Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 42 of 318
Found at i:15726529 original size:29 final size:31
Alignment explanation
Indices: 15726473--15726531 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
15726463 AATACATGTA
* *
15726473 TGTATTTGTTTATTATTTAAGTAAATATTAG
1 TGTATTTGATTATTATTTAAATAAATATTAG
*
15726504 TGTATTT-ATTATT-TTTAAATTAATATTA
1 TGTATTTGATTATTATTTAAATAAATATTA
15726532 TATGATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.52
30 5 0.20
31 7 0.28
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (31 bp):
TGTATTTGATTATTATTTAAATAAATATTAG
Found at i:15726685 original size:21 final size:21
Alignment explanation
Indices: 15726625--15726673 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
15726615 ATGCTTGTAT
* *
15726625 TTAAGTATTAAAAGATATTTA
1 TTAATTATAAAAAGATATTTA
15726646 TTAATTATAAAAAGATATTTA
1 TTAATTATAAAAAGATATTTA
15726667 TTAATTA
1 TTAATTA
15726674 AATAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (21 bp):
TTAATTATAAAAAGATATTTA
Found at i:15726916 original size:20 final size:18
Alignment explanation
Indices: 15726883--15726927 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
15726873 AACGAAAAGC
15726883 AGGG-AAAGAAAGAAAGAA
1 AGGGAAAAGAAAG-AAGAA
*
15726901 AGGAGAAAAGAGAGAAGAA
1 AGG-GAAAAGAAAGAAGAA
15726920 AGGGAAAA
1 AGGGAAAA
15726928 TTGAAGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 9 0.38
20 7 0.29
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAGAAGAA
Found at i:15730188 original size:46 final size:48
Alignment explanation
Indices: 15730116--15730218 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
15730106 GACAGGACAG
* * *
15730116 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
* *
15730162 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
15730210 GACAGGAAT
1 GACAGGAAT
15730219 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 25 0.50
47 1 0.02
48 24 0.48
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
Found at i:15730892 original size:18 final size:19
Alignment explanation
Indices: 15730852--15730891 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
15730842 CAAGTATCAG
15730852 AAATAACGGGATTTTGAAA
1 AAATAACGGGATTTTGAAA
15730871 AAATAACGGGATTTTGAAA
1 AAATAACGGGATTTTGAAA
15730890 AA
1 AA
15730892 TCACAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.05, G:0.20, T:0.25
Consensus pattern (19 bp):
AAATAACGGGATTTTGAAA
Found at i:15732044 original size:27 final size:26
Alignment explanation
Indices: 15731984--15732045 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
15731974 ATTTTATTTT
15731984 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
15732010 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
15732038 ATTTTATT
1 ATTTTATT
15732046 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:15738188 original size:28 final size:29
Alignment explanation
Indices: 15738135--15738194 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
15738125 AGATGATTTG
* *
15738135 ATAAAAATATAAATTTAAATATTAAAAAA
1 ATAAAAATATAAATATAAATAGTAAAAAA
*
15738164 ATAAAAA-ATAAA-ATAAATGAGTAAAATA
1 ATAAAAATATAAATATAAAT-AGTAAAAAA
15738192 ATA
1 ATA
15738195 TTTTTTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 5 0.19
28 15 0.56
29 7 0.26
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (29 bp):
ATAAAAATATAAATATAAATAGTAAAAAA
Found at i:15742631 original size:12 final size:12
Alignment explanation
Indices: 15742616--15742713 Score: 56
Period size: 12 Copynumber: 8.2 Consensus size: 12
15742606 CTTCGTCGGG
15742616 GGCTGAGTTGGA
1 GGCTGAGTTGGA
*
15742628 GGCTTG-GTTGGT
1 GGC-TGAGTTGGA
* * *
15742640 GGCTTAGTCGGG
1 GGCTGAGTTGGA
*
15742652 GGCTGAGTTGGT
1 GGCTGAGTTGGA
* * *
15742664 GGCTTAGTCGGG
1 GGCTGAGTTGGA
*
15742676 GGTTGAGTTGGA
1 GGCTGAGTTGGA
* *
15742688 GGTTTG-GTTGGT
1 GG-CTGAGTTGGA
*
15742700 GGCTTAGTTGGA
1 GGCTGAGTTGGA
15742712 GG
1 GG
15742714 TTGAACTGGT
Statistics
Matches: 64, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
11 2 0.03
12 57 0.89
13 5 0.08
ACGTcount: A:0.09, C:0.08, G:0.50, T:0.33
Consensus pattern (12 bp):
GGCTGAGTTGGA
Found at i:15742638 original size:36 final size:36
Alignment explanation
Indices: 15742598--15742668 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
15742588 TGGTGGGTGT
*
15742598 GTTGGTGGCTTCGTCGGGGGCTGAGTTGGAGGCTTG
1 GTTGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTG
*
15742634 GTTGGTGGCTTAGTCGGGGGCTGAGTTGGTGGCTT
1 GTTGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTT
15742669 AGTCGGGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.06, C:0.13, G:0.49, T:0.32
Consensus pattern (36 bp):
GTTGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTG
Found at i:15742643 original size:24 final size:24
Alignment explanation
Indices: 15742588--15742761 Score: 93
Period size: 24 Copynumber: 7.2 Consensus size: 24
15742578 GAGGATGAGA
* * *
15742588 TGGTGGGTGTGTTGGTGGCTTCGT
1 TGGTGGCTGAGTTGGTGGCTTGGT
* * *
15742612 CGGGGGCTGAGTTGGAGGCTTGGT
1 TGGTGGCTGAGTTGGTGGCTTGGT
* * *
15742636 TGGTGGCTTAGTCGGGGGC-TGAGT
1 TGGTGGCTGAGTTGGTGGCTTG-GT
* * *
15742660 TGGTGGCTTAGTCGG-GGGTTGAGT
1 TGGTGGCTGAGTTGGTGGCTTG-GT
* * *
15742684 TGGAGGTTTG-GTTGGTGGCTTAGT
1 TGGTGG-CTGAGTTGGTGGCTTGGT
* * ** *
15742708 TGGAGGTTGAACTGGTGGCTTGGG
1 TGGTGGCTGAGTTGGTGGCTTGGT
* **
15742732 TGGTGGGTGAACTGGTGGCTTGGT
1 TGGTGGCTGAGTTGGTGGCTTGGT
15742756 TGGTGG
1 TGGTGG
15742762 TTGCACTGGC
Statistics
Matches: 120, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
23 7 0.06
24 108 0.90
25 5 0.04
ACGTcount: A:0.07, C:0.09, G:0.51, T:0.33
Consensus pattern (24 bp):
TGGTGGCTGAGTTGGTGGCTTGGT
Found at i:15742724 original size:60 final size:60
Alignment explanation
Indices: 15742600--15742728 Score: 186
Period size: 60 Copynumber: 2.1 Consensus size: 60
15742590 GTGGGTGTGT
* * **
15742600 TGGTGGCTTCGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGGGGCTGAGT
1 TGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
* * * *
15742660 TGGTGGCTTAGTCGGGGGTTGAGTTGGAGGTTTGGTTGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
15742720 TGGTGGCTT
1 TGGTGGCTT
15742729 GGGTGGTGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.09, C:0.10, G:0.48, T:0.33
Consensus pattern (60 bp):
TGGTGGCTTAGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
Found at i:15742736 original size:36 final size:36
Alignment explanation
Indices: 15742660--15742737 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 36
15742650 GGGGCTGAGT
* ** * *
15742660 TGGTGGCTTAGTCGGGGGTTGAGTTGGAGGTTTGGT
1 TGGTGGCTTAGTCGGAGGTTGAACTGGAGGCTTGGG
* *
15742696 TGGTGGCTTAGTTGGAGGTTGAACTGGTGGCTTGGG
1 TGGTGGCTTAGTCGGAGGTTGAACTGGAGGCTTGGG
15742732 TGGTGG
1 TGGTGG
15742738 GTGAACTGGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.09, C:0.06, G:0.50, T:0.35
Consensus pattern (36 bp):
TGGTGGCTTAGTCGGAGGTTGAACTGGAGGCTTGGG
Found at i:15742751 original size:48 final size:48
Alignment explanation
Indices: 15742696--15742794 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
15742686 GAGGTTTGGT
* * *
15742696 TGGTGGCTTAGTTGGAGGTTGAACTGGTGGCTTGGGTGGTGGGTGAAC
1 TGGTGGCTTAGTTGGAGGTTGAACTGGCGCCTTGGGTGGTGGATGAAC
* * *
15742744 TGGTGGCTTGGTTGGTGGTTGCACTGGCGCCTTGGGTGGTGGATGAAC
1 TGGTGGCTTAGTTGGAGGTTGAACTGGCGCCTTGGGTGGTGGATGAAC
15742792 TGG
1 TGG
15742795 AGGAGGAGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.10, C:0.11, G:0.47, T:0.31
Consensus pattern (48 bp):
TGGTGGCTTAGTTGGAGGTTGAACTGGCGCCTTGGGTGGTGGATGAAC
Found at i:15742755 original size:60 final size:60
Alignment explanation
Indices: 15742600--15742761 Score: 166
Period size: 60 Copynumber: 2.7 Consensus size: 60
15742590 GTGGGTGTGT
* * ** * **
15742600 TGGTGGCTTCGTCGGGGGCTGAGTTGGAGGCTTGGTTGGTGGCTTAGTCGGGGGCTGAGT
1 TGGTGGCTTAGTCGGGGGTTGAACTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
** * * *
15742660 TGGTGGCTTAGTCGGGGGTTGAGTTGGAGGTTTGGTTGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTAGTCGGGGGTTGAACTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
* *
15742720 TGGTGGCTTGGGT-GGTGGG-TGAACTGGTGGCTTGGTTGGTGG
1 TGGTGGCTT-AGTCGG-GGGTTGAACTGGAGGCTTGGTTGGTGG
15742762 TTGCACTGGC
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
60 82 0.94
61 5 0.06
ACGTcount: A:0.08, C:0.09, G:0.50, T:0.33
Consensus pattern (60 bp):
TGGTGGCTTAGTCGGGGGTTGAACTGGAGGCTTGGTTGGTGGCTTAGTCGGAGGCTGAAC
Found at i:15742769 original size:24 final size:24
Alignment explanation
Indices: 15742696--15742794 Score: 117
