Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 40 of 318
Found at i:14984275 original size:74 final size:73
Alignment explanation
Indices: 14983927--14984966 Score: 1260
Period size: 74 Copynumber: 14.2 Consensus size: 73
14983917 AATTTTCGTT
* * * * * * *
14983927 TTTTTAATTTATGTTTCTAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
* *
14983992 CTGACGTA
66 TTGAGGTA
* * * * * *
14984000 ATTTCAA--T-T-TTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
14984061 TTGAGGTA
66 TTGAGGTA
* * * * *
14984069 TTTTCAATTTCAGTTTTTCAAAAAAATCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
*
14984134 CGCTGAGGTA
64 CGTTGAGGTA
* * * * *
14984144 ATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
14984209 TTGAGGTA
66 TTGAGGTA
* * *
14984217 TTTTCAATTTCTATCTTTTAAAAAATCAGCTTATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
1 TTTTCAATTTCTGT-TTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
14984282 GTTGAGGTA
65 GTTGAGGTA
* *
14984291 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCCATAGGTGAGTTGAACCTCAAG--AC
1 TTTTCAATTTCTGTTTTT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
*
14984354 GCTGAGGTA
65 GTTGAGGTA
* * * * *
14984363 ATTCCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTT-TTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
14984428 GTTGAGGTA
65 GTTGAGGTA
* *
14984437 TTTTCAATTTCTGTCTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAGA
1 TTTTCAATTTCTGT-TTTT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
14984502 CGTTGAGGTA
64 CGTTGAGGTA
* *
14984512 TTTTCAATTTCTGTTTTTCAAAAAAATTAACTCATATTGCGATAGGTGAGTTGAACCTCAAGA-A
1 TTTTCAATTTCTGTTTTT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
*
14984576 -GCTGAGGTA
64 CGTTGAGGTA
* * * * * *
14984585 ATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
14984650 TTGAGGTA
66 TTGAGGTA
* * *
14984658 TTTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAT
1 TTTTCAATTTCTGT-TTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
14984723 GTTGAGGTA
65 GTTGAGGTA
* *
14984732 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATATGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTGTTTTT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
*
14984795 CGCTGAGGTAA
64 CGTTGAGGT-A
* * * * * *
14984806 TTTT-AATTTTTGTTTGTCAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
14984870 TTGAGGTA
66 TTGAGGTA
* *
14984878 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGT-TTT--TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
* *
14984941 ACGCTGAGGTG
63 ACGTTGAGGTA
*
14984952 TTTTCCATTTCTGTT
1 TTTTCAATTTCTGTT
14984967 CTTCAATTTC
Statistics
Matches: 835, Mismatches: 106, Indels: 52
0.84 0.11 0.05
Matches are distributed among these distances:
69 57 0.07
70 1 0.00
71 77 0.09
72 68 0.08
73 158 0.19
74 227 0.27
75 210 0.25
76 37 0.04
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
TTGAGGTA
Found at i:14984446 original size:220 final size:220
Alignment explanation
Indices: 14983932--14984972 Score: 1639
Period size: 220 Copynumber: 4.7 Consensus size: 220
14983922 TCGTTTTTTT
* * * * * * * *
14983932 AATTTATGTTTCTAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAC
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
* * * * * *
14983997 GTAATTTCAATTTTTGTC-----AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGA
66 GTATTTTCAATTTCTGTCTTTTAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* *
14984057 CACGTTGAGGTATTTTCAATTTCAGTTTTTCAAAAAAATCAACTCATATTGTGATAGGTGAGTTG
131 CACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTG
* *
14984122 AGCCTCAGGACACGCTGAGGTAATTTC
196 AACCTCA--AGACGCTGAGGTAATTTC
14984149 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
* *
14984214 GTATTTTCAATTTCTATCTTTTAAAAAATCAGCTTATATTGCGAGAGGTGAGTTGAACCTCAAGA
66 GTATTTTCAATTTCTGTCTTTTAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
*
14984279 CACGTTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCCATAGGTGAGTTG
131 CACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTG
*
14984343 AACCTCAAGACGCTGAGGTAATTCC
196 AACCTCAAGACGCTGAGGTAATTTC
14984368 AATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 AATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
14984433 GGTATTTTCAATTTCTGTCTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAA
65 GGTATTTTCAATTTCTGTCTTTT-AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAA
* *
14984498 GAGACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATTAACTCATATTGCGATAGGTGAGT
129 GACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGT
*
14984563 TGAACCTCAAGAAGCTGAGGTAATTTC
194 TGAACCTCAAGACGCTGAGGTAATTTC
*
14984590 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
*
14984655 GTATTTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
66 GTATTTTCAATTTCTGTCTTTTAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* *
14984720 CATGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATATGTGAGTTG
131 CACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTG
*
14984785 AACCTCAAGACGCTGAGGTAATTTT
196 AACCTCAAGACGCTGAGGTAATTTC
* *
14984810 AATTTTTGTTTGTCAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
*
14984875 GTATTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAA
66 GTATTTTCAATTTCTGTCTTT--TAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAA
* * * *
14984940 G--ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAA
129 GACACGTTGAGGTATTTTCAATTTCTGTTTTTCAA
14984973 TTTCTGTGTT
Statistics
Matches: 769, Mismatches: 45, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
217 72 0.09
219 30 0.04
220 309 0.40
221 180 0.23
222 178 0.23
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (220 bp):
AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
GTATTTTCAATTTCTGTCTTTTAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
CACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTG
AACCTCAAGACGCTGAGGTAATTTC
Found at i:14984852 original size:441 final size:441
Alignment explanation
Indices: 14983928--14984972 Score: 1660
Period size: 441 Copynumber: 2.4 Consensus size: 441
14983918 ATTTTCGTTT
* * * * *
14983928 TTTTAATTTATGTTTCTAAAAAATCAACTCATATTACGAGAA-GTGAGTTGAGCCTCAGGACACG
1 TTTTAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAAGACACG
* * * * * * * *
14983992 CTGACGTAATTTCAATTTTTGTC-----AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCT
65 TTGAGGTATTTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCT
* * *
14984052 CAAGACACGTTGAGGTATTTTCAATTTCAGTTTTTCAAAAAAATCAACTCATATTGTGATAGGTG
130 CAAGAGACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTG
* *
14984117 AGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGC
195 AGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGC
* *
14984182 GAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATCTTTTAAAAAATCAGC
260 GAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATCTTTAAAAAAATCAGC
*
14984247 TTATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAA
325 TCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAA
14984312 AAAATCAACTCATATTGCCATAGGTGAGTTGAACCTCAAGACGCTGAGGTAA
390 AAAATCAACTCATATTGCCATAGGTGAGTTGAACCTCAAGACGCTGAGGTAA
** *
14984364 TTCCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACG
14984429 TTGAGGTATTTTCAATTTCTGTCTTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC
65 TTGAGGTATTTTCAATTTCTGTC-TTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC
*
14984494 TCAAGAGACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATTAACTCATATTGCGATAGGT
129 TCAAGAGACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGT
14984559 GAGTTGAACCTCAAGA-A-GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTG
194 GAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTG
*
14984622 CGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAATCAG
259 CGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATCTTTAAAAAAATCAG
*
14984687 CTCATATTGCGAGAGGTGAGTTGAACCTCAAGACATGTTGAGGTATTTTCAATTTCTGTTTTTCA
324 CTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTC-
* *
14984752 AAAAAATCAACTCATATTGCGATATGTGAGTTGAACCTCAAGACGCTGAGGTAA
388 AAAAAATCAACTCATATTGCCATAGGTGAGTTGAACCTCAAGACGCTGAGGTAA
*
14984806 TTTTAATTTTTGTTTGTCAAAAATCAACTCATATTGTGAAAGGTGAGTTGAGCCTCAAGACACGT
1 TTTTAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGT
14984871 TGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC
66 TGAGGTATTTTCAATTTCTGTCTTT--AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC
* * * *
14984936 TC-A-AGACGCTGAGGTGTTTTCCATTTCTGTTCTTCAA
129 TCAAGAGACGTTGAGGTATTTTCAATTTCTGTTTTTCAA
14984973 TTTCTGTGTT
Statistics
Matches: 561, Mismatches: 37, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
436 14 0.02
437 60 0.11
440 33 0.06
441 238 0.42
442 109 0.19
443 107 0.19
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (441 bp):
TTTTAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGT
TGAGGTATTTTCAATTTCTGTCTTTAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC
AAGAGACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGA
GTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCG
AGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATCTTTAAAAAAATCAGCT
CATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAA
AAATCAACTCATATTGCCATAGGTGAGTTGAACCTCAAGACGCTGAGGTAA
Found at i:14985079 original size:15 final size:14
Alignment explanation
Indices: 14985043--14985075 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14985033 CGCTGAGGTA
14985043 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
14985057 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
14985071 TTTTC
1 TTTTC
14985076 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:14985083 original size:91 final size:90
