCAAGATA
Found at i:99990418 original size:26 final size:26
Alignment explanation
Indices: 99990389--99990496 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
99990379 TGGTACAAAT
*
99990389 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGCAAATGTTCCA
* * * *
99990415 TGATAATGGATTCGGTAAATATTCCA
1 TGATAATGGGTTAGGCAAATGTTCCA
*
99990441 TGATAATGGGTTAGGCAAATGATCCA
1 TGATAATGGGTTAGGCAAATGTTCCA
*
99990467 TGATAATTGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGCAAATGTTCCA
99990493 TGAT
1 TGAT
99990497 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (26 bp):
TGATAATGGGTTAGGCAAATGTTCCA
Found at i:99995640 original size:21 final size:22
Alignment explanation
Indices: 99995602--99995653 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
99995592 TATTTGCTAA
*
99995602 TATTA-ATTTTACTCAA-TTAT
1 TATTATATTTTACTAAATTTAT
*
99995622 TATTATATTTTATTAAATTTAT
1 TATTATATTTTACTAAATTTAT
99995644 T-TTAT-TTTTA
1 TATTATATTTTA
99995654 GAAATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 10 0.36
21 13 0.46
22 5 0.18
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATATTTTACTAAATTTAT
Found at i:99996771 original size:26 final size:27
Alignment explanation
Indices: 99996737--99996800 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
99996727 AGTGATTTAA
* *
99996737 ATAA-AAAATAGTTGAAATAAATAAT-
1 ATAATAAAATAGTTAAAATAAACAATG
*
99996762 AT-ATAGAAATATTTAAAATAAACAATG
1 ATAATA-AAATAGTTAAAATAAACAATG
99996789 ATAATAAAATAG
1 ATAATAAAATAG
99996801 AGAAGTGACA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
24 1 0.03
25 3 0.10
26 17 0.55
27 7 0.23
28 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (27 bp):
ATAATAAAATAGTTAAAATAAACAATG
Found at i:100000529 original size:3 final size:3
Alignment explanation
Indices: 100000516--100000724 Score: 72
Period size: 3 Copynumber: 69.3 Consensus size: 3
100000506 TTTAAAAAAA
* * * * * * *
100000516 AAT AAT GAT AAT AAA AAT AGT AGT AAT AAC AAT AAT AAT AAT AGT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
100000564 AGT AAT AAC AAT AAT AAT AGA- AAC AAC AAT AAT AAT AAC ATAT AAGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT A-AT AA-T
* * * * * *
100000611 AAAT GCAG AAG AA- AAG AA- AAT -GT AAT AAT AAT AAT ATT AATT AACT
1 -AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AA-T
* ** * *
100000657 -TT AAT AAT AAT -AT AAT AAT AAT GGT AAT AAT AAT TAT AAT ATT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
100000702 AACT AAT AAC AAT AAT GAT AAT A
1 AA-T AAT AAT AAT AAT AAT AAT A
100000725 GAAAAACCAA
Statistics
Matches: 151, Mismatches: 42, Indels: 26
0.69 0.19 0.12
Matches are distributed among these distances:
2 11 0.07
3 126 0.83
4 12 0.08
5 2 0.01
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:100000839 original size:21 final size:20
Alignment explanation
Indices: 100000801--100000839 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
100000791 TATTTGCTAA
*
100000801 TATTAATTTTACTCAATTAT
1 TATTAATTTTACTAAATTAT
*
100000821 TATTAAATTTTATTAAATT
1 TATT-AATTTTACTAAATT
100000840 TATTTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTAATTTTACTAAATTAT
Found at i:100015292 original size:20 final size:20
Alignment explanation
Indices: 100015263--100015317 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
100015253 AAAAAATCTG
100015263 TTGC-ATTTTTTTACCGTTC
1 TTGCTATTTTTTTACCGTTC
* * *
100015282 TTGCTATTTTTTTTAACTTTT
1 TTGCTA-TTTTTTTACCGTTC
*
100015303 TTGTTATTTTTTTAC
