Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 37 of 318
Found at i:13918822 original size:87 final size:87
Alignment explanation
Indices: 13918513--13919158 Score: 1033
Period size: 87 Copynumber: 7.4 Consensus size: 87
13918503 ATCTAGAATT
* * * *
13918513 TTCAGCCTGTTACCCTACTGCTTAGGGTTTTAAGGTCCATCACCTTCAATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
13918578 TTAGGGGGTTAAGATCTTGTAAA
66 TTAGGGGGTTAAGATC-TGTAAA
* * *
13918601 TTCAGCCTGTTACCCTACTGCTTAGGGTTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
* *
13918666 TTAAGGGGTGAAGATCTTGTAAA
66 TTAGGGGGTTAAGATC-TGTAAA
* * * * *
13918689 TTCAGCCTGTTACCCTACTGCTTAGGGTTTTAAGG-CCTATCACCTTCAATCTATTTCCCTACTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCC-ATCGCCTTCGATCTGTTTCCCTACTG
*
13918753 CTTAGGGGGTTAATATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* *
13918776 TCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCTCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
*
13918841 TTAGGAGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
13918863 TTCAACCTGTTACCTTACTGCTTAAGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
13918928 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
13918950 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
13919015 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * *
13919037 TTCAACCTGTTACCCTACTGCCTAGGGGTTTAAGGTCCATCGTCTTTGATCTGTTTCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
13919102 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
*
13919124 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
13919159 CTTGTGAATT
Statistics
Matches: 524, Mismatches: 32, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
87 367 0.70
88 157 0.30
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:13919335 original size:64 final size:64
Alignment explanation
Indices: 13919234--13919357 Score: 185
Period size: 64 Copynumber: 1.9 Consensus size: 64
13919224 GTAACTATGT
* *
13919234 TTATGCCAAATAATTAGGACGCTATGATTGAAATGAATCAAATGATCCTAACTAAATGTGATGC
1 TTATGCCAAATAACTAGGACGCTATGATCGAAATGAATCAAATGATCCTAACTAAATGTGATGC
* * * * *
13919298 TTATGTCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTG
1 TTATGCCAAATAACTAGGACGCTATGATCGAAATGAATCAAATGATCCTAACTAAATGTG
13919358 TCACGAATGA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (64 bp):
TTATGCCAAATAACTAGGACGCTATGATCGAAATGAATCAAATGATCCTAACTAAATGTGATGC
Found at i:13924869 original size:39 final size:39
Alignment explanation
Indices: 13924786--13924861 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
13924776 AGCTCAAAGT
* * *
13924786 CTAATTGAAGCACATAAGTGCTAGACGGGAGCCCGAACA
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAACA
13924825 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAA
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAA
13924862 GGCTAACTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.14
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAACA
Found at i:13927676 original size:25 final size:25
Alignment explanation
Indices: 13927623--13927676 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
13927613 AAAATTTATA
* *
13927623 TGATAGGAAAATCTTATGAAAATAT
1 TGATAGGAAAATCTTATCAAAATAG
* **
13927648 TGATAGGAAAATTTTATCAATTTAG
1 TGATAGGAAAATCTTATCAAAATAG
13927673 TGAT
1 TGAT
13927677 TAGTTAGAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.37
Consensus pattern (25 bp):
TGATAGGAAAATCTTATCAAAATAG
Found at i:13936550 original size:5 final size:5
Alignment explanation
Indices: 13936540--13936567 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
13936530 TGCACTACCT
13936540 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
13936568 TTTATTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:13949024 original size:18 final size:17
Alignment explanation
Indices: 13948997--13949030 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
13948987 ATTTTTCAAG
13948997 TTTTAAAATTTTGAATT
1 TTTTAAAATTTTGAATT
13949014 TTTTGAAAATTTTGAAT
1 TTTT-AAAATTTTGAAT
13949031 ATGGACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTAAAATTTTGAATT
Found at i:13951298 original size:19 final size:21
Alignment explanation
Indices: 13951271--13951313 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
13951261 TTTAATCTGA
13951271 AAAAAATT-AAATTTAA-ATG
1 AAAAAATTAAAATTTAAGATG
*
13951290 AAAATATTAAAATTTAAGATG
1 AAAAAATTAAAATTTAAGATG
13951311 AAA
1 AAA
13951314 TTGTTGATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 8 0.38
21 6 0.29
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAAAATTAAAATTTAAGATG
Found at i:13953406 original size:17 final size:17
Alignment explanation
Indices: 13953376--13953417 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
13953366 GTGAGATTAT
*
13953376 AAAATATAACAATAATTA
1 AAAAAATAACAATAA-TA
*
13953394 AAAGAATAA-AATAATA
1 AAAAAATAACAATAATA
13953410 AAAAAATA
1 AAAAAATA
13953418 TAAAAAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 9 0.43
17 5 0.24
18 7 0.33
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAAAATAACAATAATA
Found at i:13953420 original size:18 final size:18
Alignment explanation
Indices: 13953376--13953422 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
13953366 GTGAGATTAT
*
13953376 AAAATATAACAATAATTAA
1 AAAATATAA-AATAATAAA
*
13953395 AAGA-ATAAAATAATAAA
1 AAAATATAAAATAATAAA
13953412 AAAATATAAAA
1 AAAATATAAAA
13953423 AAACTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 11 0.46
18 10 0.42
19 3 0.12
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAATATAAAATAATAAA
Found at i:13954453 original size:2 final size:2
Alignment explanation
Indices: 13954446--13954470 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13954436 TAAAGAGAAA
13954446 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
13954471 AAAGTGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:13960670 original size:22 final size:21
Alignment explanation
Indices: 13960645--13960703 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
13960635 AAATAACAGT
13960645 AAAATAACGAGAAAATAGAAAG
1 AAAATAAC-AGAAAATAGAAAG
* * *
13960667 AAAACAACAGCAAAATAGTAGG
1 AAAATAACAG-AAAATAGAAAG
13960689 AAAATAACAAGAAAA
1 AAAATAAC-AGAAAA
13960704 CAACTGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.68, C:0.08, G:0.15, T:0.08
Consensus pattern (21 bp):
AAAATAACAGAAAATAGAAAG
Found at i:13965409 original size:30 final size:30
Alignment explanation
Indices: 13965373--13965485 Score: 199
Period size: 30 Copynumber: 3.8 Consensus size: 30
13965363 CAATATCTCA
13965373 ATACCCATATCTTTGACTTTCCAATATTTG
1 ATACCCATATCTTTGACTTTCCAATATTTG
13965403 ATACCCATATCTTTGACTTTCCAATATTTG
1 ATACCCATATCTTTGACTTTCCAATATTTG
* *
13965433 ATACCCATATCTTTGACTTTCTATTATTTG
1 ATACCCATATCTTTGACTTTCCAATATTTG
*
13965463 ATACCCATATCTTTGATTTTCCA
1 ATACCCATATCTTTGACTTTCCA
13965486 TAAATATGGA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 79 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.45
Consensus pattern (30 bp):
ATACCCATATCTTTGACTTTCCAATATTTG
Found at i:13965417 original size:15 final size:15
Alignment explanation
Indices: 13965373--13965479 Score: 76
Period size: 15 Copynumber: 7.1 Consensus size: 15
13965363 CAATATCTCA
13965373 ATACCCATATCTTTG
1 ATACCCATATCTTTG
** *
13965388 ACTTTCCA-ATATTTG
1 A-TACCCATATCTTTG
13965403 ATACCCATATCTTTG
1 ATACCCATATCTTTG
** *
13965418 ACTTTCCA-ATATTTG
1 A-TACCCATATCTTTG
13965433 ATACCCATATCTTTG
1 ATACCCATATCTTTG
** * *
13965448 ACTTTCTAT-TATTTG
1 A-TACCCATATCTTTG
13965463 ATACCCATATCTTTG
1 ATACCCATATCTTTG
13965478 AT
1 AT
13965480 TTTCCATAAA
Statistics
Matches: 66, Mismatches: 20, Indels: 12
0.67 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 42 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.45
Consensus pattern (15 bp):
ATACCCATATCTTTG
Found at i:13970101 original size:30 final size:30
Alignment explanation
Indices: 13970055--13970148 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
13970045 TTTTATTATG
*
13970055 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
13970086 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
13970116 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
13970146 CCA
1 CCA
13970149 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:13970110 original size:15 final size:15
Alignment explanation
Indices: 13970065--13970142 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
13970055 CCAATATCTC
13970065 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
13970080 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
13970095 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
13970110 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
13970125 GATACCCATATCTTT
1 GATACCCATATCTTT
13970140 GAT
1 GAT
13970143 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:13974573 original size:32 final size:32
Alignment explanation
Indices: 13974534--13974601 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
13974524 TCTGAAAAGT
13974534 AAAACAAAAATGAAAAGACATAAAATAAAATA
1 AAAACAAAAATGAAAAGACATAAAATAAAATA
13974566 AAAACAAAAATGAAAAGACATAAAATAAAATA
1 AAAACAAAAATGAAAAGACATAAAATAAAATA
13974598 AAAA
1 AAAA
13974602 AAGGAGGCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (32 bp):
AAAACAAAAATGAAAAGACATAAAATAAAATA
Found at i:13982460 original size:11 final size:11
Alignment explanation
Indices: 13982444--13982491 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
13982434 CTAAATAAAA
13982444 TAATAAAATAT
1 TAATAAAATAT
13982455 TAAT-AAATAT
1 TAATAAAATAT
* *
13982465 CTTATTAAATAT
1 -TAATAAAATAT
*
13982477 TAATAAAATAA
1 TAATAAAATAT
13982488 TAAT
1 TAAT
13982492 TTTCTAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 6 0.19
11 19 0.61
12 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:13982489 original size:30 final size:30
Alignment explanation
Indices: 13982455--13982516 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
13982445 AATAAAATAT
*
13982455 TAATAAATATCTTATTAAAT-ATTAATAAAA
1 TAATAAATATCTAATTAAATAATT-ATAAAA
* *