Alignment explanation
Indices: 14984941--14985380 Score: 438
Period size: 91 Copynumber: 4.9 Consensus size: 90
14984931 GAACCTCAAG
* * * * * * *
14984941 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGC
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
*
14985006 GAGTGGTGAGTTGAGCCTTGATTCAC
66 GAGAGGTGAGTTGAGCCTTGA-TCAC
*
14985032 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* * **
14985096 CGAGAGGTGAGTTCAGCC-TCAGGAC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
* * * *
14985121 ACACTGAGATATTTTC-AATT-T-CTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGC
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
*
14985183 GAGAGGTGAGTTGAGCCTCAGATCAC
66 GAGAGGTGAGTTGAGCCT-TGATCAC
* * * *
14985209 ACGCCGAGGTATTTTCAATTGATT-TTTTTTTCAATTTATGCTTTGC--AAAAATCAACTCATAT
1 ACGCTGAGGTATTTTCAA---ATTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATAT
* * *
14985271 TACGAGAGGTGAGTTGAGCCTCGGGTCAC
63 TGCGAGAGGTGAGTTGAGCCT-TGATCAC
** * * *
14985300 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
*
14985360 CGAGAAGTGAGTTGAGCCTTG
65 CGAGAGGTGAGTTGAGCCTTG
14985381 GCTCACGTGT
Statistics
Matches: 297, Mismatches: 41, Indels: 27
0.81 0.11 0.07
Matches are distributed among these distances:
85 5 0.02
86 49 0.16
87 36 0.12
88 25 0.08
89 25 0.08
90 7 0.02
91 125 0.42
92 9 0.03
93 16 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGATCAC
Found at i:14985196 original size:177 final size:173
Alignment explanation
Indices: 14984878--14985380 Score: 536
Period size: 177 Copynumber: 2.8 Consensus size: 173
14984868 CGTTGAGGTA
* * * * *
14984878 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATTTATG-CTTTC-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * * *
14984941 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGC
64 ACACTGAGGTATTTTCAATTTC--TT-TTCAATTT-TGT-TTTCAAAAAAATCAACTCATATTGC
* *
14985006 GAGTGGTGAGTTGAGCCTTGATTCACACGCTGAGGTATTTTCAA-ATTCTGT
124 GAGAGGTGAGTTGAGCCTTGA-TCACACGCCGAGGTATTTTCAATATT-TGT
* *
14985057 TTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGAC
1 TTTTC-AATTTATG-CTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
14985121 ACACTGAGATATTTTCAATTTCTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAG
64 ACACTGAGGTATTTTCAATTTCTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCGAG
* *
14985186 AGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTGATTTTT
127 AGGTGAGTTGAGCCT-TGATCACACGCCGAGGTATTTTCAA-T-ATTTGT
* * *
14985236 TTTTCAATTTATGCTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
* * * *
14985300 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT---AAAAATCAACTCATATTGCG
64 ACACTGAGGTATTTTC--AATTTCTTTT-C-AATTTTGTTTTCAAAAAAATCAACTCATATTGCG
*
14985362 AGAAGTGAGTTGAGCCTTG
125 AGAGGTGAGTTGAGCCTTG
14985381 GCTCACGTGT
Statistics
Matches: 281, Mismatches: 28, Indels: 32
0.82 0.08 0.09
Matches are distributed among these distances:
176 2 0.01
177 110 0.39
178 86 0.31
179 36 0.13
180 27 0.10
181 9 0.03
182 6 0.02
183 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (173 bp):
TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
ACTGAGGTATTTTCAATTTCTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTTGATCACACGCCGAGGTATTTTCAATATTTGT
Found at i:14985556 original size:21 final size:21
Alignment explanation
Indices: 14985532--14985574 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14985522 TATATCCCTA
14985532 AAGTTACAGTGAAGCTAATTG
1 AAGTTACAGTGAAGCTAATTG
* * *
14985553 AAGTTGCAGTGGAGCTGATTG
1 AAGTTACAGTGAAGCTAATTG
14985574 A
1 A
14985575 TGATATCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (21 bp):
AAGTTACAGTGAAGCTAATTG
Found at i:14986133 original size:30 final size:30
Alignment explanation
Indices: 14986097--14986163 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
14986087 CTAGCCTTTG
*
14986097 CCACCACCAACTCCACTAGCTACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
14986127 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
14986157 CCACCAC
1 CCACCAC
14986164 TACTTGTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.25, C:0.51, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:14986748 original size:27 final size:25
Alignment explanation
Indices: 14986709--14986777 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
14986699 ATTCTAAATT
**
14986709 CTATATTACATATATATA-TT-ATA
1 CTATATTATGTATATATATTTAATA
* *
14986732 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
*
14986757 CTATATTATTTATATATATTT
1 CTATATTATGTATATATATTT
14986778 TTTCTACATG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
23 14 0.38
24 2 0.05
25 21 0.57
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:14986818 original size:22 final size:23
Alignment explanation
Indices: 14986788--14986854 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 23
14986778 TTTCTACATG
*
14986788 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
14986810 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
*
14986835 TTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
14986855 TTTATATCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
22 11 0.29
23 6 0.16
24 8 0.21
25 13 0.34
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:14986818 original size:27 final size:25
Alignment explanation
Indices: 14986726--14986843 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 25
14986716 ACATATATAT
*
14986726 ATTATACTATTTTATGTATATATCTTTA
1 ATTATATTA-TTTATGTATAT-T-TTTA
* *
14986754 ATACTATATTATTTATATATATTTTTT
1 AT--TATATTATTTATGTATATTTTTA
* * *
14986781 CTACATGTTATCTTATGTATATATTTTA
1 AT-TATATTAT-TTATGTATAT-TTTTA
*
14986809 ATTATATTATGTATGTAT-TTTTTA
1 ATTATATTATTTATGTATATTTTTA
14986833 CATTATATTAT
1 -ATTATATTAT
14986844 GTACATATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
24 5 0.07
25 11 0.15
26 13 0.18
27 19 0.26
28 8 0.11
29 10 0.14
30 6 0.08
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (25 bp):
ATTATATTATTTATGTATATTTTTA
Found at i:14986944 original size:25 final size:24
Alignment explanation
Indices: 14986916--14986971 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
14986906 GTTATATTTT
*
14986916 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
14986941 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
14986964 CACTATTA
1 CACTATTA
14986972 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:14993959 original size:25 final size:25
Alignment explanation
Indices: 14993931--14993982 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
14993921 TTTGGCTTGA
**
14993931 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
*
14993956 CATTTACTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
14993981 CA
1 CA
14993983 AATTATTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:14997145 original size:40 final size:40
Alignment explanation
Indices: 14997094--14997196 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
14997084 CCATAGTAAA
* *
14997094 CAGGAACAAATCCTATCCACTTTATATAT-TTCTAGTGAAT
1 CAGGAATAAATCCTATTCACTTTA-ATATCTTCTAGTGAAT
* * *
14997134 CAGGAATAAATCATATTCACTTTAATTTCTTTTAGTGAAT
1 CAGGAATAAATCCTATTCACTTTAATATCTTCTAGTGAAT
14997174 CAGGAATAAATCCTATTCACTTT
1 CAGGAATAAATCCTATTCACTTT
14997197 TAATTCTCGA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.05
40 53 0.95
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (40 bp):
CAGGAATAAATCCTATTCACTTTAATATCTTCTAGTGAAT
Found at i:14998118 original size:27 final size:25
Alignment explanation
Indices: 14998066--14998150 Score: 74
Period size: 27 Copynumber: 3.5 Consensus size: 25
14998056 ATTTCTCCCT
*
14998066 TTTCTTTCT-TT-T-CC-TTTTTCC
1 TTTCTTTCTGTTCTCCCTTTTTTTC
14998087 TTTCTTTCT-TTCTCCCCTGTTTTTTC
1 TTTCTTTCTGTTCT-CCCT-TTTTTTC
*
14998113 GTTTCTATTCTGTTCTTCCTTTTTTTC
1 -TTTCT-TTCTGTTCTCCCTTTTTTTC
14998140 TTTCTTT-TGTT
1 TTTCTTTCTGTT
14998151 TCTTTTGTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
21 11 0.20
22 1 0.02
24 6 0.11
25 2 0.04
26 11 0.20
27 12 0.22
28 7 0.13
29 4 0.07
ACGTcount: A:0.01, C:0.25, G:0.05, T:0.69
Consensus pattern (25 bp):
TTTCTTTCTGTTCTCCCTTTTTTTC
Found at i:14998137 original size:28 final size:27
Alignment explanation
Indices: 14998080--14998146 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
14998070 TTTCTTTTCC
14998080 TTTTTCCTTTCTTTCTTTCTCCCCTGT
1 TTTTTCCTTTCTTTCTTTCTCCCCTGT
* *
14998107 TTTTTCGTTTCTATTCTGTTCT-TCCT-T
1 TTTTTCCTTTCT-TTCT-TTCTCCCCTGT
14998134 TTTTT-CTTTCTTT
1 TTTTTCCTTTCTTT
14998147 TGTTTCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 2 0.06
26 5 0.14
27 17 0.49
28 7 0.20
29 4 0.11
ACGTcount: A:0.01, C:0.25, G:0.04, T:0.69
Consensus pattern (27 bp):
TTTTTCCTTTCTTTCTTTCTCCCCTGT
Found at i:15002426 original size:6 final size:6
Alignment explanation
Indices: 15002417--15002451 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
15002407 TGCACCCACA
15002417 CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CCTGC
1 CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CCTGC
15002452 TGCATATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.66, G:0.17, T:0.17
Consensus pattern (6 bp):
CCTGCC
Found at i:15006701 original size:5 final size:5
Alignment explanation
Indices: 15006693--15006719 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15006683 CTAATTTAAT
15006693 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
15006720 ATAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:15007261 original size:23 final size:25
Alignment explanation
Indices: 15007235--15007281 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
15007225 TATCATTCAT
*
15007235 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
