Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 65 of 318
Found at i:22988034 original size:8 final size:8
Alignment explanation
Indices: 22988023--22988051 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
22988013 AAGGTAAAAC
22988023 TTTTTTTA
1 TTTTTTTA
22988031 TTTTTTTA
1 TTTTTTTA
22988039 TTTTTTTA
1 TTTTTTTA
22988047 TTTTT
1 TTTTT
22988052 AGTTAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:22989315 original size:87 final size:86
Alignment explanation
Indices: 22989214--22989480 Score: 322
Period size: 87 Copynumber: 3.1 Consensus size: 86
22989204 TTGATTTTGA
* * *
22989214 TGAAAAACAGAAATTAAAAATACCTTAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGAAAAACAGAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
22989279 TTGATTTTTTTGAAACATAATT
66 TTGATTTTTTTG-AACAGAAAT
* * * *
22989301 TGAAGAACAGAAATTAAAATTACCTCAACGCGTCCTGAGGCTCAACTCACCTTTCGCAATATGAG
1 TGAAAAACAGAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*** *
22989366 TTGATTTTGACGAACGGAAAT
66 TTGATTTTTTTGAACAGAAAT
* * * *
22989387 TAAAAAACAGAAATTGAAAATACCTCACCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTAAAAATACCTCA--ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
22989451 GAGTTGATTTTTTTTGAACAGAAAT
63 GAGTTGA-TTTTTTTGAACAGAAAT
22989476 T-AAAA
1 TGAAAA
22989481 TTACTTCAAC
Statistics
Matches: 151, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
86 29 0.19
87 67 0.44
88 39 0.26
89 16 0.11
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (86 bp):
TGAAAAACAGAAATTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAACAGAAAT
Found at i:22989450 original size:88 final size:85
Alignment explanation
Indices: 22989216--22989636 Score: 289
Period size: 87 Copynumber: 5.0 Consensus size: 85
22989206 GATTTTGATG
* *
22989216 AAAAACAGAAATTAAAAATACCTTAGC-GTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATT-AAAATACCTCA-CAGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*** * * *
22989280 TGATTTTTTTGAAACATAATTTG
63 TGATTTTGACGAAACAGAAATTA
* * *
22989303 AAGAACAGAAATTAAAATTACCTCA-ACGCGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGT
1 AAAAACAGAAATTAAAA-TACCTCACA-GTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGT
*
22989367 TGATTTTGACG-AACGGAAATTA
63 TGATTTTGACGAAACAGAAATTA
*
22989389 AAAAACAGAAATTGAAAATACCTCACCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATT-AAAATACCTCA-CA-GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAG
***
22989454 TTGATTTTTTTTG-AACAGAAATTA
62 TTGA-TTTTGACGAAACAGAAATTA
* * * *
22989478 AAATTAC-----TTCAACAT--GT--C--T-T--GAGGCTCAACTCACCC-TCGCAATATGAGTT
1 AAA-AACAGAAATT-AAAATACCTCACAGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
22989528 GATTTTTGA--AAACA-AAAATA
64 GA-TTTTGACGAAACAGAAATTA
* * *
22989548 AAAAATAGAAATTGAAAATACCTCAGCA-TGTCCGAGGTTCAAATCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATT-AAAATACCTCA-CAGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
22989612 GATTTTTGA--AAGACAGAAATTA
64 GA-TTTTGACGAA-ACAGAAATTA
22989634 AAA
1 AAA
22989637 CATCCGAGTA
Statistics
Matches: 267, Mismatches: 39, Indels: 57
0.74 0.11 0.16
Matches are distributed among these distances:
69 1 0.00
70 8 0.03
71 4 0.01
72 21 0.08
73 15 0.06
74 6 0.02
76 1 0.00
77 1 0.00
79 1 0.00
80 2 0.01
81 1 0.00
83 14 0.05
84 25 0.09
85 9 0.03
86 40 0.15
87 61 0.23
88 35 0.13
89 20 0.07
90 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (85 bp):
AAAAACAGAAATTAAAATACCTCACAGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTGACGAAACAGAAATTA
Found at i:22989611 original size:84 final size:85
Alignment explanation
Indices: 22989470--22989636 Score: 232
Period size: 84 Copynumber: 2.0 Consensus size: 85
22989460 TTTTTTGAAC
* * *
22989470 AGAAATTAAAATTACTTCAACATGTCTTGAGGCTCAACTCACCCTCGCAATATGAGTTGATTTTT
1 AGAAATTAAAATTACCTCAACATGTCTCGAGGCTCAAATCACCCTCGCAATATGAGTTGATTTTT
22989535 GAAA-ACAAAAATAAAAAAT
66 GAAAGACAAAAATAAAAAAT
* *
22989554 AGAAATTGAAAA-TACCTCAGCATGTC-CGAGGTTCAAATCACCTCTCGCAATATGAGTTGATTT
1 AGAAATT-AAAATTACCTCAACATGTCTCGAGGCTCAAATCACC-CTCGCAATATGAGTTGATTT
* *
22989617 TTGAAAGACAGAAATTAAAA
64 TTGAAAGACAAAAATAAAAA
22989637 CATCCGAGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
83 13 0.18
84 45 0.62
85 15 0.21
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (85 bp):
AGAAATTAAAATTACCTCAACATGTCTCGAGGCTCAAATCACCCTCGCAATATGAGTTGATTTTT
GAAAGACAAAAATAAAAAAT
Found at i:22989628 original size:156 final size:159
Alignment explanation
Indices: 22989299--22989636 Score: 470
Period size: 161 Copynumber: 2.1 Consensus size: 159
22989289 TGAAACATAA
* *
22989299 TTTGAAGAACAGAAATTAAAATTACCTCAACGCGTCCTGAGGCTCAACTCACCTTTCGCAATATG
1 TTTGAAGAACAGAAATTAAAATTACCTCAACACGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
22989364 AGTTGATTTTGACGAACGGAAATTAAAAAACAGAAATTGAAAATACCTCACCATGTGAGCCGAGG
66 AGTTGATTTTGACAAACGAAAAATAAAAAACAGAAATTGAAAATACCTCACCATGT--GCCGAGG
*
22989429 CTCAACTCACCTCTCGCAATATGAGTTGATT
129 CTCAAATCACCTCTCGCAATATGAGTTGATT
*** * * *
22989460 TTTTTTGAACAGAAATTAAAATTACTTCAACATGTCTTGAGGCTCAACTCACC-CTCGCAATATG
1 TTTGAAGAACAGAAATTAAAATTACCTCAACACGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
22989524 AGTTGATTTTTGA-AAAC-AAAAATAAAAAATAGAAATTGAAAATACCTCAGCATGT-CCGAGGT
66 AGTTGA-TTTTGACAAACGAAAAATAAAAAACAGAAATTGAAAATACCTCACCATGTGCCGAGGC
22989586 TCAAATCACCTCTCGCAATATGAGTTGATT
130 TCAAATCACCTCTCGCAATATGAGTTGATT
22989616 TTTGAA-AGACAGAAATTAAAA
1 TTTGAAGA-ACAGAAATTAAAA
22989637 CATCCGAGTA
Statistics
Matches: 157, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
155 1 0.01
156 51 0.32
159 34 0.22
160 19 0.12
161 52 0.33
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (159 bp):
TTTGAAGAACAGAAATTAAAATTACCTCAACACGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTGACAAACGAAAAATAAAAAACAGAAATTGAAAATACCTCACCATGTGCCGAGGCT
CAAATCACCTCTCGCAATATGAGTTGATT
Found at i:22990817 original size:55 final size:55
Alignment explanation
Indices: 22990747--22990857 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
22990737 CATCTGTCCA
*
22990747 TGACAGATTGTCTTCAAACGTTTTTCTTTGATAAGGTTTAGCTGGTCATATCGAG
1 TGACAGATTGTCTTCAAACGTTTTTCTTCGATAAGGTTTAGCTGGTCATATCGAG
22990802 TGACAGATTGTCTTCAAACGTTTTTCTTCGATAAGGTTTAGCTGGTCATATCGAG
1 TGACAGATTGTCTTCAAACGTTTTTCTTCGATAAGGTTTAGCTGGTCATATCGAG
22990857 T
1 T
22990858 TTGAACCTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.40
Consensus pattern (55 bp):
TGACAGATTGTCTTCAAACGTTTTTCTTCGATAAGGTTTAGCTGGTCATATCGAG
Found at i:23001729 original size:20 final size:21
Alignment explanation
Indices: 23001695--23001738 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
23001685 AAACATAATA
23001695 ATAGTATTAAAAAATATATAC
1 ATAGTATTAAAAAATATATAC
23001716 ATAGTATT-AAAAATATATAC
1 ATAGTATTAAAAAATATATAC
23001736 ATA
1 ATA
23001739 ATATATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (21 bp):
ATAGTATTAAAAAATATATAC
Found at i:23001743 original size:11 final size:11
Alignment explanation
Indices: 23001707--23001749 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
23001697 AGTATTAAAA
23001707 AATATATACAT
1 AATATATACAT
* *
23001718 AGTAT-TA-AA
1 AATATATACAT
23001727 AATATATACAT
1 AATATATACAT
23001738 AATATATACAT
1 AATATATACAT
23001749 A
1 A
23001750 TTAGAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
11 17 0.65
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (11 bp):
AATATATACAT
Found at i:23001770 original size:46 final size:47
Alignment explanation
Indices: 23001673--23001774 Score: 122
Period size: 47 Copynumber: 2.2 Consensus size: 47
23001663 ATAGGTATAT
*
23001673 ATATT-AAAATATAAACATAATAATAGTATTAAAAAATATATACATA
1 ATATTAAAAATATAAACATAATAATAATATTAAAAAATATATACATA
* * *
23001719 GTATTAAAAATATATACATAATATATACATATT-AGAAATA-ATA-ATA
1 ATATTAAAAATATAAACATAATA-ATA-ATATTAAAAAATATATACATA
23001765 ATATTAAAAA
1 ATATTAAAAA
23001775 CAACTATTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
46 16 0.33
47 19 0.40
48 9 0.19
49 4 0.08
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (47 bp):
ATATTAAAAATATAAACATAATAATAATATTAAAAAATATATACATA
Found at i:23001837 original size:20 final size:20
Alignment explanation
Indices: 23001692--23001854 Score: 73
Period size: 22 Copynumber: 7.5 Consensus size: 20
23001682 TATAAACATA
* *
23001692 ATAATAGTATTAAAAAATAT
1 ATAATAATATTAAAAAATAC
*
23001712 ATACATAGTATTAAAAATATATAC
1 ATA-ATAATATT-AAAA-A-ATAC
* *
23001736 ATAATATATACATATTAGAAATA-
1 ATAATA-AT--AT-TAAAAAATAC
23001759 ATAATAATATTAAAAACA-AC
1 ATAATAATATTAAAAA-ATAC
*
23001779 TATTAATAATACTACATAAATATAC
1 -A-TAATAATATTA-A-AAA-ATAC
*
23001804 A-CATATATATTTAAAAAATAC
1 ATAATA-ATA-TTAAAAAATAC
23001825 ATAATAATATT-AAAAATAC
1 ATAATAATATTAAAAAATAC
*
23001844 GTACATAATAT
1 ATA-ATAATAT
23001855 ATATACATAT
Statistics
Matches: 112, Mismatches: 12, Indels: 38
0.69 0.07 0.23
Matches are distributed among these distances:
19 15 0.13
20 15 0.13
21 17 0.15
22 25 0.22
23 15 0.13
24 17 0.15
25 3 0.03
26 4 0.04
27 1 0.01
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAATAATATTAAAAAATAC
Found at i:23001913 original size:27 final size:27
Alignment explanation
Indices: 23001850--23001939 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 27
23001840 ATACGTACAT
*
23001850 AATATATATACATATAATATAGTTATTAAA
1 AATATACATACA-AT-ATATAG-TATTAAA
* *
23001880 AAAATACATACAATATATAGTATTAAG
1 AATATACATACAATATATAGTATTAAA
23001907 AATATAC--ACAATATATATGGTATTAAA
1 AATATACATACAATATATA--GTATTAAA
23001934 AATATA
1 AATATA
23001940 GTATTAAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
25 10 0.19
27 25 0.47
28 6 0.11
29 2 0.04
30 10 0.19
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (27 bp):
AATATACATACAATATATAGTATTAAA
Found at i:23001943 original size:14 final size:15
Alignment explanation
Indices: 23001921--23001954 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
23001911 TACACAATAT
*
23001921 ATATGGTATT-AAAA
1 ATATAGTATTAAAAA
23001935 ATATAGTATTAAAAA
1 ATATAGTATTAAAAA
23001950 ATATA
1 ATATA
23001955 CATATAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (15 bp):
ATATAGTATTAAAAA
Found at i:23002414 original size:3 final size:3
Alignment explanation
Indices: 23002387--23002530 Score: 50
Period size: 3 Copynumber: 48.0 Consensus size: 3
23002377 GAATATATAC
* * * * *
23002387 ATA AT- ATA ATA TTA AGA AAA ATA ATA ATA ACA A-A A-A AAA ACTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * * *
23002430 TTA ATA ATA CTA TATA AT- ATA TATA AGTA TTA AGTA AAA ATA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA A-TA ATA A-TA ATA ATA ATA ATA
* * * *
23002478 ATA CTA ATG CTA ATAA ATA ATA A-A TATA ATA ATA ATA GTA ATA A-A
1 ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
23002523 AT- ATA ATA
1 ATA ATA ATA
23002531 GTATACATAT
Statistics
Matches: 103, Mismatches: 25, Indels: 26
0.67 0.16 0.17
Matches are distributed among these distances:
2 13 0.13
3 75 0.73
4 15 0.15
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:23002507 original size:22 final size:22
Alignment explanation
Indices: 23002381--23002530 Score: 63
Period size: 23 Copynumber: 6.4 Consensus size: 22
23002371 TTAAAAGAAT
*
23002381 ATATACATAAT-ATAATATTAAGAA
1 ATATA-ATAATAATAA-A-TAATAA
* * *
23002405 AAATAATAATAACAAA-AAAAA
1 ATATAATAATAATAAATAATAA
* * *