1 TTGCTATTTTTTTAC
100015318 TATTTTGTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.14
20 9 0.31
21 16 0.55
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (20 bp):
TTGCTATTTTTTTACCGTTC
Found at i:100015294 original size:21 final size:21
Alignment explanation
Indices: 100015268--100015315 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
100015258 ATCTGTTGCA
*
100015268 TTTTTTTACCGTTCTTGCTAT
1 TTTTTTTAACGTTCTTGCTAT
* * *
100015289 TTTTTTTAACTTTTTTGTTAT
1 TTTTTTTAACGTTCTTGCTAT
100015310 TTTTTT
1 TTTTTT
100015316 ACTATTTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.10, C:0.10, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTTTTTAACGTTCTTGCTAT
Found at i:100015749 original size:14 final size:14
Alignment explanation
Indices: 100015730--100015766 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
100015720 TTTCCACATT
*
100015730 TAAATGTGTTTATA
1 TAAATGTATTTATA
100015744 TAAATGTATTTATA
1 TAAATGTATTTATA
100015758 TAAATGTAT
1 TAAATGTAT
100015767 ATAATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.49
Consensus pattern (14 bp):
TAAATGTATTTATA
Found at i:100016771 original size:27 final size:27
Alignment explanation
Indices: 100016741--100016808 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
100016731 AAATTTAAAA
100016741 TAAATTTCAAAA-ATTCAAAATAAATTT
1 TAAATTTCAAAATATTCAAAA-AAATTT
* * *
100016768 TAAAATTCAAAATATTTATAAAAATTT
1 TAAATTTCAAAATATTCAAAAAAATTT
*
100016795 TAAAATTTTAAAAT
1 T-AAATTTCAAAAT
100016809 TATAATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 18 0.53
28 16 0.47
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
TAAATTTCAAAATATTCAAAAAAATTT
Found at i:100016773 original size:8 final size:8
Alignment explanation
Indices: 100016762--100016832 Score: 52
Period size: 8 Copynumber: 8.4 Consensus size: 8
100016752 AATTCAAAAT
100016762 AAATTTTA
1 AAATTTTA
**
100016770 AAATTCAA
1 AAATTTTA
100016778 AATATTTATAA
1 AA-ATTT-T-A
100016789 AAATTTTA
1 AAATTTTA
100016797 AAATTTTA
1 AAATTTTA
*
100016805 AAATTATA
1 AAATTTTA
**
100016813 ATTTTTTTA
1 A-AATTTTA
*
100016822 AAATTCTA
1 AAATTTTA
100016830 AAA
1 AAA
100016833 AAATATATAA
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
8 32 0.67
9 9 0.19
10 4 0.08
11 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (8 bp):
AAATTTTA
Found at i:100016774 original size:19 final size:20
Alignment explanation
Indices: 100016729--100016781 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
100016719 TTACAAAAAA
*
100016729 AAAAATTTAAAATAAATTTC
1 AAAAATTCAAAATAAATTTC
100016749 AAAAATTCAAAATAAATTT-
1 AAAAATTCAAAATAAATTTC
*
100016768 TAAAATTCAAAATA
1 AAAAATTCAAAATA
100016782 TTTATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATTCAAAATAAATTTC
Found at i:100016791 original size:19 final size:19
Alignment explanation
Indices: 100016729--100016793 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
100016719 TTACAAAAAA
* *
100016729 AAAAATTTAAAATAAATTTC
1 AAAAATTCAAAAT-AATTTT
100016749 AAAAATTCAAAATAAATTTT
1 AAAAATTCAAAAT-AATTTT
100016769 -AAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
100016787 AAAAATT
1 AAAAATT
100016794 TTAAAATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
17 4 0.10
18 1 0.02
19 18 0.44
20 18 0.44
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:100017688 original size:19 final size:18
Alignment explanation
Indices: 100017657--100017698 Score: 75
Period size: 19 Copynumber: 2.3 Consensus size: 18
