Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 36 of 318
Found at i:13536495 original size:64 final size:64
Alignment explanation
Indices: 13536411--13536587 Score: 249
Period size: 64 Copynumber: 2.8 Consensus size: 64
13536401 ATATATATTT
*
13536411 AAAGTTCTTGAGCTGTATTTAATGTATGAATTTTATATACATATGTGGTTCAAATATAGGTTAC
1 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTATATACATATGTGGTTCAAATATAGGTTAC
*
13536475 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTACT-TACATATGTGGTTCGAATATAGGTTAC
1 AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTA-TATACATATGTGGTTCAAATATAGGTTAC
*
13536539 AAA-TTCTTTGAGCTGAATTTTAATGT-TGTAA--AT-TATACATATGTGGTTC
1 AAAGTTC-TTGAGCTGAA-TTTAATGTATG-AATTTTATATACATATGTGGTTC
13536588 GAATGTTTGT
Statistics
Matches: 105, Mismatches: 3, Indels: 12
0.88 0.03 0.10
Matches are distributed among these distances:
61 1 0.01
62 14 0.13
63 4 0.04
64 75 0.71
65 11 0.10
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (64 bp):
AAAGTTCTTGAGCTGAATTTAATGTATGAATTTTATATACATATGTGGTTCAAATATAGGTTAC
Found at i:13536766 original size:41 final size:41
Alignment explanation
Indices: 13536707--13536863 Score: 185
Period size: 41 Copynumber: 3.9 Consensus size: 41
13536697 ATATGAGATT
* * * *
13536707 TTCAGGCTTAATGCCTAGCAGGCTTGATGCCGGTGAATTAT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
*
13536748 TTTAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
*
13536789 TTCAGACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAAATGAA
1 TTCAGACTTTATGTCTAGCAGGC-TTGATGCCGGTG-AATTAA
* * * *
13536831 -TC-GGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTG
13536864 TTTTATATAG
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.02
40 24 0.24
41 68 0.67
42 8 0.08
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.34
Consensus pattern (41 bp):
TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAATTAA
Found at i:13537550 original size:14 final size:15
Alignment explanation
Indices: 13537526--13537560 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
13537516 TACTTTAATC
13537526 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
13537541 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
13537556 ATGGT
1 ATGGT
13537561 AATATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:13538159 original size:14 final size:14
Alignment explanation
Indices: 13538140--13538169 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
13538130 GAATTCCGGA
13538140 GGGTTCTCATGGGT
1 GGGTTCTCATGGGT
13538154 GGGTTCTCATGGGT
1 GGGTTCTCATGGGT
13538168 GG
1 GG
13538170 TTATACCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (14 bp):
GGGTTCTCATGGGT
Found at i:13540568 original size:18 final size:18
Alignment explanation
Indices: 13540545--13540809 Score: 117
Period size: 18 Copynumber: 14.3 Consensus size: 18
13540535 GAATAATTAT
13540545 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
13540563 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
13540581 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
13540599 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
*
13540625 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
13540643 TTATTCAGTGAA-A-TCAG
1 TTATTCAGT-AACAGTCAG
* * * * *
13540660 ATATGCAGTAATTATTAAG
1 TTATTCAGTAA-CAGTCAG
*
13540679 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAGTCAG
* *
13540696 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
13540715 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* * *
13540733 TTATTCAGTAATATTTAG
1 TTATTCAGTAACAGTCAG
13540751 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
13540769 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * * *
13540787 TTATCCGGTAATAATCAG
1 TTATTCAGTAACAGTCAG
13540805 TTATT
1 TTATT
13540810 TTATACCTAT
Statistics
Matches: 182, Mismatches: 47, Indels: 36
0.69 0.18 0.14
Matches are distributed among these distances:
16 2 0.01
17 13 0.07
18 133 0.73
19 17 0.09
21 2 0.01
22 1 0.01
23 2 0.01
26 12 0.07
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:13540587 original size:36 final size:36
Alignment explanation
Indices: 13540545--13540809 Score: 133
Period size: 36 Copynumber: 7.1 Consensus size: 36
13540535 GAATAATTAT
*
13540545 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * ** **
13540581 TTATTCAATAATAACCAGTTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTAACAGTCAGTTATTCAGTA---A-C-A---ATCAA
* *
13540625 TTATTCAGTAACAGTCAATTATTCAGTGA-AATCAGA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCA-A
* * * * * *
13540661 -TATGCAGTAATTATTAAGTTATTCAGTAGCAGTC-A
1 TTATTCAGTAA-CAGTCAGTTATTCAGTAACAATCAA
* * **
13540696 TTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
* * * *
13540733 TTATTCAGTAATATTTAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATC-AA
* * * * * *
13540770 -TATCCAGTAACAGTCAATTATCCGGTAATAATCAG
1 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
13540805 TTATT
1 TTATT
13540810 TTATACCTAT
Statistics
Matches: 163, Mismatches: 50, Indels: 32
0.67 0.20 0.13
Matches are distributed among these distances:
35 14 0.09
36 104 0.64
37 15 0.09
38 1 0.01
39 1 0.01
40 1 0.01
41 2 0.01
44 25 0.15
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (36 bp):
TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAA
Found at i:13540688 original size:54 final size:55
Alignment explanation
Indices: 13540624--13540743 Score: 165
Period size: 54 Copynumber: 2.2 Consensus size: 55
13540614 CAATTGATCG
* *
13540624 GTTATTCAGTAACAGTCAATT-ATTCAGTGA-AATCAGATATGCAGTAATTATTAA
1 GTTATTCAGTAACAGTC-ATTCATTCAGTGACAATCAGATATGCAGTAATGATCAA
* * *
13540678 GTTATTCAGTAGCAGTCATTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 GTTATTCAGTAACAGTCATTCATTCAGTGACAATCAGATATGCAGTAATGATCAA
13540733 -TTATTCAGTAA
1 GTTATTCAGTAA
13540744 TATTTAGTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
53 3 0.05
54 35 0.60
55 20 0.34
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (55 bp):
GTTATTCAGTAACAGTCATTCATTCAGTGACAATCAGATATGCAGTAATGATCAA
Found at i:13540798 original size:72 final size:72
Alignment explanation
Indices: 13540630--13540809 Score: 188
Period size: 72 Copynumber: 2.5 Consensus size: 72
13540620 ATCGGTTATT
* *
13540630 CAGTAACAGTCAATTATTCAGTGAA-ATCAGA-TATGCAGTAATTATTAAGTTATTCAGTAGCAG
1 CAGTAACAGTCAATTATTCAGT-AATATCA-ATTATTCAGTAATTATTAAGTTATTCAGTAACAG
* *
13540693 TCATTCATT
64 TCAATCATC
* * * *
13540702 CAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAA-TATTTAGTTATTCAGTAACAGT
1 CAGTAACAGTCAATTATTCAGTAAT-ATCAATTATTCAGTAATTATTAAGTTATTCAGTAACAGT
13540766 CTAAT-ATC
65 C-AATCATC
* * *
13540774 CAGTAACAGTCAATTATCCGGTAATAATCAGTTATT
1 CAGTAACAGTCAATTATTCAGTAAT-ATCAATTATT
13540810 TTATACCTAT
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
71 2 0.02
72 72 0.81
73 15 0.17
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (72 bp):
CAGTAACAGTCAATTATTCAGTAATATCAATTATTCAGTAATTATTAAGTTATTCAGTAACAGTC
AATCATC
Found at i:13562635 original size:40 final size:40
Alignment explanation
Indices: 13562580--13562656 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
13562570 GGCACTCTTT
13562580 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
1 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
13562620 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATC
1 CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATC
13562657 TTGTTGAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (40 bp):
CTAAGGCTTTATTTAGGTAAACAACAAACAAGTAATCATG
Found at i:13567826 original size:39 final size:39
Alignment explanation
Indices: 13567783--13567889 Score: 205
Period size: 39 Copynumber: 2.7 Consensus size: 39
13567773 TTTTATTGAT
13567783 TGGTTAACGGGAAGATGATGTCATAGATTTTAAAATTAA
1 TGGTTAACGGGAAGATGATGTCATAGATTTTAAAATTAA
13567822 TGGTTAACGGGAAGATGATGTCATAGATTTTAAAATTAA
1 TGGTTAACGGGAAGATGATGTCATAGATTTTAAAATTAA
*
13567861 TGGTTAACAGGAAGATGATGTCATAGATT
1 TGGTTAACGGGAAGATGATGTCATAGATT
13567890 ACATAATAAT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (39 bp):
TGGTTAACGGGAAGATGATGTCATAGATTTTAAAATTAA
Found at i:13571428 original size:25 final size:25
Alignment explanation
Indices: 13571400--13571450 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