Period size: 24 Copynumber: 4.1 Consensus size: 24
15742686 GAGGTTTGGT
* * *
15742696 TGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
*
15742720 TGGTGGCTTGGGTGGTGGGTGAAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
* *
15742744 TGGTGGCTTGGTTGGTGGTTGCAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
* * *
15742768 TGGCGCCTTGGGTGGTGGATGAAC
1 TGGTGGCTTGGGTGGTGGTTGAAC
15742792 TGG
1 TGG
15742795 AGGAGGAGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.10, C:0.11, G:0.47, T:0.31
Consensus pattern (24 bp):
TGGTGGCTTGGGTGGTGGTTGAAC
Found at i:15742866 original size:12 final size:12
Alignment explanation
Indices: 15742823--15742876 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
15742813 GGGCTTAGTG
*
15742823 GGTGGATGAGGAT
1 GGTGG-TGAGGGT
*
15742836 GGGGGTGAGGGT
1 GGTGGTGAGGGT
15742848 GAG-GGTGAGGGT
1 G-GTGGTGAGGGT
*
15742860 GGTGGTGATGGT
1 GGTGGTGAGGGT
15742872 GGTGG
1 GGTGG
15742877 GTTGGTGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 1 0.03
12 30 0.83
13 5 0.14
ACGTcount: A:0.13, C:0.00, G:0.65, T:0.22
Consensus pattern (12 bp):
GGTGGTGAGGGT
Found at i:15745782 original size:42 final size:42
Alignment explanation
Indices: 15745734--15745813 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
15745724 AAAATAAATC
*
15745734 CACTCCAAATTTATATCTTCCTACACCGACAATAGTGTCGAT
1 CACTCCAAATTTATATCCTCCTACACCGACAATAGTGTCGAT
15745776 CACTCCAAATTTATATCCTCCTACACCGACAATAGTGT
1 CACTCCAAATTTATATCCTCCTACACCGACAATAGTGT
15745814 TGATACAGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.30
Consensus pattern (42 bp):
CACTCCAAATTTATATCCTCCTACACCGACAATAGTGTCGAT
Found at i:15749807 original size:9 final size:9
Alignment explanation
Indices: 15749793--15749826 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
15749783 GACGAAATTG
15749793 AAAAGAAGA
1 AAAAGAAGA
15749802 AAAAGAAGA
1 AAAAGAAGA
15749811 AAAAGAAGA
1 AAAAGAAGA
*
15749820 AGAAGAA
1 AAAAGAA
15749827 CAACAACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (9 bp):
AAAAGAAGA
Found at i:15750250 original size:30 final size:31
Alignment explanation
Indices: 15750216--15750286 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
15750206 TAACCATCGT
** *
15750216 AATTTTAAAAAAAATATT-GTAATTAACTTG
1 AATTTTAAAAAAAATATTAACAATTAACTTA
15750246 AATTTTAAAAAAAATATTAACAATTAACTTA
1 AATTTTAAAAAAAATATTAACAATTAACTTA
*
15750277 AAATTTAAAA
1 AATTTTAAAA
15750287 TTTAAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 18 0.50
31 18 0.50
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (31 bp):
AATTTTAAAAAAAATATTAACAATTAACTTA
Found at i:15750757 original size:18 final size:18
Alignment explanation
Indices: 15750734--15750769 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15750724 GTTGTTTTGA
15750734 ATGCTAATAATGCATGAT
1 ATGCTAATAATGCATGAT
15750752 ATGCTAATAATGCATGAT
1 ATGCTAATAATGCATGAT
15750770 TTGGGGACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (18 bp):
ATGCTAATAATGCATGAT
Found at i:15752043 original size:64 final size:64
Alignment explanation
Indices: 15751907--15752036 Score: 224
Period size: 65 Copynumber: 2.0 Consensus size: 64
15751897 ACTTCAATGT
*
15751907 TAAATTAATGTAAGTTTACACTTTTTTATAAATTTTTTGTATGATTGATATTTTAACAATCAAG
1 TAAATTAAAGTAAGTTTACACTTTTTTATAAATTTTTTGTATGATTGATATTTTAACAATCAAG
* *
15751971 TAAATTAAAGTAAGTTTACACTTTTTTATTATTATTTTTGTATGATTGATATTTTAACAATCAAG
1 TAAATTAAAGTAAGTTTACACTTTTTTATAAAT-TTTTTGTATGATTGATATTTTAACAATCAAG
15752036 T
1 T
15752037 CCTTAAACAT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
64 30 0.48
65 32 0.52
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.49
Consensus pattern (64 bp):
TAAATTAAAGTAAGTTTACACTTTTTTATAAATTTTTTGTATGATTGATATTTTAACAATCAAG
Found at i:15760402 original size:18 final size:17
Alignment explanation
Indices: 15760367--15760399 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15760357 CTTTTTATTC
15760367 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
15760384 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
15760400 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:15760583 original size:29 final size:31
Alignment explanation
Indices: 15760528--15760585 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
15760518 TTATTTAACA
*
15760528 AATAAAAATCTTATAATATTAACATTTAATT
1 AATAAAAATCTTATAATATTAAAATTTAATT
* *
15760559 AATAAATATCTT-TAA-CTTAAAATTTAA
1 AATAAAAATCTTATAATATTAAAATTTAA
15760586 GTAAATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.42
30 3 0.12
31 11 0.46
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (31 bp):
AATAAAAATCTTATAATATTAAAATTTAATT
Found at i:15763057 original size:28 final size:28
Alignment explanation
Indices: 15763017--15763095 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
15763007 GCAATCAAAT
* * *
15763017 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
15763045 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
15763073 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
15763096 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:15763893 original size:28 final size:28
Alignment explanation
Indices: 15763853--15763931 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
15763843 GCAATCAAAT
* * *
15763853 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
15763881 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
15763909 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
15763932 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:15764345 original size:836 final size:836
Alignment explanation
Indices: 15762733--15764395 Score: 3177
Period size: 836 Copynumber: 2.0 Consensus size: 836
15762723 CAAAATGACC
15762733 AAATTGTATGAAATGAGGTGTTTTAATGTCTAAATTAATATACTGAATGAAATTATTAATTTAGA
1 AAATTGTATGAAATGAGGTGTTTTAATGTCTAAATTAATATACTGAATGAAATTATTAATTTAGA
15762798 TCAAGATCGAGTGGAAAATCGAGAAAAATAAGAAAATTACCAAAATGCCCCTGAACTTTGGTATC
66 TCAAGATCGAGTGGAAAATCGAGAAAAATAAGAAAATTACCAAAATGCCCCTGAACTTTGGTATC
15762863 TCTGCAATTTAGCCAGGTAAGTTCGTATGCAATAAGCATTGTTAAATTGATGTTTCTAATGCTTT
131 TCTGCAATTTAGCCAGGTAAGTTCGTATGCAATAAGCATTGTTAAATTGATGTTTCTAATGCTTT
* *
15762928 AATATTGTATAAATTGTATATACGTGAATATTTTAATGTCTGACGATATATCGATAAAATGTGGC
196 AATATTGTATAAATTGTATATACGTGAATATTTTAATGTCTGACGACATATCGACAAAATGTGGC
15762993 ACTTAGTGTGCGGGGCAATCAAATATGGTACTCAGTGTACGAAATATTGAGAATGGCACTTAGTG
261 ACTTAGTGTGCGGGGCAATCAAATATGGTACTCAGTGTACGAAATATTGAGAATGGCACTTAGTG
15763058 TGCGAGATATTGAGAATGACACTTAGTGTGCAAAATATCGAATGATTCAAAGGGAAATTATAAAT
326 TGCGAGATATTGAGAATGACACTTAGTGTGCAAAATATCGAATGATTCAAAGGGAAATTATAAAT
15763123 TGTGATTGAATGATTAAACAGAGCAAAGTGAACAGGTATACATGCTATATTATATGAATTGTTTA
391 TGTGATTGAATGATTAAACAGAGCAAAGTGAACAGGTATACATGCTATATTATATGAATTGTTTA
15763188 TGAGACGACTTTATAATGGTGATATTTGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAAT
456 TGAGACGACTTTATAATGGTGATATTTGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAAT
15763253 ATTATCGGGTTTAAAACCTAGCAGGCTAAATGCCAGTGATTTGATAAAAGTCTAAGACTATGAGA
521 ATTATCGGGTTTAAAACCTAGCAGGCTAAATGCCAGTGATTTGATAAAAGTCTAAGACTATGAGA
*
15763318 CCTTGTGTTAAATTGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTC
586 CCTTGTGTTAAATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTC
*
15763383 TTATGCATGTTAGATCGATTGGAATTGAATCATGAGTGTGAAATGAGAAGCATAGATGAAAATGC
651 TTATGCATGTTAGATCGATTGGAATTGAATCATGAATGTGAAATGAGAAGCATAGATGAAAATGC
* *
15763448 CTATGTCATATATGTGAGTAAGGGCAAAACCATCGTAAATTATCGATAAGGGTGGACTATGTGCG
716 CTATGTCATATATGTGAATAAGGGCAAAACCATCGTAAATTATCAATAAGGGTGGACTATGTGCG
*
15763513 GAATCATCTTATAATTGCTAATTTGAACGGTTGTGTGCGAATCATTGCTAATTGCT
781 GAATCATCTTATAATTGCTAATTTGAACGGTTGTGTGCGAATAATTGCTAATTGCT
15763569 AAATTGTATGAAATGAGGTGTTTTAATGTCTAAATTAATATACTGAATGAAATTATTAATTTAGA
1 AAATTGTATGAAATGAGGTGTTTTAATGTCTAAATTAATATACTGAATGAAATTATTAATTTAGA
*
15763634 TCAAGATCGGGTGGAAAATCGAGAAAAATGAA-AAAATTACCAAAATGCCCCTGAACTTTGGTAT
66 TCAAGATCGAGTGGAAAATCGAGAAAAAT-AAGAAAATTACCAAAATGCCCCTGAACTTTGGTAT
*
15763698 CTCTGCAATTTAGCCAGTTAAGTTCGTATGCAATAAGCATTGTTAAATTGATGTTTCTAATGCTT
130 CTCTGCAATTTAGCCAGGTAAGTTCGTATGCAATAAGCATTGTTAAATTGATGTTTCTAATGCTT
15763763 TAATATTGTATAAATTGTATATACGTGAATATTTTAATGTCTGACGACATATCGACAAAATGTGG
195 TAATATTGTATAAATTGTATATACGTGAATATTTTAATGTCTGACGACATATCGACAAAATGTGG
*
15763828 CACTTAGTGTGTGGGGCAATCAAATATGGTACTCAGTGTACGAAATATTGAGAATGGCACTTAGT
260 CACTTAGTGTGCGGGGCAATCAAATATGGTACTCAGTGTACGAAATATTGAGAATGGCACTTAGT
15763893 GTGCGAGATATTGAGAATGACACTTAGTGTGCAAAATATCGAATGATTCAAAGGGAAATTATAAA