15007258 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
15007282 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:15007602 original size:46 final size:46
Alignment explanation
Indices: 15007542--15007891 Score: 428
Period size: 46 Copynumber: 8.0 Consensus size: 46
15007532 TTTGACGTGA
* * * * * *
15007542 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
15007588 TGCCATGATATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
15007634 TGTCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
15007680 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
15007726 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
15007764 TGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
15007810 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
15007848 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
15007892 AGAGCACACT
Statistics
Matches: 269, Mismatches: 18, Indels: 34
0.84 0.06 0.11
Matches are distributed among these distances:
38 66 0.25
39 2 0.01
40 6 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 6 0.02
46 179 0.67
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:15007682 original size:92 final size:90
Alignment explanation
Indices: 15007542--15007891 Score: 436
Period size: 84 Copynumber: 4.0 Consensus size: 90
15007532 TTTGACGTGA
* * * * * * *
15007542 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGATATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA--TTCTATCAAGTTGCCATGGTATCTTTCAAC
** * * *
15007607 CATGGTCTTATTCTTTTCATGTCACGT
64 CATGGTCTTACACATTTCATATCAGGT
*
15007634 TGTCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAAGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAT-TC-TATCAAGTTGCCATGGTATCTTTCAAC
15007699 CATGGTCTTACACATTTCATATCAGGT
64 CATGGTCTTACACATTTCATATCAGGT
*
15007726 TGCCATGGTATCTTTCAACCATGGTCTT--ACA--C-A-CAGGTTGCCATGGTATCTTTCAACCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATCAAGTTGCCATGGTATCTTTCAACCA
*
15007785 TGGTCTTGCACATTTCATATCAGGT
66 TGGTCTTACACATTTCATATCAGGT
*
15007810 TGCCATGGTATCTTTCAACCATGGTCTT--ACA--C-A-CAGGTTGCCATGGTATCTTTCAACCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATCAAGTTGCCATGGTATCTTTCAACCA
15007869 TGGTCTTACACATTTCATATCAG
66 TGGTCTTACACATTTCATATCAG
15007892 AGAGCACACT
Statistics
Matches: 239, Mismatches: 17, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
84 130 0.54
85 1 0.00
87 1 0.00
90 4 0.02
91 2 0.01
92 101 0.42
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (90 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTCTATCAAGTTGCCATGGTATCTTTCAACCA
TGGTCTTACACATTTCATATCAGGT
Found at i:15007772 original size:38 final size:38
Alignment explanation
Indices: 15007721--15007880 Score: 248
Period size: 38 Copynumber: 4.0 Consensus size: 38
15007711 CATTTCATAT
15007721 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
15007759 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
15007804 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
15007843 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
15007881 TTTCATATCA
Statistics
Matches: 114, Mismatches: 0, Indels: 16
0.88 0.00 0.12
Matches are distributed among these distances:
38 71 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 33 0.29
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:15012967 original size:16 final size:17
Alignment explanation
Indices: 15012936--15012968 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15012926 ATTAAAAAAT
*
15012936 AATAAATTATATTTTTG
1 AATAAAATATATTTTTG
15012953 AATAAAATA-ATTTTTG
1 AATAAAATATATTTTTG
15012969 CTTCAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAAAATATATTTTTG
Found at i:15013091 original size:26 final size:26
Alignment explanation
Indices: 15013062--15013114 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15013052 AGTACTGTAC
15013062 TGTCTTATATAATAAAAATATTAAAT
1 TGTCTTATATAATAAAAATATTAAAT
15013088 TGTCTTATATAATAAAAATATTAAAT
1 TGTCTTATATAATAAAAATATTAAAT
15013114 T
1 T
15013115 ATATTTGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (26 bp):
TGTCTTATATAATAAAAATATTAAAT
Found at i:15016449 original size:23 final size:24
Alignment explanation
Indices: 15016393--15016451 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
15016383 AAATAAATTA
* *
15016393 TTTTATAACAAGTGTACATATATC
1 TTTTATTACAAATGTACATATATC
15016417 TATTTATTACAAATGTACCA-ATAT-
1 T-TTTATTACAAATGTA-CATATATC
15016441 TTTTATTACAA
1 TTTTATTACAA
15016452 TTGTCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 17 0.55
26 2 0.06
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (24 bp):
TTTTATTACAAATGTACATATATC
Found at i:15016593 original size:3 final size:3
Alignment explanation
Indices: 15016585--15016621 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
15016575 ATTTATTTAA
*
15016585 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
15016622 CTTGCCGCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:15027055 original size:10 final size:10
Alignment explanation
Indices: 15027040--15027073 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
15027030 CAGTATGAGA
15027040 TAAAATTTTT
1 TAAAATTTTT
15027050 TAAAATTTTT
1 TAAAATTTTT
* *
15027060 TCAACTTTTT
1 TAAAATTTTT
15027070 TAAA
1 TAAA
15027074 TTTGTTGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (10 bp):
TAAAATTTTT
Found at i:15032059 original size:61 final size:60
Alignment explanation
Indices: 15031949--15032065 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 60
15031939 CTCTTAAAAA
***
15031949 TTAAATTTATTAAATTTTTAGAATTTAAATTAAAATGATAAATTTTGTAAACATTAATAG
1 TTAAATTTATTAAATTTTTAGAATTTAAATTAAAATGATAAAACATGTAAACATTAATAG
* * * *
15032009 TTAAATTTGTTAAATTTTTTA-TATTTAAAATTAAATTTATAAAACATGTAAACATTA
1 TTAAATTTATTAAA-TTTTTAGAATTT-AAATTAAAATGATAAAACATGTAAACATTA
15032066 GAAAACTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
60 17 0.35
61 31 0.65
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (60 bp):
TTAAATTTATTAAATTTTTAGAATTTAAATTAAAATGATAAAACATGTAAACATTAATAG
Found at i:15032784 original size:31 final size:25
Alignment explanation
Indices: 15032715--15032776 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
15032705 TTTAAAAAAA
* *
15032715 TAAATACATCAAATTATTTTTATAT
1 TAAATAAATAAAATTATTTTTATAT
15032740 TAAATAAATAAAATTATTTTTATAT
1 TAAATAAATAAAATTATTTTTATAT
*
15032765 TAAATATATAAA
1 TAAATAAATAAA
15032777 CTTAAAATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (25 bp):
TAAATAAATAAAATTATTTTTATAT
Found at i:15037373 original size:21 final size:21
Alignment explanation
Indices: 15037346--15037393 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
15037336 TTTGTTATAT
15037346 ATTTTTTATATTTA-AAATTTA
1 ATTTTTT-TATTTAGAAATTTA
* *
15037367 CTTTTTTTTTTTAGAAATTTA
1 ATTTTTTTATTTAGAAATTTA
15037388 ATTTTT
1 ATTTTT
15037394 CTTTTTTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTTTTATTTAGAAATTTA
Found at i:15037393 original size:22 final size:20
Alignment explanation
Indices: 15037345--15037401 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
15037335 ATTTGTTATA
* *
15037345 TATTTTTTATATTTAAAATT
1 TATTTTTTTTTTTTAAAATT
*
15037365 TACTTTTTTTTTTTAGAAATT
1 TATTTTTTTTTTTTA-AAATT
*
15037386 TAATTTTTCTTTTTTA
1 T-ATTTTTTTTTTTTA
15037402 CTTCTGAGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 12 0.40
21 6 0.20
22 12 0.40
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (20 bp):
TATTTTTTTTTTTTAAAATT
Found at i:15037398 original size:21 final size:20
Alignment explanation
Indices: 15037356--15037399 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
15037346 ATTTTTTATA
* *
15037356 TTTAAAATTTACTTTTTTTT
1 TTTAAAATTTAATTTTTCTT
15037376 TTTAGAAATTTAATTTTTCTT
1 TTTA-AAATTTAATTTTTCTT
15037397 TTT
1 TTT
15037400 TACTTCTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTAAAATTTAATTTTTCTT
Found at i:15040702 original size:134 final size:133
Alignment explanation
Indices: 15040546--15040827 Score: 332
Period size: 133 Copynumber: 2.1 Consensus size: 133
15040536 GAATATTGCT
* * * * * * * *
15040546 TTCGTTTTAAATAAATTTTTTTAAAATATATGAATGAATTTTTGAAGGGATACTCGATCATTTTA
1 TTCGTTTTAAA-GAATTCTTTTAAAAGACATGAAGGAAATCTTGAAGGGACACTCGATCA-TTTA
15040611 AACAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATCCCGCGAATTGCAAAATATC-GAAT
64 AACAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATCCCGCGAATTGCAAAATATCAG-AT
*
15040675 TTCGCC
128 TTCACC
* * * * * *
15040681 TTCGTTTTAAAGAATTCTTTTAAAAGGCATGAGGGAAATCTTGAAGGGACATTCGATTATTTGAG
1 TTCGTTTTAAAGAATTCTTTTAAAAGACATGAAGGAAATCTTGAAGGGACACTCGATCATTTAAA
* * ** * *
15040746 CAAACGCGAAATTGCCACCCAACACGTTAAGGCACTGTTTCGCGGATTGCCAAATATCAGATTTC
66 CAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATCCCGCGAATTGCAAAATATCAGATTTC
15040811 ACC
131 ACC
*
15040814 TTTGTTTTAAAGAA
1 TTCGTTTTAAAGAA
15040828 AATTGTTTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
133 76 0.61
134 37 0.30
135 11 0.09
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (133 bp):
TTCGTTTTAAAGAATTCTTTTAAAAGACATGAAGGAAATCTTGAAGGGACACTCGATCATTTAAA
CAAACGCGAAATTGCAACCCAACACGTTAAGGCACTATCCCGCGAATTGCAAAATATCAGATTTC
ACC
Found at i:15042939 original size:3 final size:3
Alignment explanation
Indices: 15042931--15042957 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15042921 TCGATGGAAA
15042931 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
15042958 GACAGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15045147 original size:12 final size:12
Alignment explanation
Indices: 15045132--15045194 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
15045122 TGTTATCAAT
15045132 TTATTATTATAA
1 TTATTATTATAA
**
15045144 TTATTATTATGGT
1 TTATTATTAT-AA
*
15045157 TTTTTATT-TAA
1 TTATTATTATAA