13982485 TAATAATTTTCTAATTAAATAATTATAAAA
1 TAATAAATATCTAATTAAATAATTATAAAA
13982515 TA
1 TA
13982517 TCATCAACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 25 0.89
31 3 0.11
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
TAATAAATATCTAATTAAATAATTATAAAA
Found at i:13983459 original size:15 final size:15
Alignment explanation
Indices: 13983439--13983506 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 15
13983429 ATACTATAAA
13983439 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
13983454 ATATTTATAACTGTAAT
1 ATATTTATTA-T-TAAT
* *
13983471 AAACATTTATTATTAAA
1 --ATATTTATTATTAAT
*
13983488 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
13983501 ATATTT
1 ATATTT
13983507 TCAATAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 11 0.26
16 1 0.02
17 7 0.17
18 1 0.02
19 8 0.19
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:13983460 original size:31 final size:34
Alignment explanation
Indices: 13983425--13983492 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
13983415 ATATTTTAAC
* *
13983425 ATTTAT-ACTAT-A-AAATATTTATTATTAATAT
1 ATTTATAACTATAATAAACATTTATTATTAAAAT
*
13983456 ATTTATAACTGTAATAAACATTTATTATTAAAAT
1 ATTTATAACTATAATAAACATTTATTATTAAAAT
13983490 ATT
1 ATT
13983493 AATATTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 6 0.19
32 4 0.13
33 1 0.03
34 20 0.65
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (34 bp):
ATTTATAACTATAATAAACATTTATTATTAAAAT
Found at i:13983556 original size:16 final size:16
Alignment explanation
Indices: 13983525--13983561 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
13983515 ATGTAAATAA
13983525 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
13983541 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
13983557 TATTA
1 TATTA
13983562 AATAAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:13983806 original size:42 final size:43
Alignment explanation
Indices: 13983760--13983847 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 43
13983750 ATTTTAAATA
** * * *
13983760 AAAAATAATTTATTTTATTTTTACCTATAAGTTA-TTTATAAG
1 AAAAATAATTTATTTTACATTAACCTATAAATTATTTTACAAG
13983802 AAAAATAATTTATTTTACATTAACCTATAAATTATTTTACAAG
1 AAAAATAATTTATTTTACATTAACCTATAAATTATTTTACAAG
13983845 AAA
1 AAA
13983848 TAAATACTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 30 0.75
43 10 0.25
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (43 bp):
AAAAATAATTTATTTTACATTAACCTATAAATTATTTTACAAG
Found at i:13989127 original size:24 final size:24
Alignment explanation
Indices: 13989085--13989131 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
13989075 ATATAAGATA
* *
13989085 AAATTAATTTATTTAATAATAGAG
1 AAATTAATTTAATCAATAATAGAG
*
13989109 AAATTAATTTAATCCATAATAGA
1 AAATTAATTTAATCAATAATAGA
13989132 ATCATCTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATTAATTTAATCAATAATAGAG
Found at i:13993761 original size:18 final size:18
Alignment explanation
Indices: 13993738--13993830 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
13993728 CCCAACTACT
*
13993738 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
13993756 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
13993774 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
13993792 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
13993810 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
13993828 GTA
1 GTA
13993831 AACGGTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:13993790 original size:36 final size:36
Alignment explanation
Indices: 13993738--13993830 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
13993728 CCCAACTACT
*
13993738 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
13993774 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
13993810 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
13993831 AACGGTCGTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:13994475 original size:24 final size:24
Alignment explanation
Indices: 13994437--13994491 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
13994427 TTTAGAATCC
* * *
13994437 AATAAAAAAACATTA-TTTTTAGA
1 AATAAAAAAAAATTACCTTTAAGA
13994460 AATAAAAATAAAATTACCTTTAAGA
1 AATAAAAA-AAAATTACCTTTAAGA
13994485 AATAAAA
1 AATAAAA
13994492 TATCATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 8 0.30
24 6 0.22
25 13 0.48
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (24 bp):
AATAAAAAAAAATTACCTTTAAGA
Found at i:13997702 original size:32 final size:32
Alignment explanation
Indices: 13997661--13997726 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
13997651 GTATATTTAC
13997661 AATATTACATATGTATTGTTTTCATCTTAATT
1 AATATTACATATGTATTGTTTTCATCTTAATT
13997693 AATATTACATATGTATTGTTTTCATCTTAATT
1 AATATTACATATGTATTGTTTTCATCTTAATT
13997725 AA
1 AA
13997727 CTTATAATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (32 bp):
AATATTACATATGTATTGTTTTCATCTTAATT
Found at i:14020684 original size:46 final size:46
Alignment explanation
Indices: 14020631--14020725 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
14020621 AAATCCATTT
14020631 ACTTTTACCCAAATCATGATTTCGAAACAGGCTATAACATAAATCA
1 ACTTTTACCCAAATCATGATTTCGAAACAGGCTATAACATAAATCA
*
14020677 ACTTTTACCCAAATCATGATTTCTAAACAGGCTATAACATAAATCA
1 ACTTTTACCCAAATCATGATTTCGAAACAGGCTATAACATAAATCA
14020723 ACT
1 ACT
14020726 GTGAAATCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (46 bp):
ACTTTTACCCAAATCATGATTTCGAAACAGGCTATAACATAAATCA
Found at i:14037963 original size:27 final size:29
Alignment explanation
Indices: 14037926--14037979 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
14037916 TGAATGCAAT
*
14037926 TAAAATAGTATATTTTTATA-TTAAAATA
1 TAAAATAGTATATTTTTAAAGTTAAAATA
*
14037954 TAAAA-AGTATTTTTTTAAAGTTAAAA
1 TAAAATAGTATATTTTTAAAGTTAAAA
14037980 GTAAAATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (29 bp):
TAAAATAGTATATTTTTAAAGTTAAAATA
Found at i:14041021 original size:27 final size:27
Alignment explanation
Indices: 14040983--14041037 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
14040973 ACCAAACCGC
*
14040983 TAAACTTAGAACCTCAAATTACCCAAT
1 TAAACTTAGAACATCAAATTACCCAAT
14041010 TAAACTTAGAACATCAAATTACCCAAT
1 TAAACTTAGAACATCAAATTACCCAAT
14041037 T
1 T
14041038 TTTCAAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.24, G:0.04, T:0.27
Consensus pattern (27 bp):
TAAACTTAGAACATCAAATTACCCAAT
Found at i:14044386 original size:46 final size:44
Alignment explanation
Indices: 14044283--14044390 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
14044273 TGTCTTTGAC
** * * * *
14044283 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATATATAAT
*
14044327 ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATA--TATAAT
14044373 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
14044391 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATATATAAT
Found at i:14051768 original size:46 final size:44
Alignment explanation
Indices: 14051665--14051772 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
14051655 TGTCTTTGAC
** * * * *
14051665 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATATATAAT
*
14051709 ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATA--TATAAT
14051755 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
14051773 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGCCTCCAAAGCCATATATAAT
Found at i:14055133 original size:20 final size:20
Alignment explanation
Indices: 14055110--14055151 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14055100 ATATTATATA
*
14055110 AATAAATTTAATAAAAAATT
1 AATAAAGTTAATAAAAAATT
* *
14055130 AATAAAGTTAATGAACAATT
1 AATAAAGTTAATAAAAAATT
14055150 AA
1 AA
14055152 ACTTAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AATAAAGTTAATAAAAAATT
Found at i:14058459 original size:34 final size:34
Alignment explanation
Indices: 14058416--14058484 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
14058406 GGTGTAGAAG
* *
14058416 TTAGCATTTGACCCATGTTTTCACTGTTATGGTC
1 TTAGCATTTGACCCATGTTTTCACTCTTAAGGTC
14058450 TTAGCATTTGACCCATGTTTTCACTCTTAAGGTC
1 TTAGCATTTGACCCATGTTTTCACTCTTAAGGTC
14058484 T
1 T
14058485 AGAATAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (34 bp):
TTAGCATTTGACCCATGTTTTCACTCTTAAGGTC
Found at i:14064598 original size:24 final size:24
Alignment explanation
Indices: 14064546--14064601 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
14064536 GGTGCCTATC
*
14064546 ATAAATGT-TATAATAAGAAATCA
1 ATAAATATATATAATAAGAAATCA
14064569 ATAAATATATATATATAA-AAACTCA
1 ATAAATATATATA-ATAAGAAA-TCA
14064594 A-AAATATA
1 ATAAATATA
14064602 ACTACTTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 7 0.24
24 14 0.48
25 8 0.28
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (24 bp):
ATAAATATATATAATAAGAAATCA
Found at i:14064823 original size:13 final size:13
Alignment explanation
Indices: 14064805--14064831 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14064795 AGATTTATAC
14064805 ACCAACATTTTGA
1 ACCAACATTTTGA
14064818 ACCAACATTTTGA
1 ACCAACATTTTGA
14064831 A
1 A
14064832 GAAAAACCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (13 bp):
ACCAACATTTTGA
Found at i:14066745 original size:30 final size:30
Alignment explanation
Indices: 14066709--14066768 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
14066699 AATTAGTAAA
*
14066709 GATAAAATTATACTTTAATCCCTTAAAAAT
1 GATAAAATTATAATTTAATCCCTTAAAAAT
* *
14066739 GATAAAATTCTAATTTAATCCTTTAAAAAT
1 GATAAAATTATAATTTAATCCCTTAAAAAT
14066769 TACATTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (30 bp):
GATAAAATTATAATTTAATCCCTTAAAAAT
Found at i:14066807 original size:22 final size:22
Alignment explanation
Indices: 14066764--14066807 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14066754 TAATCCTTTA
* *
14066764 AAAATTACATTTTTATTATAAC
1 AAAATTACAATTTAATTATAAC
*
14066786 AAAATTACAATTTAATTTTAAC
1 AAAATTACAATTTAATTATAAC
14066808 CCCTAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTACAATTTAATTATAAC
Found at i:14074337 original size:10 final size:11
Alignment explanation