13571390 TCATCTTTTC
*
13571400 ATTAACTATATAATTGTTGGTGATA
1 ATTAACTATATAATTGTTGGAGATA
*
13571425 ATTAACTATTTAATTGTTGGAGATA
1 ATTAACTATATAATTGTTGGAGATA
13571450 A
1 A
13571451 AAATATAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (25 bp):
ATTAACTATATAATTGTTGGAGATA
Found at i:13578882 original size:15 final size:15
Alignment explanation
Indices: 13578864--13578896 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
13578854 AACAACCTGA
13578864 ATGGTTCATTGGTGC
1 ATGGTTCATTGGTGC
13578879 ATGGTTCATTGGTGC
1 ATGGTTCATTGGTGC
13578894 ATG
1 ATG
13578897 CATGATAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.33, T:0.39
Consensus pattern (15 bp):
ATGGTTCATTGGTGC
Found at i:13583378 original size:25 final size:25
Alignment explanation
Indices: 13583350--13583409 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
13583340 CAAATTTTGA
*
13583350 TATTTCGATCCGAACAAATCTTTAC
1 TATTTCAATCCGAACAAATCTTTAC
* **
13583375 TATTTTAATCTTAACAAATCTTTAC
1 TATTTCAATCCGAACAAATCTTTAC
*
13583400 TATTTTAATC
1 TATTTCAATC
13583410 TTAATCAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.33, C:0.18, G:0.03, T:0.45
Consensus pattern (25 bp):
TATTTCAATCCGAACAAATCTTTAC
Found at i:13583410 original size:25 final size:25
Alignment explanation
Indices: 13583362--13583413 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
13583352 TTTCGATCCG
13583362 AACAAATCTTTACTATTTTAATCTT
1 AACAAATCTTTACTATTTTAATCTT
13583387 AACAAATCTTTACTATTTTAATCTT
1 AACAAATCTTTACTATTTTAATCTT
13583412 AA
1 AA
13583414 TCAGTAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (25 bp):
AACAAATCTTTACTATTTTAATCTT
Found at i:13584392 original size:21 final size:22
Alignment explanation
Indices: 13584350--13584391 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
13584340 TTTAGTCAAC
13584350 GTAAAATTATCTTTGTATTTTT
1 GTAAAATTATCTTTGTATTTTT
*
13584372 GTAAAA-TATC-TTGTCTTTTT
1 GTAAAATTATCTTTGTATTTTT
13584392 TTTTGTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 4 0.21
22 6 0.32
ACGTcount: A:0.26, C:0.07, G:0.10, T:0.57
Consensus pattern (22 bp):
GTAAAATTATCTTTGTATTTTT
Found at i:13584392 original size:22 final size:22
Alignment explanation
Indices: 13584350--13584393 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
13584340 TTTAGTCAAC
*
13584350 GTAAAATTATCTTTGTATTTTT
1 GTAAAATTATCTTTCTATTTTT
*
13584372 GTAAAA-TATCTTGTCTTTTTTT
1 GTAAAATTATCTT-TCTATTTTT
13584394 TTGTTTAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.25, C:0.07, G:0.09, T:0.59
Consensus pattern (22 bp):
GTAAAATTATCTTTCTATTTTT
Found at i:13591639 original size:51 final size:51
Alignment explanation
Indices: 13591579--13591679 Score: 125
Period size: 51 Copynumber: 2.0 Consensus size: 51
13591569 AAATTTAAAT
* * * *
13591579 TTAACTCTC-AACTTT-TACATATTACATCAATTTAGTCATAATTTTAAAAAA
1 TTAACTCTCAAAATTTATAAATATT-C-TCAATTTAATCATAATTCTAAAAAA
*
13591630 TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCTTAATTCTAAAAA
1 TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCATAATTCTAAAAA
13591680 CTTCAAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
51 30 0.70
52 6 0.14
53 7 0.16
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.42
Consensus pattern (51 bp):
TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCATAATTCTAAAAAA
Found at i:13591706 original size:329 final size:323
Alignment explanation
Indices: 13591114--13591717 Score: 901
Period size: 329 Copynumber: 1.9 Consensus size: 323
13591104 TTAAAAACTT
*
13591114 TTATTTTAGACACCTAAAATAAATATTTACAATTTAAGCACCCACGTTACATAGTTTAATTATTT
1 TTATTTTAGACACCTAAAATAAATATTTACAATTTAAGCACCCACATTACATAGTTTAATTATTT
* *
13591179 TAGTCACTTCCGTTAAAATCAGAAATAACAAGTTGACGTAACTATTAAAGAAAATCAATATAATA
66 TAGTCACTTCCGTTAAAATCACAAATAACAAATTGACGTAACTATTAAAGAAAATCAATATAATA
* * * *
13591244 ATAAATATAGCTCTAAATTTTTACATATTACATTAATTTAGTCGTAATTTTAAAAAATTAACTCT
131 ATAAATATAACTCTAAACTTTTACATATTACATCAATTTAGTCATAATTTTAAAAAATTAACTCT
13591309 CAAAATGTACAAATATTCTCAATCTAATCTTAATTCTAAAAACTAAAATATATATATAAATAAAT
196 CAAAATGTACAAATATTCTCAATCTAATCTTAATTCTAAAAACTAAAATATATATATAAATAAAT
13591374 ATTAATATTAAATAATAATAAAAAACTTGCCATGCGTCACTAAATATATACCCGCTTGACTGA
261 ATTAATATTAAATAATAATAAAAAACTTGCCATGCGTCACTAAATATATACCCGCTTGACTGA
* * *
13591437 TTATTTTAGACACTTAAAATAAA-AGTTTATAATTTAAGCACCCACATTATATAGTTTAATTATT
1 TTATTTTAGACACCTAAAATAAATA-TTTACAATTTAAGCACCCACATTACATAGTTTAATTATT
* * * * * *
13591501 TT-GATCAGTTCTGTTAAAATCACAAATGATAAATTGATGTGACTATTAAAGAAAATCGATATAA
65 TTAG-TCACTTCCGTTAAAATCACAAATAACAAATTGACGTAACTATTAAAGAAAATC-A-AT-A
* *
13591565 TAATAAATTTAAATTTAACTCTCAACTTTTACATATTACATCAATTTAGTCATAATTTTAAAAAA
126 TAAT-AA--TAAATATAACTCTAAACTTTTACATATTACATCAATTTAGTCATAATTTTAAAAAA
* * *
13591630 TTAACTCTCAAAATTTATAAATATTCTCAATTTAATCTTAATTCTAAAAACTTCAAAA-A-ATAT
188 TTAACTCTCAAAATGTACAAATATTCTCAATCTAATCTTAATTCTAAAAAC-T-AAAATATATAT
13591693 ATAAATAAATATTAATATTAAATAA
251 ATAAATAAATATTAATATTAAATAA
13591718 GAAAAACTTG
Statistics
Matches: 250, Mismatches: 21, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
322 2 0.01
323 105 0.42
324 1 0.00
325 2 0.01
326 5 0.02
327 2 0.01
329 127 0.51
330 2 0.01
331 4 0.02
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (323 bp):
TTATTTTAGACACCTAAAATAAATATTTACAATTTAAGCACCCACATTACATAGTTTAATTATTT
TAGTCACTTCCGTTAAAATCACAAATAACAAATTGACGTAACTATTAAAGAAAATCAATATAATA
ATAAATATAACTCTAAACTTTTACATATTACATCAATTTAGTCATAATTTTAAAAAATTAACTCT
CAAAATGTACAAATATTCTCAATCTAATCTTAATTCTAAAAACTAAAATATATATATAAATAAAT
ATTAATATTAAATAATAATAAAAAACTTGCCATGCGTCACTAAATATATACCCGCTTGACTGA
Found at i:13592361 original size:17 final size:17
Alignment explanation
Indices: 13592341--13592375 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13592331 TTGTTATGAG
*
13592341 TGGTATTTCAATTATTC
1 TGGTACTTCAATTATTC
13592358 TGGTACTTCAATTATTC
1 TGGTACTTCAATTATTC
13592375 T
1 T
13592376 TCCATTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.51
Consensus pattern (17 bp):
TGGTACTTCAATTATTC
Found at i:13598851 original size:30 final size:30
Alignment explanation
Indices: 13598805--13598928 Score: 205
Period size: 30 Copynumber: 4.1 Consensus size: 30
13598795 TTTTATTATG
*
13598805 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
13598836 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
13598866 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
13598896 -CAATTATTTGATACCCATATCTTTGATTTT
1 CCAA-TATTTGATACCCATATCTTTGACTTT
13598926 CCA
1 CCA
13598929 TAAATATGGA
Statistics
Matches: 89, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
29 3 0.03
30 77 0.87
31 9 0.10
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:13598860 original size:15 final size:15
Alignment explanation
Indices: 13598815--13598922 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
13598805 CCAATATCTC
13598815 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13598830 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13598845 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13598860 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13598875 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
13598890 GACTTTCAAT-TATTT
1 GA-TACCCATATCTTT
13598905 GATACCCATATCTTT
1 GATACCCATATCTTT
13598920 GAT
1 GAT
13598923 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:13603162 original size:50 final size:50
Alignment explanation
Indices: 13603040--13603288 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
13603030 GATAATAACA
* * ** * *
13603040 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
*
13603091 TGCCAATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
13603141 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
13603191 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
13603246 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
13603289 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 19, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 93 0.54
51 34 0.20
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:13603219 original size:100 final size:104
Alignment explanation
Indices: 13603039--13603288 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
13603029 TGATAATAAC