*
15045168 ATATTATTATTAA
1 TTATTATTA-TAA
15045181 -TATTATTAT-A
1 TTATTATTATAA
15045191 TTAT
1 TTAT
15045195 GAAATAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 10 0.25
12 19 0.47
13 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTATTATTATAA
Found at i:15045465 original size:24 final size:23
Alignment explanation
Indices: 15045438--15045506 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 23
15045428 TATGTTTTTG
15045438 TTATTAAATAGATATT-TATTATAA
1 TTATTAAATAG-TATTATATTA-AA
* *
15045462 TTATTATTATAGTTTTATATTAAA
1 TTATTA-AATAGTATTATATTAAA
15045486 TTATTAAAT--TATTATTATTAA
1 TTATTAAATAGTATTA-TATTAA
15045507 TAAAATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.11
22 6 0.16
23 2 0.05
24 17 0.45
25 9 0.24
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (23 bp):
TTATTAAATAGTATTATATTAAA
Found at i:15047828 original size:70 final size:75
Alignment explanation
Indices: 15047745--15047920 Score: 184
Period size: 70 Copynumber: 2.3 Consensus size: 75
15047735 ATGTGAACAA
* **
15047745 ATTGGAAATTAAAAGTGATTTGAATT-AAGT-AATTGAATT-AT-G-AATTATGTGAATATTTGA
1 ATTGGAAACTAAAAGTGATTTGAATTGAA-TAAATTGAATTAATAGAAAAGATGTGAATATTTGA
15047805 AA-GTATATTG
65 AATGTATATTG
* *
15047815 ATTGGAAACTAAAAGTGATTTTAATTGAATCAAATTGAATTGAATGAAGAAAAGATGTGAGTATT
1 ATTGGAAACTAAAAGTGATTTGAATTGAAT-AAATTGAATT-AAT--AGAAAAGATGTGAATATT
15047880 TGAAATGTATATTG
62 TGAAATGTATATTG
* * *
15047894 ATTGAAAAGTAATTAGTGATTTGAATT
1 ATTGGAAACTAA-AAGTGATTTGAATT
15047921 TGATTGGAAA
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
70 25 0.29
71 2 0.02
72 9 0.10
74 2 0.02
77 1 0.01
78 17 0.20
79 18 0.21
80 12 0.14
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.38
Consensus pattern (75 bp):
ATTGGAAACTAAAAGTGATTTGAATTGAATAAATTGAATTAATAGAAAAGATGTGAATATTTGAA
ATGTATATTG
Found at i:15048177 original size:34 final size:33
Alignment explanation
Indices: 15048098--15048179 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 33
15048088 AGAAAGTGAA
* * *
15048098 AAAGTGAATTTGAATTTAATGAGAATTGAATTG
1 AAAGTGAATTTGAATTGAAAGAAAATTGAATTG
*
15048131 AATTGTGAATTTGAATTGAAAGTAAAATTGACATTG
1 AA-AGTGAATTTGAATTGAAAG-AAAATTGA-ATTG
15048167 AAAGTG-ATTTGAA
1 AAAGTGAATTTGAA
15048180 ATGTGAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
33 2 0.05
34 23 0.56
35 10 0.24
36 6 0.15
ACGTcount: A:0.43, C:0.01, G:0.21, T:0.35
Consensus pattern (33 bp):
AAAGTGAATTTGAATTGAAAGAAAATTGAATTG
Found at i:15048975 original size:23 final size:25
Alignment explanation
Indices: 15048949--15048995 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
15048939 TATCATTCAT
*
15048949 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
15048972 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
15048996 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:15049316 original size:46 final size:47
Alignment explanation
Indices: 15049256--15049406 Score: 191
Period size: 46 Copynumber: 3.3 Consensus size: 47
15049246 TTTGACGTGA
* * * * *
15049256 TGCCATAGTGTCTTTTAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGTCACGT
*
15049302 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGTCACGT
* * * *
15049348 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGTCACGT
15049394 TGCCATGGTATCT
1 TGCCATGGTATCT
15049407 CAGGTTGCCA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
45 5 0.05
46 87 0.95
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGTCACGT
Found at i:15049411 original size:18 final size:18
Alignment explanation
Indices: 15049388--15049424 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15049378 ACATCTCATA
15049388 TCAGGTTGCCATGGTATC
1 TCAGGTTGCCATGGTATC
15049406 TCAGGTTGCCATGGTATC
1 TCAGGTTGCCATGGTATC
15049424 T
1 T
15049425 TTCAACCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.22, G:0.27, T:0.35
Consensus pattern (18 bp):
TCAGGTTGCCATGGTATC
Found at i:15049423 original size:64 final size:64
Alignment explanation
Indices: 15049346--15049470 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
15049336 TTCATGTCAC
*
15049346 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTCAG
1 GTTGCCATGGTATCTTTCAACCATGGTATTACACATCTCATATCAGGTTGCCATGGTATCTCAG
*
15049410 GTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATATCAGGTTGCCATGGTATCT
1 GTTGCCATGGTATCTTTCAACCATGGTATTACACATCTCATATCAGGTTGCCATGGTATCT
15049471 TTCAACCATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (64 bp):
GTTGCCATGGTATCTTTCAACCATGGTATTACACATCTCATATCAGGTTGCCATGGTATCTCAG
Found at i:15049458 original size:46 final size:46
Alignment explanation
Indices: 15049406--15049501 Score: 183
Period size: 46 Copynumber: 2.1 Consensus size: 46
15049396 CCATGGTATC
15049406 TCAGGTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATA
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATA
*
15049452 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATA
15049498 TCAG
1 TCAG
15049502 AGAGCACACT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (46 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATA
Found at i:15049497 original size:110 final size:110
Alignment explanation
Indices: 15049300--15049501 Score: 341
Period size: 110 Copynumber: 1.8 Consensus size: 110
15049290 TTTCTGTCAT
* ** * *
15049300 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATATCACGTTGCCATGGTATCTTTCA
15049365 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTCAG
66 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTCAG
*
15049410 GTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATATCACGTTGCCATGGTATCTTTCA
*
15049475 ACCATGGTCTTACACATTTCATATCAG
66 ACCATGGTCTTACACATCTCATATCAG
15049502 AGAGCACACT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
110 85 1.00
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (110 bp):
GTTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATATCACGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTCAG
Found at i:15054186 original size:17 final size:18
Alignment explanation
Indices: 15054160--15054200 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
15054150 ACATGTGGAA
*
15054160 AAAAATAATAGAA-G-AT
1 AAAAATAATAAAATGTAT
15054176 AAAAATCAATAAAATGTAT
1 AAAAAT-AATAAAATGTAT
15054195 AAAAAT
1 AAAAAT
15054201 TATTAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 6 0.29
18 1 0.05
19 8 0.38
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAAATAATAAAATGTAT
Found at i:15054207 original size:19 final size:19
Alignment explanation
Indices: 15054174--15054320 Score: 69
Period size: 19 Copynumber: 7.9 Consensus size: 19
15054164 ATAATAGAAG
* *
15054174 ATAAAAATCAATAAAATGT
1 ATAAAAATTATTAAAATGT
* *
15054193 ATAAAAATTATTAAATTTT
1 ATAAAAATTATTAAAATGT
*
15054212 AATAAAAA-TATTAAAACTAGA
1 -ATAAAAATTATTAAAA-T-GT
*
15054233 AAAAAAATTATTAAAAT-T
1 ATAAAAATTATTAAAATGT
*
15054251 A-AAAAA--ATAAAAATCGT
1 ATAAAAATTATTAAAAT-GT
* *
15054268 A-AAAAAATATAAAAAT-T
1 ATAAAAATTATTAAAATGT
* * *
15054285 GTAAAATTTCATAAAAATCGT
1 ATAAAAATT-ATTAAAAT-GT
15054306 A-AAAAATTA-TAAAAT
1 ATAAAAATTATTAAAAT
15054321 TTTATAAAGC
Statistics
Matches: 100, Mismatches: 16, Indels: 25
0.71 0.11 0.18
Matches are distributed among these distances:
15 7 0.07
17 13 0.13
18 11 0.11
19 39 0.39
20 21 0.21
21 9 0.09
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (19 bp):
ATAAAAATTATTAAAATGT
Found at i:15054239 original size:21 final size:20
Alignment explanation
Indices: 15054215--15054257 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
15054205 AAATTTTAAT
15054215 AAAAATATTAAAACTAGAAAA
1 AAAAATATTAAAACTA-AAAA
* *
15054236 AAAATTATTAAAATTAAAAA
1 AAAAATATTAAAACTAAAAA
15054256 AA
1 AA
15054258 TAAAAATCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAATATTAAAACTAAAAA
Found at i:15054319 original size:9 final size:9
Alignment explanation
Indices: 15054235--15054319 Score: 54
Period size: 9 Copynumber: 9.4 Consensus size: 9
15054225 AAACTAGAAA
15054235 AAAAATTAT
1 AAAAATTAT
*
15054244 TAAAATTA-
1 AAAAATTAT
15054252 AAAAA--AT
1 AAAAATTAT
15054259 AAAAATCGTA-
1 AAAAAT--TAT
*
15054269 AAAAAATAT
1 AAAAATTAT
*
15054278 AAAAATTGT
1 AAAAATTAT
*
15054287 AAAATTTCAT
1 AAAAATT-AT
15054297 AAAAATCGTA-
1 AAAAAT--TAT
15054307 AAAAATTAT
1 AAAAATTAT
15054316 AAAA
1 AAAA
15054320 TTTTATAAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
6 1 0.02
7 5 0.09
8 8 0.14
9 24 0.41
10 17 0.29
11 2 0.03
12 1 0.02
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.27
Consensus pattern (9 bp):
AAAAATTAT
Found at i:15054359 original size:19 final size:18
Alignment explanation
Indices: 15054331--15054388 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
15054321 TTTATAAAGC
15054331 TGTAAGAAAAATATAGAAAA
1 TGTAA-AAAAATATA-AAAA
*
15054351 TGTAAAAAAATATAAAAT
1 TGTAAAAAAATATAAAAA
15054369 TCGTAAAAAAATATAAAAA
1 T-GTAAAAAAATATAAAAA
15054388 T
1 T
15054389 TATCGTATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
18 4 0.11
19 26 0.74
20 5 0.14
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.24
Consensus pattern (18 bp):
TGTAAAAAAATATAAAAA
Found at i:15063684 original size:24 final size:24
Alignment explanation
Indices: 15063654--15063703 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
15063644 AAACAAGAAG
15063654 TAGTTTTAAACTAAACTTTCTTGC
1 TAGTTTTAAACTAAACTTTCTTGC
15063678 TAGTTTTAAACTAAACTTTCTTGC
1 TAGTTTTAAACTAAACTTTCTTGC
15063702 TA
1 TA
15063704 ACATAAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (24 bp):
TAGTTTTAAACTAAACTTTCTTGC
Found at i:15064465 original size:15 final size:15
Alignment explanation
Indices: 15064447--15064492 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
15064437 AGTTAGAGTT
15064447 AGTTAAAACATAACC
1 AGTTAAAACATAACC