325 GTGCGAGATATTGAGAATGACACTTAGTGTGCAAAATATCGAATGATTCAAAGGGAAATTATAAA
*
15763958 TTGTGATTGAATGATTAAATAGAGCAAAGTGAACAGGTATACATGCTATATTATATGAATTGTTT
390 TTGTGATTGAATGATTAAACAGAGCAAAGTGAACAGGTATACATGCTATATTATATGAATTGTTT
15764023 ATGAGACGACTTTATAATGGTGATATTTGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAA
455 ATGAGACGACTTTATAATGGTGATATTTGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAA
15764088 TATTATCGGGTTTAAAACCTAGCAGGCTAAATGCC-GATGATTTGATAAAAGTCTAAGACTATGA
520 TATTATCGGGTTTAAAACCTAGCAGGCTAAATGCCAG-TGATTTGATAAAAGTCTAAGACTATGA
15764152 GACCTTGTGTTAAATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATAT
584 GACCTTGTGTTAAATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATAT
*
15764217 TCTTATGCATGTTAGATCGATTGGAATTGAATCATGAATGTGAAATGAGAAGCATAGGTGAAAAT
649 TCTTATGCATGTTAGATCGATTGGAATTGAATCATGAATGTGAAATGAGAAGCATAGATGAAAAT
15764282 GCCTATGTCATATATGTGAATAAGGGCAAAACCATCGTAAATTATCAATAAGGGTGGACTATGTG
714 GCCTATGTCATATATGTGAATAAGGGCAAAACCATCGTAAATTATCAATAAGGGTGGACTATGTG
*
15764347 TGGAATCATCTTATAATTGCTAATTTGAACGGTTGTGTGCGAATAATTG
779 CGGAATCATCTTATAATTGCTAATTTGAACGGTTGTGTGCGAATAATTG
15764396 AGCATGATGT
Statistics
Matches: 812, Mismatches: 13, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
835 1 0.00
836 809 1.00
837 2 0.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (836 bp):
AAATTGTATGAAATGAGGTGTTTTAATGTCTAAATTAATATACTGAATGAAATTATTAATTTAGA
TCAAGATCGAGTGGAAAATCGAGAAAAATAAGAAAATTACCAAAATGCCCCTGAACTTTGGTATC
TCTGCAATTTAGCCAGGTAAGTTCGTATGCAATAAGCATTGTTAAATTGATGTTTCTAATGCTTT
AATATTGTATAAATTGTATATACGTGAATATTTTAATGTCTGACGACATATCGACAAAATGTGGC
ACTTAGTGTGCGGGGCAATCAAATATGGTACTCAGTGTACGAAATATTGAGAATGGCACTTAGTG
TGCGAGATATTGAGAATGACACTTAGTGTGCAAAATATCGAATGATTCAAAGGGAAATTATAAAT
TGTGATTGAATGATTAAACAGAGCAAAGTGAACAGGTATACATGCTATATTATATGAATTGTTTA
TGAGACGACTTTATAATGGTGATATTTGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAAT
ATTATCGGGTTTAAAACCTAGCAGGCTAAATGCCAGTGATTTGATAAAAGTCTAAGACTATGAGA
CCTTGTGTTAAATCGGCAATTGAATTTGTTCAATGCATTAAGTTGGCCAGGTATGTGATATATTC
TTATGCATGTTAGATCGATTGGAATTGAATCATGAATGTGAAATGAGAAGCATAGATGAAAATGC
CTATGTCATATATGTGAATAAGGGCAAAACCATCGTAAATTATCAATAAGGGTGGACTATGTGCG
GAATCATCTTATAATTGCTAATTTGAACGGTTGTGTGCGAATAATTGCTAATTGCT
Found at i:15780537 original size:19 final size:19
Alignment explanation
Indices: 15780515--15780553 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15780505 TTTTAAATAG
*
15780515 ATACACATGTATTAATAAT
1 ATACACATGTATAAATAAT
15780534 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
15780553 A
1 A
15780554 AATAAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:15781426 original size:15 final size:15
Alignment explanation
Indices: 15781403--15781452 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
15781393 TTTATCAAAT
15781403 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* *
15781418 TTATTTTGATTGAAT
1 TTATATTGATTGAAA
15781433 TTATATTGATTGAAA
1 TTATATTGATTGAAA
15781448 -TATAT
1 TTATAT
15781453 AATATATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 5 0.16
15 26 0.84
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:15781979 original size:18 final size:19
Alignment explanation
Indices: 15781956--15781996 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
15781946 AATGAAATGA
15781956 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
15781974 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
15781993 GAAA
1 GAAA
15781997 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:15781994 original size:13 final size:13
Alignment explanation
Indices: 15781944--15781983 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
15781934 TTGAGCTATT
15781944 AGAA-TGAAA-TG
1 AGAATTGAAATTG
15781955 AGAAATTG-AATTG
1 AG-AATTGAAATTG
15781968 AGAATTGAAATTG
1 AGAATTGAAATTG
15781981 AGA
1 AGA
15781984 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:15784076 original size:15 final size:14
Alignment explanation
Indices: 15784056--15784087 Score: 55
Period size: 14 Copynumber: 2.2 Consensus size: 14
15784046 TATTTCTATC
15784056 TTTCTTTTCTTTTTT
1 TTTCTTTT-TTTTTT
15784071 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
15784085 TTT
1 TTT
15784088 GCCTCTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:15789533 original size:4 final size:4
Alignment explanation
Indices: 15789515--15789561 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
15789505 TCTGGGAGGG
* *
15789515 TTCT TT-T TCTCT TTCT TTCT TTCT TTCT TTCT ATCT CTCT TTCT TTC
1 TTCT TTCT T-TCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC
15789562 AAGTTCTAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
3 2 0.05
4 34 0.89
5 2 0.05
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (4 bp):
TTCT
Found at i:15800161 original size:167 final size:167
Alignment explanation
Indices: 15799885--15800385 Score: 1002
Period size: 167 Copynumber: 3.0 Consensus size: 167
15799875 ATCTCCAAAT
15799885 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
1 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
15799950 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
66 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
15800015 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
131 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
15800052 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
1 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
15800117 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
66 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
15800182 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
131 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
15800219 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
1 TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
15800284 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
66 ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
15800349 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
131 AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
15800386 GATTCTTTTT
Statistics
Matches: 334, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 334 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (167 bp):
TTTCTAGATTTGATAACTCGTTCTGTCTTCCTGTTGATGCTTTGGAATATGATACCACTGTCATA
ACATCCATCTGAGCAAACATTCATTTCTTGCAATTGTGTCATGATGAGCATGGCACGGTTGGTCG
AATTTGCAGCTTACACATACATCAAATGTAAATCTTC
Found at i:15817156 original size:176 final size:175
Alignment explanation
Indices: 15816857--15817208 Score: 478
Period size: 176 Copynumber: 2.0 Consensus size: 175
15816847 ATCTTCCCCC
* * * *
15816857 TACCACCGCCCCTCTTCTCTCCCTTGTCTCTGCAAATCAGTTTTTTTTTCTTCTCATCTCAGTTC
1 TACCACCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTTTTTCTCTTCTCATCTCAGTTC
* * * *
15816922 TCGCCCACCGCCGTCTCCGCTGATTTTTTCTGGATCTGACCCGTATTCCGTGTCGGATCGTGTTG
66 TAGCCCACCGCCG-CTCCGCTGATTTTTGCCGGATCTGACCCGTATTCCGTGTCGGATCGTGTCG
* *
15816987 ACACAGGTACTGCACCCCAAATTG-CCGAGTCAGGGTAACGAAGCT
130 ACACAAGTACTGCACCCCAAATTGCCCGAGCCAGGGTAACGAAGCT
* *
15817032 TACCATCGCCCCTCTTCTCTCTCTCGTATCTACAAATCAGGTTTCTTCATTCTCTTCTCATCTCA
1 TACCACCGCCCCTCTTCTCTCCCTCGTATCTACAAATCA-GTTT-TT--TTCTCTTCTCATCTCA
*
15817097 GTTCTAGCCCACCG-C-CTCCGCTGGTTTTTGCCGGATCTGACCCGTA-TCGCGTGTCGGATCGT
62 GTTCTAGCCCACCGCCGCTCCGCTGATTTTTGCCGGATCTGACCCGTATTC-CGTGTCGGATCGT
* *
15817159 GTCGACACAAGTACTGCATCCCAAATTGCTCCGAGCCCGGGTAACGAAGC
126 GTCGACACAAGTACTGCACCCCAAATTGC-CCGAGCCAGGGTAACGAAGC
15817209 CTATACTTTT
Statistics
Matches: 155, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
175 36 0.23
176 70 0.45
177 2 0.01
178 19 0.12
179 28 0.18
ACGTcount: A:0.17, C:0.34, G:0.18, T:0.31
Consensus pattern (175 bp):
TACCACCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTTTTTCTCTTCTCATCTCAGTTC
TAGCCCACCGCCGCTCCGCTGATTTTTGCCGGATCTGACCCGTATTCCGTGTCGGATCGTGTCGA
CACAAGTACTGCACCCCAAATTGCCCGAGCCAGGGTAACGAAGCT
Found at i:15828237 original size:23 final size:24
Alignment explanation
Indices: 15828193--15828237 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
15828183 TTGTTCGCAT
**
15828193 ATCATGTTTATATTTTTCTTTTGC
1 ATCATGTTTATATTTTAATTTTGC
*
15828217 ATCATG-TTGTATTTTAATTTT
1 ATCATGTTTATATTTTAATTTT
15828238 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (24 bp):
ATCATGTTTATATTTTAATTTTGC
Found at i:15836238 original size:45 final size:46
Alignment explanation
Indices: 15836170--15836310 Score: 115
Period size: 53 Copynumber: 2.9 Consensus size: 46
15836160 CGCATCACAC