**
13603039 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCAATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCAATGCCATG
* *
13603104 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
13603141 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCAATGCCATG
13603204 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
13603246 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
13603289 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCAATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:13603404 original size:13 final size:13
Alignment explanation
Indices: 13603383--13603414 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13603373 GCTTGGATCA
*
13603383 TCATCAAATAAAT
1 TCATAAAATAAAT
13603396 TCATAAAATAAAT
1 TCATAAAATAAAT
13603409 TCATAA
1 TCATAA
13603415 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:13603658 original size:29 final size:30
Alignment explanation
Indices: 13603626--13603682 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13603616 CCTCGACTCT
13603626 AACTTTT-CAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
13603655 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
13603683 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:13608164 original size:30 final size:30
Alignment explanation
Indices: 13608118--13608211 Score: 136
Period size: 30 Copynumber: 3.1 Consensus size: 30
13608108 TTTTATTATG
*
13608118 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
13608149 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
13608179 -CAATTATTTGATGCCCATATCTTTGATTTT
1 CCAA-TATTTGATACCCATATCTTTGACTTT
13608209 CCA
1 CCA
13608212 TAAATATGGA
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
29 3 0.05
30 46 0.79
31 9 0.16
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:13608173 original size:15 final size:15
Alignment explanation
Indices: 13608128--13608205 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
13608118 CCAATATCTC
13608128 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13608143 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13608158 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
13608173 GACTTTCAAT-TATTT
1 GA-TACCCATATCTTT
*
13608188 GATGCCCATATCTTT
1 GATACCCATATCTTT
13608203 GAT
1 GAT
13608206 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:13617552 original size:25 final size:24
Alignment explanation
Indices: 13617517--13617565 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
13617507 ATATTAAAAT
*
13617517 TTATATAAATATTAAATAAATATAA
1 TTATATAAATATTAAAGAAA-ATAA
*
13617542 TTATATTAATATTAAAGAAAATAA
1 TTATATAAATATTAAAGAAAATAA
13617566 GAATCCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
TTATATAAATATTAAAGAAAATAA
Found at i:13622808 original size:21 final size:22
Alignment explanation
Indices: 13622779--13622825 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
13622769 CAGAAGGAGT
*
13622779 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
13622801 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
13622822 GAGT
1 GAGT
13622826 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:13623790 original size:156 final size:156
Alignment explanation
Indices: 13623506--13623817 Score: 624
Period size: 156 Copynumber: 2.0 Consensus size: 156
13623496 TATTTAGTTA
13623506 TTATTGCTATAAATATCTAAGTGAGTTCTGTCTAGTTGTTGGGTTTTAAGCGGGACCATTGTGAC
1 TTATTGCTATAAATATCTAAGTGAGTTCTGTCTAGTTGTTGGGTTTTAAGCGGGACCATTGTGAC
13623571 CCCTCCAATTTAACTGGGAATTTTCTTAGTATAATTGTTGGCATAATAATTATCTAAATATTTCT
66 CCCTCCAATTTAACTGGGAATTTTCTTAGTATAATTGTTGGCATAATAATTATCTAAATATTTCT
13623636 GATAATATTGTTATTAATATTATCGT
131 GATAATATTGTTATTAATATTATCGT
13623662 TTATTGCTATAAATATCTAAGTGAGTTCTGTCTAGTTGTTGGGTTTTAAGCGGGACCATTGTGAC
1 TTATTGCTATAAATATCTAAGTGAGTTCTGTCTAGTTGTTGGGTTTTAAGCGGGACCATTGTGAC
13623727 CCCTCCAATTTAACTGGGAATTTTCTTAGTATAATTGTTGGCATAATAATTATCTAAATATTTCT
66 CCCTCCAATTTAACTGGGAATTTTCTTAGTATAATTGTTGGCATAATAATTATCTAAATATTTCT
13623792 GATAATATTGTTATTAATATTATCGT
131 GATAATATTGTTATTAATATTATCGT
13623818 CGCTTCCGCA
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 156 1.00
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (156 bp):
TTATTGCTATAAATATCTAAGTGAGTTCTGTCTAGTTGTTGGGTTTTAAGCGGGACCATTGTGAC
CCCTCCAATTTAACTGGGAATTTTCTTAGTATAATTGTTGGCATAATAATTATCTAAATATTTCT
GATAATATTGTTATTAATATTATCGT
Found at i:13624632 original size:12 final size:12
Alignment explanation
Indices: 13624615--13624639 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13624605 TCTTTCTCCC
13624615 ACCCTAAGTTTG
1 ACCCTAAGTTTG
13624627 ACCCTAAGTTTG
1 ACCCTAAGTTTG
13624639 A
1 A
13624640 TTAAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
ACCCTAAGTTTG
Found at i:13632516 original size:21 final size:21
Alignment explanation
Indices: 13632478--13632529 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
13632468 GAAGAAAAAA
*
13632478 AAATCAATACCTAACATCAATC
1 AAATCAA-ACCCAACATCAATC
13632500 AAATCAAACCCAACATCAATC
1 AAATCAAACCCAACATCAATC
13632521 AAATCAAAC
1 AAATCAAAC
13632530 AAAAGAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATCAAACCCAACATCAATC
Found at i:13634765 original size:21 final size:22
Alignment explanation
Indices: 13634739--13634785 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
13634729 CTCTGCTCAA
*
13634739 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
13634760 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
13634782 ACTC
1 ACTC
13634786 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:13641685 original size:26 final size:26
Alignment explanation
Indices: 13641655--13641713 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
13641645 AGGTGGAAAA
*
13641655 TGTAATTAAATCCATAGTATAAATTT
1 TGTAATTAAATCCATAGTAAAAATTT
13641681 TGTAATTAAATCCATAGTAAAAATTT
1 TGTAATTAAATCCATAGTAAAAATTT
*
13641707 TGGAATT
1 TGTAATT
13641714 TATTAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.41
Consensus pattern (26 bp):
TGTAATTAAATCCATAGTAAAAATTT
Found at i:13649374 original size:16 final size:17
Alignment explanation
Indices: 13649343--13649378 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
13649333 TCATTAACAA
13649343 AATAGACTTAAATAAAT
1 AATAGACTTAAATAAAT
13649360 AATAGACTT-AATAAAT
1 AATAGACTTAAATAAAT
13649376 AAT
1 AAT
13649379 GATTTTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (17 bp):
AATAGACTTAAATAAAT
Found at i:13673756 original size:12 final size:13
Alignment explanation
Indices: 13673697--13673757 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
13673687 GTCATACATT
13673697 ATAAAAGAAAAAA
1 ATAAAAGAAAAAA
*
13673710 A-AAGAGGAAAAAA
1 ATAA-AAGAAAAAA
13673723 ATAAAGAGAAAAATA
1 ATAAA-AGAAAAA-A
13673738 ACGTAAAAG-AAAAA
1 A--TAAAAGAAAAAA
13673752 ATAAAA
1 ATAAAA
13673758 TAAATTTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
12 7 0.17
13 11 0.28
14 10 0.25
15 6 0.15
16 2 0.05
17 4 0.10
ACGTcount: A:0.77, C:0.02, G:0.13, T:0.08
Consensus pattern (13 bp):
ATAAAAGAAAAAA
Found at i:13673761 original size:17 final size:18
Alignment explanation
Indices: 13673699--13673761 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 18
13673689 CATACATTAT
* *
13673699 AAAAGAAAAAAAAAGAG-
1 AAAATAAAATAAAAGAGA
*
13673716 GAAA-AAAAT-AAAGAGA
1 AAAATAAAATAAAAGAGA
**
13673732 AAAATAACGTAAAAGA-A
1 AAAATAAAATAAAAGAGA
13673749 AAAATAAAATAAA
1 AAAATAAAATAAA
13673762 TTTAAAAATA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
15 6 0.17
16 7 0.19
17 18 0.50
18 5 0.14
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.08
Consensus pattern (18 bp):
AAAATAAAATAAAAGAGA
Found at i:13683918 original size:32 final size:32
Alignment explanation
Indices: 13683882--13683945 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
13683872 TTCAAGGGGA
13683882 ATACTTGTATCTTCATTTGATTTGAGAGGTTT
1 ATACTTGTATCTTCATTTGATTTGAGAGGTTT
13683914 ATACTTGTATCTTCATTTGATTTGAGAGGTTT
1 ATACTTGTATCTTCATTTGATTTGAGAGGTTT
13683946 TCATTTAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.09, G:0.19, T:0.50
Consensus pattern (32 bp):
ATACTTGTATCTTCATTTGATTTGAGAGGTTT
Found at i:13711728 original size:40 final size:40
Alignment explanation
Indices: 13711684--13711764 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