23002426 ACTATTAATAATACTATATAATAT
1 A-TA-TAATAATAATAAATAATAA
*
23002450 ATATAAGTATTAAGTAAAAATAATACTA
1 ATATAA-TAATAA-T--AAATAATA--A
**
23002478 ATACTAATGCTAATAAATAATAA
1 ATA-TAATAATAATAAATAATAA
*
23002501 ATATAATAATAAT-AGTAATAAA
1 ATATAATAATAATAAATAAT-AA
23002523 ATATAATA
1 ATATAATA
23002531 GTATACATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
21 10 0.10
22 22 0.23
23 26 0.27
24 12 0.12
25 8 0.08
26 7 0.07
27 1 0.01
28 7 0.07
29 3 0.03
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (22 bp):
ATATAATAATAATAAATAATAA
Found at i:23002528 original size:28 final size:29
Alignment explanation
Indices: 23002464--23002528 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 29
23002454 AAGTATTAAG
*
23002464 TAAAA-AT-AATACTAATACTAATGCTAA
1 TAAAATATAAATACTAATAATAATGCTAA
23002491 T-AAATAATAAATA-TAATAATAATAG-TAA
1 TAAAAT-ATAAATACTAATAATAAT-GCTAA
23002519 TAAAATATAA
1 TAAAATATAA
23002529 TAGTATACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
26 3 0.09
27 1 0.03
28 19 0.59
29 9 0.28
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (29 bp):
TAAAATATAAATACTAATAATAATGCTAA
Found at i:23015005 original size:131 final size:131
Alignment explanation
Indices: 23014768--23015010 Score: 371
Period size: 131 Copynumber: 1.9 Consensus size: 131
23014758 TAGAAAACAC
* *
23014768 GAGTGAAATTTCAAAGGAATATTTGATTATTTTGAACAAACGGGAAATCGAAACCTAGCATGATA
1 GAGTGAAATTTCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCTAGCACGATA
*
23014833 GGGCACTATTCCCCGAATTGCCAAACATCAAACATCACCTTCGTTTTGAAAAATCTTTAGAGACA
66 GGGCACGATTCCCCGAATTGCCAAACATCAAACATCACCTTCGTTTTGAAAAATCTTTAGAGACA
23014898 T
131 T
* * *
23014899 GAGTGAAATTTCGAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAA-CTCAGCACGAT
1 GAGTGAAATTTCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCT-AGCACGAT
* * * **
23014963 AGGGTACGATTTCCCGAATTGCCAAACATCGAACATTGCCTTCGTTTT
65 AGGGCACGATTCCCCGAATTGCCAAACATCAAACATCACCTTCGTTTT
23015011 TAAAGAATTT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.02
131 98 0.98
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
GAGTGAAATTTCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCTAGCACGATA
GGGCACGATTCCCCGAATTGCCAAACATCAAACATCACCTTCGTTTTGAAAAATCTTTAGAGACA
T
Found at i:23019026 original size:17 final size:17
Alignment explanation
Indices: 23019006--23019041 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
23018996 TAATTAACTT
23019006 AATTAAATTAATT-TCTC
1 AATTAAATT-ATTGTCTC
23019023 AATTAAATTATTGTCTC
1 AATTAAATTATTGTCTC
23019040 AA
1 AA
23019042 CCCAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (17 bp):
AATTAAATTATTGTCTC
Found at i:23020515 original size:29 final size:30
Alignment explanation
Indices: 23020480--23020537 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
23020470 ATGGCACATG
*
23020480 GCACATGCATTAA-TTCCTAGGGACATATT
1 GCACATGCATTAATTTCCAAGGGACATATT
*
23020509 GCACATGCATTAATTTCGAAGGGACATAT
1 GCACATGCATTAATTTCCAAGGGACATAT
23020538 CTATTCATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (30 bp):
GCACATGCATTAATTTCCAAGGGACATATT
Found at i:23031524 original size:48 final size:48
Alignment explanation
Indices: 23031370--23031517 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
23031360 ATATATACAC
* **
23031370 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
23031418 GGCTCATACATATTTCACATTAGCCTTTCGACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
23031466 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
23031514 ATCT
1 ATCT
23031518 TGTACATCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:23034337 original size:41 final size:42
Alignment explanation
Indices: 23034278--23034357 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
23034268 ATTTTGAGTC
*
23034278 CACACGGCCTGGCACACGGGCGTG-TGATTAGACCGTGTGAAA
1 CACACGGCCTGGCACACGGGCATGTTG-TTAGACCGTGTGAAA
* *
23034320 CACACGG-CTTGCACACGGGCATGTTGTTAGGCCGTGTG
1 CACACGGCCTGGCACACGGGCATGTTGTTAGACCGTGTG
23034358 TCCCCTGCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 25 0.74
42 9 0.26
ACGTcount: A:0.20, C:0.26, G:0.34, T:0.20
Consensus pattern (42 bp):
CACACGGCCTGGCACACGGGCATGTTGTTAGACCGTGTGAAA
Found at i:23036643 original size:27 final size:26
Alignment explanation
Indices: 23036613--23036674 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
23036603 AGATAATTAA
23036613 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
23036640 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
23036667 AATAAAAT
1 AATAAAAT
23036675 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:23038258 original size:15 final size:16
Alignment explanation
Indices: 23038238--23038267 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23038228 TTAATATCTG
23038238 AAAATAATAA-ATAAT
1 AAAATAATAAGATAAT
23038253 AAAATAATAAGATAA
1 AAAATAATAAGATAA
23038268 AATAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
AAAATAATAAGATAAT
Found at i:23042015 original size:10 final size:10
Alignment explanation
Indices: 23042000--23042031 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
23041990 TAAATACAAT
23042000 TAATTAAAGA
1 TAATTAAAGA
23042010 TAATTAAAGA
1 TAATTAAAGA
23042020 TAATTAAA-A
1 TAATTAAAGA
23042029 TAA
1 TAA
23042032 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:23050467 original size:18 final size:18
Alignment explanation
Indices: 23050444--23050536 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
23050434 CCCAACTACT
*
23050444 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
23050462 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
* *
23050480 GTATACGTGAATAGCACT
1 GTATACGTGAATAGTACC
*
23050498 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
23050516 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
23050534 GTA
1 GTA
23050537 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:23052764 original size:30 final size:31
Alignment explanation
Indices: 23052728--23052793 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
23052718 TCACGTCTTG
* *
23052728 TAATGAATGCT-ATATCATTTAGATATTATA-
1 TAATGAATG-TAATAACATTTAGATACTATAT
23052758 TAATGAATGTAATAACATTTAGATACTATAT
1 TAATGAATGTAATAACATTTAGATACTATAT
23052789 TAATG
1 TAATG
23052794 TAGCAGTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 1 0.03
30 26 0.81
31 5 0.16
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.41
Consensus pattern (31 bp):
TAATGAATGTAATAACATTTAGATACTATAT
Found at i:23052869 original size:34 final size:34
Alignment explanation
Indices: 23052804--23052894 Score: 130
Period size: 34 Copynumber: 2.7 Consensus size: 34
23052794 TAGCAGTTTA
* * * *
23052804 TAAAATATTTGATATGTATT-TAATGGTTATTGT
1 TAAAATTTTTTATATGAATTATGATGGTTATTGT
23052837 TAAAATTTTTTATATGAATTATGATGGTTATTGT
1 TAAAATTTTTTATATGAATTATGATGGTTATTGT
*
23052871 TAAAACTTTTTATATGAATTATGA
1 TAAAATTTTTTATATGAATTATGA
23052895 AGTTTATATT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
33 17 0.33
34 35 0.67
ACGTcount: A:0.35, C:0.01, G:0.13, T:0.51
Consensus pattern (34 bp):
TAAAATTTTTTATATGAATTATGATGGTTATTGT
Found at i:23054241 original size:7 final size:7
Alignment explanation
Indices: 23054229--23054254 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23054219 ATAATGAAAC
23054229 AAATTTT
1 AAATTTT
23054236 AAATTTT
1 AAATTTT
23054243 AAATTTT
1 AAATTTT
23054250 AAATT
1 AAATT
23054255 AAAAAGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:23054837 original size:75 final size:75
Alignment explanation
Indices: 23054709--23054858 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
23054699 CAATGGTAGT
* *
23054709 TCTATAAAATATTGCTATCAGTAGGAGTATTTTTTAAAACAATTACCTTTGAGAACATCACGTTG
1 TCTAAAAAATATTGCTATCAGTAGGAGTATTTTTTAAAACAACTACCTTTGAGAACATCACGTTG
*
23054774 GAAACAACTA
66 AAAACAACTA
*
23054784 TCTAAAAAATATTGCTATCAGTAGGAGTATTTTTTAAAACAACTACCTTTGAGAACATCATGTTG
1 TCTAAAAAATATTGCTATCAGTAGGAGTATTTTTTAAAACAACTACCTTTGAGAACATCACGTTG
23054849 AAAACAACTA
66 AAAACAACTA
23054859 CCTTAGGGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (75 bp):
TCTAAAAAATATTGCTATCAGTAGGAGTATTTTTTAAAACAACTACCTTTGAGAACATCACGTTG
AAAACAACTA
Found at i:23075033 original size:62 final size:62
Alignment explanation
Indices: 23074936--23075058 Score: 228
Period size: 62 Copynumber: 2.0 Consensus size: 62
23074926 CATTTCTTCC
23074936 TCCTCCTAGGAAAAATCAAGCAGAAACTAGTATTGCTATGCATTGTTCTTTGTTGTCGTTGA
1 TCCTCCTAGGAAAAATCAAGCAGAAACTAGTATTGCTATGCATTGTTCTTTGTTGTCGTTGA
* *
23074998 TCCTCCTAGGAAAAATCAAGCAGAAACTAGTATTGCTATGCTTTTTTCTTTGTTGTCGTTG
1 TCCTCCTAGGAAAAATCAAGCAGAAACTAGTATTGCTATGCATTGTTCTTTGTTGTCGTTG
23075059 CCTTTATTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (62 bp):
TCCTCCTAGGAAAAATCAAGCAGAAACTAGTATTGCTATGCATTGTTCTTTGTTGTCGTTGA
Found at i:23076552 original size:17 final size:17
Alignment explanation
Indices: 23076530--23076563 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23076520 ATCCACTAAT
*
23076530 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
23076547 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
23076564 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:23081191 original size:17 final size:17
Alignment explanation
Indices: 23081169--23081202 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23081159 ATCCACTAAT
*
23081169 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
23081186 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
23081203 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:23082907 original size:87 final size:88
Alignment explanation
Indices: 23082748--23082921 Score: 226
Period size: 87 Copynumber: 2.0 Consensus size: 88
23082738 CCTGATTTCA
* * * * * ** * *
23082748 TTGTGATCTTATTCTTCTATGATCTAACTATAATGATTCAACTATGCTAGATAAGCGGGGTGTAG
1 TTGTGATCTTATTCTTCTATGATCCAACTATAATAATTCAACCACGCTAGACAAGCAAGATGTAC
23082813 GTTCTTCATATTCATCCCATTCG
66 GTTCTTCATATTCATCCCATTCG
* *
23082836 TTGTGATCTTATTCTTCTAT-ATCCAACTATAGTAA-TCTAACCACGCTAGGCAAGCAAGATGTA
1 TTGTGATCTTATTCTTCTATGATCCAACTATAATAATTC-AACCACGCTAGACAAGCAAGATGTA
23082899 CGTTCTTCATATTCATCCCATTC
65 CGTTCTTCATATTCATCCCATTC
23082922 AATGGCTTGA
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
86 2 0.03
87 52 0.70
88 20 0.27
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (88 bp):
TTGTGATCTTATTCTTCTATGATCCAACTATAATAATTCAACCACGCTAGACAAGCAAGATGTAC
GTTCTTCATATTCATCCCATTCG
Found at i:23086092 original size:11 final size:11
Alignment explanation
Indices: 23086064--23086106 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
23086054 TTGACCTTTC
23086064 CAAGGTATGGG
1 CAAGGTATGGG
*
23086075 -TAGGTATGGG
1 CAAGGTATGGG
23086085 CAAGGTATGGG
1 CAAGGTATGGG
* *
23086096 AAAGGAATGGG
1 CAAGGTATGGG
23086107 GTATATTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.30, C:0.05, G:0.47, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:23086736 original size:20 final size:20
Alignment explanation
Indices: 23086720--23086794 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
23086710 TTGTTTTCTG
*
23086720 TTTAAATCGATTCTTTTCTGT
1 TTTAAATCGATTCTTTT-TGA
*
23086741 TTTAAATCGATTATTTATTG-
1 TTTAAATCGATTCTTT-TTGA
* * * *
23086761 TTTGAATTGATTCATCTTGA
1 TTTAAATCGATTCTTTTTGA
23086781 TTTAAATCGATTCT
1 TTTAAATCGATTCT
23086795 CTATAGATTA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
19 3 0.07