100017647 TTTTTCACTC
100017657 CTTCTTCTGCTGCTGCTG
1 CTTCTTCTGCTGCTGCTG
100017675 CTTCTTCTTGCTGCTGCTG
1 CTTCTTC-TGCTGCTGCTG
100017694 CTTCT
1 CTTCT
100017699 GTTGGGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.00, C:0.33, G:0.19, T:0.48
Consensus pattern (18 bp):
CTTCTTCTGCTGCTGCTG
Found at i:100022036 original size:18 final size:18
Alignment explanation
Indices: 100021996--100022050 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 18
100021986 AATAATTTAT
100021996 TTTTA-TAAAAATTTAATAA
1 TTTTAGTAAAAA-TTAA-AA
100022015 -TTTAGTAAAAATTAAAA
1 TTTTAGTAAAAATTAAAA
*
100022032 TTTTATGTGAATAATTAAA
1 TTTTA-GT-AAAAATTAAA
100022051 GCAAATTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 2 0.06
18 12 0.39
19 8 0.26
20 9 0.29
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
TTTTAGTAAAAATTAAAA
Found at i:100035807 original size:9 final size:9
Alignment explanation
Indices: 100035795--100035835 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
100035785 GCAATTAATT
100035795 AAATTTAAA
1 AAATTTAAA
*
100035804 AAATATAAAA
1 AAAT-TTAAA
100035814 AAATTTAAA
1 AAATTTAAA
*
100035823 AAATTCAAA
1 AAATTTAAA
100035832 AAAT
1 AAAT
100035836 ATAATTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (9 bp):
AAATTTAAA
Found at i:100035819 original size:19 final size:18
Alignment explanation
Indices: 100035795--100035835 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
100035785 GCAATTAATT
100035795 AAATTTAAAAAATATAAAA
1 AAATTTAAAAAAT-TAAAA
*
100035814 AAATTTAAAAAATTCAAA
1 AAATTTAAAAAATTAAAA
100035832 AAAT
1 AAAT
100035836 ATAATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
AAATTTAAAAAATTAAAA
Found at i:100057412 original size:26 final size:26
Alignment explanation
Indices: 100057382--100057435 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
100057372 GAGAATCACA
100057382 TTGTCATATTCATGGAAAAGTAACTC
1 TTGTCATATTCATGGAAAAGTAACTC
100057408 TTGTCATATTCATGGAAAAGTAACTC
1 TTGTCATATTCATGGAAAAGTAACTC
100057434 TT
1 TT
100057436 AATGGAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (26 bp):
TTGTCATATTCATGGAAAAGTAACTC
Found at i:100057763 original size:13 final size:13
Alignment explanation
Indices: 100057742--100057781 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
100057732 TAAAAATCAT
*
100057742 AAAAA-TTATAGA
1 AAAAATTTATAAA
*
100057754 CAAAATTTATAAA
1 AAAAATTTATAAA
100057767 AAAAATTTATAAA
1 AAAAATTTATAAA
100057780 AA
1 AA
100057782 TTTTAAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (13 bp):
AAAAATTTATAAA
Found at i:100059425 original size:17 final size:18
Alignment explanation
Indices: 100059403--100059437 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
100059393 ATGTATAGTA
*
100059403 AAATATTTAAAA-AAATT
1 AAATATATAAAAGAAATT
100059420 AAATATATAAAAGAAATT
1 AAATATATAAAAGAAATT
100059438 GGAAACATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
AAATATATAAAAGAAATT
Found at i:100068915 original size:31 final size:31
Alignment explanation
Indices: 100068870--100068932 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
100068860 TTTTACTCTT
100068870 ACATATGACAGTCCTTTTTGTGTTTATGCAA
1 ACATATGACAGTCCTTTTTGTGTTTATGCAA
* *
100068901 ACATATGCCGGTCCTTTTTGTGTTTATGCAA
1 ACATATGACAGTCCTTTTTGTGTTTATGCAA
100068932 A
1 A
100068933 AGAATTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (31 bp):
ACATATGACAGTCCTTTTTGTGTTTATGCAA
Found at i:100072393 original size:16 final size:16
Alignment explanation