Indices: 14074321--14074350 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
14074311 TAATTCTCAA
14074321 AAAAAGAAAAG
1 AAAAAGAAAAG
14074332 -AAAAGAAAAG
1 AAAAAGAAAAG
14074342 AAAAAGAAA
1 AAAAAGAAA
14074351 GTGGTTTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:14081871 original size:29 final size:29
Alignment explanation
Indices: 14081838--14081914 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
14081828 ATAATATTAT
14081838 TTAAATAATTATAATTCTTTTTTAAAAAA
1 TTAAATAATTATAATTCTTTTTTAAAAAA
14081867 TTAAATAATTATAATTCTTTTTTAAAAAA
1 TTAAATAATTATAATTCTTTTTTAAAAAA
*
14081896 CTAAATAA-TATAA-TCTTTT
1 TTAAATAATTATAATTCTTTT
14081915 AATTAATTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 6 0.13
28 5 0.11
29 36 0.77
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAATAATTATAATTCTTTTTTAAAAAA
Found at i:14091986 original size:51 final size:51
Alignment explanation
Indices: 14091928--14092039 Score: 199
Period size: 51 Copynumber: 2.2 Consensus size: 51
14091918 TAAATAACGA
14091928 ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
1 ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
*
14091979 ATCATAATTTATGTATAATTTTAATATATGCCTATTTTTATATTTCATTTT
1 ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
*
14092030 AT-AAAATTTA
1 ATCATAATTTA
14092040 CCCCTTTGTT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
50 7 0.12
51 52 0.88
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (51 bp):
ATCATAATTTATGTATAATTTTAATATATGCCCATTTTTATATTTCATTTT
Found at i:14095542 original size:18 final size:18
Alignment explanation
Indices: 14095519--14095556 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14095509 TATGAATTAT
14095519 ATATTTTTTAAATTTTTA
1 ATATTTTTTAAATTTTTA
14095537 ATATTTTTTAAATTTTTA
1 ATATTTTTTAAATTTTTA
14095555 AT
1 AT
14095557 CTGTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
ATATTTTTTAAATTTTTA
Found at i:14095553 original size:9 final size:9
Alignment explanation
Indices: 14095521--14095553 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
14095511 TGAATTATAT
14095521 ATTTTTTAA
1 ATTTTTTAA
14095530 A-TTTTTAA
1 ATTTTTTAA
14095538 TATTTTTTAA
1 -ATTTTTTAA
14095548 ATTTTT
1 ATTTTT
14095554 AATCTGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 7 0.32
9 8 0.36
10 7 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:14095779 original size:31 final size:31
Alignment explanation
Indices: 14095733--14095813 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 31
14095723 ACAAACCCAT
*
14095733 TTTAACGTTAGAGTGACTAAAATTAAGAACTTA
1 TTTAACG--AGAGTGACTAAAATTAACAACTTA
* *
14095766 TTTAACGAGAGTGACTAAAATTGACAATTTA
1 TTTAACGAGAGTGACTAAAATTAACAACTTA
*
14095797 TCTAAC-ATGAGTGACTA
1 TTTAACGA-GAGTGACTA
14095814 CAATAATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
30 1 0.02
31 35 0.81
33 7 0.16
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (31 bp):
TTTAACGAGAGTGACTAAAATTAACAACTTA
Found at i:14100260 original size:23 final size:23
Alignment explanation
Indices: 14100228--14100274 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
14100218 TTAAAACTAC
*
14100228 TTCTTGTTTAGATTAAATTAGAG
1 TTCTTATTTAGATTAAATTAGAG
14100251 TTCTTATTTAGATTAAATTAGAG
1 TTCTTATTTAGATTAAATTAGAG
14100274 T
1 T
14100275 CCTAGTATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.49
Consensus pattern (23 bp):
TTCTTATTTAGATTAAATTAGAG
Found at i:14101531 original size:24 final size:24
Alignment explanation
Indices: 14101501--14101691 Score: 93
Period size: 25 Copynumber: 7.7 Consensus size: 24
14101491 CTGTATAACA
14101501 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCATAATCG
* ** *
14101525 GGAAGCTCTTGCGAGCCAATAA-CA
1 GGAAGCTCATAAGAGCC-ATAATCG
* *
14101549 GGTAGCTCCA-AAGAGCCATTAATCA
1 GGAAGCT-CATAAGAGCCA-TAATCG
*** *
14101574 GGAAGCTCCGGATAGCCATATATCG
1 GGAAGCTCATAAGAGCCATA-ATCG
* * **
14101599 GGAAGTTCA-AGCGAGCCATTAATTA
1 GGAAGCTCATA-AGAGCCA-TAATCG
* *
14101624 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCA-TAAGAGCC-ATAATCG
* *
14101650 GGAAGCTCACAAAGAGCCCTATATCG
1 GGAAGCTCA-TAAGAGCCATA-ATCG
14101676 GGACA-CTCATAAGAGC
1 GGA-AGCTCATAAGAGC
14101692 TGTAGTGTGT
Statistics
Matches: 127, Mismatches: 27, Indels: 25
0.71 0.15 0.14
Matches are distributed among these distances:
23 1 0.01
24 32 0.25
25 52 0.41
26 40 0.31
27 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATAATCG
Found at i:14101580 original size:25 final size:25
Alignment explanation
Indices: 14101499--14101667 Score: 114
Period size: 25 Copynumber: 6.8 Consensus size: 25
14101489 GGCTGTATAA
14101499 CAGGAAGCT-CATAAGAGCCA-TAAT
1 CAGGAAGCTCCA-AAGAGCCATTAAT
* **** *
14101523 CGGGAAGCTCTTGCGAGCCAATAA-
1 CAGGAAGCTCCAAAGAGCCATTAAT
*
14101547 CAGGTAGCTCCAAAGAGCCATTAAT
1 CAGGAAGCTCCAAAGAGCCATTAAT
** *
14101572 CAGGAAGCTCCGGATAGCCA-TATAT
1 CAGGAAGCTCCAAAGAGCCATTA-AT
* * *
14101597 CGGGAAG-TTCAAGCGAGCCATTAAT
1 CAGGAAGCTCCAA-AGAGCCATTAAT
* *
14101622 TAGGAAGCTCACAAAGAGCCTTTAAT
1 CAGGAAGCTC-CAAAGAGCCATTAAT
*
14101648 CGGGAAGCTCACAAAGAGCC
1 CAGGAAGCTC-CAAAGAGCC
14101668 CTATATCGGG
Statistics
Matches: 108, Mismatches: 29, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
24 35 0.32
25 39 0.36
26 31 0.29
27 3 0.03
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (25 bp):
CAGGAAGCTCCAAAGAGCCATTAAT
Found at i:14101654 original size:76 final size:73
Alignment explanation
Indices: 14101514--14101657 Score: 189
Period size: 76 Copynumber: 1.9 Consensus size: 73
14101504 AGCTCATAAG
** *
14101514 AGCCATAATCGGGAAGCTCTTGCGAGCCAATAACAGGTAGCTCCAAAGAGCCATTAATCAGGAAG
1 AGCCATAATCGGGAAGCTCAAGCGAGCCAATAACAGGAAGCTCCAAAGAGCCATTAATCAGGAAG
14101579 CTCCGGAT
66 CTCCGGAT
* * * * *
14101587 AGCCATATATCGGGAAGTTCAAGCGAGCCATTAATTAGGAAGCTCACAAAGAGCCTTTAATCGGG
1 AGCCATA-ATCGGGAAGCTCAAGCGAGCCAATAA-CAGGAAGCTC-CAAAGAGCCATTAATCAGG
14101652 AAGCTC
63 AAGCTC
14101658 ACAAAGAGCC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
73 7 0.12
74 22 0.37
75 8 0.13
76 23 0.38
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.19
Consensus pattern (73 bp):
AGCCATAATCGGGAAGCTCAAGCGAGCCAATAACAGGAAGCTCCAAAGAGCCATTAATCAGGAAG
CTCCGGAT
Found at i:14101684 original size:26 final size:26
Alignment explanation
Indices: 14101624--14101678 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
14101614 CCATTAATTA
*
14101624 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAGCCTATAATCG
14101650 GGAAGCTCACAAAGAGCCCTAT-ATCG
1 GGAAGCTCACAAAGAG-CCTATAATCG
14101676 GGA
1 GGA
14101679 CACTCATAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATAATCG
Found at i:14104414 original size:92 final size:93
Alignment explanation
Indices: 14104283--14104454 Score: 292
Period size: 92 Copynumber: 1.9 Consensus size: 93
14104273 CGCCCATAAG
* * *
14104283 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14104348 ACGAGCTCGGATGCCTAGTTATATCTCT
66 ACGAGCTCGGATGCCTAGTTATATCTCT
*
14104376 CGAACTCGGACT-AACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
14104440 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
14104455 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 62 0.84
93 12 0.16
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTATATCTCT
Found at i:14104450 original size:46 final size:46
Alignment explanation
Indices: 14104276--14104450 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
14104266 TGTAACCCGC
* * * *
14104276 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
14104322 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-T
* ** *
14104367 -TATATCTCTCGAACTCGGACT-AACTCAACGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
14104414 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
14104451 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 12 0.11
46 68 0.64
47 12 0.11
48 7 0.07
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:14104469 original size:46 final size:45
Alignment explanation
Indices: 14104327--14104469 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 45
14104317 CGCATCCATA
* *
14104327 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ATATC-CT
* * *
14104376 --CGAACTCGGACT-AACTCAACGAGTTCGGACATTCGC---ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAATATCC-T
14104418 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AATATCCT
14104465 AGTGA
1 AGTGA
14104470 CATGTCACTT
Statistics
Matches: 75, Mismatches: 8, Indels: 25
0.69 0.07 0.23
Matches are distributed among these distances:
41 1 0.01
42 4 0.05
44 4 0.05
45 11 0.15
46 36 0.48
47 12 0.16
48 7 0.09
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCCT
Found at i:14110749 original size:14 final size:15
Alignment explanation
Indices: 14110732--14110760 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14110722 GAGTATGGTA
14110732 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
14110746 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
14110761 TAGTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:14111690 original size:31 final size:30
Alignment explanation
Indices: 14111633--14111697 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 30
14111623 TTGTAAATTT
*
14111633 TATTTTCAAAAAAATTGGTTTATTTTTATAA
1 TATTTTCAAAAAAATTGCTTTATTTTT-TAA
* *
14111664 TATTTTTAAAAAAA-TGACTTTTTTTTTTAA
1 TATTTTCAAAAAAATTG-CTTTATTTTTTAA
14111694 -ATTT
1 TATTT
14111698 AGTCTAAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 4 0.13
30 5 0.17
31 21 0.70
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (30 bp):
TATTTTCAAAAAAATTGCTTTATTTTTTAA
Found at i:14116324 original size:103 final size:103
Alignment explanation
Indices: 14116138--14116340 Score: 334
Period size: 103 Copynumber: 2.0 Consensus size: 103
14116128 AGTGTTCTTT
* * * * *
14116138 GATATTCCCAAGCTAACTCAGTCTCTCTGATCGAGGGTTGATCTTTCTGTGTTCTAACCTATCTG
1 GATACTCCCAAGATAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
14116203 AATTAAAACTGAACTATAATGCAACTATGCACACCTTC
66 AATTAAAACTGAACTATAATGCAACTATGCACACCTTC
14116241 GATACTCCCAAGATAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
1 GATACTCCCAAGATAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