20 22 0.51
21 17 0.40
22 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.53
Consensus pattern (20 bp):
TTTAAATCGATTCTTTTTGA
Found at i:23090206 original size:4 final size:4
Alignment explanation
Indices: 23090199--23090233 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
23090189 ATATATATAT
* *
23090199 TATG TATG TATG TATG TATG CATG TATG TCTG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
23090234 ACCTGAATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:23090540 original size:2 final size:2
Alignment explanation
Indices: 23090533--23090563 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23090523 CTGTCTTTTA
23090533 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
23090564 TCAAATGGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23091352 original size:20 final size:20
Alignment explanation
Indices: 23091327--23091376 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
23091317 TGGCTTAAAA
23091327 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
23091347 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
23091364 GTGGTAGTGGATT
1 TTGGTAGTGGATT
23091377 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:23095991 original size:20 final size:20
Alignment explanation
Indices: 23095966--23096015 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
23095956 TGGCTTAAAA
23095966 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
23095986 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
23096003 GTGGTAGTGGATT
1 TTGGTAGTGGATT
23096016 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:23101472 original size:22 final size:21
Alignment explanation
Indices: 23101456--23101503 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
23101446 GGATTGATTA
23101456 GGATATTTTATACGATTTTATG
1 GGATATTTTATACGATTTTA-G
23101478 GGATATTTTATGA-GATTTTAAG
1 GGATATTTTAT-ACGATTTT-AG
23101500 GGAT
1 GGAT
23101504 TGATTATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.46
Consensus pattern (21 bp):
GGATATTTTATACGATTTTAG
Found at i:23102712 original size:39 final size:38
Alignment explanation
Indices: 23102694--23102840 Score: 204
Period size: 39 Copynumber: 3.8 Consensus size: 38
23102684 CCACGGCAAG
* *
23102694 GGCTAGATCTCATTATATTACCCTAGTATCTGCAATAA
1 GGCTAGATCTCATTATATTACCCTAGAATCTGCAACAA
*
23102732 GGCTAAATCTCATTATATTACCCCTAGAATCTGCAACAA
1 GGCTAGATCTCATTATATTA-CCCTAGAATCTGCAACAA
* * *
23102771 GGCTAGATCTCGTTATATTACTCGAGAATCTGCAACAAA
1 GGCTAGATCTCATTATATTACCCTAGAATCTGCAAC-AA
* *
23102810 TGCTAGATCTCATTATATTACCTTAGAATCT
1 GGCTAGATCTCATTATATTACCCTAGAATCT
23102841 ATAATAGATT
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
38 33 0.35
39 62 0.65
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (38 bp):
GGCTAGATCTCATTATATTACCCTAGAATCTGCAACAA
Found at i:23102775 original size:77 final size:77
Alignment explanation
Indices: 23102694--23102840 Score: 206
Period size: 77 Copynumber: 1.9 Consensus size: 77
23102684 CCACGGCAAG
* * *
23102694 GGCTAGATCTCATTATATTACCCTAGTATCTGCAA-TAAGGCTAAATCTCATTATATTACCCCTA
1 GGCTAGATCTCATTATATTACCCGAGAATCTGCAACAAAGGCTAAATCTCATTATATTA-CCCTA
23102758 GAATCTGCAACAA
65 GAATCTGCAACAA
* * * * *
23102771 GGCTAGATCTCGTTATATTACTCGAGAATCTGCAACAAATGCTAGATCTCATTATATTACCTTAG
1 GGCTAGATCTCATTATATTACCCGAGAATCTGCAACAAAGGCTAAATCTCATTATATTACCCTAG
23102836 AATCT
66 AATCT
23102841 ATAATAGATT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
77 41 0.67
78 20 0.33
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (77 bp):
GGCTAGATCTCATTATATTACCCGAGAATCTGCAACAAAGGCTAAATCTCATTATATTACCCTAG
AATCTGCAACAA
Found at i:23102865 original size:78 final size:77
Alignment explanation
Indices: 23102668--23102841 Score: 199
Period size: 77 Copynumber: 2.3 Consensus size: 77
23102658 ACCTATGTCA
* * ** * * *
23102668 TATATTA-CCCAAGAATCCACGGCAAGGGCTAGATCTCATTATATTACCCTAGTATCTGCAATAA
1 TATATTACCCCTAGAATCTACAACAA-GGCTAGATCTCATTATATTACCCGAGAATCTGCAAAAA
23102732 GGCTAAATCTCAT
65 GGCTAAATCTCAT
* * *
23102745 TATATTACCCCTAGAATCTGCAACAAGGCTAGATCTCGTTATATTACTCGAGAATCTGCAACAAA
1 TATATTACCCCTAGAATCTACAACAAGGCTAGATCTCATTATATTACCCGAGAATCTGCAA-AAA
* *
23102810 TGCTAGATCTCAT
65 GGCTAAATCTCAT
*
23102823 TATATTA-CCTTAGAATCTA
1 TATATTACCCCTAGAATCTA
23102842 TAATAGATTT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
77 48 0.59
78 33 0.41
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30
Consensus pattern (77 bp):
TATATTACCCCTAGAATCTACAACAAGGCTAGATCTCATTATATTACCCGAGAATCTGCAAAAAG
GCTAAATCTCAT
Found at i:23105769 original size:19 final size:19
Alignment explanation
Indices: 23105745--23105781 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
23105735 TATTTTTATA
23105745 TTATTAA-ATTATATTATTG
1 TTATTAATA-TATATTATTG
23105764 TTATTAATATATATTATT
1 TTATTAATATATATTATT
23105782 AATCCTAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
TTATTAATATATATTATTG
Found at i:23107694 original size:21 final size:20
Alignment explanation
Indices: 23107656--23107712 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
23107646 TCTTACAATA
23107656 TTTAATAATTTTTT-ATAATT
1 TTTAA-AATTTTTTAATAATT
*
23107676 TTCTAAATTTTTTTAATAATT
1 TT-TAAAATTTTTTAATAATT
*
23107697 TTTAAAACTTTTTAAT
1 TTTAAAATTTTTTAAT
23107713 TAAAATTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 21 0.66
21 11 0.34
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTAAAATTTTTTAATAATT
Found at i:23107700 original size:10 final size:10
Alignment explanation
Indices: 23107656--23107712 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
23107646 TCTTACAATA
23107656 TTTAATAATT
1 TTTAATAATT
*
23107666 TTTTATAATT
1 TTTAATAATT
*
23107676 TTCTAA-ATTTT
1 TT-TAATA-ATT
23107687 TTTAATAATT
1 TTTAATAATT
23107697 TTTAA-AACTT
1 TTTAATAA-TT
23107707 TTTAAT
1 TTTAAT
23107713 TAAAATTACT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
9 2 0.05
10 29 0.76
11 7 0.18
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTAATAATT
Found at i:23107708 original size:20 final size:21
Alignment explanation
Indices: 23107664--23107712 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
23107654 TATTTAATAA
* **
23107664 TTTTTTATAATTTTCTAAATT
1 TTTTTAATAATTTTCTAAAAC
23107685 TTTTTAATAATTTT-TAAAAC
1 TTTTTAATAATTTTCTAAAAC
23107705 TTTTTAAT
1 TTTTTAAT
23107713 TAAAATTACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTAATAATTTTCTAAAAC
Found at i:23119024 original size:3 final size:3
Alignment explanation
Indices: 23118998--23119084 Score: 53
Period size: 3 Copynumber: 30.3 Consensus size: 3
23118988 TTATTTAATT
* * *
23118998 TAA TAA T-A TAA T-A TCAA TTA -AA TAA TAA TAA CAA TAA CAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
23119041 TAA TTA -AA T-A TAA -AA CT-A TAA TAA TAAA TAA TAA GAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TAA TAA
23119084 T
1 T
23119085 TTAATATATT
Statistics
Matches: 64, Mismatches: 10, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
2 11 0.17
3 48 0.75
4 5 0.08
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:23119044 original size:21 final size:19
Alignment explanation
Indices: 23119018--23119084 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
23119008 ATATCAATTA
23119018 AATAATAATAACAATAACAAT
1 AATAATAATAA-AATAA-AAT
23119039 AATAAT--TAAATATAAAACT
1 AATAATAATAAA-ATAAAA-T
*
23119058 -ATAATAAT-AAATAATAAG
1 AATAATAATAAAATAA-AAT
23119076 AATAATAAT
1 AATAATAAT
23119085 TTAATATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
18 12 0.31
19 20 0.51
20 1 0.03
21 6 0.15
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (19 bp):
AATAATAATAAAATAAAAT
Found at i:23124916 original size:3 final size:3
Alignment explanation
Indices: 23124908--23124943 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
23124898 GCCTCCAAAG
23124908 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23124944 GCCAATCAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23128670 original size:20 final size:18
Alignment explanation
Indices: 23128630--23128673 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
23128620 TATTGTGTGT
*
23128630 TCTTT-TTTTTCTTTCAT
1 TCTTTCTTTTTCTTTCAA
23128647 TCTTTCTTTTTACTTTGCAA
1 TCTTTCTTTTT-CTTT-CAA
23128667 TCTTTCT
1 TCTTTCT
23128674 ATATTGCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 5 0.22
18 5 0.22
19 4 0.17
20 9 0.39
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.68
Consensus pattern (18 bp):
TCTTTCTTTTTCTTTCAA
Found at i:23129755 original size:21 final size:21
Alignment explanation
Indices: 23129725--23129764 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23129715 AAATATTTCA
23129725 TTTTAATATTTAT-AATTTTAT
1 TTTTAATA-TTATCAATTTTAT
*
23129746 TTTTACTATTATCAATTTT
1 TTTTAATATTATCAATTTT
23129765 CGAATTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTAATATTATCAATTTTAT
Found at i:23137388 original size:62 final size:62
Alignment explanation
Indices: 23137322--23137505 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
23137312 CACGTATCTC
*
23137322 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
23137384 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
23137446 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
23137506 TCGAGTTTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:23138764 original size:23 final size:22
Alignment explanation
Indices: 23138737--23138794 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
23138727 TTAGTGGAGG
* *
23138737 CCAAAAAAAAAGAACAAATAAAA
1 CCAAAAAAAAACAA-AAACAAAA
*
23138760 CCAAATAAAAAACAAAAGCAAAA
1 CCAAA-AAAAAACAAAAACAAAA
*
23138783 ACAAAAAAAAAC
1 CCAAAAAAAAAC
23138795 TCTACCAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 7 0.23
23 15 0.50
24 8 0.27
ACGTcount: A:0.78, C:0.16, G:0.03, T:0.03
Consensus pattern (22 bp):
CCAAAAAAAAACAAAAACAAAA
Found at i:23140396 original size:95 final size:95
Alignment explanation
Indices: 23140227--23140803 Score: 1064
Period size: 95 Copynumber: 6.0 Consensus size: 95
23140217 GCAGCGAAGC
23140227 AGATCAAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
23140292 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
23140323 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23140388 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
* * *
23140418 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTGAAGCCAATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23140483 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
23140513 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23140578 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
23140608 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
23140673 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
23140703 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
23140768 ATCTCCCTGTATTTGGCAGTGGAATGGATTGA
64 ATCTCCCTGCATTTGGCAGTGGAATAGATTGA
23140800 AGAT
1 AGAT
23140804 TGCAGATCTT
Statistics
Matches: 470, Mismatches: 9, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
95 395 0.84
96 5 0.01
97 70 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:23140852 original size:231 final size:231
Alignment explanation
Indices: 23140608--23141034 Score: 818
Period size: 231 Copynumber: 1.8 Consensus size: 231
23140598 AATAGATTGA