13711674 TTTGTGGTCC
13711684 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
1 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
13711724 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
1 TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
13711764 T
1 T
13711765 TGAATGGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.36
Consensus pattern (40 bp):
TCCAATTAATAAATTAACTTCAGTTGTCTAGCATGCATCA
Found at i:13721262 original size:8 final size:8
Alignment explanation
Indices: 13721249--13721277 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
13721239 TTATGTTTAG
13721249 TATATTAT
1 TATATTAT
13721257 TATATTAT
1 TATATTAT
13721265 TATATTAT
1 TATATTAT
13721273 TATAT
1 TATAT
13721278 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:13721310 original size:5 final size:5
Alignment explanation
Indices: 13721300--13721345 Score: 85
Period size: 5 Copynumber: 9.4 Consensus size: 5
13721290 TTATGTTTTA
13721300 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
13721346 AAACTAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 36 0.90
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:13722599 original size:15 final size:15
Alignment explanation
Indices: 13722579--13722635 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
13722569 CGATGAATTT
13722579 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
13722594 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
13722609 ATTGAATTTATATTG
1 ATTGAATTTATATTG
13722624 ATTGAA-TTATAT
1 ATTGAATTTATAT
13722636 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:13723049 original size:23 final size:23
Alignment explanation
Indices: 13723023--13723094 Score: 80
Period size: 21 Copynumber: 3.3 Consensus size: 23
13723013 CACTTTATGC
13723023 GTCGTATTTCAGGCACCTCGTGT
1 GTCGTATTTCAGGCACCTCGTGT
13723046 GTCGTA--TCAGGCACCTCGTGT
1 GTCGTATTTCAGGCACCTCGTGT
* * **
13723067 GTC-T-TTTTAGGCACTTTATGT
1 GTCGTATTTCAGGCACCTCGTGT
13723088 GTCGTAT
1 GTCGTAT
13723095 ACTGATCAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.02
21 32 0.78
22 1 0.02
23 7 0.17
ACGTcount: A:0.14, C:0.22, G:0.25, T:0.39
Consensus pattern (23 bp):
GTCGTATTTCAGGCACCTCGTGT
Found at i:13724812 original size:19 final size:19
Alignment explanation
Indices: 13724788--13724825 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
13724778 AGTTCAATGA
13724788 CTTAAAATAAAAACTTTCG
1 CTTAAAATAAAAACTTTCG
*
13724807 CTTAAAATGAAAACTTTCG
1 CTTAAAATAAAAACTTTCG
13724826 AATAGTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (19 bp):
CTTAAAATAAAAACTTTCG
Found at i:13727489 original size:13 final size:13
Alignment explanation
Indices: 13727471--13727495 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13727461 TATTTTAATA
13727471 TTATTTTGTGTGT
1 TTATTTTGTGTGT
13727484 TTATTTTGTGTG
1 TTATTTTGTGTG
13727496 CATTCGATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:13729198 original size:41 final size:41
Alignment explanation
Indices: 13729032--13729187 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
13729022 TTTATCGTTA
* * * *
13729032 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
13729073 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
13729114 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
13729155 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
13729188 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:13729458 original size:33 final size:32
Alignment explanation
Indices: 13729402--13729465 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
13729392 ATAGATATGT
13729402 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
13729434 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
13729466 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:13729482 original size:33 final size:33
Alignment explanation
Indices: 13729409--13729482 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
13729399 TGTATATATA
* * **
13729409 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
13729441 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
13729474 TGTATGTAT
1 TATATGTAT
13729483 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:13745393 original size:41 final size:41
Alignment explanation
Indices: 13745227--13745382 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
13745217 TTTATCGTTA
* * * *
13745227 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
13745268 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
13745309 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
13745350 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
13745383 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:13745655 original size:33 final size:32
Alignment explanation
Indices: 13745599--13745662 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
13745589 AGATATGTAT
13745599 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
13745631 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
13745663 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:13745679 original size:33 final size:33
Alignment explanation
Indices: 13745606--13745679 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
13745596 TATATATATA
* * **
13745606 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
13745638 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
13745671 TGTATGTAT
1 TATATGTAT
13745680 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:13746813 original size:50 final size:50
Alignment explanation
Indices: 13746738--13746914 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
13746728 CCATGGAAAC
13746738 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
13746788 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
13746838 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
13746888 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
13746915 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:13746930 original size:31 final size:31
Alignment explanation
Indices: 13746892--13747093 Score: 305
Period size: 31 Copynumber: 6.5 Consensus size: 31
13746882 AAATGACAAC
*
13746892 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
13746923 TGAAAAGTGGTAGTTTCCGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* * *
13746954 TGAAAAGTGATAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
13746985 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
13747016 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* **
13747047 TGAAAAATGGTAGCACCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
13747078 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
13747094 TGACTACAAG
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 155 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:13747111 original size:7 final size:7
Alignment explanation
Indices: 13747099--13747127 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
13747089 AGCTTTGACT
13747099 ACAAGTG
1 ACAAGTG
13747106 ACAAGTG
1 ACAAGTG
13747113 ACAAGTG
1 ACAAGTG
13747120 ACAAGTG
1 ACAAGTG
13747127 A
1 A
13747128 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:13747200 original size:47 final size:48
Alignment explanation
Indices: 13747131--13747256 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 48
13747121 CAAGTGATTT
* * *
13747131 CTGTATAAGACCATATTTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
13747178 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
13747226 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
13747257 TTATGTAAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 65 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:13755170 original size:50 final size:51
Alignment explanation
Indices: 13755114--13755250 Score: 195
Period size: 51 Copynumber: 2.7 Consensus size: 51
13755104 ATCTGGTACG
*
13755114 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGCTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGGCTACA
* * * ** * *
13755164 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGGCTACA
13755215 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
13755251 CACAATAGAT
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 35 0.47
51 40 0.53