15064462 AGTTAAAACATAACC
1 AGTTAAAACATAACC
*
15064477 AGGTAAAACATAACC
1 AGTTAAAACATAACC
15064492 A
1 A
15064493 CTCCTCATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.54, C:0.20, G:0.09, T:0.17
Consensus pattern (15 bp):
AGTTAAAACATAACC
Found at i:15066408 original size:9 final size:9
Alignment explanation
Indices: 15066394--15066440 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
15066384 ACCCACATAA
15066394 TTTTTTTA-
1 TTTTTTTAT
15066402 TTTTTTTAT
1 TTTTTTTAT
15066411 TTTTTTCGTAT
1 TTTTTT--TAT
*
15066422 TTTTTGTACT
1 TTTTTTTA-T
15066432 TTTTTTTAT
1 TTTTTTTAT
15066441 CACTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
8 8 0.24
9 9 0.27
10 8 0.24
11 8 0.24
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.81
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:15067225 original size:24 final size:24
Alignment explanation
Indices: 15067195--15067244 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
15067185 AAACAAGAAG
15067195 TAGTTTTAAACTAAACTTTCTTGC
1 TAGTTTTAAACTAAACTTTCTTGC
15067219 TAGTTTTAAACTAAACTTTCTTGC
1 TAGTTTTAAACTAAACTTTCTTGC
15067243 TA
1 TA
15067245 ACATAAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (24 bp):
TAGTTTTAAACTAAACTTTCTTGC
Found at i:15071075 original size:48 final size:46
Alignment explanation
Indices: 15071013--15071157 Score: 186
Period size: 48 Copynumber: 3.1 Consensus size: 46
15071003 AAATTAATAT
*
15071013 GAAAAAAATGTAAATTAAAATGGAAAGAAAGATAATCTAAATGAAATGA
1 GAAAAAAAT-TAAATTAAAATGGAAA-AAA-ATAATTTAAATGAAATGA
* *
15071062 GAAAACAATTAAATTTAAATGG-AAAAAATAATTTAAATGAAATGA
1 GAAAAAAATTAAATTAAAATGGAAAAAAATAATTTAAATGAAATGA
* *
15071107 GAAAAAAATTATATTTAAAAGGGAAAAAATATAATTTAAATGAAATG-
1 GAAAAAAATTA-AATTAAAATGGAAAAAA-ATAATTTAAATGAAATGA
15071154 GAAA
1 GAAA
15071158 TGGAAATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
45 27 0.31
46 11 0.13
47 11 0.13
48 29 0.34
49 8 0.09
ACGTcount: A:0.61, C:0.01, G:0.14, T:0.24
Consensus pattern (46 bp):
GAAAAAAATTAAATTAAAATGGAAAAAAATAATTTAAATGAAATGA
Found at i:15071082 original size:22 final size:21
Alignment explanation
Indices: 15071056--15071149 Score: 75
Period size: 21 Copynumber: 4.3 Consensus size: 21
15071046 AATCTAAATG
15071056 AAATGAGAAAACAATTAAATTT
1 AAATGAGAAAA-AATTAAATTT
* *
15071078 AAATGGAAAAAATAATTTAAA-TG
1 AAAT-GAGAAAA-AA-TTAAATTT
*
15071101 AAATGAGAAAAAAATTATATTT
1 AAATGAG-AAAAAATTAAATTT
* *
15071123 AAAAGGGAAAAAA-TATAATTT
1 AAATGAGAAAAAATTA-AATTT
15071144 AAATGA
1 AAATGA
15071150 AATGGAAATG
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
20 2 0.04
21 18 0.32
22 14 0.25
23 17 0.30
24 5 0.09
ACGTcount: A:0.61, C:0.01, G:0.12, T:0.27
Consensus pattern (21 bp):
AAATGAGAAAAAATTAAATTT
Found at i:15071104 original size:45 final size:47
Alignment explanation
Indices: 15071013--15071157 Score: 188
Period size: 45 Copynumber: 3.1 Consensus size: 47
15071003 AAATTAATAT
* *
15071013 GAAAAAAATGTAAATTAAAATGGAAAGAAAGATAATCTAAATGAAATGA
1 GAAAAAAAT-TAAATTTAAATGGAAA-AAAGATAATTTAAATGAAATGA
*
15071062 GAAAACAATTAAATTTAAATGG-AAAAA-ATAATTTAAATGAAATGA
1 GAAAAAAATTAAATTTAAATGGAAAAAAGATAATTTAAATGAAATGA
* * *
15071107 GAAAAAAATTATATTTAAAAGGGAAAAAATATAATTTAAATGAAATG-
1 GAAAAAAATTAAATTT-AAATGGAAAAAAGATAATTTAAATGAAATGA
15071154 GAAA
1 GAAA
15071158 TGGAAATGGA
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
45 31 0.36
46 8 0.09
47 11 0.13
48 29 0.33
49 8 0.09
ACGTcount: A:0.61, C:0.01, G:0.14, T:0.24
Consensus pattern (47 bp):
GAAAAAAATTAAATTTAAATGGAAAAAAGATAATTTAAATGAAATGA
Found at i:15071159 original size:6 final size:5
Alignment explanation
Indices: 15071144--15071305 Score: 94
Period size: 5 Copynumber: 29.6 Consensus size: 5
15071134 AATATAATTT
15071144 AAATG AAATGG AAATGG AAATGG AAATG AAATAG AAATAG AAATAG AAATG
1 AAATG AAAT-G AAAT-G AAAT-G AAATG AAAT-G AAAT-G AAAT-G AAATG
* * * * *
15071195 AAATG AAATAG AATATG ACTATG AAATA AAATG TAATTTG TAATG AATAAG
1 AAATG AAAT-G AA-ATG A-AATG AAATG AAATG -AA-ATG AAATG AA-ATG
* *
15071246 AAGTG AAATG AAATG TTAAATG AATATG AAATG AAATG ATAAT- -TATG
1 AAATG AAATG AAATG --AAATG AA-ATG AAATG AAATG A-AATG AAATG
*
15071293 AAATG GAATG AAA
1 AAATG AAATG AAA
15071306 GTTTAAATGA
Statistics
Matches: 127, Mismatches: 16, Indels: 28
0.74 0.09 0.16
Matches are distributed among these distances:
3 2 0.02
5 58 0.46
6 58 0.46
7 9 0.07
ACGTcount: A:0.55, C:0.01, G:0.20, T:0.25
Consensus pattern (5 bp):
AAATG
Found at i:15071165 original size:12 final size:11
Alignment explanation
Indices: 15071144--15071284 Score: 80
Period size: 12 Copynumber: 12.5 Consensus size: 11
15071134 AATATAATTT
*
15071144 AAATGAAATGG
1 AAATGAAATAG
*
15071155 AAATGGAAATGG
1 AAAT-GAAATAG
15071167 AAATGAAATAG
1 AAATGAAATAG
15071178 AAATAGAAATAG
1 AAAT-GAAATAG
15071190 AAATGAAAT-G
1 AAATGAAATAG
15071200 AAAT-AGAATATG
1 AAATGA-AATA-G
*
15071212 ACTATGAAATA-
1 A-AATGAAATAG
* *
15071223 AAATGTAATTTG
1 AAATG-AAATAG
*
15071235 TAATG-AATAAG
1 AAATGAAAT-AG
*
15071246 AAGTGAAAT-G
1 AAATGAAATAG
15071256 AAATGTTAAAT-G
1 AAATG--AAATAG
15071268 AATATGAAAT-G
1 AA-ATGAAATAG
15071279 AAATGA
1 AAATGA
15071285 TAATTATGAA
Statistics
Matches: 105, Mismatches: 11, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
9 1 0.01
10 22 0.21
11 34 0.32
12 38 0.36
13 9 0.09
14 1 0.01
ACGTcount: A:0.55, C:0.01, G:0.20, T:0.24
Consensus pattern (11 bp):
AAATGAAATAG
Found at i:15071171 original size:23 final size:22
Alignment explanation
Indices: 15071144--15071207 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 22
15071134 AATATAATTT
* *
15071144 AAATGAAATGGAAATGGAAATGG
1 AAATGAAAT-GAAATAGAAATAG
15071167 AAATGAAATAGAAATAGAAATAG
1 AAATGAAAT-GAAATAGAAATAG
15071190 AAATGAAATGAAATAGAA
1 AAATGAAATGAAATAGAA
15071208 TATGACTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
22 9 0.24
23 29 0.76
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (22 bp):
AAATGAAATGAAATAGAAATAG
Found at i:15071220 original size:28 final size:27
Alignment explanation
Indices: 15071144--15071284 Score: 110
Period size: 28 Copynumber: 5.0 Consensus size: 27
15071134 AATATAATTT
15071144 AAAT-GAAATGGAA-ATGGAAATGGAAATG
1 AAATAGAAAT-GAATAT-GAAAT-GAAATG
15071172 AAATAGAAATAGAA-ATAGAAATGAAATG
1 AAATAGAAAT-GAATAT-GAAATGAAATG
* *
15071200 AAATAGAATATGACTATGAAATAAAATG
1 AAATAGAA-ATGAATATGAAATGAAATG
* * * * *
15071228 TAATTTGTAATGAATAAGAAGTGAAATG
1 -AAATAGAAATGAATATGAAATGAAATG
15071256 AAAT-GTTAAATGAATATGAAATGAAATG
1 AAATAG--AAATGAATATGAAATGAAATG
15071284 A
1 A
15071285 TAATTATGAA
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.01
27 3 0.03
28 64 0.70
29 24 0.26
ACGTcount: A:0.55, C:0.01, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATAGAAATGAATATGAAATGAAATG
Found at i:15071401 original size:20 final size:20
Alignment explanation
Indices: 15071356--15071416 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
15071346 AACTAAAATG
*
15071356 AAAAA-AAATTGAAATGAGAA
1 AAAAATAAATTTAAATG-GAA
*
15071376 ATAAATAAATTTAAATGGAA
1 AAAAATAAATTTAAATGGAA
15071396 AAAAATTAAA-TTAAATGGAA
1 AAAAA-TAAATTTAAATGGAA
15071416 A
1 A
15071417 TGGAAATGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 22 0.61
21 14 0.39
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (20 bp):
AAAAATAAATTTAAATGGAA
Found at i:15071419 original size:6 final size:6
Alignment explanation
Indices: 15071408--15071440 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
15071398 AAATTAAATT
15071408 AAATGG AAATGG AAATGG AAAT-G AAAT-G AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
15071441 AAAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.55, C:0.00, G:0.27, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:15078778 original size:22 final size:22
Alignment explanation
Indices: 15078716--15078808 Score: 105
Period size: 22 Copynumber: 4.1 Consensus size: 22
15078706 TTACAACTAT
*
15078716 TAAACAGAGAGCACTAAAGTGC
1 TAAACAGAGAGCACTAATGTGC
* *
15078738 TATACAGAGAGCACGAATGTGC
1 TAAACAGAGAGCACTAATGTGC
*
15078760 TAAACAGAGAGCACTAATGTTTC
1 TAAACAGAGAGCACTAATG-TGC
* *
15078783 AGTAATCGGAGAGCACTAATGTGC
1 --TAAACAGAGAGCACTAATGTGC
15078807 TA
1 TA
15078809 TTTATAAGAG
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
22 38 0.64
23 2 0.03
24 2 0.03
25 17 0.29
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (22 bp):
TAAACAGAGAGCACTAATGTGC
Found at i:15079754 original size:5 final size:5
Alignment explanation
Indices: 15079732--15079776 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
15079722 TTACCTATTT
*
15079732 ATATA ATATA TATATA ATTTA ATATA ATATA ATAT- ATAATA ATAT
1 ATATA ATATA -ATATA ATATA ATATA ATATA ATATA AT-ATA ATAT
15079777 TCTTATTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 2 0.06
5 26 0.74
6 7 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
ATATA
Found at i:15081352 original size:16 final size:17
Alignment explanation
Indices: 15081321--15081353 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15081311 TTCATAAGTA
15081321 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
15081338 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
15081354 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:15081708 original size:46 final size:46
Alignment explanation
Indices: 15081633--15082044 Score: 488
Period size: 46 Copynumber: 9.0 Consensus size: 46
15081623 TTATCTTTGA
* * * * * *
15081633 CATGATGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
15081679 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * ** *
15081725 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCGGC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
15081771 CATGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** * **