23140608 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23140673 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
*
23140738 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATGGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23140803 TTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAGC
196 TTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAGC
*
23140839 AGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
23140904 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
*
23140969 ATAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23141034 T
196 T
23141035 CGAAGATGGC
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
231 192 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (231 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
TTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAGC
Found at i:23140873 original size:326 final size:326
Alignment explanation
Indices: 23140513--23142118 Score: 2446
Period size: 326 Copynumber: 4.9 Consensus size: 326
23140503 AATAGATTGA
23140513 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
23140578 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
23140643 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATC
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATC
*
23140708 AAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
196 GAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
*
23140773 CCTGTATTTGGCAGTGGAATGGATTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAG
261 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAG
23140838 C
326 C
*
23140839 AGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
23140904 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC--CTGACT
*
23140969 ATAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
129 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
*
23141034 TCGAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
194 TCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
* *
23141097 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTTCCTGTATTTGGCAGCGA
259 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGA
23141162 AGC
324 AGC
*
23141165 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
23141230 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCTCTGACT
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACT
23141295 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
129 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23141360 TCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
194 TCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
* *
23141425 TCCCTGTATTTGGCAGTGGAATAGGTTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
259 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGA
23141490 AGC
324 AGC
23141493 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
23141558 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACGTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
*
23141623 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGCAGATC
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATC
*
23141688 AAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
196 GAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
* * *** * ** * *
23141753 CCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCGGATTTTACCTCCATGTGACTACA
261 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCA--TT-CCTGTATTTG---GCA
* * *
23141818 GTGGAGT
320 GCGAAGC
* ** ** ** * * * * * * * ** * *
23141825 ACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAAC
** * * *
23141889 T-TGCCTTCCTGTATTTGGCAG-CG---A-A--GCAGATCAAAGATGGCAGATTTTACCTCCCTG
61 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
*
23141946 ACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
126 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
23142011 AGATCGAAGATGGCAGAGTTTACCTCC--CTGACTACAGTGGAGTATATTGAAGCCGATAACTCT
191 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
23142074 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCT
256 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT
23142119 ATCTCCCTAA
Statistics
Matches: 1186, Mismatches: 77, Indels: 34
0.91 0.06 0.03
Matches are distributed among these distances:
326 678 0.57
328 434 0.37
329 7 0.01
330 1 0.00
331 12 0.01
332 15 0.01
333 1 0.00
334 17 0.01
335 17 0.01
336 4 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (326 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATC
GAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAG
C
Found at i:23141003 original size:97 final size:95
Alignment explanation
Indices: 23140839--23141129 Score: 528
Period size: 95 Copynumber: 3.0 Consensus size: 95
23140829 GCAGCGAAGC
23140839 AGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23140904 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
23140934 AGATCAAATATGGCAGATTTTACCTCCATGTGACTATAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC-T-TGACTACAGTGGAGTACATTGAAGCCGATAACTCT
23140999 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
23141031 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23141096 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
23141126 AGAT
1 AGAT
23141130 TTCAGATCTT
Statistics
Matches: 188, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
95 96 0.51
96 1 0.01
97 91 0.48
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:23141171 original size:231 final size:231
Alignment explanation
Indices: 23140934--23141360 Score: 827
Period size: 231 Copynumber: 1.8 Consensus size: 231
23140924 AATAGATTGA
* *
23140934 AGATCAAATATGGCAGATTTTACCTCCATGTGACTATAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
23140999 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACT
66 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACT
23141064 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23141129 TTTCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
196 TTTCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
23141165 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
23141230 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCTCTGACT
66 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACT
23141295 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23141360 T
196 T
23141361 CGAAGATGGC
Statistics
Matches: 193, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
231 193 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (231 bp):
AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACT
ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
TTTCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
Found at i:23141314 original size:95 final size:97
Alignment explanation
Indices: 23141165--23141457 Score: 545
Period size: 97 Copynumber: 3.0 Consensus size: 97
23141155 GCAGCGAAGC
*
23141165 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
23141230 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
23141262 AGATCGAAGATGGCAGATTTTACCT-C-TCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
23141325 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
23141357 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
23141422 ATCTCCCTGTATTTGGCAGTGGAATAGGTTGA
66 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
23141454 AGAT
1 AGAT
23141458 TGCAGATCTT
Statistics
Matches: 190, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
95 93 0.49
96 2 0.01
97 95 0.50
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (97 bp):
AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:23141505 original size:231 final size:229
Alignment explanation
Indices: 23141262--23141686 Score: 760
Period size: 231 Copynumber: 1.8 Consensus size: 229
23141252 AATAGATTGA
* *
23141262 AGATCGAAGATGGCAGATTTTACCTCTCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * *
23141327 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC--CTGACT
*
23141392 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGGTTGAAGA
129 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23141457 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
194 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
23141493 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
23141558 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACGTCCCTGACTAC
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
*
23141623 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGCAGAT
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
23141687 CAAAGATGGC
Statistics
Matches: 186, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
229 69 0.37
231 117 0.63
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
Found at i:23141546 original size:134 final size:134
Alignment explanation
Indices: 23141357--23142014 Score: 540
Period size: 134 Copynumber: 4.7 Consensus size: 134
23141347 AATAGATTGA
*
23141357 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* * *
23141422 ATCTCCCTGTATTTGGCAGTGGAATAGGTTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTGTATTTGGCAG
23141487 CGAAGC
129 CGAAGC
*
23141493 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * *
23141558 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACGTCCCTG-A-CT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTACCTCCCTGTATTT
* * * *
23141621 -ACAGTGGAGT
124 GGCAGCGAAGC
* * ** ** * * * * * * * * *
23141631 ACATTGAAGCCGATA-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGCAGATCAAAGATG
1 AGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTG-A-AGC--CGAT-
* * * * * * * * ** * * *
23141695 GCAGATTTTACCTCCATGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTATCTCCCT
58 --A-ACTCTATCTCCCTGT-ATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTCCCT
* *
23141756 GTATTTGGCAGTGGAATAGATTGA
118 GTATTTGGCAG-CG---A-A--GC
* *
23141780 AGATCGAAGATGGCGGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
23141845 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTGTATTTGGCAG
23141910 CGAAGC
129 CGAAGC
* *
23141916 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
23141981 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
23142015 CGAAGATGGC
Statistics
Matches: 399, Mismatches: 86, Indels: 76
0.71 0.15 0.14
Matches are distributed among these distances:
134 139 0.35
136 52 0.13
137 11 0.03
138 19 0.05
139 12 0.03
140 17 0.04
141 28 0.07
142 23 0.06
143 19 0.05
144 7 0.02
145 3 0.01
147 20 0.05
148 14 0.04
149 23 0.06
150 9 0.02
151 1 0.00
152 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTGTATTTGGCAGCG
AAGC
Found at i:23141605 original size:95 final size:96
Alignment explanation
Indices: 23141493--23141880 Score: 681
Period size: 97 Copynumber: 4.0 Consensus size: 96
23141483 GCAGCGAAGC
23141493 AGATCAAAGATGGCAGATTTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
23141557 TCTCCCTGTATCTGGCAGTGGAATAGATTGA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
23141588 AGATCAAAGATGGCAGATTTTACGTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
23141652 TCTCCCTGTATTTGGCAGTGGAATAGATTGC
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
23141683 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
23141748 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
65 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
23141780 AGATCGAAGATGGCGGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
23141845 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
65 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
23141877 AGAT
1 AGAT
23141881 TGCAGATCTT
Statistics
Matches: 283, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
95 118 0.42
97 165 0.58
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:23141759 original size:654 final size:653
Alignment explanation
Indices: 23140513--23142118 Score: 2440
Period size: 654 Copynumber: 2.5 Consensus size: 653
23140503 AATAGATTGA
*
23140513 AGATCAAAGATGGCAGATTTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
23140577 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
23140642 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
131 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
*
23140707 CAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCT
196 CGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCT
23140772 CCCTGTATTTGGCAGTGGAAT-GGATTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGA
261 CCCTGTATTTGGCAGTGGAATAGG-TTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGA
*
23140836 AGCAGATCAAAGATGGCAGATTTTACCTCCTTGACTACAGTGGAGTACATTGAAGCCGATAACTC
325 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTC
* * *
23140901 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCATGTG
390 TATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCA-CTG
*
23140966 ACTATAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
454 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
23141031 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
519 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * *
23141096 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT-T-TCAGATCTTGCCTTCC-TGT-ATTTGGC
584 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATATGGCAGATCTTACC-TCCATGTGA-CT-AC
23141157 AGCGAAGC
646 AGCGAAGC
23141165 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC-TGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
23141230 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCTCTGACT
65 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACT
23141295 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
130 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23141360 TCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
195 TCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
*
23141425 TCCCTGTATTTGGCAGTGGAATAGGTTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
260 TCCCTGTATTTGGCAGTGGAATAGGTTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGA
23141490 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTC
325 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTC
*
23141555 TATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACGTCC-CTGA
390 TATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCACTGA
*
23141619 CTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGCA
455 CTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAA
*
23141684 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
520 GATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
* *
23141749 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCGGATTTTACCTCCATGTGAC
583 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT-----ATGGCAGATCTTACCTCCATGTGAC
* * *
23141814 TACAGTGGAGT
643 TACAGCGAAGC
* ** ** ** * * * * * * * ** * *
23141825 ACATTGAAGCCGATA-ACTCTATCTCCCTGT-ATTTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 AGATCAAAGATGGCAGATTTTACCT-CCTGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAA
** * * *
23141888 CT-TGCCTTCCTGTATTTGGCAG-CG---A-A--GCAGATCAAAGATGGCAGATTTTACCTCCCT
61 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCT
*
23141945 GACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
126 GACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
* * *
23142010 AAGATCGAAGATGGCAGAGTTTACCTCC--CTGACTACAGTGGAGTATATTGAAGCCGATAACTC
191 AAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTC
* *
23142073 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCT
256 TATCTCCCTGTATTTGGCAGTGGAATAGGTTGAAGATTGCAGATCT
23142119 ATCTCCCTAA
Statistics
Matches: 880, Mismatches: 55, Indels: 38
0.90 0.06 0.04
Matches are distributed among these distances:
652 195 0.22
654 598 0.68
655 2 0.00
656 1 0.00
657 1 0.00
658 1 0.00
659 10 0.01
660 37 0.04
661 30 0.03
662 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (653 bp):
AGATCAAAGATGGCAGATTTTACCTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
CGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCT
CCCTGTATTTGGCAGTGGAATAGGTTGAAGATTGCAGATCTTGCATTCCTGTATTTGGCAGCGAA
GCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
ATCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCACTGAC
TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
ATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCT
CCCTGTATTTGGCAGTGGAATAGATTGAAGATATGGCAGATCTTACCTCCATGTGACTACAGCGA
AGC
Found at i:23141951 original size:423 final size:422
Alignment explanation
Indices: 23140187--23142109 Score: 2260
Period size: 423 Copynumber: 4.6 Consensus size: 422
23140177 GAAGTGGATC
23140187 GAAGA-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAAGATGGCAGATTTTAC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC-AAAGATGGCAGATTTTAC
*
23140251 CTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAAT
65 CTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
23140316 AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATA
130 AGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATA
*
23140381 ACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC-
195 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCT
* * * *
23140445 CTGACTACAATGGAGTACATTGAAGCCAATAATTCTATCTCCCTGCATTTGGCAGTGGAATAGAT
260 CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
*
23140510 TGAAGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAAC
325 TGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAAC
*
23140573 TCTATCTCCCTGCATTTGGCAGTGGAATAGATT
390 TCTATCTCCCTGTATTTGGCAGTGGAATAGATT
* * * * * * * * * ** ** **
23140606 GAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A
1 GAAGAT------T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGA
* * * * * * * * * * * *
23140667 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCAT
59 TTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCT
* * * * * * * * * *
23140732 GTGA-CT-ACAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATTTGGCAG
113 GT-ATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAG
* ** ** * * * *
23140787 TGGAATGGATTGAAGATTGCA-GA-TCT-TGCATTCCTGTATTTGGCAG-CG---A-A--GCAGA
174 TGGAGTACATTGAAG-CCG-ATAACTCTAT-C-TCCCTGTATTTGGCAGTGGAATAGATTGAAGA
23140842 TCAAAGATGGCAGATTTTACCTCCT-TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCT
235 TCAAAGATGGCAGATTTTACCTCCTCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCT
* *
23140906 CCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCATGTGACTAT
300 CCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTAC
23140971 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATT
365 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATT
* * * * * * * * * ** ** **
23141029 GAAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-A
1 GAAGAT------T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGA
* * * * * * * * ** *
23141090 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTTCAGAT--CT-TGCCTTCCTGTAT
59 TTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG----CCGATAACTCTATCTCCCTGTAT
* * *
23141152 TTGGCAG-CG---A-A--GCAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGT
117 TTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGT
*
23141210 ACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGG
180 ACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGG
23141275 CAGATTTTACCT-CTCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTT
245 CAGATTTTACCTCCTCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTT
*
23141339 GGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTAC
310 GGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTAC
*
23141404 ATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGGTT
375 ATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATT
23141452 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACC
*
23141517 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
*
23141582 GATTGAAGATCAAAGATGGCAGATTTTACGTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
131 GATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
*
23141647 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGCAGATCAAAGATGGCAGATTTTACCTCCAT
196 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC-T
*
23141712 GTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
260 CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
* *
23141777 TGAAGATCGAAGATGGCGGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAAC
325 TGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAAC
23141842 TCTATCTCCCTGTATTTGGCAGTGGAATAGATT
390 TCTATCTCCCTGTATTTGGCAGTGGAATAGATT
23141875 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACC
*
23141940 TCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
* * *
23142005 GATTGAAGATCGAAGATGGCAGAGTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAA
131 GATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
23142070 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
196 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
23142110 TACAGATCTA
Statistics
Matches: 1303, Mismatches: 130, Indels: 138
0.83 0.08 0.09
Matches are distributed among these distances:
410 3 0.00
412 2 0.00
413 5 0.00
414 3 0.00
415 4 0.00
416 58 0.04
417 44 0.03
418 12 0.01
419 21 0.02
420 15 0.01
421 209 0.16
422 14 0.01
423 777 0.60
424 22 0.02
425 21 0.02
426 4 0.00
427 36 0.03
428 19 0.01
429 4 0.00
430 1 0.00
432 17 0.01
433 11 0.01
434 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (422 bp):
GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACC
TCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
GATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCTC
TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATT
GAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATT
Found at i:23141973 original size:231 final size:230
Alignment explanation
Indices: 23141681--23142118 Score: 779
Period size: 231 Copynumber: 1.9 Consensus size: 230
23141671 GGAATAGATT
* *
23141681 GCAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACT
1 GCAGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTAAAGCCGATAACT
* * *
23141746 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCGGATTTTACCTCCATGT
65 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGAGTTTACCTCC--CT
23141811 GACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
128 GACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
*
23141876 AAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAA
193 AAGATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAA
23141914 GCAGATCAAAGATGGCAGATTTTACCTCC-CTGACTACAGTGGAGTACATTAAAGCCGATAACTC