* * *
14116306 AATTAAAACTGAAGTATAATGCAATTATGCCCACC
66 AATTAAAACTGAACTATAATGCAACTATGCACACC
14116341 AACGGACCTA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 92 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (103 bp):
GATACTCCCAAGATAACTCAGTCTCTCTGATCGAGGGTTGATCTTTATGAGTTCTAACCTATCAG
AATTAAAACTGAACTATAATGCAACTATGCACACCTTC
Found at i:14116358 original size:49 final size:50
Alignment explanation
Indices: 14116297--14116392 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
14116287 ATGAGTTCTA
* *
14116297 ACCTATCAGAATTAAAA-CTGAAGTATAATGCAATTATGCCCACCAACGG
1 ACCTATCAGAATTAAAACCTGAACTATAATGCAACTATGCCCACCAACGG
* *
14116346 ACCTATCTGAATTAAAACCTGAACTATCATGCAACTATGCCCACCAA
1 ACCTATCAGAATTAAAACCTGAACTATAATGCAACTATGCCCACCAA
14116393 TGGTACACCA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 16 0.38
50 26 0.62
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (50 bp):
ACCTATCAGAATTAAAACCTGAACTATAATGCAACTATGCCCACCAACGG
Found at i:14116579 original size:80 final size:79
Alignment explanation
Indices: 14116495--14116653 Score: 230
Period size: 80 Copynumber: 2.0 Consensus size: 79
14116485 AATCGAACTG
** *
14116495 GATAGAGTAAATGAGGGAT-TTGTTCTGCAAAAAACACTGACACGGATGTGAATGAATTATTTAT
1 GATAGAGTAAATGAGGG-TCTTGTTCTGCAAAAAACACTGACACAAATGTGAATGAATGA-TTAT
14116559 AAGACAAGTTCAATCT
64 AAGACAAGTTCAATCT
* * *
14116575 GATAGAGTAAATGAGGGTCTTGTTCTGCAAAAAGCATTGACACAAATGTGAATGAATGATTGTAA
1 GATAGAGTAAATGAGGGTCTTGTTCTGCAAAAAACACTGACACAAATGTGAATGAATGATTATAA
*
14116640 GCCAAGTTCAATCT
66 GACAAGTTCAATCT
14116654 TCAGTACAGT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
79 19 0.27
80 52 0.73
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (79 bp):
GATAGAGTAAATGAGGGTCTTGTTCTGCAAAAAACACTGACACAAATGTGAATGAATGATTATAA
GACAAGTTCAATCT
Found at i:14122956 original size:23 final size:24
Alignment explanation
Indices: 14122925--14122971 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
14122915 GATGTTTTTT
*
14122925 TATTATTATA-ACATATAATAGAAA
1 TATTATTATATA-ATATAACAGAAA
14122949 TATT-TTATATAATATAACAGAAA
1 TATTATTATATAATATAACAGAAA
14122972 GTGTTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (24 bp):
TATTATTATATAATATAACAGAAA
Found at i:14123831 original size:5 final size:6
Alignment explanation
Indices: 14123815--14123852 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
14123805 TTATTCTCTA
*
14123815 ATTTTT ATTTTT ATTTTT ATTTTT GTCTTTT -TTTTT AT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT AT
14123853 CATTTGAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 4 0.14
6 21 0.72
7 4 0.14
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (6 bp):
ATTTTT
Found at i:14128369 original size:21 final size:21
Alignment explanation
Indices: 14128345--14128386 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14128335 CAGGATTTGG
14128345 GTTAATTACACCATCTATACT
1 GTTAATTACACCATCTATACT
14128366 GTTAATTACACCATCTATACT
1 GTTAATTACACCATCTATACT
14128387 CGCACTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (21 bp):
GTTAATTACACCATCTATACT
Found at i:14135818 original size:27 final size:27
Alignment explanation
Indices: 14135780--14135843 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
14135770 TTTAATTATT
*
14135780 AAAATATTAAA-TATGTAAAAATTACA
1 AAAATATAAAATTATGTAAAAATTACA
* *
14135806 AATAATATAAAATTATTTAAAATTTACA
1 AA-AATATAAAATTATGTAAAAATTACA
*
14135834 CAAATATAAA
1 AAAATATAAA
14135844 TAAATCCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.06
27 16 0.50
28 14 0.44
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAATATAAAATTATGTAAAAATTACA
Found at i:14139979 original size:30 final size:30
Alignment explanation
Indices: 14139945--14140007 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14139935 ACTTATTTTA
*
14139945 TTGTTAATTTTGTTATTATTTGATAGACAT
1 TTGTTAATTTTGTTATTATTTGAGAGACAT
*
14139975 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTGAGAGACAT
14140005 TTG
1 TTG
14140008 CTTATTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTGAGAGACAT
Found at i:14140124 original size:18 final size:19
Alignment explanation
Indices: 14140089--14140129 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
14140079 AAAATATTTA
*
14140089 TTTTGATGTTTTTAATAT-
1 TTTTGATGTTTATAATATG
14140107 TTTTGATGTATTAT-ATATG
1 TTTTGATGT-TTATAATATG
14140126 TTTT
1 TTTT
14140130 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (19 bp):
TTTTGATGTTTATAATATG
Found at i:14147018 original size:15 final size:16
Alignment explanation
Indices: 14146998--14147031 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
14146988 TAAAATATAA
14146998 AAAAAAAAT-CAAAAT
1 AAAAAAAATACAAAAT
14147013 AAAAAAAATACCAAAAT
1 AAAAAAAATA-CAAAAT
14147030 AA
1 AA
14147032 TTTCCTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAAAAATACAAAAT
Found at i:14147018 original size:16 final size:17
Alignment explanation
Indices: 14146994--14147031 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14146984 TGACTAAAAT
* *
14146994 ATAAAAAAAAAATCAAA
1 ATAAAAAAAATACCAAA
14147011 ATAAAAAAAATACCAAA
1 ATAAAAAAAATACCAAA
14147028 ATAA
1 ATAA
14147032 TTTCCTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (17 bp):
ATAAAAAAAATACCAAA
Found at i:14148903 original size:14 final size:15
Alignment explanation
Indices: 14148861--14148911 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
14148851 GATCATCATC
14148861 TAATTAATAAAAATAT
1 TAATT-ATAAAAATAT
**
14148877 TAATTATCTAAAT-T
1 TAATTATAAAAATAT
14148891 TAATTATAGAAATATAT
1 TAATTATA-AAA-ATAT
14148908 TAAT
1 TAAT
14148912 ATTCTAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
14 8 0.29
15 8 0.29
16 7 0.25
17 5 0.18
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
TAATTATAAAAATAT
Found at i:14148909 original size:31 final size:30
Alignment explanation
Indices: 14148861--14148919 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
14148851 GATCATCATC
14148861 TAATTAATAAAAATATTAAT-TATCTAAATT
1 TAATTAATAAAAATATTAATAT-TCTAAATT
14148891 TAATT-ATAGAAATATATTAATATTCTAAA
1 TAATTAATA-AAA-ATATTAATATTCTAAA
14148920 ATATGCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 3 0.12
30 8 0.31
31 14 0.54
32 1 0.04
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (30 bp):
TAATTAATAAAAATATTAATATTCTAAATT
Found at i:14157177 original size:35 final size:34
Alignment explanation
Indices: 14157092--14157183 Score: 114
Period size: 36 Copynumber: 2.6 Consensus size: 34
14157082 CTCAATTAAC
*
14157092 AAGATGACCAAATAGTTTTTCAAACCAATCCATT
1 AAGATGACCAAATAATTTTTCAAACCAATCCATT
*
14157126 ATATAATGACTC-AATAATTTTTCAAACCAATCCAATT
1 A-A-GATGAC-CAAATAATTTTTCAAACCAATCC-ATT
*
14157163 AAGATGACCAAATAATCTTTC
1 AAGATGACCAAATAATTTTTC
14157184 CATCGTAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
34 2 0.04
35 16 0.33
36 26 0.53
37 5 0.10
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.32
Consensus pattern (34 bp):
AAGATGACCAAATAATTTTTCAAACCAATCCATT
Found at i:14161152 original size:51 final size:45
Alignment explanation
Indices: 14161040--14161146 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
14161030 GCAACGGTAG
14161040 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
* *
14161085 CAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAATC-GATAA
1 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTG-TAA
* *
14161130 CTGTAACGGTAACAGTA
1 CAGTAACAGTAACAGTA
14161147 ACAGTAACAG
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
44 1 0.02
45 56 0.98
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
Found at i:14163708 original size:21 final size:21
Alignment explanation
Indices: 14163679--14163719 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14163669 ATCTGCTCAA
* *
14163679 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
*
14163700 ACTCTACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
14163720 TTGCTCGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:14168718 original size:25 final size:24
Alignment explanation
Indices: 14168689--14168770 Score: 78
Period size: 25 Copynumber: 3.2 Consensus size: 24
14168679 TTAATTTAAT
14168689 TTAATTCATAATAATATATTTATAA
1 TTAATT-ATAATAATATATTTATAA
14168714 TTAATTAATTTAATAATATATTTTATAA
1 TTAATT-A--TAATAATATA-TTTATAA
14168742 TTAAATTAT-AT-ATATATTTACATAA
1 TT-AATTATAATAATATATTT--ATAA
14168767 TTAA
1 TTAA
14168771 AATCTAAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
23 3 0.06
24 7 0.14
25 15 0.30
26 1 0.02
27 10 0.20
28 10 0.20
29 4 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TTAATTATAATAATATATTTATAA
Found at i:14168742 original size:24 final size:25
Alignment explanation
Indices: 14168697--14168771 Score: 91
Period size: 24 Copynumber: 3.0 Consensus size: 25
14168687 ATTTAATTCA
*
14168697 TAATAATATATTTATAATTAATTAATT
1 TAATAATATATTTAT-A-TAATTAAAT
14168724 TAATAATATATTT-TATAATTAAAT
1 TAATAATATATTTATATAATTAAAT
*
14168748 T-ATATATATATTTACATAATTAAA
1 TAATA-ATATATTTATATAATTAAA
14168772 ATCTAAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
23 3 0.07
24 17 0.39
25 10 0.23
26 1 0.02
27 13 0.30
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (25 bp):
TAATAATATATTTATATAATTAAAT
Found at i:14168771 original size:25 final size:24
Alignment explanation
Indices: 14168697--14168771 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 24
14168687 ATTTAATTCA
14168697 TAATAATATATTT-ATAATTAATTAATT
1 TAATAATATATTTCATAATT-A--AA-T
*
14168724 TAATAATATATTTTATAATTAAAT
1 TAATAATATATTTCATAATTAAAT
14168748 T-ATATATATATTTACATAATTAAA
1 TAATA-ATATATTT-CATAATTAAA
14168772 ATCTAAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
23 3 0.07
24 10 0.23
25 11 0.25
27 14 0.32
28 6 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
TAATAATATATTTCATAATTAAAT
Found at i:14170008 original size:17 final size:17
Alignment explanation
Indices: 14169986--14170018 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14169976 ATTAGTTTGA
14169986 GAAAAA-TAATTTAATAG
1 GAAAAATTAA-TTAATAG
14170003 GAAAAATTAATTAATA
1 GAAAAATTAATTAATA