15081817 CACT-CCGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCGGT
1 CA-TGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
15081863 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-TCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT-GT
* * ** *
15081909 CATGTTGCCATGGTATTTTTCAACCATGGTGTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * ** *
15081955 CATGTTGTCATGGTATCTTTCAATCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
15082001 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
15082045 TTCAGAGAGC
Statistics
Matches: 320, Mismatches: 41, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
45 5 0.02
46 313 0.98
47 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:15081975 original size:25 final size:25
Alignment explanation
Indices: 15081947--15082022 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
15081937 GTGTTACACA
15081947 TTTCATATCATGTTGTCATGGTATC
1 TTTCATATCATGTTGTCATGGTATC
*
15081972 TTTCA-ATCATG--GTC-T--TACAC
1 TTTCATATCATGTTGTCATGGTA-TC
* *
15081992 ATTTCATATCAGGTTGCCATGGTATC
1 -TTTCATATCATGTTGTCATGGTATC
15082018 TTTCA
1 TTTCA
15082023 ACCATGGTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 6 0.15
22 8 0.21
24 8 0.21
25 11 0.28
26 1 0.03
27 2 0.05
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43
Consensus pattern (25 bp):
TTTCATATCATGTTGTCATGGTATC
Found at i:15083688 original size:19 final size:21
Alignment explanation
Indices: 15083660--15083699 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
15083650 CACACCATAA
15083660 TTTTCCC-TTTTCT-TCTTTC
1 TTTTCCCTTTTTCTCTCTTTC
*
15083679 TTTTCTCTTTTTCTCTCTTTC
1 TTTTCCCTTTTTCTCTCTTTC
15083700 CTTCCCGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTCCCTTTTTCTCTCTTTC
Found at i:15083966 original size:21 final size:20
Alignment explanation
Indices: 15083924--15083971 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
15083914 TATAATTATT
15083924 TAATTAATAAATATATTTTA
1 TAATTAATAAATATATTTTA
15083944 TAATTAATAAATATCCA-TTTA
1 TAATTAATAAATAT--ATTTTA
15083965 TAATTAA
1 TAATTAA
15083972 ATACTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.54
21 11 0.42
22 1 0.04
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (20 bp):
TAATTAATAAATATATTTTA
Found at i:15085058 original size:24 final size:25
Alignment explanation
Indices: 15085026--15085072 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
15085016 GGAGCTACCC
15085026 ATTATTGGCTCGCATGAGCTTCCTA
1 ATTATTGGCTCGCATGAGCTTCCTA
**
15085051 ATTA-TGGCTCTTATGAGCTTCC
1 ATTATTGGCTCGCATGAGCTTCC
15085073 CGTTATACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
ATTATTGGCTCGCATGAGCTTCCTA
Found at i:15087573 original size:13 final size:13
Alignment explanation
Indices: 15087557--15087589 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15087547 TTTAATTAAA
*
15087557 TTAGTTAATTAGT
1 TTAGATAATTAGT
15087570 TTAGATAATTAGT
1 TTAGATAATTAGT
15087583 TTA-ATAA
1 TTAGATAA
15087590 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:15089793 original size:10 final size:10
Alignment explanation
Indices: 15089778--15089807 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
15089768 GCACCTGAAC
15089778 CGCCACCTCT
1 CGCCACCTCT
15089788 CGCCACCTCT
1 CGCCACCTCT
15089798 CGCCACCTCT
1 CGCCACCTCT
15089808 GCGCATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.60, G:0.10, T:0.20
Consensus pattern (10 bp):
CGCCACCTCT
Found at i:15094675 original size:26 final size:28
Alignment explanation
Indices: 15094646--15094710 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 28
15094636 TAAATAAAAA
15094646 AATAGATATGAAATAA-TA-ATATATAT
1 AATAGATATGAAATAATTATATATATAT
* ***
15094672 AATATATATGTTTTAATTATATATATAT
1 AATAGATATGAAATAATTATATATATAT
15094700 AGATAGATATG
1 A-ATAGATATG
15094711 TATATAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 12 0.39
27 2 0.06
28 9 0.29
29 8 0.26
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (28 bp):
AATAGATATGAAATAATTATATATATAT
Found at i:15094784 original size:3 final size:3
Alignment explanation
Indices: 15094776--15094809 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
15094766 AAAAACAATT
*
15094776 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15094810 AAAAATTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:15098460 original size:34 final size:34
Alignment explanation
Indices: 15098417--15098484 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
15098407 TATGTAACTG
15098417 GGGATAAAGCTGAGCAAGGAAATAGATTGAGACA
1 GGGATAAAGCTGAGCAAGGAAATAGATTGAGACA
15098451 GGGATAAAGCTGAGCAAGGAAATAGATTGAGACA
1 GGGATAAAGCTGAGCAAGGAAATAGATTGAGACA
15098485 ACTTTGGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.09, G:0.32, T:0.15
Consensus pattern (34 bp):
GGGATAAAGCTGAGCAAGGAAATAGATTGAGACA
Found at i:15098481 original size:17 final size:17
Alignment explanation
Indices: 15098427--15098481 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
15098417 GGGATAAAGC
15098427 TGAGCAAGGAAATAGAT
1 TGAGCAAGGAAATAGAT
* *
15098444 TGAGACAGGGATAA-AG-C
1 TGAG-CAAGGA-AATAGAT
15098461 TGAGCAAGGAAATAGAT
1 TGAGCAAGGAAATAGAT
15098478 TGAG
1 TGAG
15098482 ACAACTTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
15 2 0.07
16 7 0.23
17 12 0.40
18 7 0.23
19 2 0.07
ACGTcount: A:0.44, C:0.07, G:0.33, T:0.16
Consensus pattern (17 bp):
TGAGCAAGGAAATAGAT
Found at i:15099223 original size:16 final size:15
Alignment explanation
Indices: 15099180--15099224 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
15099170 ATATCGGTTG
*
15099180 TTCTAAACATAGTTA
1 TTCTAAACATAATTA
*
15099195 TTTTGAAACATAATTA
1 TTCT-AAACATAATTA
15099211 TTCTAAACAATAAT
1 TTCTAAAC-ATAAT
15099225 GATTTCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.40
Consensus pattern (15 bp):
TTCTAAACATAATTA
Found at i:15105406 original size:2 final size:2
Alignment explanation
Indices: 15105395--15105428 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
15105385 TTAGCTGGAT
*
15105395 TA TA -A TA TA TA TT TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15105429 CAGTTGATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:15107497 original size:14 final size:14
Alignment explanation
Indices: 15107480--15107506 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15107470 TATAAAATCT
15107480 AAATTTTAAAAATA
1 AAATTTTAAAAATA
15107494 AAATTTTAAAAAT
1 AAATTTTAAAAAT
15107507 CCAATAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATTTTAAAAATA
Found at i:15107718 original size:19 final size:18
Alignment explanation
Indices: 15107669--15107783 Score: 64
Period size: 17 Copynumber: 6.6 Consensus size: 18
15107659 GAATTTTAAA
15107669 TATATATTTTTTAATATT
1 TATATATTTTTTAATATT
* * *
15107687 TGTAGCATTTTTTAATTTT
1 TATA-TATTTTTTAATATT
15107706 TATATATTATTTTTAA-ATT
1 TATATA-T-TTTTTAATATT
* * *
15107725 T-TAAATTTTATAATAAAT
1 TATATATTTTTTAAT-ATT
15107743 T-TAT-TTTTTTAAT-TT
1 TATATATTTTTTAATATT
* * *
15107758 TTTATATTATAT-ATATT
1 TATATATTTTTTAATATT
15107775 TATAT-TTTT
1 TATATATTTT
15107784 AATCAATATA
Statistics
Matches: 73, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
15 2 0.03
16 14 0.19
17 19 0.26
18 12 0.16
19 19 0.26
20 7 0.10
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (18 bp):
TATATATTTTTTAATATT
Found at i:15107735 original size:20 final size:20
Alignment explanation
Indices: 15107695--15107735 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15107685 TTTGTAGCAT
* *
15107695 TTTTTAATTTTTATATATTA
1 TTTTTAAATTTTAAATATTA
*
15107715 TTTTTAAATTTTAAATTTTA
1 TTTTTAAATTTTAAATATTA
15107735 T
1 T
15107736 AATAAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTAAATTTTAAATATTA
Found at i:15107760 original size:27 final size:30
Alignment explanation
Indices: 15107695--15107786 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 30
15107685 TTTGTAGCAT
*
15107695 TTTTTAA-TTTTTATATAT-TATTTTTA-A
1 TTTTTAATTTTTTATATATATATATTTATA
* * *
15107722 ATTTTAA-ATTTTATA-ATA-A-ATTTATT
1 TTTTTAATTTTTTATATATATATATTTATA
15107748 TTTTTAATTTTTTATATTATATATATTTATA
1 TTTTTAATTTTTTATA-TATATATATTTATA
15107779 TTTTTAAT
1 TTTTTAAT
15107787 CAATATAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
25 4 0.08
26 9 0.18
27 20 0.39
29 3 0.06
30 1 0.02
31 14 0.27
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTTTAATTTTTTATATATATATATTTATA
Found at i:15107908 original size:11 final size:11
Alignment explanation
Indices: 15107892--15107918 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15107882 ACCAACGTTT
15107892 ATCAATAGTCG
1 ATCAATAGTCG
15107903 ATCAATAGTCG
1 ATCAATAGTCG
15107914 ATCAA
1 ATCAA
15107919 AATAAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (11 bp):
ATCAATAGTCG
Found at i:15114312 original size:14 final size:13
Alignment explanation
Indices: 15114274--15114324 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 13
15114264 TAATAGTTTT
15114274 AAATATTTTAATTA
1 AAATATTTT-ATTA
*
15114288 ATAAAATTTTATTA
1 A-AATATTTTATTA
*
15114302 AAATA-TAT-TTA
1 AAATATTTTATTA
15114313 AAATATTTTATT
1 AAATATTTTATT
15114325 GAAAGTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 8 0.27
12 4 0.13
13 5 0.17
14 6 0.20
15 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AAATATTTTATTA
Found at i:15129267 original size:5 final size:5
Alignment explanation
Indices: 15129240--15129298 Score: 64
Period size: 5 Copynumber: 11.0 Consensus size: 5
15129230 TGTTAAAATA
* *
15129240 TATAT ATATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT
1 TATAT -TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT
15129289 TATAT TATAT
1 TATAT TATAT
15129299 AAATAAGTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
5 31 0.67
6 11 0.24
7 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:15129277 original size:10 final size:9