1 GCAGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTAAAGCCGATAACTC
23141978 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGAGTTTACCTCCCTGAC
66 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGAGTTTACCTCCCTGAC
*
23142043 TACAGTGGAGTATATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
131 TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
23142108 ATTACAGATCT
196 ATTACAGATCT
23142119 ATCTCCCTAA
Statistics
Matches: 198, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
229 78 0.39
231 91 0.46
233 29 0.15
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (230 bp):
GCAGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTAAAGCCGATAACTC
TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGAGTTTACCTCCCTGAC
TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
ATTACAGATCTTGCCTTCCTGTATTTGGCAGCGAA
Found at i:23142033 original size:95 final size:95
Alignment explanation
Indices: 23141916--23142109 Score: 352
Period size: 95 Copynumber: 2.0 Consensus size: 95
23141906 GCAGCGAAGC
*
23141916 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGAGTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
23141981 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
23142011 AGATCGAAGATGGCAGAGTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGAGTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
23142076 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
23142106 AGAT
1 AGAT
23142110 TACAGATCTA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGAGTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:23145097 original size:26 final size:25
Alignment explanation
Indices: 23145062--23145110 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
23145052 ACCCCTAAGC
23145062 CATCAATGCTATACAAAATATTGAA
1 CATCAATGCTATACAAAATATTGAA
23145087 CATCATATGCTATACAAAATATTG
1 CATCA-ATGCTATACAAAATATTG
23145111 TAATCAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (25 bp):
CATCAATGCTATACAAAATATTGAA
Found at i:23147891 original size:30 final size:31
Alignment explanation
Indices: 23147812--23147881 Score: 113
Period size: 31 Copynumber: 2.2 Consensus size: 31
23147802 AGTGATTGGA
*
23147812 TTATTCAAAAAATTTTTATATAAGTGACAAGG
1 TTATT-AAAAAGTTTTTATATAAGTGACAAGG
*
23147844 TTATTAAAAAGTTTTTATTTAAGTGACAAGG
1 TTATTAAAAAGTTTTTATATAAGTGACAAGG
23147875 TTATTAA
1 TTATTAA
23147882 GTTTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 31 0.86
32 5 0.14
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.41
Consensus pattern (31 bp):
TTATTAAAAAGTTTTTATATAAGTGACAAGG
Found at i:23154939 original size:14 final size:14
Alignment explanation
Indices: 23154920--23154949 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
23154910 ATTGAGTTAG
23154920 TATTAAAGTTTTGT
1 TATTAAAGTTTTGT
23154934 TATTAAAGTTTTGT
1 TATTAAAGTTTTGT
23154948 TA
1 TA
23154950 GAAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (14 bp):
TATTAAAGTTTTGT
Found at i:23157039 original size:30 final size:31
Alignment explanation
Indices: 23157015--23157073 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
23157005 GTAAATACTT
* *
23157015 AAAATTTGAGGGACTAA-AGTGTAAATATGA
1 AAAAGTTGAAGGACTAATAGTGTAAATATGA
*
23157045 AAAAGTTGAAGGACTAATAGTGCAAATAT
1 AAAAGTTGAAGGACTAATAGTGTAAATAT
23157074 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.47, C:0.05, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAATAGTGTAAATATGA
Found at i:23157320 original size:23 final size:22
Alignment explanation
Indices: 23157294--23157353 Score: 54
Period size: 23 Copynumber: 2.7 Consensus size: 22
23157284 TTTAATTAGA
23157294 TAATTATTATTTATTTAATATTT
1 TAATTA-TATTTATTTAATATTT
* *
23157317 TAATAAGATATTTA-TTATTATTT
1 TAAT--TATATTTATTTAATATTT
23157340 T-ATTAT-TTTATTTA
1 TAATTATATTTATTTA
23157354 GTATATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
22 2 0.06
23 13 0.42
24 6 0.19
25 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TAATTATATTTATTTAATATTT
Found at i:23157326 original size:31 final size:31
Alignment explanation
Indices: 23157284--23157349 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
23157274 TTTATAGTTA
*
23157284 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
* *
23157315 TTTAATAAGATATTTATTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
23157346 TTTA
1 TTTA
23157350 TTTAGTATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:23164249 original size:46 final size:46
Alignment explanation
Indices: 23164197--23164420 Score: 281
Period size: 46 Copynumber: 4.8 Consensus size: 46
23164187 AATATTTGGG
*
23164197 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
23164243 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * * * *
23164289 CGTCTGAACTCGTTGAGTTGAGTTCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
*
23164336 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
23164382 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23164421 GCGGGTTACA
Statistics
Matches: 150, Mismatches: 23, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
45 1 0.01
46 115 0.77
47 33 0.22
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:23164360 original size:93 final size:93
Alignment explanation
Indices: 23164243--23164413 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
23164233 TGGATGCGAA
** *
23164243 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTT
*
23164308 GAGTTCGAGTTCGTGAAATGTAACTAGG
66 GAGTCCGAGTTCGTGAAATGTAACTAGG
* *
23164336 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTT
23164401 GAGTCCGAGTTCG
66 GAGTCCGAGTTCG
23164414 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAGG
Found at i:23171002 original size:20 final size:20
Alignment explanation
Indices: 23170986--23171033 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
23170976 TGATTGTTTG
23170986 AAAAATAATTTGCTTG-TAC
1 AAAAATAATTTGCTTGTTAC
*
23171005 ATAAATAATTTGCTTGTGTAC
1 AAAAATAATTTGCTTGT-TAC
*
23171026 ATAAATAA
1 AAAAATAA
23171034 ATAAATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 15 0.58
21 11 0.42
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAAATAATTTGCTTGTTAC
Found at i:23171010 original size:19 final size:21
Alignment explanation
Indices: 23170988--23171033 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
23170978 ATTGTTTGAA
23170988 AAATAATTTGC-T-TGTACAT
1 AAATAATTTGCTTGTGTACAT
23171007 AAATAATTTGCTTGTGTACAT
1 AAATAATTTGCTTGTGTACAT
23171028 AAATAA
1 AAATAA
23171034 ATAAATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 11 0.44
20 1 0.04
21 13 0.52
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (21 bp):
AAATAATTTGCTTGTGTACAT
Found at i:23171035 original size:4 final size:4
Alignment explanation
Indices: 23171026--23171050 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
23171016 GCTTGTGTAC
23171026 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
23171051 GGCTCAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:23175717 original size:3 final size:3
Alignment explanation
Indices: 23175699--23175769 Score: 58
Period size: 3 Copynumber: 24.0 Consensus size: 3
23175689 ATATAATACC
* * * * *
23175699 AAT AGT AAT AAT -AT AAT AAT GAC AA- AAGT AAC AAT AAT AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
23175743 AAT AAT AAT AAT AAT -AT CAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT
23175770 GATGATGATG
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
2 6 0.11
3 44 0.81
4 4 0.07
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23182610 original size:16 final size:17
Alignment explanation
Indices: 23182585--23182634 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
23182575 TTTTCTTACT
23182585 TTAT-TAAATTATTATA
1 TTATATAAATTATTATA
*
23182601 TTATAT-AATTATTATT
1 TTATATAAATTATTATA
* *
23182617 TTATTTAAATTATAATA
1 TTATATAAATTATTATA
23182634 T
1 T
23182635 GAATTATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATATAAATTATTATA
Found at i:23182795 original size:30 final size:32
Alignment explanation
Indices: 23182761--23182825 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
23182751 TACTTAAAAT
23182761 TTAAG-TA-AAAAGATATT-ATTATTATTATTA
1 TTAAGCTATAAAAGATATTAATTATTATTA-TA
**
23182791 TTAAGCTATAAATTATATTAATTATTATTATA
1 TTAAGCTATAAAAGATATTAATTATTATTATA
23182823 TTA
1 TTA
23182826 TGAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 5 0.17
31 2 0.07
32 13 0.43
33 10 0.33
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (32 bp):
TTAAGCTATAAAAGATATTAATTATTATTATA
Found at i:23182834 original size:32 final size:32
Alignment explanation
Indices: 23182773--23182837 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
23182763 AAGTAAAAAG
**
23182773 ATATTATTATTATTATTATTAAGCTATAAATT
1 ATATTATTATTATTATTATTAAGAAATAAATT
*
23182805 ATATTAATTATTATTA-TATTATGAAATAAATT
1 ATATT-ATTATTATTATTATTAAGAAATAAATT
23182837 A
1 A
23182838 AGAAAAGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 19 0.66
33 10 0.34
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (32 bp):
ATATTATTATTATTATTATTAAGAAATAAATT
Found at i:23186458 original size:6 final size:6
Alignment explanation
Indices: 23186423--23186472 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
23186413 CAAGGAGAAG
* *
23186423 AGAAAA AG-AAT AGAATAGA AGAAAA TGAAAA AGAAAA AGAAAA A-AAAA
1 AGAAAA AGAAAA AGAA-A-A AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
23186471 AG
1 AG
23186473 GAAAGGAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
5 9 0.25
6 21 0.58
7 2 0.06
8 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (6 bp):
AGAAAA
Found at i:23210129 original size:11 final size:11
Alignment explanation
Indices: 23210113--23210145 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
23210103 TCTAGAGTTT
23210113 TCTTCATTTTC
1 TCTTCATTTTC
23210124 TCTTCATTTTC
1 TCTTCATTTTC
23210135 T-TCTCATTTTC
1 TCT-TCATTTTC
23210146 ATCTGCTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 1 0.05
11 20 0.95
ACGTcount: A:0.09, C:0.27, G:0.00, T:0.64
Consensus pattern (11 bp):
TCTTCATTTTC
Found at i:23211424 original size:25 final size:25
Alignment explanation
Indices: 23211395--23211446 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
23211385 AAGAATAATT
**
23211395 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
23211420 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
23211445 TG
1 TG
23211447 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:23213735 original size:22 final size:23
Alignment explanation
Indices: 23213710--23213768 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
23213700 CAACCAAATC
23213710 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
23213732 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
23213755 ACATT-ATCACATAT
1 A-ATTCAT-ACATAT
23213769 CTAAAACCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 6 0.19
23 16 0.52
24 9 0.29
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:23219602 original size:34 final size:34
Alignment explanation
Indices: 23219564--23219631 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
23219554 AAGTTAGTCT
23219564 TTAAGGCATTTTTATTTGAGTTTTGATCTTTGTA
1 TTAAGGCATTTTTATTTGAGTTTTGATCTTTGTA
23219598 TTAAGGCATTTTTATTTGAGTTTTGATCTTTGTA
1 TTAAGGCATTTTTATTTGAGTTTTGATCTTTGTA