14170019 AATAAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (17 bp):
GAAAAATTAATTAATAG
Found at i:14176818 original size:2 final size:2
Alignment explanation
Indices: 14176811--14176839 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14176801 AGGCTTAAAC
14176811 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
14176840 GGGAGGGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14187921 original size:19 final size:19
Alignment explanation
Indices: 14187897--14187934 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14187887 CTCCTTTGAT
14187897 AAAGGAACACATTGAATCA
1 AAAGGAACACATTGAATCA
14187916 AAAGGAACACATTGAATCA
1 AAAGGAACACATTGAATCA
14187935 GTTTTTTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16
Consensus pattern (19 bp):
AAAGGAACACATTGAATCA
Found at i:14191533 original size:15 final size:15
Alignment explanation
Indices: 14191513--14191543 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14191503 CTATCATCTT
14191513 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
14191528 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
14191543 T
1 T
14191544 TACATCGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:14191577 original size:20 final size:20
Alignment explanation
Indices: 14191552--14191593 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
14191542 CTTACATCGG
*
14191552 TACAACGGTTTTGACTATAT
1 TACAACGGCTTTGACTATAT
*
14191572 TACAACTGCTTTGACTATAT
1 TACAACGGCTTTGACTATAT
14191592 TA
1 TA
14191594 ACTCTAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACGGCTTTGACTATAT
Found at i:14194730 original size:15 final size:15
Alignment explanation
Indices: 14194710--14194740 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14194700 CTATCATATT
14194710 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
14194725 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
14194740 T
1 T
14194741 TACATCGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:14199222 original size:40 final size:40
Alignment explanation
Indices: 14199177--14199489 Score: 283
Period size: 40 Copynumber: 7.7 Consensus size: 40
14199167 GTTTTAGTCT
*
14199177 GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCT
1 GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCC
* * * *
14199217 ACTCCACTACTGCTTAGGG-GAATAAGATCTGTGGTTCTG-TCT
1 GCTCCACTACTGCTTAGGGAG-ATAAGA-C--TGGATGTGATCC
* * * * * *
14199259 GCTCCACTATTGCTTGGGGAGATAAGACTTGAAGCGATCT
1 GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCC
* * *
14199299 GCTCCACTATTGCTTAGGGAGATAAGATCTGTGGTTTTG-TCC
1 GCTCCACTACTGCTTAGGGAGATAAGA-C--TGGATGTGATCC
* * *
14199341 GCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCC
1 GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCC
* *
14199381 GCTCCACTATTGCTTAGGGAGATAAGATCTGTGATTTTG-TCC
1 GCTCCACTACTGCTTAGGGAGATAAGA-CTG-GA-TGTGATCC
* * * **
14199423 GCTCCGCTACTACTTAGGGAGATAAGACTTGATACGATCC
1 GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCC
*
14199463 GCTCCACTATTGCTTAGGGAGATAAGA
1 GCTCCACTACTGCTTAGGGAGATAAGA
14199490 TCTGTGGTTT
Statistics
Matches: 221, Mismatches: 38, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
39 10 0.05
40 110 0.50
41 8 0.04
42 81 0.37
43 12 0.05
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
GCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCC
Found at i:14199261 original size:82 final size:82
Alignment explanation
Indices: 14199158--14199500 Score: 499
Period size: 82 Copynumber: 4.2 Consensus size: 82
14199148 CATGGGGATG
* * * * **
14199158 AGATTTGTGGTTTTAGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTACTCCA
1 AGATCTGTGGTTTT-GTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCA
*
14199223 CTACTGCTTAGGG-GAATA
65 CTATTGCTTAGGGAG-ATA
* * * * * *
14199241 AGATCTGTGGTTCTGTCTGCTCCACTATTGCTTGGGGAGATAAGACTTGAAGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCAC
14199306 TATTGCTTAGGGAGATA
66 TATTGCTTAGGGAGATA
*
14199323 AGATCTGTGGTTTTGTCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCAC
1 AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCAC
14199388 TATTGCTTAGGGAGATA
66 TATTGCTTAGGGAGATA
* * * *
14199405 AGATCTGTGATTTTGTCCGCTCCGCTACTACTTAGGGAGATAAGACTTGATACGATCCGCTCCAC
1 AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCAC
14199470 TATTGCTTAGGGAGATA
66 TATTGCTTAGGGAGATA
14199487 AGATCTGTGGTTTT
1 AGATCTGTGGTTTT
14199501 CACTCTATTC
Statistics
Matches: 239, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
82 226 0.95
83 13 0.05
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (82 bp):
AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCAC
TATTGCTTAGGGAGATA
Found at i:14199765 original size:44 final size:45
Alignment explanation
Indices: 14199661--14199994 Score: 268
Period size: 44 Copynumber: 7.6 Consensus size: 45
14199651 CAAATACAGG
* * * * *
14199661 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * *
14199706 GACAAGATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * *
14199749 GATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATAGATGAA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * * *
14199793 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGTA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * *
14199838 GACAAGATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
** * * *
14199881 GACCGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * *
14199925 GACAAGATCTGCTTTCTTCGGTCTACTTC-CTACCTAATACAAGAA
1 GACAAGACCTGCTATCTTCGATCTACTTCACTACC-AATATAGGAA
* * * *
14199970 GGCAAGATCTGCAATCTTCAATCTA
1 GACAAGACCTGCTATCTTCGATCTA
14199995 TTCCACTGCC
Statistics
Matches: 228, Mismatches: 54, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
43 41 0.18
44 125 0.55
45 62 0.27
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
GACAAGACCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
Found at i:14199979 original size:45 final size:44
Alignment explanation
Indices: 14199577--14200011 Score: 222
Period size: 44 Copynumber: 9.8 Consensus size: 44
14199567 GGGAGGTAAA
* * * * * *
14199577 ATCTGCCATCGTCGATCTGCTTCGCTGCCCAATACATGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTCAC-G-CCAATACAAGAAGACAAG
* * * * *
14199623 ATCTGCAATCCTCAATCTA-TTCCACTGTCAAATAC-AG-GGACAAG
1 ATCTGCTATCTTCGATCTACTT-CAC-G-CCAATACAAGAAGACAAG
* * * ***
14199667 ATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCA-CGCCAATACAAGAAGACAAG
* * ** * * * *
14199712 ATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCAC-GCCAATACAAGAAGACAAG
* * *
14199755 ACCTGCTATCTTCGATCTACTTCACGCCAATAGATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACGCCAATACAAGAAGACAAG
* * * * *** *
14199799 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGTAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-ACGCCAATACAAGAAGACAAG
* * * * * **
14199844 ATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAAGACCGG
1 ATCTGCTATCTTCGATCTACTTCAC-GCCAATACAAGAAGACAAG
* *
14199887 ACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACGCCAATACAAGAAGACAAG
* * * *
14199931 ATCTGCTTTCTTCGGTCTACTTCCTAC-CTAATACAAGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTT-C-ACGCCAATACAAGAAGACAAG
* *
14199976 ATCTGCAATCTTCAATCTA-TTCCACTGCCAGATACA
1 ATCTGCTATCTTCGATCTACTT-CAC-GCCA-ATACA
14200012 GGGAGATAGA
Statistics
Matches: 299, Mismatches: 73, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
42 2 0.01
43 44 0.15
44 148 0.49
45 73 0.24
46 32 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTACTTCACGCCAATACAAGAAGACAAG
Found at i:14199982 original size:132 final size:132
Alignment explanation
Indices: 14199661--14199953 Score: 478
Period size: 132 Copynumber: 2.2 Consensus size: 132
14199651 CAAATACAGG
* * * *
14199661 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGA
1 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCGTCGA
* * *
14199726 TCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATAGATG
66 TCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
14199791 AA
131 AA
* * *
14199793 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGTAGACAAGATCTGCATCGTCGA
1 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCGTCGA
*
14199858 TCCACTTCCTACCAATATAGGAAGACCGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
66 TCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
14199923 AA
131 AA
*
14199925 GACAAGATCTGCTTTCTTCGGTCTACTTC
1 GACAAGATCTGCTTTCTTCGATCTACTTC
14199954 CTACCTAATA
Statistics
Matches: 148, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 148 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (132 bp):
GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCGTCGA
TCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATG
AA
Found at i:14200140 original size:46 final size:46
Alignment explanation
Indices: 14199889--14200417 Score: 156
Period size: 46 Copynumber: 11.8 Consensus size: 46
14199879 AAGACCGGAC
* * * *
14199889 CTGCTATCTTCGATCTACTT-CAC-GCC-AATACATGAAGACAAGAT
1 CTGCAATCTTCAATCTA-TTCCACTGCCTAATACAGGAAGGCAAGAT
** ** * *
14199933 CTGCTTTCTTCGGTCTACTT-C-CTACCTAATACAAGAAGGCAAGAT
1 CTGCAATCTTCAATCTA-TTCCACTGCCTAATACAGGAAGGCAAGAT
* ** *
14199978 CTGCAATCTTCAATCTATTCCACTGCC-AGATACAGGGAGATAGAGTT
1 CTGCAATCTTCAATCTATTCCACTGCCTA-ATACAGGAAGGCA-AGAT
* ** * * * * * *
14200025 AT-C-GGCTTCAATGTACTCTACTG--TAGTCACAGTG-AGGTAAAAT
1 CTGCAATCTTCAATCTATTCCACTGCCTAAT-ACAG-GAAGGCAAGAT
* * * *
14200068 CTGCCATCTTCGATCTGCTT-CGCTGCCTAATACAGGAAGGCAAGAT
1 CTGCAATCTTCAATCT-ATTCCACTGCCTAATACAGGAAGGCAAGAT
* ** *
14200114 CTGCAATCTTCAATCTATTCCACTGCC-AGATACAGGGAGATAAAGTT
1 CTGCAATCTTCAATCTATTCCACTGCCTA-ATACAGGAAG-GCAAGAT
* ** * ** * * * *
14200161 AT-C-GGCTTCAATGTACACCACTG--TAGT-CAGGGAGGTAAAAT
1 CTGCAATCTTCAATCTATTCCACTGCCTAATACAGGAAGGCAAGAT
* * * * *
14200202 CTGCCATCTTCGATCTGCTT-CGCTGCCAAATACAGGAAGGCAAGAT
1 CTGCAATCTTCAATCT-ATTCCACTGCCTAATACAGGAAGGCAAGAT
* ** *
14200248 CTGCAATCTTCAATCTATTCCACTGCC-AGATACAGGGAGATAGAGTT
1 CTGCAATCTTCAATCTATTCCACTGCCTA-ATACAGGAAGGCA-AGAT
* ** * * * * * * *
14200295 AT-C-GGCTTCAATGTACTCCCCTG--TAGT-CAGGGAGGTAAAAT