** * *
15836170 ACCGAAGCCATAGCCTTGCCATGGTCTTACACGG-TTCACATTCAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTCAT
* *
15836215 ACCGAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACA-T-T--C---AT
* * *
15836268 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAGTCACATT
1 ACCGAAGCCATAGCCCAGAC-ATGGTCTTACACGGAATCACATT
15836311 ATCACATTGC
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
45 29 0.37
46 5 0.06
47 1 0.01
48 1 0.01
50 1 0.01
51 1 0.01
52 2 0.03
53 38 0.49
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (46 bp):
ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTCAT
Found at i:15836292 original size:53 final size:53
Alignment explanation
Indices: 15836205--15836354 Score: 221
Period size: 53 Copynumber: 2.8 Consensus size: 53
15836195 CTTACACGGT
* *
15836205 TCACATTCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACATT-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
15836259 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
15836312 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
15836355 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 7 0.08
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:15867248 original size:21 final size:21
Alignment explanation
Indices: 15867222--15867262 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15867212 ATCTGCTCAA
* *
15867222 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
15867243 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
15867263 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:15870120 original size:5 final size:5
Alignment explanation
Indices: 15870110--15870134 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15870100 ATGTGAAATG
15870110 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
15870135 AACAAGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:15870830 original size:26 final size:27
Alignment explanation
Indices: 15870781--15870832 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
15870771 GGTTTGTGAT
15870781 AATTATATATTTAAAAATAATTATAAA
1 AATTATATATTTAAAAATAATTATAAA
15870808 AATTATA-ATGTT-AAAATAATTATAA
1 AATTATATAT-TTAAAAATAATTATAA
15870833 TTGAAGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (27 bp):
AATTATATATTTAAAAATAATTATAAA
Found at i:15880285 original size:31 final size:30
Alignment explanation
Indices: 15880249--15880312 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
15880239 ATTTTTTTTA
15880249 ATATTTACATTATAATAT-TATATAATAATAT
1 ATATTTA-ATTATAATATGTATAT-ATAATAT
* * *
15880280 ATATTTAATTTTTATGTGTATATATAATAT
1 ATATTTAATTATAATATGTATATATAATAT
15880310 ATA
1 ATA
15880313 AAATAACATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 17 0.59
31 12 0.41
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (30 bp):
ATATTTAATTATAATATGTATATATAATAT
Found at i:15889615 original size:21 final size:20
Alignment explanation
Indices: 15889585--15889625 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
15889575 ATTCGGGTGG
*
15889585 ATTAACTCTTTTGAGCTTCT
1 ATTAACTCTTATGAGCTTCT
15889605 ATTAAGCTCTTATGAGCTTCT
1 ATTAA-CTCTTATGAGCTTCT
15889626 GTTGGTGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (20 bp):
ATTAACTCTTATGAGCTTCT
Found at i:15891045 original size:103 final size:104
Alignment explanation
Indices: 15890866--15891130 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
15890856 AACCGTTATT
* * * *
15890866 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
15890931 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
15890969 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
15891033 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
15891073 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
15891131 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:15891492 original size:30 final size:29
Alignment explanation
Indices: 15891458--15891522 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15891448 TAATCCACCA
15891458 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
15891488 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
15891518 CCCAA
1 CCCAA
15891523 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:15891496 original size:31 final size:30
Alignment explanation
Indices: 15891465--15891522 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15891455 CCACCCAACT
15891465 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
15891495 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
15891523 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:15893690 original size:26 final size:26
Alignment explanation
Indices: 15893655--15893704 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15893645 AATGTGAAAG
*
15893655 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15893681 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
15893705 AGTTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:15893787 original size:103 final size:103
Alignment explanation
Indices: 15893576--15893840 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 103
15893566 GTTGTACATA
** *
15893576 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
15893641 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
*
15893679 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
15893743 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
* * *
15893781 TAAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 -AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
15893841 AATAACGGTT
Statistics
Matches: 148, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
102 29 0.20
103 118 0.80
104 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
Found at i:15893830 original size:32 final size:27
Alignment explanation
Indices: 15893754--15893830 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 27
15893744 CTGAAATAAA
*
15893754 AAGGGGGTTGCTATGTGCTGATTCCCCT
1 AAGGGGG-TGCTAAGTGCTGATTCCCCT
*
15893782 AAGGGGTTGCTAAGTGCTGATTCCCCGATT
1 AAGGGGGTGCTAAGTGCTGATTCCCC---T
15893812 AAGTGGTGGTGCTAAGTGC
1 AAG-GG-GGTGCTAAGTGC
15893831 GAGATCCACC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 18 0.44
28 6 0.15
30 4 0.10
31 2 0.05
32 11 0.27
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.30
Consensus pattern (27 bp):
AAGGGGGTGCTAAGTGCTGATTCCCCT
Found at i:15897565 original size:103 final size:104
Alignment explanation
Indices: 15897335--15897600 Score: 410
Period size: 103 Copynumber: 2.6 Consensus size: 104
15897325 GTTGTACATA
** *
15897335 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
15897400 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
15897439 GAGGGGTTGCTAAGTGTTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
15897503 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
15897542 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
15897601 AATAACGGTT
Statistics
Matches: 147, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
103 82 0.56
104 65 0.44
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:15905273 original size:16 final size:16
Alignment explanation
Indices: 15905252--15905290 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
15905242 AAAATTACAT
15905252 AAAAATATGAAAAGAC
1 AAAAATATGAAAAGAC
15905268 AAAAATATGAAAAGAC
1 AAAAATATGAAAAGAC
15905284 AAAAATA
1 AAAAATA
15905291 ATAATAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.72, C:0.05, G:0.10, T:0.13
Consensus pattern (16 bp):
AAAAATATGAAAAGAC
Found at i:15908271 original size:20 final size:20
Alignment explanation
Indices: 15908234--15908271 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15908224 TGATGGGGAG
*
15908234 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
15908254 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
15908272 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:15910489 original size:20 final size:20
Alignment explanation
Indices: 15910464--15910503 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15910454 ATTTAAGTAT
15910464 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
15910484 TAAAAGATATTTATTAATTA
1 TAAAAGATATTTATTAATTA
15910504 AATAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
TAAAAGATATTTATTAATTA
Found at i:15910743 original size:20 final size:18
Alignment explanation
Indices: 15910718--15910758 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
15910708 AAAAGCAAGG
15910718 AAAGAAAGAAAGAAAGGAGA
1 AAAGAAAG-AAGAAAGG-GA
15910738 AAAGAAAGAAGAAAGGGA
1 AAAGAAAGAAGAAAGGGA
15910756 AAA
1 AAA
15910759 TTGAAGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAGAAAGGGA
Found at i:15912549 original size:13 final size:13
Alignment explanation
Indices: 15912531--15912556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15912521 ACCATGGCAG
15912531 CCTGATATGAAAT
1 CCTGATATGAAAT
15912544 CCTGATATGAAAT
1 CCTGATATGAAAT
15912557 GTGTAAGACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
CCTGATATGAAAT
Found at i:15912580 original size:59 final size:59
Alignment explanation
Indices: 15912486--15912602 Score: 207
Period size: 59 Copynumber: 2.0 Consensus size: 59
15912476 AGTGTGCTCT
*
15912486 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATC
* *
15912545 CTGATATGAAATGTGTAAGACCATGGTTGACAGATACCATGGCAACGTGATATGAAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
15912603 GAACAAGACC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.26
Consensus pattern (59 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATC
Found at i:15912598 original size:46 final size:46
Alignment explanation
Indices: 15912546--15912685 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
15912536 TATGAAATCC
* * *
15912546 TGATATGAAATGTGTAAGACCATGGTTGACAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
**
15912592 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
15912638 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
15912684 TG
1 TG
15912686 TCAAAGATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 1 0.01
46 80 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:15915372 original size:33 final size:32
Alignment explanation
Indices: 15915326--15915389 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
15915316 TCCTTCCCAT
** *
15915326 ATTTTTAGGTTAGGTTTCTTTTCTTATCTTTTC
1 ATTTTTAAATTAGGTTT-TTCTCTTATCTTTTC
*
15915359 ATTTTTAAATTAGGTTTTTCTCTTTTCTTTT
1 ATTTTTAAATTAGGTTTTTCTCTTATCTTTT
15915390 TAGAATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.14, C:0.11, G:0.09, T:0.66
Consensus pattern (32 bp):
ATTTTTAAATTAGGTTTTTCTCTTATCTTTTC
Found at i:15916306 original size:41 final size:40
Alignment explanation
Indices: 15916221--15916347 Score: 128
Period size: 41 Copynumber: 3.1 Consensus size: 40
15916211 TTTTCTTAAA
* * * * *
15916221 AAACGCCGCAAAAGGCAAGGTAATAGCAGCGTTTCTCTCGT
1 AAACGCAGCAAAAGGTAAGGCAATAGCAGCGTTTTTC-CAT
* *
15916262 AAACGCTGCAAAAGGTAAGGCAATAGCAGCATTTTTACCAT
1 AAACGCAGCAAAAGGTAAGGCAATAGCAGCGTTTTT-CCAT
* * * *
15916303 AAACGCAGCAAATGGTAAAGCAACAGCGGCGTTTTTCCCAT
1 AAACGCAGCAAAAGGTAAGGCAATAGCAGCGTTTTT-CCAT
15916344 AAAC
1 AAAC
15916348 ATTGCGAATT
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
41 71 0.99
42 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (40 bp):
AAACGCAGCAAAAGGTAAGGCAATAGCAGCGTTTTTCCAT
Found at i:15916442 original size:22 final size:22
Alignment explanation
Indices: 15916412--15916486 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
15916402 ACTGGTTCCC
*
15916412 TTTTCTTTCGCAAACGATGCTG
1 TTTTATTTCGCAAACGATGCTG
* *** * *
15916434 TTTTATTTCTCCCCCGATTCTC
1 TTTTATTTCGCAAACGATGCTG
* * *
15916456 TTTTCTTTCGCAAATGATGTTG
1 TTTTATTTCGCAAACGATGCTG
15916478 TTTTATTTC
1 TTTTATTTC
15916487 TCTCCCCCGA
Statistics
Matches: 36, Mismatches: 17, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.15, C:0.23, G:0.12, T:0.51
Consensus pattern (22 bp):
TTTTATTTCGCAAACGATGCTG
Found at i:15916480 original size:44 final size:46
Alignment explanation
Indices: 15916407--15916510 Score: 167
Period size: 44 Copynumber: 2.3 Consensus size: 46
15916397 TACAAACTGG
15916407 TTCCCTTTTCTTTCGCAAACGATGCTGTTTTA-TT-TCTCCCCCGA
1 TTCCCTTTTCTTTCGCAAACGATGCTGTTTTATTTCTCTCCCCCGA
* * *
15916451 TTCTCTTTTCTTTCGCAAATGATGTTGTTTTATTTCTCTCCCCCGA
1 TTCCCTTTTCTTTCGCAAACGATGCTGTTTTATTTCTCTCCCCCGA
15916497 TTCCCTTTTCTTTC
1 TTCCCTTTTCTTTC
15916511 TTAGCCTTTC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 29 0.54
45 2 0.04
46 23 0.43
ACGTcount: A:0.12, C:0.30, G:0.10, T:0.49
Consensus pattern (46 bp):
TTCCCTTTTCTTTCGCAAACGATGCTGTTTTATTTCTCTCCCCCGA
Found at i:15918457 original size:12 final size:12
Alignment explanation
Indices: 15918440--15918464 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15918430 AGTAATTTCG
15918440 GGTCGGTTAACC
1 GGTCGGTTAACC
15918452 GGTCGGTTAACC
1 GGTCGGTTAACC
15918464 G
1 G
15918465 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:15920678 original size:6 final size:6
Alignment explanation
Indices: 15920662--15920709 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
15920652 TTTCCTTTCC
15920662 TTTTATA TTTTTA TTTTTA TTTTTGA -TTTTA -TTTT- TTTTTA TTTTTA
1 TTTT-TA TTTTTA TTTTTA TTTTT-A TTTTTA TTTTTA TTTTTA TTTTTA
15920709 T
1 T
15920710 AATTTTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 9 0.24
6 24 0.63
7 5 0.13
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:15920776 original size:23 final size:23
Alignment explanation
Indices: 15920750--15920798 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
15920740 AATACTATGT
15920750 TAAATTATATTTT-TACATTTTTA
1 TAAATTATATTTTATA-ATTTTTA
*
15920773 TAAATTTTATTTTATAATTTTTA
1 TAAATTATATTTTATAATTTTTA
15920796 TAA
1 TAA
15920799 TTTTAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TAAATTATATTTTATAATTTTTA
Found at i:15920809 original size:23 final size:23
Alignment explanation
Indices: 15920766--15920809 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
15920756 ATATTTTTAC
*
15920766 ATTTTTATAAATTTTATTTTATA
1 ATTTTTATAAATTTTAATTTATA
15920789 ATTTTTAT-AATTTTAAATTTA
1 ATTTTTATAAATTTT-AATTTA
15920810 GCTAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTTTATAAATTTTAATTTATA
Found at i:15924562 original size:23 final size:22
Alignment explanation
Indices: 15924535--15924584 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
15924525 TGCCTAAAAT
15924535 GACACACGAGGTGCCTG-ATAC
1 GACACACGAGGTGCCTGAATAC
*
15924556 GACACACGAGGTTCCTGAAATAC
1 GACACACGAGGTGCCTG-AATAC
15924579 GACACA
1 GACACA
15924585 TAAAGTGCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 16 0.62
23 10 0.38
ACGTcount: A:0.34, C:0.28, G:0.24, T:0.14
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAC
Found at i:15924595 original size:23 final size:23
Alignment explanation
Indices: 15924510--15924596 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 23
15924500 CCTGATCAGT
*
15924510 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * *
15924532 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* * *
15924552 ATACGACACACGAGGTTCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
15924575 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
15924597 TCAATAAAGC
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.02
21 31 0.61
22 1 0.02
23 18 0.35
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:15924991 original size:15 final size:15
Alignment explanation
Indices: 15924966--15925023 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
15924956 TCATATATAT
15924966 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
15924982 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
15924997 AATAATTTCAATCAA
1 TATAAATTCAATCAA
15925012 TATAAATTCAAT
1 TATAAATTCAAT
15925024 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:15926231 original size:5 final size:5
Alignment explanation
Indices: 15926218--15926259 Score: 75
Period size: 5 Copynumber: 8.2 Consensus size: 5
15926208 TTCTTTAGTT
15926218 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA T
15926260 TAAAACATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 32 0.89
6 4 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:15926295 original size:8 final size:8
Alignment explanation
Indices: 15926282--15926310 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
15926272 TATCTTTATT
15926282 ATATAATA
1 ATATAATA
15926290 ATATAATA
1 ATATAATA
15926298 ATATAATA
1 ATATAATA
15926306 ATATA
1 ATATA
15926311 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:15928924 original size:23 final size:23
Alignment explanation
Indices: 15928894--15928941 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
15928884 TCTTTTCATG
15928894 AATGATTAGGGCAAATTGTATGC
1 AATGATTAGGGCAAATTGTATGC
15928917 AATGATTAGGGCAAATTGTATGC
1 AATGATTAGGGCAAATTGTATGC
15928940 AA
1 AA
15928942 CTGAAGCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (23 bp):
AATGATTAGGGCAAATTGTATGC
Found at i:15931858 original size:17 final size:17
Alignment explanation
Indices: 15931836--15931871 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
15931826 CGTCAGGCAG