23219632 CTGGACCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.56
Consensus pattern (34 bp):
TTAAGGCATTTTTATTTGAGTTTTGATCTTTGTA
Found at i:23235299 original size:26 final size:26
Alignment explanation
Indices: 23235260--23235343 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
23235250 TGATACAAAT
* *
23235260 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
23235286 TGGTAATGGGTTAGGTAAATGTTTTA
1 TGATAATGGGTTAGGTAAATGTTTCA
23235312 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23235338 TGATAA
1 TGATAA
23235344 GAATTTCATG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:23241744 original size:18 final size:20
Alignment explanation
Indices: 23241721--23241757 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
23241711 AGTTAGCTGC
23241721 ATGAAGAA-GGA-GAAGGAA
1 ATGAAGAATGGATGAAGGAA
23241739 ATGAAGAATGGATGAAGGA
1 ATGAAGAATGGATGAAGGA
23241758 GAATTGGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 3 0.18
20 6 0.35
ACGTcount: A:0.51, C:0.00, G:0.38, T:0.11
Consensus pattern (20 bp):
ATGAAGAATGGATGAAGGAA
Found at i:23242119 original size:20 final size:18
Alignment explanation
Indices: 23242087--23242128 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
23242077 ATTATTAATT
*
23242087 AATTAATTTAATTAGATA
1 AATTAATTTAATTAAATA
23242105 AATTAATTTTCAATTAAATA
1 AATTAA-TTT-AATTAAATA
23242125 AATT
1 AATT
23242129 TCTCAACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 12 0.57
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
AATTAATTTAATTAAATA
Found at i:23243237 original size:18 final size:18
Alignment explanation
Indices: 23243191--23243267 Score: 73
Period size: 18 Copynumber: 4.0 Consensus size: 18
23243181 TATATTATTT
*
23243191 AAATATAAAAAATTATATATA
1 AAATATAAAATATTA-A-A-A
*
23243212 AAATATATAAATAATTCAAA
1 AAATATA-AAAT-ATTAAAA
*
23243232 AAATATAAAATTTTAAAA
1 AAATATAAAATATTAAAA
*
23243250 AAATATAAAATTTTAAAA
1 AAATATAAAATATTAAAA
23243268 TATGTAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
18 23 0.46
19 4 0.08
20 8 0.16
21 8 0.16
22 4 0.08
23 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATATAAAATATTAAAA
Found at i:23243565 original size:66 final size:64
Alignment explanation
Indices: 23243495--23243630 Score: 157
Period size: 66 Copynumber: 2.1 Consensus size: 64
23243485 AAAAAAATAA
* * *
23243495 AATTTGACCATTTTCAATTTTTATATAATCTTTT-ATTTTTTTAAAATCTATATTTATATATTTT
1 AATTTGA-CATTTTCAATTTTTATATAATATTTTGA-TTTTTT-AAATCTATAATTACATATTTT
23243559 AG
63 AG
* ** * *
23243561 AATTTTTATTTTTTCAATTTTTATGTAATATTTTGATTTTTTAAATTTATAATTACATATTTTAG
1 AA-TTTGACATTTTCAATTTTTATATAATATTTTGATTTTTTAAATCTATAATTACATATTTTAG
23243626 AATTT
1 AATTT
23243631 TGGGTTGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
64 3 0.05
65 22 0.37
66 30 0.50
67 5 0.08
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (64 bp):
AATTTGACATTTTCAATTTTTATATAATATTTTGATTTTTTAAATCTATAATTACATATTTTAG
Found at i:23243620 original size:29 final size:28
Alignment explanation
Indices: 23243562--23243623 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
23243552 ATATTTTAGA
* * *
23243562 ATTTTTATTTTTTCAATTTTTATGTAAT
1 ATTTTGATTTTTTAAATTTTAATGTAAT
23243590 ATTTTGATTTTTTAAATTTATAAT-TACAT
1 ATTTTGATTTTTTAAATTT-TAATGTA-AT
23243619 ATTTT
1 ATTTT
23243624 AGAATTTTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 19 0.66
29 10 0.34
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (28 bp):
ATTTTGATTTTTTAAATTTTAATGTAAT
Found at i:23244118 original size:38 final size:39
Alignment explanation
Indices: 23244025--23244118 Score: 88
Period size: 38 Copynumber: 2.5 Consensus size: 39
23244015 TAGTGGAAAG
*
23244025 TTAAA-AATTAAT-TAAATTATATAATATTTAAATAATT
1 TTAAATAATTAATATAAAGTATATAATATTTAAATAATT
* * * * *
23244062 TGATATAATGATACATAAAGTATA-AAT-TTTAAATATTTT
1 TTAAATAATTA-ATATAAAGTATATAATATTTAAATA-ATT
23244101 TTAAATAATTAATATAAA
1 TTAAATAATTAATATAAA
23244119 TTATTAGTAA
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
37 3 0.07
38 18 0.42
39 14 0.33
40 8 0.19
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (39 bp):
TTAAATAATTAATATAAAGTATATAATATTTAAATAATT
Found at i:23247500 original size:48 final size:49
Alignment explanation
Indices: 23247428--23247521 Score: 138
Period size: 48 Copynumber: 1.9 Consensus size: 49
23247418 ATATATTTAT
* *
23247428 AGGTTGAAAACCCTTATTCTAATCAATGTCAAATAGAAACAGTGTAATA
1 AGGTTGAAAACCCTTATTCTAATCAATATCAAATAAAAACAGTGTAATA
*
23247477 AGGTTG-AAACACCTT-TTCTAATCAATATCAAATAAAAAGAGTGTA
1 AGGTTGAAAAC-CCTTATTCTAATCAATATCAAATAAAAACAGTGTA
23247522 CTTCTATACG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
48 31 0.76
49 10 0.24
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.29
Consensus pattern (49 bp):
AGGTTGAAAACCCTTATTCTAATCAATATCAAATAAAAACAGTGTAATA
Found at i:23247772 original size:120 final size:120
Alignment explanation
Indices: 23247559--23247800 Score: 398
Period size: 120 Copynumber: 2.0 Consensus size: 120
23247549 TTGGCCTTCG
* *
23247559 CCCCCACAGATCCCCTTATTTTGTCACTGTATTTTATTTCTTTAACAGGAATTTGGGTCACACAA
1 CCCCCACAGATCCCCCTATTTTGCCACTGTATTTTATTTCTTTAACAGGAATTTGGGTCACACAA
*
23247624 CTCTAACAATTTCCTCCTTAACACGAATTCTCAACGAACAAGTTCTCCACCCCTT
66 CTCTAACAATTTCCTCCTTAACAAGAATTCTCAACGAACAAGTTCTCCACCCCTT
* *
23247679 CCCCCACAGATCCCCCTATTTTGCCACTGTATTTTATTTCTTTAACTGGAATTTGGGTCATACAA
1 CCCCCACAGATCCCCCTATTTTGCCACTGTATTTTATTTCTTTAACAGGAATTTGGGTCACACAA
*
23247744 CTCTAACAATCTT-CTCCTTGAA-AAGAATTCTCAACGAACAAGTTCTCCACCTCTT
66 CTCTAACAAT-TTCCTCCTT-AACAAGAATTCTCAACGAACAAGTTCTCCACCCCTT
23247799 CC
1 CC
23247801 ACAAAACCCC
Statistics
Matches: 114, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
120 110 0.96
121 4 0.04
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (120 bp):
CCCCCACAGATCCCCCTATTTTGCCACTGTATTTTATTTCTTTAACAGGAATTTGGGTCACACAA
CTCTAACAATTTCCTCCTTAACAAGAATTCTCAACGAACAAGTTCTCCACCCCTT
Found at i:23250040 original size:41 final size:39
Alignment explanation
Indices: 23249992--23250103 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 39
23249982 TCGACCTTGA
23249992 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
23250032 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
23250070 GCCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
23250104 AACTATCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 7 0.13
40 2 0.04
41 17 0.31
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:23250830 original size:17 final size:17
Alignment explanation
Indices: 23250781--23250831 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
23250771 ATGTGGCATG
*
23250781 TACCTAAGTAATGTACA
1 TACCTAAGTAATGTATA
23250798 TACCT-AGATAATGTATA
1 TACCTAAG-TAATGTATA
*
23250815 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
23250832 GGGATTAGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 2 0.07
17 26 0.87
18 2 0.07
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:23253176 original size:29 final size:28
Alignment explanation
Indices: 23253143--23253198 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
23253133 TGCGAGTTAT
* *
23253143 ACTGATTTGGGTTCGGGCTATGAATATCG
1 ACTGATTTGGCTTCAGGCTATG-ATATCG
23253172 ACTGATTTGGCTTCAGGCTATGATATC
1 ACTGATTTGGCTTCAGGCTATGATATC
23253199 AGTATTTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (28 bp):
ACTGATTTGGCTTCAGGCTATGATATCG
Found at i:23270741 original size:31 final size:31
Alignment explanation
Indices: 23270687--23270767 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
23270677 TCACTTAATT
* * * *
23270687 AAAAAGATTATAATTTAGGAATTAAATTATTC
1 AAAAA-ATTTTAATTAAGTAATTAAACTATTC
*
23270719 AAAAAATTTTATTTAAGTAATTAAACTATTC
1 AAAAAATTTTAATTAAGTAATTAAACTATTC
**
23270750 AAAAGTTTTTAATTAAGT
1 AAAAAATTTTAATTAAGT
23270768 CAATAGGTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 36 0.88
32 5 0.12
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (31 bp):
AAAAAATTTTAATTAAGTAATTAAACTATTC
Found at i:23274352 original size:101 final size:101
Alignment explanation
Indices: 23274247--23274473 Score: 409
Period size: 101 Copynumber: 2.2 Consensus size: 101
23274237 ACACTGATCA
* * *
23274247 CATTTATCACTTGTTACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
23274312 CATTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
66 CATTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
* *
23274348 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTATCACTTGT
1 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
23274413 CATTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
66 CATTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
23274449 CATTTGTCACTTATCACTGATCAGA
1 CATTTGTCACTTATCACTGATCAGA
23274474 AGTACTCAAA
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 121 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (101 bp):
CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
CATTGATCAGATAAGAGTAGCTAAGCTACCACTTAT
Found at i:23274359 original size:50 final size:51
Alignment explanation
Indices: 23274247--23274473 Score: 323
Period size: 50 Copynumber: 4.5 Consensus size: 51
23274237 ACACTGATCA
* *
23274247 CATTTATCACTTGTTACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTAT
* *
23274298 CACTTATCACTTGTCATTGATCAGATAAGAGTAGCT-AAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTAT
* * * * *
23274348 CATTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTAT
* *
23274399 CACTTATCACTTGTCATTGATCAGATAAGAGTAGCT-AAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTAT
* *
23274449 CATTTGTCACTTATCACTGATCAGA
1 CATTTATCACTTGTCACTGATCAGA
23274474 AGTACTCAAA
Statistics
Matches: 155, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
50 79 0.51
51 76 0.49
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (51 bp):
CATTTATCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTAT
Found at i:23276110 original size:21 final size:21
Alignment explanation
Indices: 23276086--23276137 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
23276076 CTTTTTATTC
23276086 AATTAAC-TATCGAAACTTTAA
1 AATTAACTTA-CGAAACTTTAA
*
23276107 AATT-TCTTGACGAAACTTTAA
1 AATTAACTT-ACGAAACTTTAA
*
23276128 AACTAACTTA
1 AATTAACTTA
23276138 TTAACACTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
20 1 0.04
21 20 0.80
22 4 0.16
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (21 bp):
AATTAACTTACGAAACTTTAA
Found at i:23277307 original size:62 final size:62
Alignment explanation
Indices: 23277160--23277314 Score: 222
Period size: 62 Copynumber: 2.5 Consensus size: 62
23277150 GGAATTGACG
* *
23277160 GTAAAAAGGATCTAGCCCGGATGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATATGT
1 GTAAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATACGT
** *
23277222 GTAAAAAGGATCTAGCATGGACGGGTGATCCTATTCTGATATAGCCCTCCCGAAGAATACGT
1 GTAAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATACGT
* * *
23277284 GTAAAATA-GATTTAGCCCAGACGGGTAATCC
1 GTAAAA-AGGATCTAGCCCGGACGGGTGATCC
23277315 GAATTAGGGT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
62 81 0.99
63 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (62 bp):
GTAAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATACGT
Found at i:23277564 original size:38 final size:39
Alignment explanation
Indices: 23277508--23277673 Score: 172
Period size: 46 Copynumber: 3.9 Consensus size: 39
23277498 CTGATATGAA