1 CTGCAATCTTCAATCTATTCCACTGCCTAATACAGGAAGGCAAGAT
* ** * * *
14200336 CTGCCATCTTTGATCTGCTT-CGCTGCCAAATACAGGAAGGCAAGAT
1 CTGCAATCTTCAATCT-ATTCCACTGCCTAATACAGGAAGGCAAGAT
*
14200382 CTGCAATCTTCAATCTATTCCACTGCCAAATACAGG
1 CTGCAATCTTCAATCTATTCCACTGCCTAATACAGG
14200418 GAGATAGAAT
Statistics
Matches: 342, Mismatches: 107, Indels: 70
0.66 0.21 0.13
Matches are distributed among these distances:
41 7 0.02
42 18 0.05
43 28 0.08
44 36 0.11
45 100 0.29
46 137 0.40
47 16 0.05
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (46 bp):
CTGCAATCTTCAATCTATTCCACTGCCTAATACAGGAAGGCAAGAT
Found at i:14200275 original size:134 final size:134
Alignment explanation
Indices: 14199960--14200816 Score: 1477
Period size: 134 Copynumber: 6.4 Consensus size: 134
14199950 CTTCCTACCT
* *
14199960 AATACAAGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
* * *
14200025 ATCGGCTTCAATGTACTCTACTGTAGTCACAGTGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCG
*
14200090 CTGCCT
129 CTGCCA
* *
14200096 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAAAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
* *
14200161 ATCGGCTTCAATGTACACCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
14200226 GCCA
131 GCCA
*
14200230 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
*
14200295 ATCGGCTTCAATGTACTCCCCTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
14200360 GCCA
131 GCCA
*
14200364 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
* * *
14200429 ATCGGCTTCAGTGTACTCTACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTTCGC
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATC-TTTGATCTGCTTCGC
14200494 TGCCA
130 TGCCA
14200499 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
* *
14200564 ATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATATGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
14200629 GCCA
131 GCCA
14200633 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
*
14200698 ATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
14200763 GCCA
131 GCCA
*
14200767 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC-AATACA
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACA
14200817 TGAAGATAAG
Statistics
Matches: 697, Mismatches: 22, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
132 6 0.01
133 3 0.00
134 467 0.67
135 133 0.19
136 88 0.13
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (134 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
GCCA
Found at i:14200549 original size:46 final size:46
Alignment explanation
Indices: 14200493--14200686 Score: 139
Period size: 46 Copynumber: 4.3 Consensus size: 46
14200483 ATCTGCTTCG
14200493 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* ** * * ** * *
14200539 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCA
*** * * * * ** * * *
14200584 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATATGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
14200627 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
14200673 CTGCCAAATACAGG
1 CTGCCAAATACAGG
14200687 GAGATAGAGT
Statistics
Matches: 104, Mismatches: 36, Indels: 16
0.67 0.23 0.10
Matches are distributed among these distances:
41 3 0.03
42 10 0.10
43 11 0.11
44 1 0.01
45 19 0.18
46 56 0.54
47 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:14200613 original size:269 final size:268
Alignment explanation
Indices: 14199960--14200816 Score: 1479
Period size: 269 Copynumber: 3.2 Consensus size: 268
14199950 CTTCCTACCT
* *
14199960 AATACAAGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
* * *
14200025 ATCGGCTTCAATGTACTCTACTGTAGTCACAGTGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCG
* *
14200090 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
129 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
* * *
14200155 A-AAGTTATCGGCTTCAATGTACACCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTG
194 AGAA-TTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTG
14200219 CTTCGCTGCCA
258 CTTCGCTGCCA
*
14200230 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
*
14200295 ATCGGCTTCAATGTACTCCCCTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
14200360 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
131 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
* *
14200425 AATTATCGGCTTCAGTGTACTCTACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTTGATCTGCT
196 AATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATC-TTTGATCTGCT
14200490 TCGCTGCCA
260 TCGCTGCCA
14200499 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
* *
14200564 ATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATATGCTTCGCT
66 ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
14200629 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
131 GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
*
14200694 AGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT
196 AATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT
14200759 CGCTGCCA
261 CGCTGCCA
*
14200767 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC-AATACA
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACA
14200817 TGAAGATAAG
Statistics
Matches: 564, Mismatches: 20, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
266 6 0.01
267 3 0.01
268 202 0.36
269 264 0.47
270 89 0.16
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (268 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTT
ATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCT
GCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
AATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT
CGCTGCCA
Found at i:14200715 original size:403 final size:403
Alignment explanation
Indices: 14199960--14200816 Score: 1497
Period size: 403 Copynumber: 2.1 Consensus size: 403
14199950 CTTCCTACCT
* * *
14199960 AATACAAGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
*
14200025 ATCGGCTTCAATGTACTCTACTGTAGTCACAGTGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
66 ATCGGCTTCAATGTACTCTACTGTAGT-ACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
* *
14200090 CTGCCTAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGAT
130 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
*
14200155 AAAGTTATCGGCTTCAATGTACACCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGC
195 AAAGTTATCGGCTTCAATGTACACCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATATGC
*
14200220 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGG
260 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGG
*
14200285 AGATAGAGTTATCGGCTTCAATGTACTCCCCTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGAT
325 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGAT
14200350 CTGCTTCGCTGCCA
390 CTGCTTCGCTGCCA
14200364 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
* * *
14200429 ATCGGCTTCAGTGTACTCTACTGTGGT-CAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTTCG
66 ATCGGCTTCAATGTACTCTACTGTAGTACAGGGAGGTAAAATCTGCCATC-TTCGATCTGCTTCG
14200493 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
130 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
* * * *
14200558 AGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGATATGC
195 AAAGTTATCGGCTTCAATGTACACCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATATGC
14200623 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGG
260 TTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGG
*
14200688 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTGAT
325 AGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGAT
14200753 CTGCTTCGCTGCCA
390 CTGCTTCGCTGCCA
*
14200767 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC-AATACA
1 AATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACA
14200817 TGAAGATAAG
Statistics
Matches: 433, Mismatches: 18, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
401 6 0.01
402 24 0.06
403 314 0.73
404 89 0.21
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (403 bp):
AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATT
ATCGGCTTCAATGTACTCTACTGTAGTACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGC
TGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATA
AAGTTATCGGCTTCAATGTACACCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATATGCT
TCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGA
GATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATC
TGCTTCGCTGCCA
Found at i:14200918 original size:88 final size:89
Alignment explanation
Indices: 14200737--14201334 Score: 435
Period size: 88 Copynumber: 6.8 Consensus size: 89
14200727 GGGAGGTAAA
* * * ** * * * * *
14200737 ATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTA
1 ATCTGCTATCTTCGATCTACTTCGCCACC-AATATAGGAAGACAAGATCTGCTATCTTCAATCCA
* * * *
14200802 CTTCAC-GCCAATACATGAAGATAAG
65 CTTC-CTACCAATATAGGAAGACAAG
* * * * *
14200827 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAATACAAGATCTGC-ATCGTCAATCCAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATCTTCAATCCAC
**
14200891 TTCCTACCAATATAGGAAGACCGG
66 TTCCTACCAATATAGGAAGACAAG
* *** * ** * * *
14200915 ATCTGCTACCTTCGATCTACTTC-ATGCCAATACATAAAGACAAGATCTGCTTTCTGCAATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATCTTCAATCCAC
* *
14200979 TTCGCCACCAATATGGGAAGACAAG
66 TTC-CTACCAATATAGGAAGACAAG
* * * ** * * *
14201004 ATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAAGACCGGACCTGCTATCTTTCGATCTA
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATC-TTCAATCCA
* * *
14201067 CTT--TACGCCAATACATGAAGATAAG
65 CTTCCTA--CCAATATAGGAAGACAAG
* * * * *
14201092 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCAT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATCTTCAATCCAC
* *
14201156 TTCCTACCAATATAGGAAGATAGG
66 TTCCTACCAATATAGGAAGACAAG
* * * * * * * *
14201180 ATCAGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATCTTCAATCCAC
* *
14201244 TTCGCCACCAATATGGGAAGACAAG
66 TTC-CTACCAATATAGGAAGACAAG
* * * * * * * *
14201269 ATCTGC-ATCTTCGATCCATTTC-CTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATCTTCAATCCAC
14201332 TTC
66 TTC
14201335 TTGCCCCGGG
Statistics
Matches: 397, Mismatches: 99, Indels: 26
0.76 0.19 0.05
Matches are distributed among these distances:
86 1 0.00
87 41 0.10
88 221 0.56
89 87 0.22
90 47 0.12
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (89 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCTATCTTCAATCCAC
TTCCTACCAATATAGGAAGACAAG
Found at i:14200944 original size:132 final size:132
Alignment explanation
Indices: 14200767--14201334 Score: 884
Period size: 132 Copynumber: 4.3 Consensus size: 132
14200757 TTCGCTGCCA
* * * * *
14200767 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTG
1 AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
* * * *
14200832 CTTTCTTCGATCTACTTCGCCACCAGTATGGGAATACAAGATCTGCATCGTCAATCCACTTCCTA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTA
14200897 CC
131 CC
* * * *
14200899 AATATAGGAAGACCGGATCTGCTACCTTCGATCTACTTCATGCCAATACATAAAGACAAGATCTG
1 AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
*
14200964 CTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTA
14201029 CC
131 CC
* * * *
14201031 AATATAGGAAGACCGGACCTGCTATCTTTCGATCTACTTTACGCCAATACATGAAGATAAGATCT
1 AATATAGGAAGACAGGATCTGCTATC-TTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
* *
14201096 GCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCT
65 GCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCT
14201161 ACC
130 ACC
* *
14201164 AATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
1 AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
* * *
14201229 CTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTA
14201294 CC
131 CC
* *
14201296 AATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
1 AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC
14201335 TTGCCCCGGG
Statistics
Matches: 405, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
132 284 0.70
133 121 0.30
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
AATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTA
CC
Found at i:14201266 original size:265 final size:264
Alignment explanation
Indices: 14200767--14201334 Score: 893
Period size: 265 Copynumber: 2.1 Consensus size: 264
14200757 TTCGCTGCCA
* * * * *
14200767 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTG
1 AATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTG
* * *
14200832 CTTTCTTCGATCTACTTCGCCACCAGTATGGGAATACAAGATCTGCATCGTCAATCCACTTCCTA
66 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCAATCCACTTCCTA
* * *
14200897 CCAATATAGGAAGACCGGATCTGCTACCTTCGATCTACTTCATGCCAATACATAAAGACAAGATC
131 CCAATATAGGAAGACAGGATCAGCTACCTTCGATCTACTTCACGCCAATACATAAAGACAAGATC
14200962 TGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCC
196 TGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCC
14201027 TACC
261 TACC
* *
14201031 AATATAGGAAGACCGGACCTGCTATCTTTCGATCTACTTTACGCCAATACATGAAGATAAGATCT
1 AATATAGGAAGACAGGACCTGCTATC-TTCGATCTACTTCACGCCAATACATGAAGATAAGATCT
* * *
14201096 GCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCT
65 GCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCAATCCACTTCCT
* * *
14201161 ACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
130 ACCAATATAGGAAGACAGGATCAGCTACCTTCGATCTACTTCACGCCAATACATAAAGACAAGAT
* * * *
14201226 CTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTC
195 CTGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTC
14201291 CTACC
260 CTACC
* * *
14201296 AATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
1 AATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTC
14201335 TTGCCCCGGG
Statistics
Matches: 275, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
264 32 0.12
265 243 0.88
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (264 bp):
AATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTG
CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCAATCCACTTCCTA
CCAATATAGGAAGACAGGATCAGCTACCTTCGATCTACTTCACGCCAATACATAAAGACAAGATC
TGCTTTCTGCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCC
TACC
Found at i:14205629 original size:19 final size:20
Alignment explanation
Indices: 14205605--14205648 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14205595 CGTGAAAGTC
* *
14205605 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
14205624 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
14205644 -AATGC
1 TAATGC
14205649 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:14210702 original size:21 final size:21
Alignment explanation
Indices: 14210646--14210725 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
14210636 TTGATAGGAT
14210646 TATTATTAGATATAATTTAATAAA
1 TATT-TTA-ATATAATTTAAT-AA
* ** **
14210670 AATAATAA-ATAATTTAATCC
1 TATTTTAATATAATTTAATAA
14210690 TATTTTAATATAATTTAATAA
1 TATTTTAATATAATTTAATAA
*
14210711 TTTTTTAATATAATT
1 TATTTTAATATAATT
14210726 ATTTTTATAA
Statistics
Matches: 44, Mismatches: 11, Indels: 5
0.73 0.18 0.08
Matches are distributed among these distances:
20 5 0.11
21 34 0.77
22 1 0.02
23 2 0.05
24 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (21 bp):
TATTTTAATATAATTTAATAA
Found at i:14210719 original size:16 final size:17
Alignment explanation
Indices: 14210698--14210742 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
14210688 CCTATTTTAA
*
14210698 TATAATTTAATAATTTT
1 TATAATATAATAATTTT
*
14210715 T-TAATATAATTATTTT
1 TATAATATAATAATTTT
*
14210731 TATAATAAAATA
1 TATAATATAATA
14210743 TTTCAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATAATATAATAATTTT
Found at i:14223481 original size:50 final size:50
Alignment explanation
Indices: 14223357--14223605 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
14223347 GATAATAACA
* * ** * *
14223357 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
14223408 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
14223458 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
14223508 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
14223563 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
14223606 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:14223535 original size:100 final size:104
Alignment explanation
Indices: 14223356--14223605 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
14223346 TGATAATAAC
**
14223356 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
14223421 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
14223458 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
14223521 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
14223563 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14223606 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:14223721 original size:13 final size:13
Alignment explanation
Indices: 14223700--14223731 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14223690 GCTTGGATCA
*
14223700 TCATCAAATAAAT
1 TCATAAAATAAAT
14223713 TCATAAAATAAAT
1 TCATAAAATAAAT
14223726 TCATAA
1 TCATAA
14223732 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:14223978 original size:30 final size:30
Alignment explanation
Indices: 14223943--14224000 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14223933 CCTCAACTCT
*
14223943 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
14223973 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
14224001 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:14226203 original size:297 final size:297
Alignment explanation
Indices: 14225669--14226269 Score: 1193
Period size: 297 Copynumber: 2.0 Consensus size: 297
14225659 GTGTATTGCT
14225669 ATACATGCCATACTTAAGTTTTACAAGCCATTTACCAAAAAAAGTCCTTCGGATAGTGTGATCGA
1 ATACATGCCATACTTAAGTTTTACAAGCCATTTACCAAAAAAAGTCCTTCGGATAGTGTGATCGA
14225734 ACCTTCGACCTGTCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAATGAATGAAAAGGAGGGAG
66 ACCTTCGACCTGTCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAATGAATGAAAAGGAGGGAG
14225799 TAAGCATAAATGCTTAGTAAGTCATATGCAAATAACAAGTAACATAACAATACAATTATACCAAA
131 TAAGCATAAATGCTTAGTAAGTCATATGCAAATAACAAGTAACATAACAATACAATTATACCAAA
14225864 CAACCTTAGCATGGTATCACCAAAACATATATCACATTTCTAAACATCATTAATCATCTTACCAC
196 CAACCTTAGCATGGTATCACCAAAACATATATCACATTTCTAAACATCATTAATCATCTTACCAC
14225929 CTTATCGTTGTTGTATCTATTTTCAACCCGAAGGTTA
261 CTTATCGTTGTTGTATCTATTTTCAACCCGAAGGTTA
14225966 ATACATGCCATACTTAAGTTTTACAAGCCATTTACCAAAAAAAGTCCTTCGGATAGTGTGATCGA
1 ATACATGCCATACTTAAGTTTTACAAGCCATTTACCAAAAAAAGTCCTTCGGATAGTGTGATCGA
14226031 ACCTTCGACCTGTCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAATGAATGAAAAGGAGGGAG
66 ACCTTCGACCTGTCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAATGAATGAAAAGGAGGGAG
14226096 TAAGCATAAATGCTTAGTAAGTCATATGCAAATAACAAGTAACATAACAATACAATTATACCAAA
131 TAAGCATAAATGCTTAGTAAGTCATATGCAAATAACAAGTAACATAACAATACAATTATACCAAA
14226161 CAACCTTAGCATGGTATCACCAAAACATATATCACATTTCTAAACATCATTAATCATCTTACCAC
196 CAACCTTAGCATGGTATCACCAAAACATATATCACATTTCTAAACATCATTAATCATCTTACCAC
14226226 CTTATCGTTGTTGTATCTATTTTCAACCCGAAGGTTA
261 CTTATCGTTGTTGTATCTATTTTCAACCCGAAGGTTA
14226263 AGTACAT
1 A-TACAT
14226270 ACCTGTCCAA
Statistics
Matches: 303, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
297 298 0.98
298 5 0.02
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.28
Consensus pattern (297 bp):
ATACATGCCATACTTAAGTTTTACAAGCCATTTACCAAAAAAAGTCCTTCGGATAGTGTGATCGA
ACCTTCGACCTGTCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAATGAATGAAAAGGAGGGAG
TAAGCATAAATGCTTAGTAAGTCATATGCAAATAACAAGTAACATAACAATACAATTATACCAAA
CAACCTTAGCATGGTATCACCAAAACATATATCACATTTCTAAACATCATTAATCATCTTACCAC
CTTATCGTTGTTGTATCTATTTTCAACCCGAAGGTTA
Found at i:14226593 original size:47 final size:47
Alignment explanation
Indices: 14226441--14226617 Score: 193
Period size: 47 Copynumber: 3.8 Consensus size: 47
14226431 TGTAACCCGC
* * *
14226441 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
*
14226487 CCATAAGTGAACTCGGACTCAACTCAACGAATTCGGATACCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--A-C-AGTTCACAT
* * * * * *
14226537 -C-TCA-CGAACTCAGACTCAACTTAACGAGTTCTGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