15931836 GAAACCTGGGCCGACAA
1 GAAACCTGGGCCGACAA
15931853 GAAACCTGGGCCGACAA
1 GAAACCTGGGCCGACAA
15931870 GA
1 GA
15931872 GACCGTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.28, G:0.31, T:0.06
Consensus pattern (17 bp):
GAAACCTGGGCCGACAA
Found at i:15933971 original size:17 final size:17
Alignment explanation
Indices: 15933951--15933985 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15933941 TTATATACTT
*
15933951 AATATAATATTATATAA
1 AATATAATATAATATAA
*
15933968 AATATATTATAATATAA
1 AATATAATATAATATAA
15933985 A
1 A
15933986 TAAGAGTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATAATATAATATAA
Found at i:15937658 original size:31 final size:31
Alignment explanation
Indices: 15937615--15937676 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
15937605 AATGGATAAG
15937615 TATTGAGAGTTAAATTGATAAATTTTGTAAA
1 TATTGAGAGTTAAATTGATAAATTTTGTAAA
* * * * *
15937646 TATTGAGGGTTAAGTTTATTAATTTTTTAAA
1 TATTGAGAGTTAAATTGATAAATTTTGTAAA
15937677 AATTTAAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (31 bp):
TATTGAGAGTTAAATTGATAAATTTTGTAAA
Found at i:15938674 original size:21 final size:21
Alignment explanation
Indices: 15938650--15938689 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15938640 ATTTTCACTG
15938650 ATTAAAATTT-TATATATAGGC
1 ATTAAAATTTATAT-TATAGGC
*
15938671 ATTAATATTTATATTATAG
1 ATTAAAATTTATATTATAG
15938690 TATTATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (21 bp):
ATTAAAATTTATATTATAGGC
Found at i:15938694 original size:20 final size:21
Alignment explanation
Indices: 15938658--15938709 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 21
15938648 TGATTAAAAT
15938658 TTTATATATAGGCATTA-ATA
1 TTTATATATAGGCATTATATA
*
15938678 TTTATATTATA-GTATTATATA
1 TTTATA-TATAGGCATTATATA
15938699 TTACTATATAT
1 TT--TATATAT
15938710 TTAATTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 11 0.41
21 9 0.33
22 3 0.11
23 4 0.15
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (21 bp):
TTTATATATAGGCATTATATA
Found at i:15938850 original size:29 final size:29
Alignment explanation
Indices: 15938803--15938891 Score: 79
Period size: 31 Copynumber: 3.0 Consensus size: 29
15938793 TTGATTTAAA
*
15938803 GTGCACTTGTATACATGAACTTTAATTTG
1 GTGCAATTGTATACATGAACTTTAATTTG
* * *
15938832 GTGCAATTGTAAACGTGAAACTCTAATTGTG
1 GTGCAATTGTATACATG-AACTTTAATT-TG
* * * *
15938863 GTTCAAATGTATACTTAAAACTTTAATTT
1 GTGCAATTGTATACAT-GAACTTTAATTT
15938892 TGATTTAATC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
29 14 0.30
30 10 0.21
31 23 0.49
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (29 bp):
GTGCAATTGTATACATGAACTTTAATTTG
Found at i:15941898 original size:42 final size:42
Alignment explanation
Indices: 15941851--15941949 Score: 101
Period size: 42 Copynumber: 2.4 Consensus size: 42
15941841 GAAGTCCAAA
** *
15941851 GGTTGAACAGAAGCTCATGGGAGCAAAACAGAAACCCATAAG
1 GGTTGAACAGAAGCTCATAAGAACAAAACAGAAACCCATAAG
* ** *
15941893 GGTTGAAC-GAAAGCTCGTAAGAACTGAACGGAAACCCATAAG
1 GGTTGAACAG-AAGCTCATAAGAACAAAACAGAAACCCATAAG
**
15941935 GGTCAAACAGAAGCT
1 GGTTGAACAGAAGCT
15941950 TAAAAGAGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.02
42 44 0.96
43 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.26, T:0.13
Consensus pattern (42 bp):
GGTTGAACAGAAGCTCATAAGAACAAAACAGAAACCCATAAG
Found at i:15945591 original size:25 final size:25
Alignment explanation
Indices: 15945562--15945613 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
15945552 TTTGGCTTGA
**
15945562 CATTTACTAA-GCAATATTGAATATT
1 CATTTA-TAAGGCAATATCAAATATT
15945587 CATTTATAAGGCAATATCAAATATT
1 CATTTATAAGGCAATATCAAATATT
15945612 CA
1 CA
15945614 AATTATTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (25 bp):
CATTTATAAGGCAATATCAAATATT
Found at i:15946839 original size:11 final size:11
Alignment explanation
Indices: 15946823--15946847 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15946813 TTCAGCTGAT
15946823 GAAAATGAAGA
1 GAAAATGAAGA
15946834 GAAAATGAAGA
1 GAAAATGAAGA
15946845 GAA
1 GAA
15946848 TTCTAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (11 bp):
GAAAATGAAGA
Found at i:15949850 original size:39 final size:41
Alignment explanation
Indices: 15949759--15949854 Score: 106
Period size: 45 Copynumber: 2.3 Consensus size: 41
15949749 CTGTTACCGC
* * *
15949759 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAACATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGT---ACA-TGA
15949804 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGT-CA-GA
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTACATGA
*
15949843 TATTGTTACCGT
1 TACTGTTACCGT
15949855 ACTATTACTG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
39 12 0.26
41 2 0.04
45 33 0.70
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.39
Consensus pattern (41 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTACATGA
Found at i:15953198 original size:16 final size:17
Alignment explanation
Indices: 15953177--15953211 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
15953167 TAATGTCTAT
15953177 GAAAATTA-TTAATTGA
1 GAAAATTACTTAATTGA
15953193 GAAAATTATCTTAATTGA
1 GAAAATTA-CTTAATTGA
15953211 G
1 G
15953212 GGTTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
GAAAATTACTTAATTGA
Found at i:15960697 original size:22 final size:22
Alignment explanation
Indices: 15960612--15960697 Score: 93
Period size: 22 Copynumber: 3.7 Consensus size: 22
15960602 TTTAGTATCA
*
15960612 TTTTTAT-TTATTTTAATATTTG
1 TTTTTATGTT-TTTAAATATTTG
*
15960634 TTTTTATGTTTTTAAATATATTTAA
1 TTTTTATGTTTTT-AA-ATATTT-G
*
15960659 TTTATTATATTTTTAAATATTTG
1 TTT-TTATGTTTTTAAATATTTG
15960682 TTTTTATGTTTTTAAA
1 TTTTTATGTTTTTAAA
15960698 ACTCATATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
22 22 0.41
23 6 0.11
24 12 0.22
25 5 0.09
26 9 0.17
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
TTTTTATGTTTTTAAATATTTG
Found at i:15961466 original size:46 final size:46
Alignment explanation
Indices: 15961414--15961917 Score: 740
Period size: 46 Copynumber: 11.0 Consensus size: 46
15961404 TTTGACATGA
* * * * * *
15961414 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
15961460 TGCCATAGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
15961506 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
15961552 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *** *
15961598 TGCCATGGTATCTTTTAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
15961644 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
15961690 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *** *
15961736 TGCCATGGTATCTTTCAACCATGGTATTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
15961782 TGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
15961828 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
15961874 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
15961918 AGAGCACACT
Statistics
Matches: 418, Mismatches: 39, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
45 4 0.01
46 414 0.99
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:15961662 original size:138 final size:138
Alignment explanation
Indices: 15961414--15961916 Score: 837
Period size: 138 Copynumber: 3.6 Consensus size: 138
15961404 TTTGACATGA
* * * * * * * *
15961414 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATAGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGCTGCCATGGTATCTTTCAA
15961478 CCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
15961543 ATATCAGGT
130 ATATCAGGT
* *
15961552 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGCTGCCATGGTATCTTTTAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
*
15961617 CATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCA
66 CATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
15961682 TATCAAGT
131 TATCAGGT
15961690 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
* *
15961755 CATGGTATTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCA
66 CATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
15961820 TATCAGGT
131 TATCAGGT
15961828 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
***
15961893 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTGTTCATTTCATATCA
15961917 GAGAGCACAC
Statistics
Matches: 342, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
137 4 0.01
138 338 0.99
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAAC
CATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:15969405 original size:9 final size:9
Alignment explanation