*
23277508 ATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
23277547 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
*
23277592 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
23277631 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
23277674 ATGACAGAAA
Statistics
Matches: 109, Mismatches: 3, Indels: 23
0.81 0.02 0.17
Matches are distributed among these distances:
38 35 0.32
39 1 0.01
41 4 0.04
43 1 0.01
44 1 0.01
45 1 0.01
46 66 0.61
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:23277614 original size:46 final size:46
Alignment explanation
Indices: 23277550--23277717 Score: 230
Period size: 46 Copynumber: 3.7 Consensus size: 46
23277540 CAACCTGTGT
* * * *
23277550 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
* *
23277596 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
*
23277642 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGA
* * *
23277688 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
23277718 TCACGTCAAA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 108 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
Found at i:23277832 original size:13 final size:13
Alignment explanation
Indices: 23277816--23277848 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
23277806 AATGGTTATA
23277816 TGAAATGGCTGTG
1 TGAAATGGCTGTG
23277829 TGAAATGGCTGTG
1 TGAAATGGCTGTG
23277842 TGAAATG
1 TGAAATG
23277849 TTTACAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.27, C:0.06, G:0.36, T:0.30
Consensus pattern (13 bp):
TGAAATGGCTGTG
Found at i:23279896 original size:51 final size:51
Alignment explanation
Indices: 23279837--23279939 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
23279827 TAAGGTTGCT
23279837 TGACCAAATGATTAATGAATGAATAACCTTAAACATGATTTTAATCAAACA
1 TGACCAAATGATTAATGAATGAATAACCTTAAACATGATTTTAATCAAACA
23279888 TGACCAAATGATTAATGAATGAATAACCTTAAACATGATTTTAATCAAACA
1 TGACCAAATGATTAATGAATGAATAACCTTAAACATGATTTTAATCAAACA
23279939 T
1 T
23279940 ATAAACATGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.30
Consensus pattern (51 bp):
TGACCAAATGATTAATGAATGAATAACCTTAAACATGATTTTAATCAAACA
Found at i:23282357 original size:3 final size:3
Alignment explanation
Indices: 23282349--23282392 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
23282339 TTAAGGAGAC
* * *
23282349 GGT GGT GGT GGT GGT GGT GGT GGT TGT GGT TGT GGT TGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
23282393 CGCTTATTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.61, T:0.39
Consensus pattern (3 bp):
GGT
Found at i:23293158 original size:25 final size:25
Alignment explanation
Indices: 23293120--23293171 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
23293110 AATATAATTT
*
23293120 TTATATTTTATAAA-GTTATAAAAAA
1 TTATATTTTATAAATCTTA-AAAAAA
23293145 TTATATTATT-TAAATCTTAAAAAAA
1 TTATATT-TTATAAATCTTAAAAAAA
23293170 TT
1 TT
23293172 CCTAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
TTATATTTTATAAATCTTAAAAAAA
Found at i:23298172 original size:6 final size:6
Alignment explanation
Indices: 23298161--23298194 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
23298151 GTTTCCTCCT
23298161 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC
1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC
23298195 TTCTCTTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
CTTCCC
Found at i:23310345 original size:17 final size:16
Alignment explanation
Indices: 23310308--23310356 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 16
23310298 ATAGATTAAG
23310308 TTATTTTATTAGAATA
1 TTATTTTATTAGAATA
* *
23310324 ATATTTTATTATTAATA
1 TTATTTTATTA-GAATA
*
23310341 TTATTATATT-GAATA
1 TTATTTTATTAGAATA
23310356 T
1 T
23310357 AGATTTATGA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 5 0.19
16 10 0.37
17 12 0.44
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (16 bp):
TTATTTTATTAGAATA
Found at i:23330140 original size:6 final size:6
Alignment explanation
Indices: 23330131--23330164 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
23330121 AGGAAGAGAA
23330131 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAG
23330165 AGGAGGAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:23335194 original size:26 final size:25
Alignment explanation
Indices: 23335152--23335204 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
23335142 AAAATTTAGG
23335152 AATTTTTTTAAGATTTA-AATAATAT
1 AATTTTTTTAAGATTTATAA-AATAT
23335177 AATTTTTTTATA-ACTTTATAAAATAT
1 AATTTTTTTA-AGA-TTTATAAAATAT
23335203 AA
1 AA
23335205 AAATTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 11 0.44
26 12 0.48
27 2 0.08
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
AATTTTTTTAAGATTTATAAAATAT
Found at i:23345051 original size:24 final size:21
Alignment explanation
Indices: 23345015--23345058 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
23345005 ATATACAATA
*
23345015 TATAATAGATAATGACAAAAATT
1 TATAAAAGATAAT-A-AAAAATT
23345038 TATAAAAGAATAATAAAAAAT
1 TATAAAAG-ATAATAAAAAAT
23345059 ATTGGTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 8 0.42
24 5 0.26
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
TATAAAAGATAATAAAAAATT
Found at i:23345375 original size:23 final size:23
Alignment explanation
Indices: 23345349--23345428 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
23345339 AAAAAATGAC
23345349 ATAATATAAAATAATTATAATAT
1 ATAATATAAAATAATTATAATAT
23345372 ATAATATGAAAGTATATATGTAT-ATA-
1 ATAATAT-AAA--ATA-AT-TATAATAT
23345398 AT-ATATATAAATAATTAATAAATAT
1 ATAATATA-AAATAATT-AT-AATAT
23345423 ATAATA
1 ATAATA
23345429 CAAGTAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 19
0.71 0.00 0.29
Matches are distributed among these distances:
21 1 0.02
22 4 0.09
23 10 0.22
24 7 0.15
25 8 0.17
26 8 0.17
27 5 0.11
28 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
ATAATATAAAATAATTATAATAT
Found at i:23345411 original size:13 final size:13
Alignment explanation
Indices: 23345385--23345474 Score: 52
Period size: 13 Copynumber: 7.2 Consensus size: 13
23345375 ATATGAAAGT
* *
23345385 ATATATGTATATA
1 ATATATATAAATA
23345398 ATATATATAAATA
1 ATATATATAAATA
23345411 AT-TA-ATAAAT-
1 ATATATATAAATA
23345421 ATATA-ATACAAGTA
1 ATATATATA-AA-TA
23345435 A-A-ATAT-AATA
1 ATATATATAAATA
*
23345445 ATAATATCTAAATA
1 AT-ATATATAAATA
*
23345459 ATA-ATGTAAAATA
1 ATATATAT-AAATA
23345472 ATA
1 ATA
23345475 ATGTTTTGTG
Statistics
Matches: 63, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
10 5 0.08
11 13 0.21
12 9 0.14
13 29 0.46
14 7 0.11
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (13 bp):
ATATATATAAATA
Found at i:23345475 original size:13 final size:13
Alignment explanation
Indices: 23345454--23345478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23345444 AATAATATCT
23345454 AAATAATAATGTA
1 AAATAATAATGTA
23345467 AAATAATAATGT
1 AAATAATAATGT
23345479 TTTGTGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
AAATAATAATGTA
Found at i:23345532 original size:17 final size:18
Alignment explanation
Indices: 23345490--23345559 Score: 67
Period size: 17 Copynumber: 4.0 Consensus size: 18
23345480 TTGTGAAAAG
23345490 TAATATATAATAAATAACAA
1 TAATATATAATAAAT-A-AA
23345510 TAATATATAATAAAT-AA
1 TAATATATAATAAATAAA
* *
23345527 TTATATATAATATA-AAA
1 TAATATATAATAAATAAA
*
23345544 TAAGAT-TAA-AAATAAA
1 TAATATATAATAAATAAA
23345560 ACAAATAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
15 2 0.05
16 6 0.14
17 20 0.47
20 15 0.35
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (18 bp):
TAATATATAATAAATAAA
Found at i:23345544 original size:20 final size:20
Alignment explanation
Indices: 23345490--23345546 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
23345480 TTGTGAAAAG
*
23345490 TAATATATAATA-AATAACAA
1 TAATATATAATATAA-AATAA
23345510 TAATATAT-A-AT-AAATAA
1 TAATATATAATATAAAATAA
*
23345527 TTATATATAATATAAAATAA
1 TAATATATAATATAAAATAA
23345547 GATTAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
17 11 0.35
18 3 0.10
19 3 0.10
20 14 0.45
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
TAATATATAATATAAAATAA
Found at i:23348050 original size:410 final size:411
Alignment explanation
Indices: 23347174--23348063 Score: 1396
Period size: 411 Copynumber: 2.2 Consensus size: 411
23347164 ACCTGAGAGT
* * * * * * * *
23347174 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACTC-AGGAATGCCAAATCATCTTGGATC-C
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGG-ATGCCAAACCATCTTGGATCTT
* * *
23347237 ACTTCAGTATAAATATCTGAAGGTTAGATCTGCTATGTATCTGCCCTCCGTCGAATATGGAGATG
65 ACTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCCCTCCGTCGAATATGGAGATG
* * *
23347302 CCAGACTTCGATTTGTTCCTGACACTACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
130 CCAGACTTCGACTTGCTCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
* *
23347367 ACACGTGAAAACCAAATCAGCTATGTATTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCA
195 ACACGTGAAAACCAAATCAGCTATGTATTCGATTCGTTCCTTGTAAGCACAAGGATGCCAAACCA
* * * *
23347432 TCTTGGATCTGTTTCAATATAAACATTTGAAGGTGAGATTTGCTATGTATCTGCTCTCCGTTGAA
260 TCTTGGATCTGCTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAA
*
23347497 GTGGAGATGCCAGACTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTAC
325 GTGGAGATGCCAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTAC
23347562 TTCATCGTAAACACGTGAAAGC
390 TTCATCGTAAACACGTGAAAGC
* * *
23347584 CAAATCAGTTATGTCTTCGGTTCGTTCCTTATTAGCACAAGGATGCCAAACCATCTTGGATCTTA
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTA
* * *
23347649 CTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCC-CCTTTGAA-GTGGAGATG
66 CTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGC-CCTCCGTCGAATATGGAGATG
23347712 CCAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
130 CCAGACTTCGACTTGCTC-CTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
* *
23347777 AACACGTG-AAACCAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACC
194 AACACGTGAAAACCAAATCAGCTATGTATTCGATTCGTTCCTTGTAAGCACAAGGATGCCAAACC
*
23347841 ATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTG
259 ATCTTGGATC-TGCTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTG
*
23347906 AAGTGGAGATGCCAGACTTCGACTTGCTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTT
323 AAGTGGAGATGCCAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTT
*
23347971 GCTTCATCGTAAACACGTGAAA-C
388 ACTTCATCGTAAACACGTGAAAGC
* *
23347994 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCTAAACCATCTTGGATCTTG
1 CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTA
23348059 CTTCA
66 CTTCA
23348064 GCCCGATCTG
Statistics
Matches: 438, Mismatches: 37, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
410 200 0.46
411 236 0.54
412 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (411 bp):
CAAATCAGCTATGTCTTCGGTTCGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTTA
CTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCCCTCCGTCGAATATGGAGATGC
CAGACTTCGACTTGCTCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAA
CACGTGAAAACCAAATCAGCTATGTATTCGATTCGTTCCTTGTAAGCACAAGGATGCCAAACCAT
CTTGGATCTGCTTCAATATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAG
TGGAGATGCCAGACTTCGACTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTACT
TCATCGTAAACACGTGAAAGC
Done.