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCGGCTACA
Found at i:13755242 original size:51 final size:50
Alignment explanation
Indices: 13755102--13755249 Score: 215
Period size: 50 Copynumber: 2.9 Consensus size: 50
13755092 GTAGCCAAAG
*
13755102 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
* * * * *
13755152 CCATCTGCTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
* *
13755202 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 -CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
13755250 TCACAATAGA
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 44 0.52
51 40 0.48
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (50 bp):
CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
Found at i:13757251 original size:6 final size:6
Alignment explanation
Indices: 13757240--13757265 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
13757230 TTCAATGCAA
13757240 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
13757266 GTGTAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:13768145 original size:9 final size:9
Alignment explanation
Indices: 13768131--13768155 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
13768121 AAACCTAAAA
13768131 CCCTTCTTT
1 CCCTTCTTT
13768140 CCCTTCTTT
1 CCCTTCTTT
13768149 CCCTTCT
1 CCCTTCT
13768156 CCCAACTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (9 bp):
CCCTTCTTT
Found at i:13769101 original size:22 final size:22
Alignment explanation
Indices: 13769060--13769102 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
13769050 CTATATATAC
* *
13769060 CTATAAGTGAAAAACGGTGCTA
1 CTATAAGGGAAAAACAGTGCTA
*
13769082 CTATAAGGGAAAAATAGTGCT
1 CTATAAGGGAAAAACAGTGCT
13769103 TGTGCTTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (22 bp):
CTATAAGGGAAAAACAGTGCTA
Found at i:13783229 original size:3 final size:3
Alignment explanation
Indices: 13783221--13783247 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
13783211 TTAAAATCAC
13783221 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
13783248 ACATTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13785117 original size:6 final size:6
Alignment explanation
Indices: 13785106--13785130 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13785096 AATTAATTAA
13785106 TTATGG TTATGG TTATGG TTATGG T
1 TTATGG TTATGG TTATGG TTATGG T
13785131 GGAGGGAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (6 bp):
TTATGG
Found at i:13787149 original size:3 final size:3
Alignment explanation
Indices: 13787141--13787183 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
13787131 GCATACTTCC
* * * *
13787141 TAA TAA TAA TGA TAA TGA TGA TAA TAA TAG TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
13787184 GTGTTCCTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:13790607 original size:35 final size:35
Alignment explanation
Indices: 13790561--13790636 Score: 152
Period size: 35 Copynumber: 2.2 Consensus size: 35
13790551 CTTTTCGTGT
13790561 ATATTGTATTGGGCTAATATAATATTTAATATATG
1 ATATTGTATTGGGCTAATATAATATTTAATATATG
13790596 ATATTGTATTGGGCTAATATAATATTTAATATATG
1 ATATTGTATTGGGCTAATATAATATTTAATATATG
13790631 ATATTG
1 ATATTG
13790637 ATTTCAATGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (35 bp):
ATATTGTATTGGGCTAATATAATATTTAATATATG
Found at i:13790674 original size:24 final size:24
Alignment explanation
Indices: 13790647--13790699 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
13790637 ATTTCAATGC
*
13790647 TTAATTTGATATTTAAATTTATTT
1 TTAATTTGATATTTAAATTTAATT
* *
13790671 TTAAATTGGTATTTAAATTTAATT
1 TTAATTTGATATTTAAATTTAATT
13790695 TTAAT
1 TTAAT
13790700 GTTTAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (24 bp):
TTAATTTGATATTTAAATTTAATT
Found at i:13791206 original size:9 final size:9
Alignment explanation
Indices: 13791192--13791225 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
13791182 TTAATGATAC
13791192 AATCAATTT
1 AATCAATTT
13791201 AATCAATTT
1 AATCAATTT
* *
13791210 AATAAATTA
1 AATCAATTT
13791219 AATCAAT
1 AATCAAT
13791226 AAAAAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (9 bp):
AATCAATTT
Found at i:13791253 original size:17 final size:16
Alignment explanation
Indices: 13791223--13791257 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
13791213 AAATTAAATC
13791223 AATAAAAAATTATAAA
1 AATAAAAAATTATAAA
13791239 AATAAAAAATATATAAA
1 AATAAAAAAT-TATAAA
13791256 AA
1 AA
13791258 ATTCAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAAAATTATAAA
Found at i:13795289 original size:95 final size:95
Alignment explanation
Indices: 13795175--13795352 Score: 277
Period size: 95 Copynumber: 1.9 Consensus size: 95
13795165 CTTTTTTATA
* * * *
13795175 AACACACTCGGTGCCATTCACGACTACAAC-AAAGAATGAATTATTCTTCATTTTAAATTCAATG
1 AACACACTCGGTCCCATTCACGACTACAACAAAAGAACGAATTATTCTT-AATATAAATTCAATG
13795239 CAAACGCAACGCATCTTCAGGAGATTCATAG
65 CAAACGCAACGCATCTTCAGGAGATTCATAG
* * *
13795270 AACACATTCGGTCCCATTCACGAGTACGACAAAAGAACGAATTATTCTTAATATAAATTCAATGC
1 AACACACTCGGTCCCATTCACGACTACAACAAAAGAACGAATTATTCTTAATATAAATTCAATGC
13795335 AAACGCAACGCATCTTCA
66 AAACGCAACGCATCTTCA
13795353 TCAGATATAT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
95 58 0.77
96 17 0.23
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (95 bp):
AACACACTCGGTCCCATTCACGACTACAACAAAAGAACGAATTATTCTTAATATAAATTCAATGC
AAACGCAACGCATCTTCAGGAGATTCATAG
Found at i:13797352 original size:17 final size:16
Alignment explanation
Indices: 13797326--13797365 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
13797316 TATCATTAGT
13797326 AATTTAAAATTTTATA
1 AATTTAAAATTTTATA
*
13797342 AATTATAAAATTTTATC
1 AATT-TAAAATTTTATA
13797359 AATTTAA
1 AATTTAA
13797366 GAGGTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTTAAAATTTTATA
Found at i:13809656 original size:21 final size:21
Alignment explanation
Indices: 13809617--13809657 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13809607 CCACAAGAAA
* * *
13809617 CCTCTTTATAAATATATTTCT
1 CCTCTTTACAAAGAGATTTCT
13809638 CCTCTTTACAAAGAGATTTC
1 CCTCTTTACAAAGAGATTTC
13809658 ATAGGGAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (21 bp):
CCTCTTTACAAAGAGATTTCT
Found at i:13815484 original size:32 final size:33
Alignment explanation
Indices: 13815448--13815510 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
13815438 TATATAATTC
* * *
13815448 ATAATTT-TTTTCACGTTGAAGACTTAAATTAA
1 ATAATTTATTCTCACATTGAAGACTGAAATTAA
*
13815480 ATAATTTATTCTCATATTGAAGACTGAAATT
1 ATAATTTATTCTCACATTGAAGACTGAAATT
13815511 CTTTTTATCC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 7 0.27
33 19 0.73
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.43
Consensus pattern (33 bp):
ATAATTTATTCTCACATTGAAGACTGAAATTAA
Found at i:13818815 original size:24 final size:24
Alignment explanation
Indices: 13818787--13818845 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
13818777 TCGAAATTAA
*
13818787 ATTGTAATTTTTATGATAGTAAAC
1 ATTGTAATTTTTACGATAGTAAAC
13818811 ATTGTAATTTTTACGATAGTAAAC
1 ATTGTAATTTTTACGATAGTAAAC
13818835 ATTGTAATTTT
1 ATTGTAATTTT
13818846 ATTATTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.47
Consensus pattern (24 bp):
ATTGTAATTTTTACGATAGTAAAC
Found at i:13819340 original size:13 final size:15
Alignment explanation
Indices: 13819316--13819348 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
13819306 TCCATCTTCA
13819316 TGTGATGGTGTGAGG
1 TGTGATGGTGTGAGG
13819331 -GTGA-GGTGTGAGG
1 TGTGATGGTGTGAGG
13819344 TGTGA
1 TGTGA
13819349 ATTAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (15 bp):
TGTGATGGTGTGAGG
Found at i:13819343 original size:7 final size:7
Alignment explanation
Indices: 13819316--13819348 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
13819306 TCCATCTTCA
13819316 TGTGATGG
1 TGTGA-GG
13819324 TGTGAGG
1 TGTGAGG
13819331 -GTGAGG
1 TGTGAGG
13819337 TGTGAGG
1 TGTGAGG
13819344 TGTGA
1 TGTGA
13819349 ATTAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 13 0.54
8 5 0.21
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (7 bp):
TGTGAGG
Found at i:13821194 original size:22 final size:22
Alignment explanation
Indices: 13821154--13821195 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13821144 TGGCCACCCA