Indices: 15969388--15969425 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
15969378 TATTTTGTCA
15969388 TTATTATTT
1 TTATTATTT
*
15969397 TTATCATTT
1 TTATTATTT
15969406 TTATTATTT
1 TTATTATTT
15969415 ATT-TTATTT
1 -TTATTATTT
15969424 TT
1 TT
15969426 CTTTGATTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTATTT
Found at i:15971240 original size:15 final size:17
Alignment explanation
Indices: 15971220--15971257 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
15971210 GTATAAAACG
15971220 TTTTTTAAAGAAC-C-T
1 TTTTTTAAAGAACTCAT
*
15971235 TTTTTTATAGAACTCAT
1 TTTTTTAAAGAACTCAT
15971252 TTTTTT
1 TTTTTT
15971258 GCCATGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 1 0.05
17 7 0.35
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTTTTAAAGAACTCAT
Found at i:15971862 original size:21 final size:23
Alignment explanation
Indices: 15971822--15971866 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
15971812 GTTTTCCAAT
15971822 ATATTACTAAATTAATTTTAAAA
1 ATATTACTAAATTAATTTTAAAA
*
15971845 ATATTA-TAATTTAA-TTTAAAA
1 ATATTACTAAATTAATTTTAAAA
15971866 A
1 A
15971867 GTTGTGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 7 0.33
23 6 0.29
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
ATATTACTAAATTAATTTTAAAA
Found at i:15972192 original size:3 final size:3
Alignment explanation
Indices: 15972184--15972223 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
15972174 TTAGAATTAT
15972184 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15972224 GATGAAGAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15972967 original size:15 final size:15
Alignment explanation
Indices: 15972943--15972982 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
15972933 AAATAAAAAT
15972943 AAAATTACATT-ATA
1 AAAATTACATTAATA
15972957 AAAATTTACATTAATAA
1 AAAA-TTACATTAAT-A
15972974 AAAATTACA
1 AAAATTACA
15972983 AAACACTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.17
15 7 0.30
16 7 0.30
17 5 0.22
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATTACATTAATA
Found at i:15973469 original size:17 final size:19
Alignment explanation
Indices: 15973439--15973475 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
15973429 TTAGTAGTTA
15973439 TATTATAAACAAATAATTT
1 TATTATAAACAAATAATTT
*
15973458 TATTA-AAA-AAATTATTT
1 TATTATAAACAAATAATTT
15973475 T
1 T
15973476 CTCCTTGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 3 0.18
19 5 0.29
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TATTATAAACAAATAATTT
Found at i:15975085 original size:28 final size:28
Alignment explanation
Indices: 15975054--15975113 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
15975044 TCCCATATTA
15975054 ATGGAGTATAGGAAAAGTCTCATAACTT
1 ATGGAGTATAGGAAAAGTCTCATAACTT
* ** * *
15975082 ATGGGGTATAGGAAGGGTTTTATAACTT
1 ATGGAGTATAGGAAAAGTCTCATAACTT
15975110 ATGG
1 ATGG
15975114 GGTTGATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (28 bp):
ATGGAGTATAGGAAAAGTCTCATAACTT
Found at i:15980432 original size:28 final size:28
Alignment explanation
Indices: 15980401--15980463 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
15980391 TCCCATATTA
15980401 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
** * *
15980429 ATGGGGTATAGGAAGGGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
15980457 ATGGGGT
1 ATGGGGT
15980464 TGATAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.06, G:0.32, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:15980674 original size:13 final size:13
Alignment explanation
Indices: 15980649--15980681 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
15980639 CTATTTTTCG
15980649 AGAAAATAAAAAT
1 AGAAAATAAAAAT
15980662 A-AAAATGAAAAAT
1 AGAAAAT-AAAAAT
15980675 AGAAAAT
1 AGAAAAT
15980682 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 8 0.44
14 5 0.28
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (13 bp):
AGAAAATAAAAAT
Found at i:15982337 original size:20 final size:20
Alignment explanation
Indices: 15982293--15982331 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15982283 ATATATCAAC
*
15982293 GTTATAAAAACTATTTAAAA
1 GTTATAAAAACTATTAAAAA
15982313 GTTATAAAAACT-TTAAAAA
1 GTTATAAAAACTATTAAAAA
15982332 TTTTATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (20 bp):
GTTATAAAAACTATTAAAAA
Found at i:15988323 original size:3 final size:3
Alignment explanation
Indices: 15988315--15988345 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
15988305 AAAAACTGAA
*
15988315 TTC TTC TTC TTC TTC TTC TTC TTA TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
15988346 GACAGGCGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:15993906 original size:18 final size:18
Alignment explanation
Indices: 15993865--15993900 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15993855 CCTAAATTTG
15993865 AATAATCCTAATAATTAT
1 AATAATCCTAATAATTAT
15993883 AATAATCCTAATAATTAT
1 AATAATCCTAATAATTAT
15993901 CTTAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AATAATCCTAATAATTAT
Found at i:15994822 original size:118 final size:118
Alignment explanation
Indices: 15994678--15994890 Score: 363
Period size: 118 Copynumber: 1.8 Consensus size: 118
15994668 TTTTACCCAA
15994678 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
1 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
* *
15994743 TCAGTCACGATTTGAGCCATACTCATAACCTCGGCTAGCGGAGTTTTACTTGT
66 TCAGTCACGATCTAAGCCATACTCATAACCTCGGCTAGCGGAGTTTTACTTGT
** *
15994796 CACGTCACACAACCTTTTGATTCGAAGTAGAATGACAACCTAAGCACCCTACCCCGGTTACTCAG
1 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
**
15994861 TCAGTCACGATCTAAGCTGTACTCATAACC
66 TCAGTCACGATCTAAGCCATACTCATAACC
15994891 ATGGAAAACA
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 88 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (118 bp):
CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
TCAGTCACGATCTAAGCCATACTCATAACCTCGGCTAGCGGAGTTTTACTTGT
Found at i:15995742 original size:42 final size:43
Alignment explanation
Indices: 15995653--15995743 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
15995643 TGAAAAGGGG
* * * *
15995653 TGTTTGGCTGCAGGTTTTGGGGATTCTAAGGCTGGAATAGGAT
1 TGTTTGGCTGCAGGATATGGGGATTCTAAGGCTGGAATAGAAC
*
15995696 TGTTTGGCTGCAGAGATAT-GGTATTCT-AGGCTGGAATAGAAC
1 TGTTTGGCTGCAG-GATATGGGGATTCTAAGGCTGGAATAGAAC
15995738 TGTTTG
1 TGTTTG
15995744 ACAGCATGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 19 0.45
43 20 0.48
44 3 0.07
ACGTcount: A:0.21, C:0.10, G:0.34, T:0.35
Consensus pattern (43 bp):
TGTTTGGCTGCAGGATATGGGGATTCTAAGGCTGGAATAGAAC
Found at i:15995876 original size:16 final size:15
Alignment explanation
Indices: 15995851--15995915 Score: 76
Period size: 16 Copynumber: 4.0 Consensus size: 15
15995841 AATATTTAAC
15995851 TAAAATAAAATAAAAA
1 TAAAA-AAAATAAAAA
15995867 TAAAAGAAAATAATAAA
1 TAAAA-AAAATAA-AAA
*
15995884 TAATAAAAGATAAAAA
1 TAA-AAAAAATAAAAA
15995900 TAAATAAAAATAAAAA
1 TAAA-AAAAATAAAAA
15995916 GAAAGATTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
15 1 0.02
16 28 0.65
17 12 0.28
18 2 0.05
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.18
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:15995890 original size:20 final size:20
Alignment explanation
Indices: 15995857--15995906 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
15995847 TAACTAAAAT
15995857 AAAATAAA-AATAAAAGA-A
1 AAAATAAATAATAAAAGATA
15995875 AATAATAAATAATAAAAGATA
1 AA-AATAAATAATAAAAGATA
15995896 AAAATAAATAA
1 AAAATAAATAA
15995907 AAATAAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.07
19 6 0.21
20 18 0.62
21 3 0.10
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (20 bp):
AAAATAAATAATAAAAGATA
Found at i:16002413 original size:18 final size:18
Alignment explanation
Indices: 16002372--16002407 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
16002362 CCTAAATTTG
16002372 AATAATCCTAATAATTAT
1 AATAATCCTAATAATTAT
16002390 AATAATCCTAATAATTAT
1 AATAATCCTAATAATTAT
16002408 CTTAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AATAATCCTAATAATTAT
Found at i:16008035 original size:30 final size:30
Alignment explanation
Indices: 16008001--16008057 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
16007991 TAAAATTTGT
16008001 AAAT-GTTGGTGCAATAAAATTAATTTTCTA
1 AAATGGTT-GTGCAATAAAATTAATTTTCTA
*
16008031 AAATGGTTGTGCAATAAAATTATTTTT
1 AAATGGTTGTGCAATAAAATTAATTTT
16008058 TAGTAATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (30 bp):
AAATGGTTGTGCAATAAAATTAATTTTCTA