14226581 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14226618 TGTTCAACCA
Statistics
Matches: 106, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
43 3 0.03
44 5 0.05
45 2 0.02
46 36 0.34
47 50 0.47
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
Found at i:14226609 original size:94 final size:93
Alignment explanation
Indices: 14226449--14226618 Score: 259
Period size: 94 Copynumber: 1.8 Consensus size: 93
14226439 GCCCATAAGT
* * *
14226449 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
14226514 CGAATTCGGATACCTAGTTACATCTCAC
66 CGAATTCGGATACCTAGTTACATCTCAC
* * * *
14226542 GAACTCAGACTCAACTTAACGAGTTCTGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
*
14226607 ACGAGTTCGGAT
65 ACGAATTCGGAT
14226619 GTTCAACCAT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
93 25 0.37
94 43 0.63
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAATTCGGATACCTAGTTACATCTCAC
Found at i:14227073 original size:30 final size:30
Alignment explanation
Indices: 14227039--14227098 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
14227029 CCTTAATACG
14227039 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
14227069 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
14227099 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:14231386 original size:21 final size:20
Alignment explanation
Indices: 14231352--14231391 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14231342 CCAATGAAAT
*
14231352 CGAAAGAGAAATTACATTAAC
1 CGAAAGACAAATTA-ATTAAC
*
14231373 CGAAAGACACATTAATTAA
1 CGAAAGACAAATTAATTAA
14231392 AATTCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.20
Consensus pattern (20 bp):
CGAAAGACAAATTAATTAAC
Found at i:14237009 original size:46 final size:46
Alignment explanation
Indices: 14236949--14237268 Score: 399
Period size: 46 Copynumber: 7.0 Consensus size: 46
14236939 TTTGACATGA
* * * * * * *
14236949 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * *
14236995 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*** *** * *
14237041 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
14237087 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
14237133 TGCCATGGTATCTTTCAACCATGGCCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
14237179 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
14237225 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
14237269 AGAGCACACT
Statistics
Matches: 246, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 242 0.98
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:14243376 original size:38 final size:39
Alignment explanation
Indices: 14243293--14243426 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
14243283 CCAATATGGA
*
14243293 ACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGAC
1 ACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGAC
* * **
14243332 ACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGGT
1 ACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGAC
* * *
14243370 ACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGAC
1 ACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGAC
*
14243411 ACCCAGTGTCTCATCG
1 ACCCAGTGCCTCATCG
14243427 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.26
39 35 0.47
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
ACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGAC
Found at i:14244999 original size:5 final size:5
Alignment explanation
Indices: 14244989--14245033 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
14244979 TTTCTTTTAT
14244989 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
14245034 CTTAATTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:14246532 original size:18 final size:20
Alignment explanation
Indices: 14246517--14246553 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14246507 TAATAATAAA
*
14246517 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
14246537 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
14246554 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:14256273 original size:3 final size:3
Alignment explanation
Indices: 14256260--14256289 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
14256250 GTTGGGGGAT
*
14256260 AAG ATG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14256290 GGGTTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:14257557 original size:23 final size:23
Alignment explanation
Indices: 14257530--14257581 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
14257520 TGATTTAAAC
14257530 AAATACTT-ATATTTATATAAT-TA
1 AAATA-TTCATATTT-TATAATATA
*
14257553 AAATATTCATATTTTATATTATA
1 AAATATTCATATTTTATAATATA
14257576 AAATAT
1 AAATAT
14257582 GATTATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATATTCATATTTTATAATATA
Found at i:14257596 original size:6 final size:6
Alignment explanation
Indices: 14257585--14257612 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14257575 AAAATATGAT
14257585 TATTAA TATTAA TATTAA TATTAA TATT
1 TATTAA TATTAA TATTAA TATTAA TATT
14257613 TTAAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TATTAA
Found at i:14257598 original size:18 final size:18
Alignment explanation
Indices: 14257577--14257612 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14257567 TATATTATAA
*
14257577 AATATGATTATTAATATT
1 AATATGAATATTAATATT
*
14257595 AATATTAATATTAATATT
1 AATATGAATATTAATATT
14257613 TTAAATATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
AATATGAATATTAATATT
Found at i:14258069 original size:6 final size:7
Alignment explanation
Indices: 14258043--14258068 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14258033 ACTACTATTC
14258043 CTTTTTA
1 CTTTTTA
14258050 CTTTTTA
1 CTTTTTA
14258057 CTTTTTA
1 CTTTTTA
14258064 CTTTT
1 CTTTT
14258069 ATCATGCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (7 bp):
CTTTTTA
Found at i:14266231 original size:24 final size:22
Alignment explanation
Indices: 14266204--14266269 Score: 55
Period size: 21 Copynumber: 3.0 Consensus size: 22
14266194 TGTAATTCTA
14266204 TTAAAAATATAATTTTAAATATTT
1 TTAAAAATATAATTTT-AATA-TT
* *
14266228 TTAAGTAA-CTAATTTTAATATT
1 TTAA-AAATATAATTTTAATATT
* *
14266250 TT-AAAATTTAATTTGAATAT
1 TTAAAAATATAATTTTAATAT
14266270 ATGAATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
20 2 0.06
21 12 0.34
22 4 0.11
23 4 0.11
24 11 0.31
25 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (22 bp):
TTAAAAATATAATTTTAATATT
Found at i:14271398 original size:33 final size:33
Alignment explanation
Indices: 14271338--14271411 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
14271328 AACTTGAGTT
* * * *
14271338 GGGAGGAGTGGAGTACTGCGATTGATACGGGTC
1 GGGAGGAGTAGAGTACGGCGATGGATACGGGCC
* *
14271371 GGGAGGAGTAGAGTACGGTGGTGGATACGGGCC
1 GGGAGGAGTAGAGTACGGCGATGGATACGGGCC
*
14271404 GGAAGGAG
1 GGGAGGAG
14271412 CGGAGCACTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.23, C:0.11, G:0.50, T:0.16
Consensus pattern (33 bp):
GGGAGGAGTAGAGTACGGCGATGGATACGGGCC
Found at i:14274534 original size:21 final size:21
Alignment explanation
Indices: 14274500--14274562 Score: 65
Period size: 24 Copynumber: 2.8 Consensus size: 21
14274490 AATACATTAC
14274500 CTTTTTTCTTTCTTTCTTCT-T
1 CTTTTTT-TTTCTTTCTTCTCT
14274521 CTTCTTTTTTTCTTCTCCTTTCTCT
1 CTT-TTTTTTTCTT-T-C-TTCTCT
*
14274546 CTTTTTTTTTCTCTCTT
1 CTTTTTTTTTCTTTCTT
14274563 TCGGTGTGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
21 11 0.31
22 6 0.17
23 2 0.06
24 13 0.36
25 4 0.11
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (21 bp):
CTTTTTTTTTCTTTCTTCTCT
Found at i:14274548 original size:14 final size:14
Alignment explanation
Indices: 14274509--14274562 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
14274499 CCTTTTTTCT
14274509 TTCTTTCT-TCTTC
1 TTCTTTCTCTCTTC
* *
14274522 TTCTTTTTTTCTTC
1 TTCTTTCTCTCTTC
* *
14274536 TCCTTTCTCTCTTT
1 TTCTTTCTCTCTTC
*
14274550 TTTTTTCTCTCTT
1 TTCTTTCTCTCTT
14274563 TCGGTGTGGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
13 7 0.21
14 26 0.79
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (14 bp):
TTCTTTCTCTCTTC
Found at i:14274713 original size:21 final size:21
Alignment explanation
Indices: 14274687--14274732 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
14274677 CTTGGGGGAG
*
14274687 GGGCAGCTGGGTTTACTGTTC
1 GGGCAGCTAGGTTTACTGTTC
14274708 GGGCAGCTAGGTTTACTGTTC
1 GGGCAGCTAGGTTTACTGTTC
14274729 GGGC
1 GGGC
14274733 TGCCCATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.11, C:0.20, G:0.39, T:0.30
Consensus pattern (21 bp):
GGGCAGCTAGGTTTACTGTTC
Found at i:14287018 original size:25 final size:25
Alignment explanation
Indices: 14286970--14287095 Score: 85
Period size: 25 Copynumber: 5.1 Consensus size: 25
14286960 TTAATGTATA
* * *
14286970 CTCATACGAGCTGTA-AACGAGAAG
1 CTCATCCGAGCTGAATAACGGGAAG
* *
14286994 CTCCTCCTAGCTGAATAACGGGAAG
1 CTCATCCGAGCTGAATAACGGGAAG
* * *
14287019 CTCATGCGAGCTGAGTAATGGGAAG
1 CTCATCCGAGCTGAATAACGGGAAG
* * ***
14287044 CTCATGCGAGCT-AAGTATCAATAAG
1 CTCATCCGAGCTGAA-TAACGGGAAG
* * *
14287069 CTCATGCGAGCTAAATATCGGGAAG
1 CTCATCCGAGCTGAATAACGGGAAG
14287094 CT
1 CT
14287096 TATGTGAGCT
Statistics
Matches: 80, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
24 12 0.15
25 66 0.82
26 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
CTCATCCGAGCTGAATAACGGGAAG
Found at i:14287104 original size:25 final size:25
Alignment explanation
Indices: 14287002--14287106 Score: 104
Period size: 25 Copynumber: 4.2 Consensus size: 25
14286992 AGCTCCTCCT
* *
14287002 AGCTGAATAACGGGAAGCTCATGCG
1 AGCTAAATATCGGGAAGCTCATGCG
* *
14287027 AGCTGAGTAAT-GGGAAGCTCATGCG
1 AGCTAAAT-ATCGGGAAGCTCATGCG
* ***
14287052 AGCTAAGTATCAATAAGCTCATGCG
1 AGCTAAATATCGGGAAGCTCATGCG
* *
14287077 AGCTAAATATCGGGAAGCTTATGTG
1 AGCTAAATATCGGGAAGCTCATGCG
14287102 AGCTA
1 AGCTA
14287107 TGGCATGTAC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 2 0.03
25 63 0.95
26 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (25 bp):
AGCTAAATATCGGGAAGCTCATGCG
Done.