*
13821154 CCTTGGCCACCAACTCCACCAC
1 CCTTGGCCACCAACACCACCAC
13821176 CCTTGGCCACCTAA-ACCACC
1 CCTTGGCCACC-AACACCACC
13821196 CCAACCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.24, C:0.52, G:0.10, T:0.14
Consensus pattern (22 bp):
CCTTGGCCACCAACACCACCAC
Found at i:13821322 original size:22 final size:22
Alignment explanation
Indices: 13821262--13821373 Score: 90
Period size: 22 Copynumber: 5.0 Consensus size: 22
13821252 GGGATGTGGG
*
13821262 TTTTTGGTTTTTTGGAGAAGGAT
1 TTTTTTGTTTTTTGGAGAAGG-T
*
13821285 TGTTCTTTG--TTTTGGAGGAGGT
1 T-TT-TTTGTTTTTTGGAGAAGGT
13821307 TTTTTTGTTTTTTGGAG--GTGT
1 TTTTTTGTTTTTTGGAGAAG-GT
13821328 TTTTTTGTTTTTTTGGAAAGAAGGT
1 TTTTTTG-TTTTTTGG--AGAAGGT
*
13821353 TATTTTTGTTTCTTGGA-AAGG
1 T-TTTTTGTTTTTTGGAGAAGG
13821374 CTAATTTTTG
Statistics
Matches: 75, Mismatches: 3, Indels: 23
0.74 0.03 0.23
Matches are distributed among these distances:
20 5 0.07
21 11 0.15
22 22 0.29
23 13 0.17
24 4 0.05
25 13 0.17
26 7 0.09
ACGTcount: A:0.14, C:0.02, G:0.29, T:0.55
Consensus pattern (22 bp):
TTTTTTGTTTTTTGGAGAAGGT
Found at i:13821325 original size:19 final size:21
Alignment explanation
Indices: 13821294--13821340 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
13821284 TTGTTCTTTG
*
13821294 TTTTGGAGGAGGTTTTTTTGTT
1 TTTTGGAGG-TGTTTTTTTGTT
13821316 TTTTGGAGGTGTTTTTTTGTT
1 TTTTGGAGGTGTTTTTTTGTT
13821337 TTTT
1 TTTT
13821341 TGGAAAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.06, C:0.00, G:0.28, T:0.66
Consensus pattern (21 bp):
TTTTGGAGGTGTTTTTTTGTT
Found at i:13821339 original size:20 final size:21
Alignment explanation
Indices: 13821270--13821339 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 21
13821260 GGTTTTTGGT
*
13821270 TTTTTGGAGAAGGATTGTTCTTTG
1 TTTTTGGAGGAGG-TT-TT-TTTG
13821294 -TTTTGGAGGAGGTTTTTTTG
1 TTTTTGGAGGAGGTTTTTTTG
*
13821314 TTTTTTGGAGG-TGTTTTTTTG
1 -TTTTTGGAGGAGGTTTTTTTG
13821335 TTTTT
1 TTTTT
13821340 TTGGAAAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 9 0.21
21 11 0.26
22 11 0.26
23 11 0.26
ACGTcount: A:0.10, C:0.01, G:0.29, T:0.60
Consensus pattern (21 bp):
TTTTTGGAGGAGGTTTTTTTG
Found at i:13821685 original size:3 final size:3
Alignment explanation
Indices: 13821671--13821755 Score: 63
Period size: 3 Copynumber: 28.0 Consensus size: 3
13821661 GAGCTTTGTT
* *
13821671 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
13821715 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
13821756 GATATGCCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 51 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:13821709 original size:27 final size:27
Alignment explanation
Indices: 13821670--13821755 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
13821660 AGAGCTTTGT
13821670 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
13821697 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
13821722 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
13821748 -TTATATTA
1 TTTATATTA
13821756 GATATGCCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 8 0.17
27 13 0.28
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:13821731 original size:21 final size:18
Alignment explanation
Indices: 13821671--13821751 Score: 90
Period size: 18 Copynumber: 4.2 Consensus size: 18
13821661 GAGCTTTGTT
*
13821671 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
13821691 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
13821709 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
13821730 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
13821748 TTAT
1 TTAT
13821752 ATTAGATATG
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
18 22 0.42
19 9 0.17
20 10 0.19
21 12 0.23
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:13824172 original size:5 final size:5
Alignment explanation
Indices: 13824115--13824165 Score: 66
Period size: 5 Copynumber: 9.8 Consensus size: 5
13824105 ATTTGTTAAA
* *
13824115 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATT ATATT ATAT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATATT ATATT ATAT
13824166 ATTATATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
5 32 0.80
6 8 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:13825511 original size:18 final size:19
Alignment explanation
Indices: 13825488--13825526 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
13825478 ATATATAGAT
13825488 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
13825506 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
13825525 AT
1 AT
13825527 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:13825876 original size:39 final size:39
Alignment explanation
Indices: 13825766--13825900 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
13825756 GACCTCGAGT
* * * *
13825766 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
13825807 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
13825845 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
13825884 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
13825901 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:13826044 original size:18 final size:19
Alignment explanation
Indices: 13826023--13826063 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
13826013 AATGAAATGA
13826023 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
13826041 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
13826060 GAAA
1 GAAA
13826064 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:13830627 original size:5 final size:5
Alignment explanation
Indices: 13830570--13830620 Score: 66
Period size: 5 Copynumber: 9.8 Consensus size: 5
13830560 ATGTGTTAAA
* *
13830570 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATT ATATT ATAT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATATT ATATT ATAT
13830621 ATTATATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
5 32 0.80
6 8 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:13832333 original size:39 final size:39
Alignment explanation
Indices: 13832223--13832357 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
13832213 GACGTCGAGT
* * * *
13832223 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
13832264 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
13832302 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
13832341 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
13832358 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:13833830 original size:15 final size:15
Alignment explanation
Indices: 13833810--13833854 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
13833800 TAATATATAT
*
13833810 TTCAATCAATATAAA
1 TTCAATCAAAATAAA
* *
13833825 TTCAATCAAAATGAT
1 TTCAATCAAAATAAA
*
13833840 TTCAATCAACATAAA
1 TTCAATCAAAATAAA
13833855 ATTGATAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.31
Consensus pattern (15 bp):
TTCAATCAAAATAAA
Found at i:13835141 original size:17 final size:17
Alignment explanation
Indices: 13835121--13835157 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
13835111 TTTCATTTCT
13835121 TTTATTTCATTTATTTA
1 TTTATTTCATTTATTTA
* *
13835138 TTTATTTTATTTCTTTA
1 TTTATTTCATTTATTTA
13835155 TTT
1 TTT
13835158 TATTATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTCATTTATTTA
Found at i:13835154 original size:13 final size:13
Alignment explanation
Indices: 13835121--13835161 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
13835111 TTTCATTTCT
13835121 TTTATTTCA-TTTA
1 TTTATTT-ATTTTA
13835134 TTTATTTATTTTA
1 TTTATTTATTTTA
*
13835147 TTTCTTTATTTTA
1 TTTATTTATTTTA
13835160 TT
1 TT
13835162 ATTAAACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 1 0.04
13 25 0.96
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:13835186 original size:23 final size:23
Alignment explanation
Indices: 13835156--13835208 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
13835146 ATTTCTTTAT
13835156 TTTATTA-TTAAACTAT-TATAATA
1 TTTATTATTTAAAC-ATGTAT-ATA
*
13835179 TTTATTATTTATACATGTATATA
1 TTTATTATTTAAACATGTATATA
13835202 TTTATTA
1 TTTATTA
13835209 ATACACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTATTATTTAAACATGTATATA
Found at i:13839886 original size:7 final size:7