Alignment explanation
Indices: 15129237--15129299 Score: 64
Period size: 8 Copynumber: 7.3 Consensus size: 9
15129227 ATGTGTTAAA
15129237 ATATA-TAT
1 ATATATTAT
*
15129245 ATATATTAA
1 ATATATTAT
15129254 AT-TATTAT
1 ATATATTAT
15129262 -TATATTAT
1 ATATATTAT
15129270 AGTATATTAT
1 A-TATATTAT
15129280 AT-TA-TAT
1 ATATATTAT
15129287 ATTATATTAT
1 A-TATATTAT
15129297 ATA
1 ATA
15129300 AATAAGTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
7 5 0.11
8 19 0.41
9 9 0.20
10 13 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATTAT
Found at i:15130637 original size:18 final size:19
Alignment explanation
Indices: 15130614--15130652 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
15130604 ATATATAGAT
15130614 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
15130632 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
15130651 AT
1 AT
15130653 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:15131002 original size:39 final size:39
Alignment explanation
Indices: 15130892--15131026 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
15130882 GACCTCGAGT
* * * *
15130892 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
15130933 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
15130971 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
15131010 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
15131027 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:15131171 original size:13 final size:14
Alignment explanation
Indices: 15131140--15131175 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
15131130 GCTATTGGAA
15131140 TGAAA-TGAGAAAT
1 TGAAATTGAGAAAT
15131153 TG-AATTGA-AAAT
1 TGAAATTGAGAAAT
15131165 TGAAATTGAGA
1 TGAAATTGAGA
15131176 TATGAGATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 8 0.40
13 11 0.55
14 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (14 bp):
TGAAATTGAGAAAT
Found at i:15131174 original size:26 final size:25
Alignment explanation
Indices: 15131140--15131189 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
15131130 GCTATTGGAA
15131140 TGAAATGAGAAATTGA-ATTGAAAAT
1 TGAAATGAGAAA-TGAGATTGAAAAT
*
15131165 TGAAATTGAGATATGAGATTGAAAA
1 TGAAA-TGAGAAATGAGATTGAAAA
15131190 CATGAACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (25 bp):
TGAAATGAGAAATGAGATTGAAAAT
Found at i:15133059 original size:5 final size:5
Alignment explanation
Indices: 15133049--15133076 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
15133039 GATCTTCTTC
15133049 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
15133077 CTTCTTTCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:15133922 original size:31 final size:31
Alignment explanation
Indices: 15133884--15133946 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
15133874 TTTGACTGAG
15133884 TATGTAGCTTCACAAAGAATAAGAATAATAT
1 TATGTAGCTTCACAAAGAATAAGAATAATAT
15133915 TATGTAGCTTCACAAAGAATAAGAATAATAT
1 TATGTAGCTTCACAAAGAATAAGAATAATAT
15133946 T
1 T
15133947 CCATTGTAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.30
Consensus pattern (31 bp):
TATGTAGCTTCACAAAGAATAAGAATAATAT
Found at i:15146259 original size:8 final size:8
Alignment explanation
Indices: 15146246--15146274 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
15146236 TTATGTTTAG
15146246 TATATTAT
1 TATATTAT
15146254 TATATTAT
1 TATATTAT
15146262 TATATTAT
1 TATATTAT
15146270 TATAT
1 TATAT
15146275 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:15146307 original size:5 final size:5
Alignment explanation
Indices: 15146297--15146337 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
15146287 TTATGTTTTA
15146297 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
15146338 AAACTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:15147628 original size:15 final size:15
Alignment explanation
Indices: 15147608--15147664 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
15147598 CGATGAATTT
15147608 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
15147623 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
15147638 ATTGAATTTATATTG
1 ATTGAATTTATATTG
15147653 ATTGAA-TTATAT
1 ATTGAATTTATAT
15147665 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:15148075 original size:23 final size:23
Alignment explanation
Indices: 15148049--15148123 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 23
15148039 AGGAACTTTA
15148049 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
15148072 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* **
15148093 TGTGTCGT-TTT-AGGCACTTTA
1 TGTGTCGTATTTCAGGCACCTCG
15148114 TGTGTCGTAT
1 TGTGTCGTAT
15148124 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
21 35 0.76
22 2 0.04
23 9 0.20
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:15149815 original size:18 final size:20
Alignment explanation
Indices: 15149789--15149825 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
15149779 TACATGTGTT
15149789 ATATGTGAT-T-TTTAAATG
1 ATATGTGATATATTTAAATG
*
15149807 ATATTTGATATATTTAAAT
1 ATATGTGATATATTTAAAT
15149826 TTTAAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 1 0.06
20 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (20 bp):
ATATGTGATATATTTAAATG
Found at i:15153733 original size:35 final size:35
Alignment explanation
Indices: 15153689--15153818 Score: 145
Period size: 35 Copynumber: 3.7 Consensus size: 35
15153679 TCCTCATTGA
*
15153689 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
** * **
15153724 AATGTCATACCTACTTTTCTTAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* *
15153759 AATACCATACCTACGTTTCACAACTCAATATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
** *
15153794 GGTACCATACCTACGTTTCACAACT
1 AATACCATACCTACATTTCACAACT
15153819 TTTCTATGGA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
34 3 0.04
35 77 0.96
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:15156793 original size:30 final size:30
Alignment explanation
Indices: 15156734--15156791 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
15156724 GATTAATTAC
* * *
15156734 TTTTATATGAATAATAAACTATTACAAAAT
1 TTTTATATGAATAAAAAACAAATACAAAAT
15156764 TTTTATATG-ATAAAAAACAAATACAAAA
1 TTTTATATGAATAAAAAACAAATACAAAA
15156792 ATAATTTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (30 bp):
TTTTATATGAATAAAAAACAAATACAAAAT
Found at i:15157265 original size:63 final size:63
Alignment explanation
Indices: 15157162--15157291 Score: 208
Period size: 63 Copynumber: 2.1 Consensus size: 63
15157152 TTAAAATATC
** *
15157162 AATG-GCGATGATATCGAAAATCACATTGGCAGACTCAATGTCGAGATAGGGGTTTGGATTCA
1 AATGCGCGATGATATCGAAAATCACATTAACAGACTCAATGTCGAGATAGGGGTTTAGATTCA
* *
15157224 AATGCGCGATGATATCGAAAGTCACATTAACAGGCTCAATGTCGAGATAGGGGTTTAGATTCA
1 AATGCGCGATGATATCGAAAATCACATTAACAGACTCAATGTCGAGATAGGGGTTTAGATTCA
15157287 AATGC
1 AATGC
15157292 AGTGATAGCA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
62 4 0.06
63 58 0.94
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (63 bp):
AATGCGCGATGATATCGAAAATCACATTAACAGACTCAATGTCGAGATAGGGGTTTAGATTCA
Found at i:15165576 original size:19 final size:20
Alignment explanation
Indices: 15165533--15165576 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
15165523 TAATTTAGTC
15165533 CTTA-TTTCCATAAAATTTCA
1 CTTATTTTCCAT-AAATTTCA
15165553 C--ATTTTCCAT-AATTTCA
1 CTTATTTTCCATAAATTTCA
15165570 CTTATTT
1 CTTATTT
15165577 AATACTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
17 8 0.38
18 1 0.05
19 11 0.52
20 1 0.05
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (20 bp):
CTTATTTTCCATAAATTTCA
Found at i:15166701 original size:11 final size:12
Alignment explanation
Indices: 15166674--15166700 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15166664 CCAACATTTC
15166674 TTTTCTTTTATT
1 TTTTCTTTTATT
15166686 TTTTCTTTTATT
1 TTTTCTTTTATT
15166698 TTT
1 TTT
15166701 CACTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTATT
Found at i:15176183 original size:106 final size:106
Alignment explanation
Indices: 15175998--15176209 Score: 424
Period size: 106 Copynumber: 2.0 Consensus size: 106
15175988 AAATGAAAGA
15175998 TAGTTTATTTGTTTGGATATGTTCAATTAGTCGGAATAGAGTTAAGATGAACCTGTAGACATAGC
1 TAGTTTATTTGTTTGGATATGTTCAATTAGTCGGAATAGAGTTAAGATGAACCTGTAGACATAGC
15176063 TTTATACAATATTATTTTTGCTGTCAAACCTTAGAGTTGGT
66 TTTATACAATATTATTTTTGCTGTCAAACCTTAGAGTTGGT
15176104 TAGTTTATTTGTTTGGATATGTTCAATTAGTCGGAATAGAGTTAAGATGAACCTGTAGACATAGC
1 TAGTTTATTTGTTTGGATATGTTCAATTAGTCGGAATAGAGTTAAGATGAACCTGTAGACATAGC
15176169 TTTATACAATATTATTTTTGCTGTCAAACCTTAGAGTTGGT
66 TTTATACAATATTATTTTTGCTGTCAAACCTTAGAGTTGGT
15176210 CGGTTGGACA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (106 bp):
TAGTTTATTTGTTTGGATATGTTCAATTAGTCGGAATAGAGTTAAGATGAACCTGTAGACATAGC
TTTATACAATATTATTTTTGCTGTCAAACCTTAGAGTTGGT
Found at i:15192522 original size:8 final size:7
Alignment explanation
Indices: 15192495--15192520 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15192485 TTTCTCAATT
15192495 AAAAAGA
1 AAAAAGA
15192502 AAAAAGA
1 AAAAAGA
15192509 AAAAAGA
1 AAAAAGA
15192516 AAAAA
1 AAAAA
15192521 AGGGCGAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:15200291 original size:13 final size:14
Alignment explanation
Indices: 15200270--15200298 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
15200260 TGAAAAATGG
15200270 ATTAGAAAATATTT
1 ATTAGAAAATATTT
15200284 ATTA-AAAATATTT
1 ATTAGAAAATATTT
15200297 AT
1 AT
15200299 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:15203626 original size:52 final size:49
Alignment explanation
Indices: 15203541--15203907 Score: 449
Period size: 46 Copynumber: 7.6 Consensus size: 49
15203531 TTTGAGTACT
* ** *