Indices: 100072372--100072408 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
100072362 TCTTATTTAT
100072372 AAAAAGTTATAACAAA
1 AAAAAGTTATAACAAA
100072388 AAAAAGTTATAACAAA
1 AAAAAGTTATAACAAA
100072404 AAAAA
1 AAAAA
100072409 TATGAACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAAAGTTATAACAAA
Found at i:100072950 original size:23 final size:23
Alignment explanation
Indices: 100072924--100072974 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
100072914 CCCACGCCAA
*
100072924 GCGCCAACACGACCCTCGTACAC
1 GCGCCAACACGACCCCCGTACAC
100072947 GCGCCAACACGACCCCCGTACAC
1 GCGCCAACACGACCCCCGTACAC
100072970 GCGCC
1 GCGCC
100072975 TTGCTCCGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.24, C:0.51, G:0.20, T:0.06
Consensus pattern (23 bp):
GCGCCAACACGACCCCCGTACAC
Found at i:100075574 original size:131 final size:131
Alignment explanation
Indices: 100075333--100075688 Score: 401
Period size: 131 Copynumber: 2.7 Consensus size: 131
100075323 CATTCATTCA
* * *
100075333 AAAATTCTTCAAAACGAAGATGAGATTCGATGTTTGGAAATTCGAAGAATCGTGCCCTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGAAATTCGAAGAATCGTGCCCTAACGTGT
100075398 TGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGTCTTT
66 TGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGTCTTT
100075463 T
131 T
* * * ** *
100075464 AAAATTCTTCAAAATGAAGACGAGGTTCGATATTTAGTAATTCGCGGAATCGTGCCTTAACGTGT
1 AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGAAATTCGAAGAATCGTGCCCTAACGTGT
* * * * * **
100075529 TGGGTTGCAATTTCGCGTTTGCTCAAAGTAATCGAGTATCCCTTCAAAATTTCATTCATATCTTC
66 TGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGTCTT-
*
100075594 TA
130 TT
* * * * * *** * *
100075596 AAAATTATTTAAAACGAAGGCAATATTCGGCGTTT-GACAATTCG-AGAATCATGCCCTATCGTG
1 AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGA-AATTCGAAGAATCGTGCCCTAACGTG
** * *
100075659 TTGGGTTGTGATTTCTCGTTTGTTCAAAAT
65 TTGGGTTGCAATTTCACGTTTGCTCAAAAT
100075689 GATTGAACAT
Statistics
Matches: 186, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
131 154 0.83
132 32 0.17
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (131 bp):
AAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGAAATTCGAAGAATCGTGCCCTAACGTGT
TGGGTTGCAATTTCACGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGTCTTT
T
Found at i:100086632 original size:12 final size:12
Alignment explanation
Indices: 100086615--100086644 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
100086605 AGCCCGCCCA
100086615 TATTTTTTATAT
1 TATTTTTTATAT
100086627 TATTTTTTATAT
1 TATTTTTTATAT
*
100086639 AATTTT
1 TATTTT
100086645 AAAATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TATTTTTTATAT
Found at i:100086799 original size:30 final size:30
Alignment explanation
Indices: 100086763--100086823 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
100086753 CAATTTAACA
* *
100086763 AGCAAATGCCTCTAAAATAATAACAAAATT
1 AGCAAATACCTCTAAAATAATAAAAAAATT
* *
100086793 AGCAAATATCTTTAAAATAATAAAAAAATT
1 AGCAAATACCTCTAAAATAATAAAAAAATT
100086823 A
1 A
100086824 ACAATAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.26
Consensus pattern (30 bp):
AGCAAATACCTCTAAAATAATAAAAAAATT
Found at i:100086883 original size:22 final size:22
Alignment explanation
Indices: 100086858--100086900 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
100086848 ATCCAAAATA
100086858 ATAACAAC-AAAATAGTAGCAAC
1 ATAA-AACTAAAATAGTAGCAAC
*
100086880 ATAATACTAAAATAGTAGCAA