Alignment explanation
Indices: 13839874--13839898 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13839864 CTTATATTTA
13839874 TATTTTT
1 TATTTTT
13839881 TATTTTT
1 TATTTTT
13839888 TATTTTT
1 TATTTTT
13839895 TATT
1 TATT
13839899 ACACCCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:13842720 original size:8 final size:8
Alignment explanation
Indices: 13842702--13842735 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
13842692 TTAATTTGAA
13842702 TGAGAAATT
1 TGAG-AATT
13842711 TGAGAATT
1 TGAGAATT
13842719 TGAGAATT
1 TGAGAATT
*
13842727 TGAAAATT
1 TGAGAATT
13842735 T
1 T
13842736 TTAAATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (8 bp):
TGAGAATT
Found at i:13843008 original size:16 final size:19
Alignment explanation
Indices: 13842987--13843032 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 19
13842977 ATTGTAACAT
13842987 ATTAATAATTTACA-A-A-
1 ATTAATAATTTACATACAC
**
13843003 ATTAATTTTTTACATACAC
1 ATTAATAATTTACATACAC
13843022 ATTAATAATTT
1 ATTAATAATTT
13843033 TCTTATGTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 12 0.52
17 1 0.04
18 1 0.04
19 9 0.39
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTAATAATTTACATACAC
Found at i:13843213 original size:16 final size:17
Alignment explanation
Indices: 13843192--13843225 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
13843182 TTATTTTGAG
*
13843192 ATATTT-ATATATTTTT
1 ATATTTGATAAATTTTT
13843208 ATATTTGATAAATTTTT
1 ATATTTGATAAATTTTT
13843225 A
1 A
13843226 AAAAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATATTTGATAAATTTTT
Found at i:13845098 original size:19 final size:19
Alignment explanation
Indices: 13845070--13845122 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
13845060 ATAGGAAGGG
13845070 ATAT-ATTTTAAAATT-AT
1 ATATAATTTTAAAATTAAT
*
13845087 ATATAAATTTT-AATTTAAT
1 ATAT-AATTTTAAAATTAAT
13845106 ATATAA-TTTAAAATTAA
1 ATATAATTTTAAAATTAA
13845123 ATCAATTCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 7 0.23
18 12 0.40
19 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATAATTTTAAAATTAAT
Found at i:13875690 original size:5 final size:5
Alignment explanation
Indices: 13875680--13875713 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
13875670 CATAATTTCC
* *
13875680 TTTTG TTTTG TTTTG TTTTG TTTTT TTTTA TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
13875714 TGCTGTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (5 bp):
TTTTG
Found at i:13882413 original size:21 final size:22
Alignment explanation
Indices: 13882371--13882414 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
13882361 TAAATAATTT
*
13882371 TATTTATATTTTAAATTGTAAA
1 TATTTATATTTTAAAGTGTAAA
13882393 TATTTA-ATTTTTAAAGT-TAAA
1 TATTTATA-TTTTAAAGTGTAAA
13882414 T
1 T
13882415 TTATGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
TATTTATATTTTAAAGTGTAAA
Found at i:13899289 original size:21 final size:22
Alignment explanation
Indices: 13899246--13899287 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
13899236 CCACATGGCA
*
13899246 ATTAGATTTAAATTAAAAAAAT
1 ATTACATTTAAATTAAAAAAAT
13899268 ATTACATTTAAATTAAAAAA
1 ATTACATTTAAATTAAAAAA
13899288 TAAAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
ATTACATTTAAATTAAAAAAAT
Found at i:13900917 original size:19 final size:20
Alignment explanation
Indices: 13900877--13900918 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
13900867 AATTATATTT
*
13900877 ATTTAAAATAAAAATATTAA
1 ATTTAAAATAAAAATATAAA
*
13900897 ATTTAAATTAAAAA-ATAAA
1 ATTTAAAATAAAAATATAAA
13900916 ATT
1 ATT
13900919 ACAATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTTAAAATAAAAATATAAA
Found at i:13900925 original size:32 final size:36
Alignment explanation
Indices: 13900880--13900949 Score: 94
Period size: 32 Copynumber: 2.1 Consensus size: 36
13900870 TATATTTATT
13900880 TAAAATAAAAATATT-AA-ATTT-AA-ATTAAAAAA
1 TAAAATAAAAATATTAAATATTTAAATATTAAAAAA
* *
13900912 TAAAATTACAATATTAAATATTTAAATATTAAAAAA
1 TAAAATAAAAATATTAAATATTTAAATATTAAAAAA
13900948 TA
1 TA
13900950 TTGTTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 13 0.41
33 2 0.06
34 4 0.12
35 2 0.06
36 11 0.34
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (36 bp):
TAAAATAAAAATATTAAATATTTAAATATTAAAAAA
Found at i:13900931 original size:7 final size:7
Alignment explanation
Indices: 13900888--13900944 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
13900878 TTTAAAATAA
13900888 AAATATT
1 AAATATT
13900895 AAAT-TT
1 AAATATT
13900901 -AA-ATT
1 AAATATT
* *
13900906 AAAAAAT
1 AAATATT
13900913 AAA-ATT
1 AAATATT
13900919 ACAATATT
1 A-AATATT
13900927 AAATATTT
1 AAATA-TT
13900935 AAATATT
1 AAATATT
13900942 AAA
1 AAA
13900945 AAATATTGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
5 4 0.10
6 7 0.17
7 20 0.48
8 11 0.26
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (7 bp):
AAATATT
Found at i:13900992 original size:21 final size:20
Alignment explanation
Indices: 13900968--13901012 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
13900958 TTTGATCGGC
*
13900968 CATTAATCGACGTTGACCAA
1 CATTAATCGACATTGACCAA
* *
13900988 TCATTAATTGGCATTGACCAA
1 -CATTAATCGACATTGACCAA
13901009 CATT
1 CATT
13901013 GACTGTGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (20 bp):
CATTAATCGACATTGACCAA
Found at i:13904297 original size:19 final size:19
Alignment explanation
Indices: 13904277--13904312 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13904267 TAAATTTATA
13904277 AAAAT-CATAAAAAAATAT
1 AAAATGCATAAAAAAATAT
13904295 AAAATGCATAAAAAAATA
1 AAAATGCATAAAAAAATA
13904313 CCATTTAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (19 bp):
AAAATGCATAAAAAAATAT
Found at i:13904562 original size:28 final size:29
Alignment explanation
Indices: 13904522--13904590 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
13904512 TCTTTACATT
*
13904522 TTTTATACTTTTCTTACG-CCTTTATAAAA
1 TTTTATA-ATTTCTTACGACCTTTATAAAA
**
13904551 TTTTATAATTTCTTACGATTTTTATAAAA
1 TTTTATAATTTCTTACGACCTTTATAAAA
*
13904580 TTTTACAATTT
1 TTTTATAATTT
13904591 TTATAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 9 0.26
29 26 0.74
ACGTcount: A:0.30, C:0.12, G:0.03, T:0.55
Consensus pattern (29 bp):
TTTTATAATTTCTTACGACCTTTATAAAA
Found at i:13904575 original size:19 final size:18
Alignment explanation
Indices: 13904551--13904603 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
13904541 CTTTATAAAA
* *
13904551 TTTTATAATTTCTTACGAT
1 TTTTATAAATT-TTACAAT
13904570 TTTTATAAAATTTTACAAT
1 TTTTAT-AAATTTTACAAT
13904589 TTTTATAAAATTTTA
1 TTTTAT-AAATTTTA
13904604 TGATTTTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 27 0.87
20 4 0.13
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTTATAAATTTTACAAT
Found at i:13904602 original size:29 final size:29
Alignment explanation
Indices: 13904542--13904604 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
13904532 TTCTTACGCC
* ** *
13904542 TTTATAAAATTTTATAATTTCTTACGATT
1 TTTATAAAATTTTACAATTTCTTAAAAAT
13904571 TTTATAAAATTTTACAATTT-TTATAAAAT
1 TTTATAAAATTTTACAATTTCTTA-AAAAT
13904600 TTTAT
1 TTTAT
13904605 GATTTTTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 3 0.10
29 26 0.90
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (29 bp):
TTTATAAAATTTTACAATTTCTTAAAAAT
Found at i:13904609 original size:19 final size:19
Alignment explanation
Indices: 13904563--13904611 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
13904553 TTATAATTTC
13904563 TTACGATTTTTATAAAATT
1 TTACGATTTTTATAAAATT
*
13904582 TTACAATTTTTATAAAATT
1 TTACGATTTTTATAAAATT
*
13904601 TTATGATTTTT
1 TTACGATTTTT
13904612 GTATTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (19 bp):
TTACGATTTTTATAAAATT
Found at i:13904626 original size:29 final size:28
Alignment explanation
Indices: 13904580--13904649 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
13904570 TTTTATAAAA
* *
13904580 TTTTACAATTTTT-ATAAAATTTTATGAT
1 TTTTATAATTTTTAATAAAATTTAAT-AT
*
13904608 TTTTGT-ATTTTTAATTAAAATTTAATAT
1 TTTTATAATTTTTAA-TAAAATTTAATAT
13904636 TTTTATAATTTTTA
1 TTTTATAATTTTTA
13904650 TTTTTTATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 6 0.17
28 12 0.34
29 17 0.49
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (28 bp):