Found at i:16008436 original size:21 final size:20
Alignment explanation
Indices: 16008411--16008463 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
16008401 CAAAATTAGT
16008411 AGAAGGAA-AAAGAGAGAAAGA
1 AGAAGGAAGAAAG-GA-AAAGA
16008432 AGAAGGGAAGAAAGGAAAAGA
1 AGAA-GGAAGAAAGGAAAAGA
16008453 AGAA-GAAGAAA
1 AGAAGGAAGAAA
16008464 AATAAGGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.23
21 13 0.43
22 6 0.20
23 4 0.13
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AGAAGGAAGAAAGGAAAAGA
Found at i:16011801 original size:33 final size:33
Alignment explanation
Indices: 16011764--16011931 Score: 174
Period size: 33 Copynumber: 5.1 Consensus size: 33
16011754 AGAATGTCGA
* *
16011764 TGGATACGAGCCAGAAGGAACGGAGTACGGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
* *
16011797 TGGATACGAGCTAGAAAGAGCGGAGTACAGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
* ** *
16011830 TGGATATGAGCTAGAATAAGCGGAGTATGGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
* * ** **
16011863 TGGATACGAGTTGGAAGGAGTAGAGTATTGTGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
** * *
16011896 TGGATACGAGCCGGAATGAGCGGAGTACGATGG
1 TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
16011929 TGG
1 TGG
16011932 GCTGAAGATA
Statistics
Matches: 110, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 110 1.00
ACGTcount: A:0.29, C:0.10, G:0.42, T:0.19
Consensus pattern (33 bp):
TGGATACGAGCTAGAAGGAGCGGAGTACGGTGG
Found at i:16014518 original size:26 final size:28
Alignment explanation
Indices: 16014489--16014550 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
16014479 TATAATCTTA
16014489 AATTACTAAA-A-AAATAATTT-TAAAAT
1 AATTACTAAACACAAA-AATTTATAAAAT
*
16014515 AATTAC-AAACACAAAAATTTATCAAAT
1 AATTACTAAACACAAAAATTTATAAAAT
16014542 AATT-CTAAA
1 AATTACTAAA
16014551 TTACTAACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 3 0.10
26 13 0.42
27 15 0.48
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (28 bp):
AATTACTAAACACAAAAATTTATAAAAT
Found at i:16014607 original size:3 final size:3
Alignment explanation
Indices: 16014601--16014638 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
16014591 TAACCTTTTT
*
16014601 TTC TTC TTA TTC TTC TTTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC T
16014639 CTTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:16028961 original size:31 final size:32
Alignment explanation
Indices: 16028910--16028970 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
16028900 ATTCAAATCT
* * *
16028910 TTTTCAAAATGTTGATTGTCAACTTTAACTTG
1 TTTTCAAAAAGTTGAATGTCAAATTTAACTTG
16028942 TTTT-AAAAAGTTGAATGTCAAATTTAACT
1 TTTTCAAAAAGTTGAATGTCAAATTTAACT
16028971 AAAAAATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.44
Consensus pattern (32 bp):
TTTTCAAAAAGTTGAATGTCAAATTTAACTTG
Found at i:16033577 original size:22 final size:22
Alignment explanation
Indices: 16033552--16033599 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
16033542 TTTGCTGATA
*
16033552 TTTTATACAT-TTTTTTGAAAAC
1 TTTTAGACATATTTTTTG-AAAC
*
16033574 TTTTAGATATATTTTTTGAAAC
1 TTTTAGACATATTTTTTGAAAC
16033596 TTTT
1 TTTT
16033600 TTTAAATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTTTAGACATATTTTTTGAAAC
Found at i:16034601 original size:19 final size:20
Alignment explanation
Indices: 16034549--16034603 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
16034539 TTTTTAATAG
* *
16034549 TTTTTATAACTTTTGATATT
1 TTTTTATAATTTTTTATATT
**
16034569 TTTAAATAATTTTTTAT-TT
1 TTTTTATAATTTTTTATATT
16034588 TTTTTATAATTTTTTA
1 TTTTTATAATTTTTTA
16034604 AAAACTATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTATAATTTTTTATATT
Found at i:16034603 original size:10 final size:10
Alignment explanation
Indices: 16034549--16034603 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
16034539 TTTTTAATAG
*
16034549 TTTTTATAAC
1 TTTTTATAAT
*
16034559 TTTTGAT-AT
1 TTTTTATAAT
*
16034568 TTTTAAATAAT
1 TTTT-TATAAT
*
16034579 TTTTTAT-TT
1 TTTTTATAAT
16034588 TTTTTATAAT
1 TTTTTATAAT
16034598 TTTTTA
1 TTTTTA
16034604 AAAACTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
9 13 0.36
10 17 0.47
11 6 0.17
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:16036565 original size:8 final size:8
Alignment explanation
Indices: 16036552--16036576 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
16036542 CTCCTTAAAG
16036552 AATTTTAA
1 AATTTTAA
16036560 AATTTTAA
1 AATTTTAA
16036568 AATTTTAA
1 AATTTTAA
16036576 A
1 A
16036577 TTAGTGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:16036656 original size:25 final size:25
Alignment explanation
Indices: 16036626--16036674 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
16036616 ATAAAATTCT
* * *
16036626 GATTTAATCTTTTAAAAATTATAAA
1 GATTTAAGCTATTAAAAATCATAAA
*
16036651 GATTTAGGCTATTAAAAATCATAA
1 GATTTAAGCTATTAAAAATCATAA
16036675 TTTCAATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (25 bp):
GATTTAAGCTATTAAAAATCATAAA
Found at i:16039782 original size:31 final size:31
Alignment explanation
Indices: 16039723--16039802 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
16039713 ACACACATAT
*
16039723 ATATACTAAATAAAATAATAAAATAATAATAA
1 ATAT-CTAATTAAAATAATAAAATAATAATAA
* *
16039755 ATATCTTATTAAAAT-ATTAAATAAATAATAA
1 ATATCTAATTAAAATAATAAAAT-AATAATAA
*
16039786 TTATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
16039803 TATAAAGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 10 0.24
31 27 0.66
32 4 0.10
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAAAATAATAATAA
Found at i:16039788 original size:23 final size:23
Alignment explanation
Indices: 16039729--16039788 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
16039719 ATATATATAC
16039729 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
16039749 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
16039772 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
16039789 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:16052419 original size:16 final size:15
Alignment explanation
Indices: 16052380--16052428 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
16052370 TCAGTTTGAT
*
16052380 TTATTTTTAAATTTA
1 TTATTTTTATATTTA
*
16052395 TAATATTTTATATTATA
1 TTAT-TTTTATATT-TA
16052412 TTATTTTTATATATTA
1 TTATTTTTATAT-TTA
16052428 T
1 T
16052429 ATAATCTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 3 0.11
16 19 0.68
17 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATTTTTATATTTA
Found at i:16052938 original size:30 final size:30
Alignment explanation
Indices: 16052897--16052955 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
16052887 TGGAATTTTT
* * *
16052897 TCTTAACAATAATTTTAAAAAATTAAAAAA
1 TCTTAAAAATAAATATAAAAAATTAAAAAA
*
16052927 TCTTAAAAATAAATATAAAATATTAAAAA
1 TCTTAAAAATAAATATAAAAAATTAAAAA
16052956 TTATGTTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (30 bp):
TCTTAAAAATAAATATAAAAAATTAAAAAA
Found at i:16053051 original size:18 final size:20
Alignment explanation
Indices: 16053020--16053057 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
16053010 TTTTTAATAA
*
16053020 TTTATATTTATTTTTAAATT
1 TTTATATTTATTTTAAAATT
16053040 TTTA-ATTT-TTTTAAAATT
1 TTTATATTTATTTTAAAATT
16053058 GTTGTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTATATTTATTTTAAAATT
Found at i:16063350 original size:20 final size:21
Alignment explanation
Indices: 16063325--16063363 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
16063315 AATTTTATAA
*
16063325 TTAATTGAT-TGAGTATTAAC
1 TTAATTGATATGAATATTAAC
16063345 TTAATTGATATGAATATTA
1 TTAATTGATATGAATATTA
16063364 TTGTCAACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (21 bp):
TTAATTGATATGAATATTAAC
Found at i:16078642 original size:23 final size:23
Alignment explanation
Indices: 16078616--16078660 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
16078606 TATATACTAA
*
16078616 ATATATATATTTTATTTTTAATC
1 ATATATACATTTTATTTTTAATC
*
16078639 ATATTTACATTTTATTTTTAAT
1 ATATATACATTTTATTTTTAAT
16078661 TTTAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATATACATTTTATTTTTAATC
Found at i:16079922 original size:15 final size:15
Alignment explanation
Indices: 16079884--16079925 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
16079874 TATCGTACGT
16079884 ATTGAATTTTAATCA
1 ATTGAATTTTAATCA
* *
16079899 ATT-ATATTTTTATTA
1 ATTGA-ATTTTAATCA
16079914 ATTGAATTTTAA
1 ATTGAATTTTAA
16079926 GGAGAATTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (15 bp):
ATTGAATTTTAATCA
Done.