15203541 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15203587 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
15203639 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15203685 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
15203737 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
15203783 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* ** *
15203835 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15203881 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
15203908 GCTGCACTTA
Statistics
Matches: 291, Mismatches: 12, Indels: 36
0.86 0.04 0.11
Matches are distributed among these distances:
46 154 0.53
48 2 0.01
49 5 0.02
50 3 0.01
52 127 0.44
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:15203661 original size:98 final size:98
Alignment explanation
Indices: 15203541--15203896 Score: 604
Period size: 98 Copynumber: 3.6 Consensus size: 98
15203531 TTTGAGTACT
* *
15203541 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
15203606 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
15203639 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
15203704 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
15203737 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
15203802 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * * *
15203835 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
15203897 AGTGATAAGT
Statistics
Matches: 246, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 246 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (98 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:15203919 original size:37 final size:37
Alignment explanation
Indices: 15203871--15204016 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
15203861 GATAGCTTTA
*
15203871 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
15203908 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
15203945 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
15203982 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15204017 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:15205341 original size:49 final size:50
Alignment explanation
Indices: 15205270--15205366 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
15205260 ACATGTGAAC
* *
15205270 ATGTGATTATGTGATTCTGTGTAAGACCATAGCTGGGCTGTGGCATCGGT
1 ATGTGATTATGTGATTCTGTGTAAGACCATAGCTGGACTATGGCATCGGT
*
15205320 ATGTGATT-TGTGATTAC-GTGTAAGACCATAGTTGGACTATGGCATCG
1 ATGTGATTATGTGATT-CTGTGTAAGACCATAGCTGGACTATGGCATCG
15205367 AGAAAACGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
49 34 0.79
50 9 0.21
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.34
Consensus pattern (50 bp):
ATGTGATTATGTGATTCTGTGTAAGACCATAGCTGGACTATGGCATCGGT
Found at i:15208580 original size:52 final size:49
Alignment explanation
Indices: 15208495--15208861 Score: 449
Period size: 46 Copynumber: 7.6 Consensus size: 49
15208485 TTTGAGTACT
* ** *
15208495 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15208541 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
15208593 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15208639 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
15208691 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
15208737 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* ** *
15208789 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
15208835 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
15208862 GCTGCACTTA
Statistics
Matches: 291, Mismatches: 12, Indels: 36
0.86 0.04 0.11
Matches are distributed among these distances:
46 154 0.53
48 2 0.01
49 5 0.02
50 3 0.01
52 127 0.44
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:15208615 original size:98 final size:98
Alignment explanation
Indices: 15208495--15208850 Score: 604
Period size: 98 Copynumber: 3.6 Consensus size: 98
15208485 TTTGAGTACT
* *
15208495 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
15208560 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
15208593 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
15208658 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
15208691 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
15208756 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * * *
15208789 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
15208851 AGTGATAAGT
Statistics
Matches: 246, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 246 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (98 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:15208873 original size:37 final size:37
Alignment explanation
Indices: 15208825--15208970 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
15208815 GATAGCTTTA
*
15208825 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
15208862 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
15208899 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
15208936 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
15208971 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:15209877 original size:15 final size:15
Alignment explanation
Indices: 15209833--15209879 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
15209823 GAATTTATCA
15209833 AATTTATATTGATTG
1 AATTTATATTGATTG
* * * *
15209848 AAATCATTTTAATTG
1 AATTTATATTGATTG
15209863 AATTTATATTGATTG
1 AATTTATATTGATTG
15209878 AA
1 AA
15209880 ATATAATATA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (15 bp):
AATTTATATTGATTG
Found at i:15210288 original size:21 final size:23
Alignment explanation
Indices: 15210246--15210288 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15210236 TAATATTCCA
*
15210246 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTAGGATATTCT
15210269 GGTGTGTTTGGG-AGGA-ATTC
1 GGTGTGTTTGGGTAGGATATTC
15210289 GTGTATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.12, C:0.05, G:0.42, T:0.42
Consensus pattern (23 bp):
GGTGTGTTTGGGTAGGATATTCT
Found at i:15212492 original size:43 final size:43
Alignment explanation
Indices: 15212429--15212513 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
15212419 TAAATTTAAT
* *
15212429 TATAATTATCACATCTTCTATTTAATTAT-AATTTTTTTAATTG
1 TATAATTATCACATCGTCTATTTAATT-TCAAATTTTTTAATTG
*
15212472 TATAATTATCACAAT-GTCTATTTTATTTCAAATTTTTTAATT
1 TATAATTATCAC-ATCGTCTATTTAATTTCAAATTTTTTAATT
15212514 AATAATTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.92
44 2 0.05
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.55
Consensus pattern (43 bp):
TATAATTATCACATCGTCTATTTAATTTCAAATTTTTTAATTG
Found at i:15226783 original size:25 final size:25
Alignment explanation
Indices: 15226748--15226811 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
15226738 CAACGGTGAA
15226748 AAATAAAGTAAATTCGTTCTTCTTTG
1 AAAT-AAGTAAATTCGTTCTTCTTTG
* *
15226774 AAATAAGTAATTTTCGTTTTTCTTTG
1 AAATAAGTAA-ATTCGTTCTTCTTTG
*
15226800 GAATAAG-AAATT
1 AAATAAGTAAATT
15226812 GAATAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 2 0.06
25 8 0.24
26 23 0.70
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (25 bp):
AAATAAGTAAATTCGTTCTTCTTTG
Found at i:15226789 original size:26 final size:26
Alignment explanation
Indices: 15226760--15226811 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15226750 ATAAAGTAAA
*
15226760 TTCGTTCTTCTTTGAAATAAGTAATT
1 TTCGTTCTTCTTTGAAATAAGAAATT
* *
15226786 TTCGTTTTTCTTTGGAATAAGAAATT
1 TTCGTTCTTCTTTGAAATAAGAAATT
15226812 GAATAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (26 bp):
TTCGTTCTTCTTTGAAATAAGAAATT
Found at i:15227161 original size:16 final size:17
Alignment explanation
Indices: 15227128--15227195 Score: 61
Period size: 17 Copynumber: 4.1 Consensus size: 17
15227118 ATATGTCACG
15227128 TTAATAAATAATTTAAAAA
1 TTAATAAA-AA-TTAAAAA
*
15227147 TT-ATAAAAATTAAAAT
1 TTAATAAAAATTAAAAA
*
15227163 TTAATAAAAA-T-AAAG
1 TTAATAAAAATTAAAAA
* *
15227178 TTCATAAAAATTTAAAA
1 TTAATAAAAATTAAAAA
15227195 T
1 T
15227196 AATTAGCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
15 12 0.29
16 10 0.24
17 13 0.31
18 5 0.12
19 2 0.05
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (17 bp):
TTAATAAAAATTAAAAA
Found at i:15230185 original size:113 final size:114
Alignment explanation
Indices: 15229987--15230205 Score: 422
Period size: 113 Copynumber: 1.9 Consensus size: 114
15229977 CCATCAAGAA
*
15229987 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGTCCCGAGTGCCTACCTGA
1 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
15230052 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCT-GTCATTAGAGGAGT
66 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATTAGAGGAGT
15230100 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
1 ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
15230165 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATT
66 ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATT
15230206 CCCATGCTTC
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
113 98 0.94
114 6 0.06
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (114 bp):
ATCTATATTATAAGCTAAAATATTATAGAGGAGTATTTCAAGTCATGACCCGAGTGCCTACCTGA
ATGTGCTTAAAAAGAACATTGACTCTCAGAGGCTCGTCATTAGAGGAGT
Found at i:15233634 original size:22 final size:21
Alignment explanation
Indices: 15233608--15233668 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
15233598 ATCTAAATTC
*
15233608 AAATTAAATAATAAAATTATCT
1 AAATTAAAT-ATAAAATTATAT
* *
15233630 AAATTTAAGTATAAAAATATAT
1 AAA-TTAAATATAAAATTATAT
*
15233652 AAATATTAATATAAAAT
1 AAAT-TAAATATAAAAT
15233669 ATTTTTATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 1 0.03
22 25 0.81
23 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATTAAATATAAAATTATAT
Done.