1 ATAAAACTAAAATAGTAGCAA
100086901 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.58, C:0.14, G:0.09, T:0.19
Consensus pattern (22 bp):
ATAAAACTAAAATAGTAGCAAC
Found at i:100088480 original size:17 final size:15
Alignment explanation
Indices: 100088448--100088477 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
100088438 AAATGGAAAT
100088448 AAAAATAAAAATATA
1 AAAAATAAAAATATA
*
100088463 AAAAATTAAAATATA
1 AAAAATAAAAATATA
100088478 TAATTTAGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATAAAAATATA
Found at i:100088480 original size:25 final size:25
Alignment explanation
Indices: 100088452--100088548 Score: 67
Period size: 25 Copynumber: 3.9 Consensus size: 25
100088442 GGAAATAAAA
100088452 ATAAAAATATA-AAAAATTAAAA-T
1 ATAAAAATATACAAAAATTAAAATT
* * *
100088475 AT-ATAATTTAGCAAAAAATAAAAATT
1 ATAAAAATATA-C-AAAAATTAAAATT
* **
100088501 ATAAAAATTTATTAAAA-TAAAATTT
1 ATAAAAATATACAAAAATTAAAA-TT
* *
100088526 ATAAAAAAATACAATAATTAAAA
1 ATAAAAATATACAAAAATTAAAA
100088549 GAAATTAGTT
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
22 6 0.11
23 2 0.04
24 4 0.07
25 28 0.51
26 8 0.15
27 7 0.13
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (25 bp):
ATAAAAATATACAAAAATTAAAATT
Found at i:100088532 original size:40 final size:38
Alignment explanation
Indices: 100088446--100088532 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 38
100088436 AAAAATGGAA
100088446 ATAAAAATAAAAATATAAAAAATTAAAATATATAATTT
1 ATAAAAATAAAAATATAAAAAATTAAAATATATAATTT
*
100088484 AGCAAAAAATAAAAATTATAAAAATTTATTAAAATA-A-AATTT
1 A--TAAAAATAAAAA-TATAAAAA---ATTAAAATATATAATTT
100088526 ATAAAAA
1 ATAAAAA
100088533 AATACAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
38 1 0.02
40 16 0.39
41 8 0.20
42 6 0.15
43 1 0.02
44 9 0.22
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (38 bp):
ATAAAAATAAAAATATAAAAAATTAAAATATATAATTT
Found at i:100088548 original size:42 final size:44
Alignment explanation
Indices: 100088448--100088554 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
100088438 AAATGGAAAT
*
100088448 AAAAATAAAAA-TATAAAAA---ATTAAAATATATAATTTAGCA
1 AAAAATAAAAATTATAAAAATTTATTAAAATATATAATTTAGAA
*
100088488 AAAAATAAAAATTATAAAAATTTATTAAAATA-A-AATTTATAA
1 AAAAATAAAAATTATAAAAATTTATTAAAATATATAATTTAGAA
*
100088530 AAAAATACAATAATTAAAAGAAATT
1 AAAAATA-AA-AATTATAA-AAATT
100088555 AGTTGGAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
40 11 0.19
41 8 0.14
42 14 0.25
43 3 0.05
44 16 0.28
45 5 0.09
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (44 bp):
AAAAATAAAAATTATAAAAATTTATTAAAATATATAATTTAGAA
Found at i:100088743 original size:15 final size:15
Alignment explanation
Indices: 100088697--100088743 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
100088687 TTGTATATAT
*
100088697 TATTTTAAAATTTTA
1 TATTTTAGAATTTTA
* *
100088712 AATTTTAGAATTATA
1 TATTTTAGAATTTTA
100088727 TATTTTAGAATTTTA
1 TATTTTAGAATTTTA
100088742 TA
1 TA
100088744 AAAAATATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (15 bp):
TATTTTAGAATTTTA
Found at i:100088909 original size:21 final size:21
Alignment explanation
Indices: 100088885--100088924 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
100088875 CTAGTCAATG
100088885 CCGATCAACGATCAATCAACA
1 CCGATCAACGATCAATCAACA
* *
100088906 CCGATCAACGGTCTATCAA
1 CCGATCAACGATCAATCAA
100088925 AGTTAAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.33, G:0.12, T:0.17
Consensus pattern (21 bp):
CCGATCAACGATCAATCAACA
Done.