TTTTATAATTTTTAATAAAATTTAATAT
Found at i:13904627 original size:48 final size:46
Alignment explanation
Indices: 13904542--13904643 Score: 120
Period size: 48 Copynumber: 2.2 Consensus size: 46
13904532 TTCTTACGCC
13904542 TTTATAAAATTTTATAATTTCTTACGATTTTTATAAAATTTTACA-ATT
1 TTTATAAAATTTTATAATTTCTTA-GATTTTTATAAAA-TTTA-ATATT
*
13904590 TTTATAAAATTTTATGATTT-TT-GTATTTTTAATTAAAATTTAATATT
1 TTTATAAAATTTTATAATTTCTTAG-ATTTTT-A-TAAAATTTAATATT
13904637 TTTATAA
1 TTTATAA
13904644 TTTTTATTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
45 1 0.02
46 7 0.14
47 17 0.35
48 24 0.49
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (46 bp):
TTTATAAAATTTTATAATTTCTTAGATTTTTATAAAATTTAATATT
Found at i:13907421 original size:53 final size:53
Alignment explanation
Indices: 13907350--13907483 Score: 198
Period size: 53 Copynumber: 2.5 Consensus size: 53
13907340 TCATACTGAA
* *
13907350 GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTATACCGAT
1 GCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
* * *
13907403 GCCATAGTCCAGCTATGGTCTTATACGGAGTCACATTATCACATTGCACCGAT
1 GCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
*
13907456 GCCATAGCCCAGCTATGGTCTTAAACGG
1 GCCATAGCCCAGCTATGGTCTTATACGG
13907484 GCGCACTTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 1 0.01
53 72 0.99
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (53 bp):
GCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
Found at i:13912921 original size:53 final size:53
Alignment explanation
Indices: 13912857--13912990 Score: 198
Period size: 53 Copynumber: 2.5 Consensus size: 53
13912847 TCATATTGAA
* *
13912857 GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTATACCGAT
1 GCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
* * *
13912910 GCCATAGCCCAGCTATGGTCTTATATGGAGTCACATTATCACATTGCACCGAT
1 GCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
*
13912963 GCCATAGCCCAGCTATGGTCTTAAACGG
1 GCCATAGCCCAGCTATGGTCTTATACGG
13912991 GCGCACTTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 1 0.01
53 72 0.99
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (53 bp):
GCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTACACCGAT
Found at i:13916250 original size:3 final size:3
Alignment explanation
Indices: 13916236--13916286 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
13916226 GACAATAAAG
*
13916236 AAT AAT AGT AAT AAT AAT -AT AGAT AAT AAT -AT ATAT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT AAT
13916280 AAT AAT A
1 AAT AAT A
13916287 GTTAGAGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
2 6 0.15
3 29 0.71
4 6 0.15
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:13916499 original size:3 final size:3
Alignment explanation
Indices: 13916491--13916599 Score: 64
Period size: 3 Copynumber: 36.3 Consensus size: 3
13916481 TATAAATATG
* * * *
13916491 ATA ATA ATA ATA ATG ATA ATG ATA ATA ATA AT- ATA GTA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
13916538 AAA ATA A-A ATTA ATA GTA A-A TTG ATA ATA ATA AT- GTA CATTA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA ATA
*
13916583 ACA ATA ATA ATA TATA A
1 ATA ATA ATA ATA -ATA A
13916600 AGGATAGGAA
Statistics
Matches: 80, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
2 6 0.08
3 66 0.82
4 6 0.08
5 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:13916872 original size:36 final size:33
Alignment explanation
Indices: 13916827--13916893 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 33
13916817 GATATGAAAA
*
13916827 ATAAAAATAAAAATGATATAGTATTAAAATATATGC
1 ATAAAAATAAAAAT-ACA-A-TATTAAAATATATGC
*
13916863 ATAACAATAAAAATACAATATTAAAATATAT
1 ATAAAAATAAAAATACAATATTAAAATATAT
13916894 ATACGAGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 13 0.45
34 1 0.03
35 2 0.07
36 13 0.45
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (33 bp):
ATAAAAATAAAAATACAATATTAAAATATATGC
Found at i:13916910 original size:35 final size:32
Alignment explanation
Indices: 13916848--13916961 Score: 97
Period size: 33 Copynumber: 3.3 Consensus size: 32
13916838 AATGATATAG
*
13916848 TATTAAAATATATGCATA-ACAATAAAAATACAA
1 TATTAAAATATAT--ATACATAATAAAAATACAA
**
13916881 TATTAAAATATATATACGAGTAATAAAAAATGTATCCG
1 TATTAAAATATATATAC-A-TAAT-AAAAA--TA-CAA
*
13916919 TATTAAAA-ATATATACATAATAAAAATATAA
1 TATTAAAATATATATACATAATAAAAATACAA
13916950 TATTTAAAATAT
1 TA-TTAAAATAT
13916962 TTACACAGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
31 5 0.08
32 8 0.12
33 16 0.24
34 8 0.12
35 9 0.14
36 1 0.02
37 10 0.15
38 9 0.14
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.32
Consensus pattern (32 bp):
TATTAAAATATATATACATAATAAAAATACAA
Found at i:13916942 original size:17 final size:17
Alignment explanation
Indices: 13916852--13916948 Score: 63
Period size: 17 Copynumber: 5.5 Consensus size: 17
13916842 ATATAGTATT
* *
13916852 AAAATATATGCATAACA
1 AAAATATATACATAATA
*
13916869 ATAAA-A-ATACAATATTA
1 A-AAATATATAC-ATAATA
13916886 AAATATATATACGAGTAATAA
1 AAA-ATATATAC-A-TAAT-A
* * * *
13916907 AAAATGTATCCGTATTA
1 AAAATATATACATAATA
13916924 AAAATATATACATAATA
1 AAAATATATACATAATA
13916941 AAAATATA
1 AAAATATA
13916949 ATATTTAAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
16 5 0.08
17 30 0.50
18 7 0.12
19 5 0.08
20 9 0.15
21 4 0.07
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (17 bp):
AAAATATATACATAATA
Found at i:13917091 original size:14 final size:14
Alignment explanation
Indices: 13917074--13917115 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
13917064 ACATAACATA
13917074 AATATCATATATAT
1 AATATCATATATAT
*
13917088 AATATC-TAAATAT
1 AATATCATATATAT
13917101 ACATA-CATATATAT
1 A-ATATCATATATAT
13917115 A
1 A
13917116 GTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (14 bp):
AATATCATATATAT
Found at i:13917280 original size:15 final size:16
Alignment explanation
Indices: 13917255--13917285 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
13917245 TTAATAATAC
13917255 TATATAATATATATAA
1 TATATAATATATATAA
13917271 TATA-AATATATATAA
1 TATATAATATATATAA
13917286 GTATGACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATATAATATATATAA
Found at i:13918582 original size:44 final size:44
Alignment explanation
Indices: 13918519--13919158 Score: 445
Period size: 44 Copynumber: 14.7 Consensus size: 44
13918509 AATTTTCAGC
* *
13918519 CTGTTACCCTACTGCTTAGGGTTTTAAGGTCCATCACCTTCAAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* * * * * * **
13918563 CTGTTTCCCTACTGCTTAGGGGGTTAAGAT-CTTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCAT-CAACTTCAAT
* * ** *
13918607 CTGTTACCCTACTGCTTAGGGTTTTAAGGCCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* * * * * * **
13918651 CTGTTTCCCTACTGCTTAAGGGG-TGAAGAT-CTTGTAAATTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTTAAGGTCCAT-CAACTTCAAT
* *
13918695 CTGTTACCCTACTGCTTAGGGTTTTAAGG-CCTATCACCTTCAAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCC-ATCAACTTCAAT
* * * ** ** * * *
13918739 CTATTTCCCTACTGCTTAGGGGGTTAATATCTGT-AAATCCAAC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
** *
13918782 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCTCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* * ** * *
13918826 CTGTTTCCCTACTGCTTAGGAGG-TTAAGATCTGT-AAATTCAAC
1 CTGTTACCCTACTGCTTAGG-GGTTTAAGGTCCATCAACTTCAAT
* * ** *
13918869 CTGTTACCTTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* * * ** * *
13918913 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
** *
13918956 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* * * ** * *
13919000 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* ** **
13919043 CTGTTACCCTACTGCCTAGGGGTTTAAGGTCCATCGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
* * * * ** * **
13919087 CTGTTTCACTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
13919130 CTGTTACCCTACTGCTTAGGGGTTTAAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGG
13919159 CTTGTGAATT
Statistics
Matches: 429, Mismatches: 153, Indels: 29
0.70 0.25 0.05
Matches are distributed among these distances:
42 2 0.00
43 161 0.38
44 256 0.60
45 10 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCAACTTCAAT
Done.